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[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 323 bits (829), Expect = 3e-87
Identities = 166/168 (98%), Positives = 167/168 (99%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL
Sbjct: 90 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 149
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE
Sbjct: 150 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 209
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVL-EPITVEEAIDALEAVGHSFYV 503
EQLQRQFAELNRIYPANVMRSKTVVL +PITVEEAIDALEAVGHSFYV
Sbjct: 210 EQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 257
[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 176 bits (446), Expect = 8e-43
Identities = 84/115 (73%), Positives = 101/115 (87%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKVAKA+ NF+HTLKEVDVTLSARGGDTGTHGKKEQKV+VTI+TLRNGVVRVED E+NL
Sbjct: 94 EEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNL 153
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ 347
YAAIDLVCDKIR+KL ++KEKAI++G WPG+AGPKE+V+ + +++TQ
Sbjct: 154 YAAIDLVCDKIRSKLTRVKEKAITKGKWPGKAGPKENVEGRRTSKSTSRCQVETQ 208
[3][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 105 bits (262), Expect = 2e-21
Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV +AV+ H ++EVDV LSARGG+ G G K + E+T+++ R+GV+R E+ +
Sbjct: 92 EDKVGRAVSKHCHLVREVDVRLSARGGELG-RGPKTSRCEITLFSKRHGVLRAEEDAEST 150
Query: 183 YAAIDLVCDKIRAKLQKIKEK--AISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
YA+IDL I+ KL+KIKEK + R G G E+ + +D L +
Sbjct: 151 YASIDLAAAIIKRKLRKIKEKETEVRRDGDGGAGGAWEE----------ELPLLDDDLVE 200
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+E AE + A V+R+K + P+TVEEA++ L+ VGH+FY
Sbjct: 201 ADELAAAVGAEDEQTVVAKVVRTKVFEMPPLTVEEALEQLDNVGHNFY 248
[4][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 101 bits (251), Expect = 3e-20
Identities = 63/166 (37%), Positives = 95/166 (57%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV K+V SH ++EVDV LS RGG+ G G + ++ EVT++T ++GVVR E+ +
Sbjct: 159 EEKVGKSVQKHSHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETV 217
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA IDLV I+ KL+KIKEK G + + V E + +++V+ T E
Sbjct: 218 YACIDLVSTIIQRKLRKIKEKDSDHGRHM-KGFNRLKVREPVIEPVVEDVEDSTDSSVGE 276
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E+ + + ++R+KT + P+TV EA++ LE V H FY
Sbjct: 277 EEEEDDLIK-------EIVRTKTFEMPPLTVAEAVEQLELVSHDFY 315
[5][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 100 bits (250), Expect = 4e-20
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K+VA SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +L
Sbjct: 95 EDKVGKSVAKHSHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESL 153
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF----QEYLKEVKMDTQL 350
Y++IDLV I+ KL+KIK+K G + D E +E L+EV+
Sbjct: 154 YSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAP 213
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E+ F E V+R+K + P+T+ EA++ LE V H FY
Sbjct: 214 VSVEDD---DFIE-------EVVRTKYFDMPPLTITEAVEQLENVDHDFY 253
[6][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 100 bits (248), Expect = 7e-20
Identities = 66/166 (39%), Positives = 97/166 (58%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV AV N S +KEVDV +S RGG+TG G++ Q+ EVT++T ++GVVR E+ ++
Sbjct: 108 EEKVGNAVHNQSALVKEVDVRMSVRGGETG-RGERLQRCEVTLFTKKHGVVRAEEEAESM 166
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+ID V D I KL+KIKEK G P + P+ + EV + ++ D +
Sbjct: 167 YASIDRVSDVISRKLRKIKEKDGGHGR-PAKYSPR-----------IGEV-LSNEVVDLD 213
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
L+R+ +L P V+R+K + P+ EA++ L VGH FY
Sbjct: 214 PILERKPDDL----PDEVVRTKYFEMRPMKPLEALEQLVNVGHDFY 255
[7][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 99.8 bits (247), Expect = 9e-20
Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ +
Sbjct: 108 EDKVGKAVQKHSHLVREVDVRLSVRGGEFGK-GPKIRRCEVTLFTKKHGVIRAEEDAETI 166
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
YA+IDLV I+ KL+KIKEK G R +E V E VK DT
Sbjct: 167 YASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAE--------PVKDDT--- 215
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+++ + + Y V+R+K + P+TV EAI+ L+ V H FY
Sbjct: 216 ---DEVDGVLGDEDEDYIDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFY 261
[8][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 99.4 bits (246), Expect = 1e-19
Identities = 62/166 (37%), Positives = 95/166 (57%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ KAV SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++
Sbjct: 105 EEKLGKAVQKHSHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDGESI 163
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +ID+V I+ KL+KIKEK RG + D E V+ D + +E
Sbjct: 164 YGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPEALL-----VQEDLETLSQE 218
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E+++ ++ + V+R K+ + P++V EAI+ LE V H FY
Sbjct: 219 EEVEDDKSD---GFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFY 261
[9][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 99.4 bits (246), Expect = 1e-19
Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 1/167 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV +AV+ H ++EVDV LSARGG+ G G K + E+T++T R+GV+R E+ +
Sbjct: 92 EDKVGRAVSKHCHLVREVDVRLSARGGELG-RGPKTSRCEITLFTKRHGVLRAEEDAEST 150
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV-DEEDFQEYLKEVKMDTQLFDK 359
YA+IDL ++ KL+KIKEK R G + V DE + L + D D
Sbjct: 151 YASIDLAAAIVKRKLRKIKEKETE----VRRGGDADGVWDEIPPADLLPPAEAD----DL 202
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E + AE A V+R+K + P+TVEEA++ LE V H FY
Sbjct: 203 EAAVG---AEDEETVLAKVVRTKVFEMPPLTVEEALEQLENVDHDFY 246
[10][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 98.6 bits (244), Expect = 2e-19
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = +3
Query: 3 EEKVAKAVANFS-HTLKEVDVTLSARGG-DTGTHGKKEQKVEVTIYTLRNGVVRVEDAEN 176
EEK+ KAVA+F H ++EVDV S+RGG D T G QK EVT+YT RNG++R E+ +
Sbjct: 100 EEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEAD 158
Query: 177 NLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
+LYA+ID V DK+ KL+K+KEK IS+ + PK D + + + + D
Sbjct: 159 DLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAPKAQTDAIVEEMQAADEALADESMD 218
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+E V+R K + TV EA + +E +GH+F+
Sbjct: 219 YDE----------------VVREKFHPVRKCTVYEAAEEMENLGHTFF 250
[11][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 97.4 bits (241), Expect = 5e-19
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK +AVA S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ +
Sbjct: 101 EEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAEST 159
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVKMD 341
YA+IDL I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 160 YASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEA 219
Query: 342 TQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
D++ L + V+R+K + P++VEEA++ L V H+FY
Sbjct: 220 VGAEDEDTVLTK------------VVRTKVFEMPPLSVEEAMEQLVNVDHNFY 260
[12][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 97.4 bits (241), Expect = 5e-19
Identities = 61/166 (36%), Positives = 95/166 (57%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ KAV SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++
Sbjct: 77 EEKLGKAVQKHSHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDAESI 135
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +ID+V I+ KL+KIKEK G + D E + V+ D + +E
Sbjct: 136 YGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRDPE-----VLLVQEDLETLPQE 190
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E+++ + + + V+R K+ + P++V EAI+ LE V H FY
Sbjct: 191 EEVEDD--DKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFY 234
[13][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 97.1 bits (240), Expect = 6e-19
Identities = 65/169 (38%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ +
Sbjct: 90 EDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAEST 149
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
Y +IDLV I+ KL+KIKEK G R +E V++ +E D L
Sbjct: 150 YGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPVEE-------DEILS 202
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+EE+ V+R+K + P+TV EAI+ LE V H FY
Sbjct: 203 PQEEEESID----------EVVRTKYFDMPPLTVAEAIEQLENVDHDFY 241
[14][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 97.1 bits (240), Expect = 6e-19
Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV AV ++ ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ +
Sbjct: 108 EEKVGIAVQKHANLVREVDVRLSIRGGEVGK-GPKIRRCEVTLFTKKHGVVRAEEEAETI 166
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ----- 347
YA+ID+V D IR KL+KIKEK G P + + E L V MD +
Sbjct: 167 YASIDIVSDIIRRKLRKIKEKD------GGHGRPSKMRKQPKLGELLSTVVMDVKETRDK 220
Query: 348 ----LFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
L D EE + +L+ V+R+K + P++ EEA++ L V H FY
Sbjct: 221 ELDDLADVEEMRYEKIDDLS----DEVVRTKYFEMPPMSPEEALEQLMNVDHDFY 271
[15][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 96.3 bits (238), Expect = 1e-18
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV AV N S +KEVDV +S RGG+TG GK Q+ EVT++T ++GVVR E+ ++
Sbjct: 30 EEKVGNAVHNQSALVKEVDVRMSVRGGETGRGGKL-QRCEVTLFTKKHGVVRAEEEAESM 88
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE--VKMDTQLFD 356
YA+ID V D I KL+KIKEK G P + E L + V +D L
Sbjct: 89 YASIDRVSDVISRKLRKIKEKD------GGHGRPTKSRHSPRIGEVLSDEVVDLDPILGR 142
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
K + L P ++R+K + P+ EA++ L VGH FY
Sbjct: 143 KPDDL-----------PDEIVRTKYFEMRPMKPLEALEQLVNVGHDFY 179
[16][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 95.9 bits (237), Expect = 1e-18
Identities = 64/166 (38%), Positives = 93/166 (56%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV KAV SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ L
Sbjct: 98 EEKVGKAVQKHSHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETL 156
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +ID+V I+ KL+KIKEK G + F LK +T L ++E
Sbjct: 157 YGSIDMVSSIIQRKLRKIKEKDSDHGR-----------HMKGFNR-LKVRDPETPLVEEE 204
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+ Q + + I ++R+K + P+TV EA++ LE V H F+
Sbjct: 205 ADVVPQKEDGDLI--NEIVRTKYFDMPPLTVPEAVEQLENVDHDFF 248
[17][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 95.9 bits (237), Expect = 1e-18
Identities = 64/166 (38%), Positives = 93/166 (56%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEKV KAV SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ L
Sbjct: 30 EEKVGKAVQKHSHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETL 88
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +ID+V I+ KL+KIKEK G + F LK +T L ++E
Sbjct: 89 YGSIDMVSSIIQRKLRKIKEKDSDHGR-----------HMKGFNR-LKVRDPETPLVEEE 136
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+ Q + + I ++R+K + P+TV EA++ LE V H F+
Sbjct: 137 ADVVPQKEDGDLI--NEIVRTKYFDMPPLTVPEAVEQLENVDHDFF 180
[18][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 95.5 bits (236), Expect = 2e-18
Identities = 64/166 (38%), Positives = 93/166 (56%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++EVDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +
Sbjct: 106 EDKVGKAVQKHSHLVREVDVRLSVRGGELGK-GPRIRRCEVTLFTNRHGVVRAEEDAETI 164
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV I+ KL+KIKEK G + + +E + +V D +
Sbjct: 165 YASIDLVSSIIQRKLRKIKEKESDHGR------HMKGFNRLKVREPVPQVVEG----DAD 214
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E Q++ + V+R+K + P+TV EAI+ LE V H FY
Sbjct: 215 EVSQQEVEDSIE----EVVRTKFFDMPPLTVSEAIEQLENVDHDFY 256
[19][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 94.7 bits (234), Expect = 3e-18
Identities = 60/166 (36%), Positives = 92/166 (55%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +
Sbjct: 30 EDKVGKAVQKSSHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETI 88
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
+A+IDLV I+ KL+KIK+K G + + +E + +V ++ +
Sbjct: 89 HASIDLVSSIIQRKLRKIKDKESDHGR------HMKGFNRLKVREPMHQVVVEDDADEVS 142
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+Q + E V+R+K + P+TV EAI+ LE V H FY
Sbjct: 143 QQEDEDYIE-------EVVRTKYFDMPPLTVSEAIEQLEHVHHDFY 181
[20][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 94.7 bits (234), Expect = 3e-18
Identities = 60/166 (36%), Positives = 92/166 (55%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +
Sbjct: 105 EDKVGKAVQKSSHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETI 163
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
+A+IDLV I+ KL+KIK+K G + + +E + +V ++ +
Sbjct: 164 HASIDLVSSIIQRKLRKIKDKESDHGR------HMKGFNRLKVREPMHQVVVEDDADEVS 217
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+Q + E V+R+K + P+TV EAI+ LE V H FY
Sbjct: 218 QQEDEDYIE-------EVVRTKYFDMPPLTVSEAIEQLEHVHHDFY 256
[21][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 91.3 bits (225), Expect = 3e-17
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 7/173 (4%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK +AVA S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ +
Sbjct: 101 EEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAEST 159
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVKMD 341
YA+IDL I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 160 YASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEA 219
Query: 342 TQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
D++ L R V+R+K + P++ EEA++ L H+F+
Sbjct: 220 VGAEDEDTVLTR------------VVRTKVFEMPPLSGEEAMEQLGNGDHTFH 260
[22][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 86.7 bits (213), Expect = 8e-16
Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = +3
Query: 3 EEKVAKAVANFS-HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENN 179
E+K+ KAV++F H ++EVDVT SAR G Q +VT+YT RNGVVR E+ +N
Sbjct: 66 EQKINKAVSHFDMHDVREVDVTCSARSEKQ--QGGDLQMTQVTVYT-RNGVVRSEEEADN 122
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK-EDVDEEDFQEYLKEVKMDTQLFD 356
LYA+ID V DKI KL+KIKEK S+ A +A PK + D E + D F+
Sbjct: 123 LYASIDAVSDKIERKLRKIKEKKNSKKAGKTKANPKAQTADIVAAAAEADEARADEIEFE 182
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
+ + K + ++ T EA + +E++GH FY
Sbjct: 183 E------------------TVGVKYMAVKTSTAMEAAEEMESLGHVFY 212
[23][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 82.8 bits (203), Expect = 1e-14
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ +A ++F + + EVDV LS AR T +Q EVT++ + V+R E++ NL
Sbjct: 22 QKIERATSHFQNVINEVDVHLSVARNRSTAP----KQTAEVTVF-VNGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF-DK 359
YA+IDLV DKI KL+K+KEK ++D + E ++ T L D+
Sbjct: 77 YASIDLVADKIARKLRKLKEK-------------RQDKSRAKDTNSVVEPEVVTDLVGDR 123
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
QL P V+R K + P+T++EA++ LE V H FYV
Sbjct: 124 TPQL-----------PEQVVRMKYFAMPPMTIQEALEHLEMVDHDFYV 160
[24][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TFU4_SOYBN
Length = 208
Score = 81.3 bits (199), Expect = 3e-14
Identities = 42/86 (48%), Positives = 56/86 (65%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ +
Sbjct: 90 EDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAEST 149
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRG 260
Y +IDLV I+ KL+KIKEK G
Sbjct: 150 YGSIDLVSSIIQRKLRKIKEKVSDHG 175
[25][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/168 (37%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+EK+ +AV++F+ EVDV LS Q EVT+Y NG V+R E++ N
Sbjct: 22 QEKIERAVSHFAQITSEVDVNLSVA---RNPRISASQSAEVTVYA--NGTVIRAEESSEN 76
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+ID V DK+ KL+K KE+ G R PK V + T +
Sbjct: 77 LYASIDRVADKLARKLRKYKER---NGIHRVRHTPKTSVAVAQ--------QPVTDPLNT 125
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E Q AEL PA V+R+K + P+TV+EA+ LE V H FYV
Sbjct: 126 ERQ-----AEL----PAEVVRTKYFAMPPMTVQEALHQLELVDHDFYV 164
[26][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10AC8_ORYSJ
Length = 241
Score = 79.7 bits (195), Expect = 1e-13
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK +AVA S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ +
Sbjct: 101 EEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAEST 159
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVKMD 341
YA+IDL I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 160 YASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEA 219
Query: 342 TQLFDKEEQLQR 377
D++ L +
Sbjct: 220 VGAEDEDTVLTK 231
[27][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 79.3 bits (194), Expect = 1e-13
Identities = 64/168 (38%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+EK+ +AV +F+ EVDV LS Q EVT+Y NG V+R E++ N
Sbjct: 22 QEKIERAVKHFAQITSEVDVNLSVA---RNPRISANQSAEVTVYA--NGTVIRAEESSEN 76
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+ID V DK+ KL+K KE+ G R PK V Q+ L T +
Sbjct: 77 LYASIDRVADKLARKLRKYKER---NGVHRIRHSPKTSVAVA--QQPL------TDPLNT 125
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E Q AEL P V+R+K + P+TV+EA+ LE V H FYV
Sbjct: 126 ERQ-----AEL----PPEVVRTKYFAMPPMTVQEALHQLELVDHDFYV 164
[28][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 78.6 bits (192), Expect = 2e-13
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ KAV +F + EVDV LS AR T Q EVTIY V+R E++ NL
Sbjct: 22 QKIEKAVNHFQNITNEVDVHLSVARNPRINTR----QAAEVTIYA-NGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KE+ Q+ + + T+ E
Sbjct: 77 YASIDLVADKISRQLRKYKERK---------------------QDQKTQAQPTTETIVPE 115
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + P V+R+K + P+TV EA++ L+ VGH FY+
Sbjct: 116 TVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYM 162
[29][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 78.6 bits (192), Expect = 2e-13
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
++K+ KA +F + E+DV LS +Q EVTIYT V+R E++ NL
Sbjct: 21 QQKIEKAANHFQNLTTEIDVHLSVA---RNPRINPKQTAEVTIYT-NGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF-DK 359
YA+IDLV DKI +L+K KE+ ++D +E + V + T L D+
Sbjct: 77 YASIDLVSDKIARQLRKFKER-------------RQDKHSRSKEEPVVSVPLVTDLTGDR 123
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R+K + P+T+ EA++ LE V H FY+
Sbjct: 124 TPEL-----------PEEVVRTKYFAMPPMTLREALEQLELVDHDFYM 160
[30][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJW3_9ROSI
Length = 268
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +
Sbjct: 105 EDKVGKAVQKSSHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETI 163
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE---EDFQEY 320
YA+IDL I+ KL+KIK+K G P ++D DE ++ ++Y
Sbjct: 164 YASIDLASSIIQRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVEDDADEVSQQEDEDY 223
Query: 321 LKEV 332
++EV
Sbjct: 224 IEEV 227
[31][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 78.2 bits (191), Expect = 3e-13
Identities = 56/166 (33%), Positives = 83/166 (50%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
+K+ KA A+F + +VDV LS + +Q EVT++ L N VVR E++ +LY
Sbjct: 22 QKIEKATAHFQTLINKVDVCLSVQNNPRIA---PKQTAEVTVF-LNNVVVRAEESSESLY 77
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+ID+V DK+ +L+K KEK R V D + + + D E
Sbjct: 78 ASIDMVTDKLTRQLRKYKEKR--------RDQDHATVRPTDVDATINAPDITSHNADISE 129
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L Q P V+RSK + P+TV+ A++ LE VGH FY+
Sbjct: 130 VLNHQ-----PKLPDTVVRSKYFAMPPMTVQTALENLELVGHDFYM 170
[32][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 78.2 bits (191), Expect = 3e-13
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
EEKV +AV +F + +VDV LS T+ + K EVT+Y NG V+R ++ N
Sbjct: 21 EEKVERAVKHFQNLTTKVDVHLSVARNARITN---KHKAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV DKI +L+K KE+ + G E V+++ +E L + D+
Sbjct: 76 LYASIDLVADKIARQLRKYKERI--QDKQHGNVKTSEIVEDKPVEENL--------IGDR 125
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P+ V+R K + P+ +E+A++ L+ V H FY+
Sbjct: 126 APEL-----------PSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYM 162
[33][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 78.2 bits (191), Expect = 3e-13
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA +F +VDV LS T + K EVT+Y NG V+R ++ N
Sbjct: 21 ESKLEKATKHFQTFATKVDVHLSVANNARITD---KHKAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV DKI +L+K KEK G K V E+ + ++ D + D+
Sbjct: 76 LYASIDLVSDKIARQLRKYKEK---------NFGKKTHVQEKTSEVLPEDPVPDNLIGDR 126
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P+ V+R K + P+T++EA++ L+ V H FY+
Sbjct: 127 APEL-----------PSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYM 163
[34][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 77.4 bits (189), Expect = 5e-13
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ KAV +F + EVDV LS AR T Q EVTIY V+R E++ NL
Sbjct: 22 QKIEKAVNHFQNITNEVDVHLSVARNPRINTR----QAAEVTIYA-NGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KE+ Q+ + T+ E
Sbjct: 77 YASIDLVADKISRQLRKYKERK---------------------QDQKTQALPTTETIVPE 115
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + P V+R+K + P+TV EA++ L+ VGH FY+
Sbjct: 116 TVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYM 162
[35][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 77.4 bits (189), Expect = 5e-13
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
++K+AKAV++F EVDV LS Q EVTIY NG V+R +++ N
Sbjct: 21 QQKIAKAVSHFQQLTNEVDVHLSVA---RNPRINPRQTAEVTIYA--NGTVIRAQESSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV DKI +L+K KEK +++ + G + ++ +D + D+
Sbjct: 76 LYASIDLVADKIARQLRKYKEKRMAKQYQLPKTG----------EVVAQKPIVDDLIGDR 125
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R+K + P++++EA++ L+ + H FY+
Sbjct: 126 TVKL-----------PEEVVRTKYFAMPPMSIQEALEQLQLIDHDFYM 162
[36][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 77.0 bits (188), Expect = 6e-13
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
++K+ KAV +F +VDV LS + + K EVT+Y NG V+R ++ N
Sbjct: 21 QQKLEKAVKHFQTLTTKVDVHLSVA---KNARIQNKHKAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
LYA+IDLV DKI +L+K KE+ + + A P +AG E V +E +E L + D
Sbjct: 76 LYASIDLVSDKIARQLRKYKERKLEQNAHSPVKAG--EVVQQETIEENL--------IGD 125
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++ +L P V+R K + P++++EA++ L+ V H F++
Sbjct: 126 RQPEL-----------PPEVVRMKYFGMPPMSIDEALEQLQLVDHDFFM 163
[37][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 76.3 bits (186), Expect = 1e-12
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAE 173
++K+ KAV+++ L E+DV LS H K Q EVTIY NG V+R E+
Sbjct: 21 QQKLDKAVSHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECN 73
Query: 174 NNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
NLYA+IDLV DKI +L+K KEK R G+ E D+ L + + T L
Sbjct: 74 ENLYASIDLVSDKITRQLKKYKEKLRDR---KGQLSTAETADQ------LSDGALVTDLL 124
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + EL P +++R+K + +TVE+A+ L+ V H FY+
Sbjct: 125 NGRQ------PEL----PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164
[38][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 76.3 bits (186), Expect = 1e-12
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNL 182
+K+ KAV +F EVDV LS +Q EVTIY NG V+R +++ NL
Sbjct: 22 QKIEKAVNHFQQLTTEVDVHLSVA---RNPRINPKQTAEVTIYA--NGTVIRAQESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KEK S + + VD + Q ++ + D Q
Sbjct: 77 YASIDLVADKIARQLRKYKEKRQS------KVNKTKTVDLIESQPVVENLIGDRQ----- 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
AEL P+ V+R+K + +TVEEA++ L+ + H FY+
Sbjct: 126 -------AEL----PSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYM 161
[39][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 75.1 bits (183), Expect = 2e-12
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ KA ++F EVDV LS AR T Q EVTIY V+R E++ NL
Sbjct: 22 QKIEKAASHFQSITNEVDVHLSVARNPRINTR----QAAEVTIYA-NGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KE+ ++ K T++ E
Sbjct: 77 YASIDLVADKIARQLRKYKER----------------------RQDQKTQSQPTEVVVAE 114
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + P V+R+K + P+T+ EA++ L+ VGH FY+
Sbjct: 115 SVVPDLIGDRTPELPNEVVRTKYFSMPPMTLAEALEQLQLVGHDFYM 161
[40][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 75.1 bits (183), Expect = 2e-12
Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E+K+ KAV +F+ +VDV LS + + EVT+Y NG V+R ++ N
Sbjct: 21 EQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHRAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAIS-RGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF- 353
LYA+IDLV DKI +L+K KE+ + R P + E ++E +D L
Sbjct: 76 LYASIDLVSDKIARQLRKYKERLVDHRTNAPVKT-----------SEVVQEKPLDGSLIG 124
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
D+ +L PA V+R K + P+T+EEA+ L+ V H FY+
Sbjct: 125 DRTPEL-----------PAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
[41][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 74.7 bits (182), Expect = 3e-12
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAE 173
++K+ KAV+++ L E+DV LS H K Q EVTIY NG V+R E+
Sbjct: 21 QQKLDKAVSHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECN 73
Query: 174 NNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
NLYA+IDLV DKI +L+K KE+ R G+ E D+ L + + T L
Sbjct: 74 ENLYASIDLVSDKITRQLKKYKEELRDR---KGQLSTAETADQ------LSDGALVTDLL 124
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + EL P +++R+K + +TVE+A+ L+ V H FY+
Sbjct: 125 NGRQ------PEL----PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164
[42][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 74.7 bits (182), Expect = 3e-12
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E+K+ KAV +F+ +VDV LS + K EVT+Y NG V+R ++ N
Sbjct: 21 EQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHKAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF-D 356
LYA+IDLV DKI +L+K KE+ + E ++E +D L D
Sbjct: 76 LYASIDLVSDKIARQLRKYKERLVDH----------RTHSTVKTSEVVQEKPLDDNLIGD 125
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ +L PA V+R K + P+T+EEA+ L+ V H F++
Sbjct: 126 RTPEL-----------PAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
[43][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 74.7 bits (182), Expect = 3e-12
Identities = 53/166 (31%), Positives = 77/166 (46%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
+K+ KAV++F + EVDV LS T +Q EVTI+ V+R E++ NLY
Sbjct: 22 QKIEKAVSHFQNITNEVDVHLSVARNPRIT---TKQAAEVTIFA-NGSVIRAEESSENLY 77
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+IDLV DKI +L+K KE+ Q+ Q+ E
Sbjct: 78 ASIDLVADKIARQLRKYKER---------------------LQDQKTNAPPTNQVLVPEP 116
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ P V+R+K + P+TV EA + L+ VGH FY+
Sbjct: 117 VAADLIGDRTPELPNEVVRTKYFSMPPMTVAEATEQLQLVGHDFYM 162
[44][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 74.3 bits (181), Expect = 4e-12
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNL 182
+K+ KAV+++ EVDV LS +Q EVTIY NG V+R +++ NL
Sbjct: 22 QKITKAVSHYQQLTNEVDVHLSIA---RNPRINPKQTAEVTIYA--NGTVIRAQESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K K+K + P + E V+ + E L + D++
Sbjct: 77 YASIDLVADKIARQLRKFKDKRQGKHLHPPKLA--EVVENQPVIEDL--------IGDRQ 126
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R+K + P+ +++A++ L+ V H FYV
Sbjct: 127 PEL-----------PPEVVRTKYFAMPPMNLQDALEQLQLVDHDFYV 162
[45][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 73.9 bits (180), Expect = 5e-12
Identities = 51/167 (30%), Positives = 85/167 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K + N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NL
Sbjct: 21 ESKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENL 71
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y AID+V DK+ +L+K K++ D+ + ++ + L D++
Sbjct: 72 YTAIDVVYDKLSKQLKKYKKRL---------------QDKHKDNKSIRFQDAEINLADEQ 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + EL + R K ++P++ EEA+ +E +GH FY+
Sbjct: 117 EDYGDENQEL------VIQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[46][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 73.9 bits (180), Expect = 5e-12
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ KAV +F + EVDV LS AR T +Q EVTIY + V+R +++ +L
Sbjct: 22 QKIEKAVNHFQNMTTEVDVHLSVARNPRINT----KQTAEVTIYANKT-VIRAQESSEDL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI+ +L+K KEK + + G + E E L + D+
Sbjct: 77 YASIDLVADKIQRQLRKYKEKQQKKTQTQPKTGAV--IHEAPVVEDL--------IGDRT 126
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R K + P+T+EEA + L+ V H FY+
Sbjct: 127 PEL-----------PTEVVRMKYFAMPPMTIEEATEQLQLVDHDFYM 162
[47][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 73.9 bits (180), Expect = 5e-12
Identities = 52/167 (31%), Positives = 89/167 (53%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K++K + + H EV VT+SAR K +QK+EVTI + ++R ED+E NL
Sbjct: 27 EDKLSK-LDRYLHEDTEVKVTVSAR--------KAKQKIEVTIIPINGPIIRAEDSEENL 77
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAID+V DK+ +L++ K K +G + + +E + ++ ++ E DK+
Sbjct: 78 YAAIDVVYDKLNKQLRRYKNKL--KGKYQSKG--QESIRFQNIEDNAAE--------DKD 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + + R K ++P++ EEA+ +E VGH FY+
Sbjct: 126 GE-----------FDIVIERHKKFDMKPMSPEEAVLQMELVGHDFYM 161
[48][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 73.6 bits (179), Expect = 7e-12
Identities = 51/167 (30%), Positives = 85/167 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K + N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NL
Sbjct: 21 ETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENL 71
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y AID+V DK+ +L+K K++ D+ + ++ + L D++
Sbjct: 72 YTAIDVVYDKLSKQLKKYKKRL---------------QDKHKDNKSIRFQDSEINLADEQ 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + EL + R K ++P++ EEA+ +E +GH FY+
Sbjct: 117 EDYGDENQEL------VIQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[49][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 73.6 bits (179), Expect = 7e-12
Identities = 51/167 (30%), Positives = 85/167 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K + N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NL
Sbjct: 21 ETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENL 71
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y AID+V DK+ +L+K K++ D+ + ++ + L D++
Sbjct: 72 YTAIDVVYDKLSKQLKKYKKRL---------------QDKHKDNKSIRFQDAEINLADEQ 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + EL + R K ++P++ EEA+ +E +GH FY+
Sbjct: 117 EDYGDENQEL------VIQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[50][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 73.6 bits (179), Expect = 7e-12
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENN 179
+EK+ KAV +F +VDV LS A+ G + + K EVT+Y V+R ++ N
Sbjct: 21 QEKLEKAVKHFQAITTKVDVHLSVAKNGRV----QNKHKAEVTVYA-NGAVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
LYA+IDLV DKI +L+K KE+ + + A+ P + G DV ++ E + D
Sbjct: 76 LYASIDLVSDKIARQLRKYKERRLEQKAYSPVKTG---DVVQDQPVE-------GNLIGD 125
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++ +L P V+R K + +++EEA++ L+ V H FY+
Sbjct: 126 RQPEL-----------PPEVVRMKYFAMPLMSIEEALEQLQLVDHDFYM 163
[51][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 73.2 bits (178), Expect = 9e-12
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+K+ +AV +F EV+V LS AR T +Q EVTIY V+R E++ NL
Sbjct: 22 QKIERAVNHFQSITNEVNVHLSVARNPRIST----KQAAEVTIYA-NGSVIRAEESSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KE+ P + + E D+ + D+
Sbjct: 77 YASIDLVADKIARQLRKYKERRQDHKTQPIPTN----------EAVVAEPVADSLIGDRT 126
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R+K + P+T+ EA + L+ VGH FY+
Sbjct: 127 PEL-----------PGEVVRTKYFPMPPMTLAEAQEQLQLVGHDFYM 162
[52][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 72.8 bits (177), Expect = 1e-11
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+EK+ KAV +F +VDV LS T+ + K EVT+Y NG V+R ++ +
Sbjct: 28 QEKLEKAVKHFQSITTKVDVHLSVARNARITN---KHKAEVTVYA--NGTVIRAQEGSES 82
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV DKI +L+K KEK ++ A +K ++ T +
Sbjct: 83 LYASIDLVSDKIARQLRKYKEKLNNKKA----------------PNPVKVGEVTTATAIE 126
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + + EL PA V+R K + P+T++EA+ LE V H FY+
Sbjct: 127 GDLIGDRTPEL----PAEVIRMKYFAMPPMTIDEALHQLELVDHDFYM 170
[53][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 72.0 bits (175), Expect = 2e-11
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 4/170 (2%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
+K+ KA ++ + E+DV LS T +Q EVT++ + V+R E++ NLY
Sbjct: 22 QKIEKAANHYQNLTTEIDVHLSVARNPRIT---TKQTAEVTLF-VNGSVIRAEESSENLY 77
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+IDLV DKI +L+K KEK ++G P + + K V + T
Sbjct: 78 ASIDLVADKIARQLRKYKEKRQTKG--PNKGSNRS-----------KAVALQT------P 118
Query: 366 QLQRQFAELNR----IYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ Q +L R P V+R K + P++V +A++ L+ V H FYV
Sbjct: 119 EEQPLIGDLTRDRAPELPEEVVRCKYFAISPMSVHDALEQLDLVDHDFYV 168
[54][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 71.2 bits (173), Expect = 3e-11
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNL 182
+K+ KAV ++ +VDV LS T+ + K EVT+Y NG V+R ++ NL
Sbjct: 24 QKLEKAVKHYQTLTTKVDVHLSVAKNARITN---KHKAEVTVYA--NGTVIRAQEGSENL 78
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF-DK 359
YA+IDLV DKI +L+K KEK P+ V E L E +++ L D+
Sbjct: 79 YASIDLVSDKIARQLRKYKEKI-------NNHKPQSSVKN---PEVLPEREIEKDLIGDR 128
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E L P V+R K + P+++EEA LE V H FY+
Sbjct: 129 EAAL-----------PPEVIRMKYFAMPPMSIEEAKHQLELVDHDFYM 165
[55][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 71.2 bits (173), Expect = 3e-11
Identities = 53/167 (31%), Positives = 84/167 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+++AV++F+ ++E DV LS +Q EVT++ V+R ++ NL
Sbjct: 21 ETKLSRAVSHFNGMVQEADVHLSVARNPR----VPQQTAEVTLFA-SGTVIRAQERSQNL 75
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV K+ +LQ+ K++ G D Q + + + +
Sbjct: 76 YASIDLVAGKLARQLQRHKDRRQGHG------------HHSDLQAEPEVMPL------QG 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ LQ + AEL PA V+R K + P++VEEAI LE + H FYV
Sbjct: 118 DMLQGRHAEL----PAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV 160
[56][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 71.2 bits (173), Expect = 3e-11
Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNL 182
+K+ KAV ++ +VDV LS T + K EVT+Y NG V+R ++ NL
Sbjct: 22 QKLEKAVKHYQTFTTKVDVHLSVAKNARITD---KHKAEVTVYA--NGTVIRAQEGSENL 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DKI +L+K KEK + P + DV E EVK D + D+E
Sbjct: 77 YASIDLVSDKIARQLRKYKEKINNHK--PQSSVKSPDVLPE------TEVKEDL-IGDRE 127
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L P V+R K + P+++EEA LE V H FY+
Sbjct: 128 VEL-----------PPEVIRMKYFAMPPMSIEEAKHQLELVDHDFYM 163
[57][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 70.5 bits (171), Expect = 6e-11
Identities = 50/151 (33%), Positives = 77/151 (50%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
K K K + + + E+ + D +D EE + N +
Sbjct: 88 KYKTKV------KDKVQNNKSIRFENLDFIDNSSEFDDYDYDDEE-------DENIV--- 131
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ R K ++P++ EEAI +E VGH+FY+
Sbjct: 132 -IERRKKFNVKPMSSEEAILQMELVGHNFYM 161
[58][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 68.2 bits (165), Expect = 3e-10
Identities = 51/151 (33%), Positives = 76/151 (50%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
K K K + ++ E+VD D + +D EE
Sbjct: 88 KYKTK-VKDKVQNNKSIRFENVDFIDNSSEFDD-------YDDEEYEN-----------I 128
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ R K ++P++ EEAI +E VGH+FY+
Sbjct: 129 VIERRKKFNVKPMSSEEAILQMELVGHNFYM 159
[59][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 68.2 bits (165), Expect = 3e-10
Identities = 48/151 (31%), Positives = 75/151 (49%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
K K K K ++ E L + ++ D +++
Sbjct: 88 KYKTK----------VKDKVQNNKSIRFENLDFIDNSSEFDDYDDEEDENIV-------- 129
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ R K ++P++ EEAI +E VGH+FY+
Sbjct: 130 -IERRKKFNVKPMSSEEAILQMELVGHNFYM 159
[60][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 68.2 bits (165), Expect = 3e-10
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
++K+ KAV ++ +VDV LS T + K EVT+Y NG V+R ++ N
Sbjct: 21 KQKLEKAVKHYQTFTTKVDVHLSVAKNARITD---KHKAEVTVYA--NGTVIRAQEGSEN 75
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV DKI +L+K KEK +S A E + E++ E L + D+
Sbjct: 76 LYASIDLVSDKISRQLRKYKEK-VSNHKPQSSAKLPEVLPEKEVSEDL--------IGDR 126
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ +L P V+R K + +++EEA LE V H FY+
Sbjct: 127 QAEL-----------PPEVIRMKYFAMPSMSIEEAKHQLELVDHDFYM 163
[61][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 68.2 bits (165), Expect = 3e-10
Identities = 51/151 (33%), Positives = 77/151 (50%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
EV VT+SA GK QKVEV I + +RVE+ ++NLY AIDLVCDK+ ++
Sbjct: 44 EVKVTVSA--------GKNRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQII 95
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
K K+K +R PG + + EE QE +D ++ + E ++R+
Sbjct: 96 KYKDKFKTR--VPGNFSIRYEGIEELAQE------LDYEVEEPEVVIERR---------- 137
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
K L+P+++EEAI + H FY+
Sbjct: 138 -----KKFNLKPMSIEEAILQMNLTDHDFYM 163
[62][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
Length = 127
Score = 67.4 bits (163), Expect = 5e-10
Identities = 37/82 (45%), Positives = 51/82 (62%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV KAV FSH ++EVD LS RGG+ G + I R+GVVR E+ +
Sbjct: 12 EDKVGKAVQKFSHLVREVDARLSVRGGELGKGPR--------IRKCRHGVVRAEEDSETI 63
Query: 183 YAAIDLVCDKIRAKLQKIKEKA 248
YA IDLV I++KL+K+KE++
Sbjct: 64 YATIDLVLSIIQSKLRKMKEES 85
[63][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 66.6 bits (161), Expect = 9e-10
Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV-EVTIYTLRNGVVRVEDAENN 179
+ KV A+ F T DV L H ++K EVT+Y +RN VVRVE + +
Sbjct: 22 QHKVGDALKVFDITPMSCDVVLRV----DKNHSNPDRKTCEVTVY-VRNNVVRVEASSED 76
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
+YAAID DK+ +L+K K + I R R+ +D + + EV D L
Sbjct: 77 MYAAIDAASDKVTRQLRKYKTRIIDR---KQRSQAPAPAPSKDLSDLIDEVADDDML--- 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+R K + L P+T EEA+ + +GH FYV
Sbjct: 131 -------------------VREKYIDLHPMTEEEALVQTDLIGHDFYV 159
[64][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 66.2 bits (160), Expect = 1e-09
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ +A+ +F +KE DV LS + +Q EVT++ NG V+R ++ N
Sbjct: 21 QSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L++ KE+ PG E + E +D L D
Sbjct: 75 LYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTE----AVIDEAPIDGSLLDG 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E A L P+ +R K + P++VE+A L+ + H FY+
Sbjct: 131 KE------AHL----PSPGVRRKYFAMPPMSVEQARHQLDLIDHDFYL 168
[65][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 66.2 bits (160), Expect = 1e-09
Identities = 46/151 (30%), Positives = 76/151 (50%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
+V VT+SA+ G K+EVTI V+R E+++ NLY AIDLV DK++ +L+
Sbjct: 44 DVKVTVSAKKG--------RHKIEVTIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLK 95
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
K K+K R +E+ + + ++ L D E++L
Sbjct: 96 KYKDKMQKR--------HQENKSIRFDSPEINDSILEEDLEDFEDEL------------F 135
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ R K + ++P++ EEA+ +E VGH FY+
Sbjct: 136 IIKRRKRINIKPMSEEEAVLQMELVGHDFYI 166
[66][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 65.5 bits (158), Expect = 2e-09
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ +A+ +F +KE DV LS + +Q EVT++ NG V+R ++ N
Sbjct: 21 QSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L++ KE+ PG E + E +D L D
Sbjct: 75 LYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTE----AVIDEAPIDGSLLDG 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E A L P+ +R K + P++VE+A L+ + H FY+
Sbjct: 131 KE------AHL----PSPGVRRKYFAMPPMSVEQARYQLDLIDHDFYL 168
[67][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 65.5 bits (158), Expect = 2e-09
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ +A+ NF +KE DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 ETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L++ K++ G + E E +++ L K
Sbjct: 75 LYASIDLVASKLARQLRRYKDRHSDHHHSHGHKASETPTTEAVLD---NEAVVESLLDGK 131
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E QL P+ +R K + P+T+E+A L+ + H FYV
Sbjct: 132 EVQL-----------PSPGVRRKYFAMPPMTLEQARQQLDLIDHDFYV 168
[68][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 64.7 bits (156), Expect = 3e-09
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ +A+ NF +KE DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 ETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L++ K++ G + E + E +++ L K
Sbjct: 75 LYASIDLVASKLARQLRRFKDRHSDHHHSHGHRASETPTTESVLDD---EAIVESLLDGK 131
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E QL P+ +R K + P+T+E+A L+ + H FY+
Sbjct: 132 EVQL-----------PSPGVRRKYFSMPPMTLEQARQQLDLIDHDFYL 168
[69][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = +3
Query: 105 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 284
++QKVEVTI + N ++R ED ++YAAIDLV DK+ +++K K K R G
Sbjct: 49 EKQKVEVTI-PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKI-------NRRGR 100
Query: 285 KEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEA 464
+D ++ + L+ + + +++++E AEL ++R+K L+P+ EEA
Sbjct: 101 AKDGGIGEYFKTLEGPEAEAPVYEEDE------AEL------ELVRTKRFTLKPMDTEEA 148
Query: 465 IDALEAVGHSFYV 503
I ++ +GH+F+V
Sbjct: 149 ILQMDMLGHTFFV 161
[70][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 63.5 bits (153), Expect = 7e-09
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ +A+ +F +KE DV LS +Q EVT++ NG V+R ++ +N
Sbjct: 21 ETKLTRAITHFEGMVKEADVHLSVARNPR----VPQQIAEVTMFA--NGTVIRAQEHSDN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD- 356
LYA+IDLV K+ +L + KE+ R P + DEE L + L D
Sbjct: 75 LYASIDLVASKLTRQLNRYKERVHERHQGPVHRSAR---DEEAGAASLP--PPGSSLTDG 129
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
KE +L P+ +R K + P++++EA+ LE + H FYV
Sbjct: 130 KEPEL-----------PSRGVRRKYFAMPPMSLDEALHQLELIDHDFYV 167
[71][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 63.2 bits (152), Expect = 9e-09
Identities = 52/167 (31%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
++K+ A+ F T DV L D + EVT++ +RN VVRV + +++
Sbjct: 22 DQKIGDALKVFDITPMSCDVVLRV---DKNPSNPDRKTTEVTVF-VRNNVVRVTASSDDM 77
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAID DK+ +L+K K K + R R K + QE L + ++ D +
Sbjct: 78 YAAIDEAADKVSRQLRKYKTKVVER-----RHHMKSERGIALTQEDLANL-IEIPAEDLD 131
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+QL +R K V LEP+T EEA+ + +GH FYV
Sbjct: 132 DQL---------------VREKYVDLEPMTEEEALVQTDLLGHDFYV 163
[72][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 63.2 bits (152), Expect = 9e-09
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVV-RVEDAENN 179
E K+ +A+ ++ +KE DV LS +Q EVT++ NGVV R ++ N
Sbjct: 21 EAKLGRAINHYEGLVKEADVHLSVARNPRVA----QQTAEVTVFA--NGVVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+ID+V K+ +L++ K++ + AG +V ++ Q L+ V + + D+
Sbjct: 75 LYASIDMVAGKLSRQLRRYKDRLSNHHG----AGSPANVGDDTEQPSLEGVLPNDLIGDR 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E L P +R K + +++++A+ LE + H FYV
Sbjct: 131 EPAL-----------PVPAVRRKYFSMPAMSLDQALHQLELIDHDFYV 167
[73][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 62.8 bits (151), Expect = 1e-08
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG ++R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTIIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 350
LY++IDLV +K+ KL+K KE K + + ++E D +D +
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKERHNKKLHNNLVKNKNSYSNAIEESD--------SIDKDI 126
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
F++E +++ P ++ K + PI++EEA L+ + H FY+
Sbjct: 127 FNEEREVR---------LPEPSIKKKYFEMIPISLEEARKQLDFIDHDFYL 168
[74][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 62.8 bits (151), Expect = 1e-08
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +3
Query: 9 KVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLY 185
K+ KA NF ++E DV LS +Q EVT++ NG V+R ++ NLY
Sbjct: 23 KIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSENLY 76
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+IDLV +K+ +L+K KE+ S ++ + V ED Q + T+ KE
Sbjct: 77 ASIDLVANKLARQLRKYKERHNSHNVHHNQS--TKSVQNEDTQNFSSSDHSLTE--GKEP 132
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L P+ +R K + P+ +E+A L+ + H FY+
Sbjct: 133 HL-----------PSPGVRRKYFEMTPMNIEQARVQLDLIDHDFYL 167
[75][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 62.4 bits (150), Expect = 2e-08
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+++AK ++ F H V V LS K +VEVT+ + ++R E+ ++
Sbjct: 21 EKRLAK-LSKFEHHFGSVQVALSVE--------KDSHRVEVTV-PIDGMILRGEEVTGDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-PKEDVDEEDFQEYLKEVKMDTQLFDK 359
YA+IDLV +K+ +L++ K K ++R PG G +E +ED +EY
Sbjct: 71 YASIDLVVEKLEKQLERYKGKLLNRR--PGAGGVTREQETQEDEEEY------------- 115
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K L+P+ V+EA+ + +GHSF+V
Sbjct: 116 -----------------RIVRTKRFALKPMPVDEAVMQMNLLGHSFFV 146
[76][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 62.4 bits (150), Expect = 2e-08
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAG-PKEDVDEEDFQEYLKEVKMDTQ 347
LY++IDLV +K+ KL+K KE K I + + P E+ + E L + ++
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKERNNKTIHNNQFKNKESFPSENTESRFLDEALLKDGIEAS 134
Query: 348 LFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L E ++ ++ E+N PI+ EEA L+ + H FYV
Sbjct: 135 L--PEPSIKNKYFEMN----------------PISSEEARKQLDLIDHDFYV 168
[77][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 61.6 bits (148), Expect = 3e-08
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ KA+ +F +KE DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 KSKLEKAIHHFGDMVKEADVHLSVAKNPR----VPQQTAEVTVFA--NGTVIRAQERSQN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV +K+ +L++ KE+ PG E E L++ ++ L +
Sbjct: 75 LYASIDLVSNKLCRQLRRYKERHSDHHHSPGHRASITPTTE----EVLEDKSINGSLVEG 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E A+L P +R K + P+ +E+A L+ + H FY+
Sbjct: 131 KE------AKL----PKPGIRRKYFPMHPMNIEQAQHQLDLIDHDFYL 168
[78][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 61.6 bits (148), Expect = 3e-08
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 2/167 (1%)
Frame = +3
Query: 9 KVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLY 185
K+ KA NF ++E DV LS +Q EVT++ NG V+R ++ NLY
Sbjct: 23 KIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSENLY 76
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD-KE 362
A+IDLV +K+ +L+K KE+ S ++ + V E + + D L + KE
Sbjct: 77 ASIDLVANKLARQLRKYKERHNSHNVHNNQS--TKSVQNEKIENFSSS---DHSLIEGKE 131
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L P +R K ++P+T+E+A L+ + H FY+
Sbjct: 132 PHL-----------PNPGVRRKYFEMDPMTIEQARVQLDLIDHDFYL 167
[79][TOP]
>UniRef100_C4L5L1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sp. AT1b RepID=C4L5L1_EXISA
Length = 187
Score = 61.2 bits (147), Expect = 4e-08
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Frame = +3
Query: 105 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 284
++QKVEVTI + N ++R ED ++YAAIDLV DK+ +++K K K +G G+ G
Sbjct: 49 EKQKVEVTI-PMPNLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGR--GKEG- 104
Query: 285 KEDVDEEDFQEYLKEVK--MDT-QLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITV 455
EY K ++ DT ++D++E AEL ++R+K L+P+
Sbjct: 105 -------GVGEYFKSLEGPDDTPAVYDEDE------AEL------ELVRTKRFTLKPMDT 145
Query: 456 EEAIDALEAVGHSFYV 503
EEAI ++ +GHSF+V
Sbjct: 146 EEAILQMDMLGHSFFV 161
[80][TOP]
>UniRef100_C1MVN7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVN7_9CHLO
Length = 414
Score = 61.2 bits (147), Expect = 4e-08
Identities = 52/152 (34%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Frame = +2
Query: 50 GGGRHAVRSRRRHRHPRQEGAEGRGDHLHVAQRRG-ARGGCGEQPVRCHRSGLRQDPRQA 226
G G ++ RR R +E EG G+ +RRG +RGG + R G D
Sbjct: 164 GQGEGDPQAARRARGGEREAREGEGEAGRARERRGGSRGGDAKGDARAQGRGGIPDGGGG 223
Query: 227 PEDQGEGHQPRRLARPRRPQGGRG*GGLPGVPQGGQDGHSAV*QGGAAAAPVRRAEPHLP 406
E GEG Q R AR R + RG GG +GG G +GG A+P
Sbjct: 224 -ERGGEGVQIERRARRRARERARGRGGARARDRGGGGGEERGGRGGEGGGGGADADPRRR 282
Query: 407 RQRHALQDRG-----ARAHHRGGGH*RAGGCG 487
R+R RG AR RGG R GGCG
Sbjct: 283 RRRRERLRRGPEAQEARRRARGGAARRRGGCG 314
[81][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 60.8 bits (146), Expect = 5e-08
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ KA ++ +KE D+ LS + + Q EVTI+ NG V+R E+ N
Sbjct: 21 QAKIEKATHHYKDIVKEADIHLSIEKNPSVSL----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LY++IDLV +K+ KL+K KE+ +++ E D+ + DK
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKERNYKTNY----------INQFKNNESFPIESADSNVLDK 124
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
Q + A L P +++K + PI+ EEA L+ + H FYV
Sbjct: 125 TLFKQGREASL----PEPSIKNKYFEMNPISSEEARKQLDLIDHDFYV 168
[82][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 60.8 bits (146), Expect = 5e-08
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 2/168 (1%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK+ K F+ E+ VTLS K QK+EVTI ++ +VR E N++Y
Sbjct: 22 EKIGKLEKYFNPEA-EIHVTLSVE--------KDRQKIEVTI-PMKGNIVRAEQVSNDMY 71
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK--EDVDEEDFQEYLKEVKMDTQLFDK 359
A+IDLV + I +L+K K K P EDV ED D+
Sbjct: 72 ASIDLVEEVIERQLKKYKSKLKDMNQSAANFNPSFFEDVLNEDS--------------DE 117
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E+ N+ R K ++P+ EEA +E +GH+FYV
Sbjct: 118 ED--------------INITRVKRFAMKPMDAEEACVQMELLGHNFYV 151
[83][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 60.8 bits (146), Expect = 5e-08
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF--QEYLKEVKMDTQLF 353
LY++IDLV +K+ KL+K KE+ + + + F ++ L M++
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKER------------NNKTIHNKQFKNKDSLPIESMESNFL 122
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
DK ++ A L P +++K + PI+ +EA L+ + H FYV
Sbjct: 123 DKAFFIEGTEASL----PKPSIKNKYFEMTPISSDEARKQLDLIDHDFYV 168
[84][TOP]
>UniRef100_A5Z528 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5Z528_9FIRM
Length = 179
Score = 60.8 bits (146), Expect = 5e-08
Identities = 48/167 (28%), Positives = 83/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ K F+ + VDVTLS K EQKVEVTI ++ ++R E+ +++
Sbjct: 21 EEKIGKLDKYFAEETR-VDVTLSVN--------KNEQKVEVTI-PVKGRIIRAEEISDDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +ID+V + I +L K K K I + K+ + E + Y++ D + E
Sbjct: 71 YVSIDMVEETIERQLVKYKNKIIDK---------KKSIKEAFTETYIEADYED----EDE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+Q++ + ++K ++P+ EEA +E +GH+F+V
Sbjct: 118 DQIK-------------IKKTKRFGIKPMDPEEACVEMELLGHNFFV 151
[85][TOP]
>UniRef100_UPI00006DCB57 hypothetical protein CdifQ_04002839 n=1 Tax=Clostridium difficile
QCD-32g58 RepID=UPI00006DCB57
Length = 138
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/129 (31%), Positives = 66/129 (51%)
Frame = +3
Query: 117 VEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 296
+EVTI + ++R ED E++LYAAID+VCDK+ ++ K K K + + +
Sbjct: 1 MEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKV------KDKVQNNKSI 54
Query: 297 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDAL 476
E+ + D +D EE + N + + R K ++P++ EEAI +
Sbjct: 55 RFENLDFIDNSSEFDDYDYDDEE-------DENIV----IERRKKFNVKPMSSEEAILQM 103
Query: 477 EAVGHSFYV 503
E VGH+FY+
Sbjct: 104 ELVGHNFYM 112
[86][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 60.5 bits (145), Expect = 6e-08
Identities = 49/167 (29%), Positives = 84/167 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K V + H +E+ ++ + + +K KVEVTI T + +R ED ++
Sbjct: 22 ESKLSK-VEKYFHEDQELHARVNLK-----VYREKTAKVEVTIPT-GSVTLRAEDVSLDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + ++E + +M + F+KE
Sbjct: 75 YGSIDLVVDKIARQIRKNKTKIARK-----------------YREKVPTGEMFSTEFNKE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + E V+R+K + L+P+ VEEAI +E +GH F++
Sbjct: 118 EVEEAPAVE--------VVRTKNIELKPMDVEEAILQMELLGHDFFI 156
[87][TOP]
>UniRef100_B7CAG7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
3989 RepID=B7CAG7_9FIRM
Length = 177
Score = 60.5 bits (145), Expect = 6e-08
Identities = 39/132 (29%), Positives = 71/132 (53%)
Frame = +3
Query: 108 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK 287
+QK+EVTI T R ++R E +++LYAAIDL DK+ ++++ K + +
Sbjct: 49 KQKIEVTIPT-RYAILRAEVVDDDLYAAIDLAVDKLEDQIRRTKTRLTRKN--------- 98
Query: 288 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAI 467
+E L E +D +LF+ EE + V+R+K++V + ++++EAI
Sbjct: 99 --------KESLAEAFLDHELFNDEE-----------VDDDEVVRTKSIVPKEMSLDEAI 139
Query: 468 DALEAVGHSFYV 503
+E +GH F++
Sbjct: 140 MKMELLGHDFFI 151
[88][TOP]
>UniRef100_Q5HHR8 Uncharacterized protein SACOL0815 n=1 Tax=Staphylococcus aureus
subsp. aureus COL RepID=Y815_STAAC
Length = 190
Score = 60.5 bits (145), Expect = 6e-08
Identities = 48/167 (28%), Positives = 82/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ K F+ DV + T+ K+EVTI L+N +R E+ ++L
Sbjct: 22 EEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIEVTI-PLKNVTLRAEERNDDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA IDL+ +K+ +++K K + I+R R ++V + QE ++E ++D +D
Sbjct: 75 YAGIDLINNKLERQVRKYKTR-INR---KSRDRGDQEVFVAELQE-MQETQVDNDAYDDN 129
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E ++RSK L+P+ EEA+ + +GH F+V
Sbjct: 130 E--------------IEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFV 162
[89][TOP]
>UniRef100_Q2YSH7 Uncharacterized protein SAB0704 n=35 Tax=Staphylococcus aureus
RepID=Y704_STAAB
Length = 190
Score = 60.5 bits (145), Expect = 6e-08
Identities = 48/167 (28%), Positives = 82/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ K F+ DV + T+ K+EVTI L+N +R E+ ++L
Sbjct: 22 EEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIEVTI-PLKNVTLRAEERNDDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA IDL+ +K+ +++K K + I+R R ++V + QE ++E ++D +D
Sbjct: 75 YAGIDLINNKLERQVRKYKTR-INR---KSRDRGDQEVFVAELQE-MQETQVDNDAYDDN 129
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E ++RSK L+P+ EEA+ + +GH F+V
Sbjct: 130 E--------------IEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFV 162
[90][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 60.1 bits (144), Expect = 8e-08
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ +A+ +F +KE DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 ETKLERAIHHFDDLVKEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L++ KE+ G + + E E D+ L K
Sbjct: 75 LYASIDLVASKLARQLRRFKERHSDHGHRTTPTAANDVLLTERPTE-------DSLLEGK 127
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E QL P+ +R K + +++EEA LE + H FY+
Sbjct: 128 EAQL-----------PSPGVRRKYFAMPAMSLEEARHQLELIDHDFYL 164
[91][TOP]
>UniRef100_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
RepID=Q0B0B5_SYNWW
Length = 181
Score = 60.1 bits (144), Expect = 8e-08
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Frame = +3
Query: 45 LKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAK 224
+KE V LS G D KVEVTI L ++R E+ +++Y++ID+V +K+ +
Sbjct: 34 VKEAQVALSIEGED--------HKVEVTI-PLNGIILRGEEMSDDMYSSIDMVEEKLEKQ 84
Query: 225 LQKIKEKAI--SRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNR 398
++K K + +RGA G K+ + EE +E DK E++++
Sbjct: 85 IEKYKTRLYRSNRGA-----GLKKALAEEIKKE-----------LDKGEKIEK------- 121
Query: 399 IYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
V+RSK L+P+ VEEAI + +GHSF+V
Sbjct: 122 ---FKVVRSKRFALKPMDVEEAIMQMNLLGHSFFV 153
[92][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 60.1 bits (144), Expect = 8e-08
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LY++IDLV +K+ KL+K KE+ + F+ + DT+
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKER------------NNKIFHNNQFKNKESFLIADTESRFL 122
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E L + E + P +++K + PI+ EEA L+ + H FYV
Sbjct: 123 DEALLKDGIEAS--LPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYV 168
[93][TOP]
>UniRef100_C5NVZ2 Ribosome-associated factor Y n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NVZ2_9BACL
Length = 181
Score = 60.1 bits (144), Expect = 8e-08
Identities = 46/166 (27%), Positives = 84/166 (50%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E KV+K F+ +L E +V +A+ + ++K+E+T+ LR +R E+ +L
Sbjct: 22 ENKVSKLEKYFADSL-EANVYANAK-----VYKNNKKKIEITV-PLRGVTLRAEETNEDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAA+DLV DK+ +++K K K +G G + +E+ + ++L + E
Sbjct: 75 YAAVDLVVDKLERQMRKHKTKINRKGREKG---------------FAEEIILTSELEEAE 119
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFY 500
E +L ++ K + +EP+T EEA+ +E +GH F+
Sbjct: 120 ETT----LDLGKV--------KQLKVEPMTREEAVFQMELLGHDFF 153
[94][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YF17_DICT6
Length = 179
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNL 182
EK ++ F ++ ++V S + G K +VEVTI NG +++ +A +
Sbjct: 21 EKKLSRLSRFFDNIENIEVLFSE---EDWKDGSKRHRVEVTIKA--NGRIIKASEANQDF 75
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
+IDLV DK+ +L+++KEK + +G RA E ++E+ + ++ +K
Sbjct: 76 RTSIDLVVDKLETQLKRLKEKLVDKGR---RA------------ESIREILAEKEVEEKP 120
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ V++ K +L+P+ VEEAI +E +GH F++
Sbjct: 121 Q----------------VVKVKRFLLKPMDVEEAILQMELLGHDFFI 151
[95][TOP]
>UniRef100_Q03M66 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Streptococcus thermophilus LMD-9 RepID=Q03M66_STRTD
Length = 182
Score = 59.3 bits (142), Expect = 1e-07
Identities = 49/167 (29%), Positives = 83/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K V + H +E+ ++ + + +K KVEVTI T + +R ED ++
Sbjct: 22 ESKLSK-VEKYFHEDQELHARVNLK-----VYREKTAKVEVTIPT-GSVTLRAEDVSLDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + ++E + +M + F+KE
Sbjct: 75 YGSIDLVVDKIARQIRKNKTKIARK-----------------YREKVPTGEMFSTEFNKE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + E V+R K + L+P+ VEEAI +E +GH F++
Sbjct: 118 EVEEAPAVE--------VVRIKNIELKPMDVEEAILQMELLGHDFFI 156
[96][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 59.3 bits (142), Expect = 1e-07
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF--QEYLKEVKMDTQLF 353
LY++IDLV +K+ KL+K KE+ + + + F ++ L M++
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKER------------NNKTIHNKQFKNKDSLPIESMESNFL 122
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
DK + A L P +++K + PI+ +EA L+ + H FYV
Sbjct: 123 DKAFFKEGTEASL----PEPSIKNKYFEMTPISSDEARKQLDLIDHDFYV 168
[97][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 59.3 bits (142), Expect = 1e-07
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF--QEYLKEVKMDTQLF 353
LY++IDLV +K+ KL+K KE+ + + + F ++ L M++
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKER------------NNKTIHNKQFKNKDSLPIESMESNFL 122
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
DK + A L P +++K + PI+ +EA L+ + H FYV
Sbjct: 123 DKALFKEGTEASL----PEPSIKNKYFEMTPISSDEARKQLDLIDHDFYV 168
[98][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 59.3 bits (142), Expect = 1e-07
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Frame = +3
Query: 9 KVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLY 185
K+ +A ++F ++E DV LS +Q EVT++ NG V+R ++ NLY
Sbjct: 23 KLERATSHFGDAIREADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSENLY 76
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+IDLV K+ +L+K KE+ G + EE E + E + + KE
Sbjct: 77 ASIDLVVGKLARQLRKWKERHADHHHSHGHSASLTPSTEEVSDESVVEGSL---VDGKEA 133
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
QL P +R K + P+T+++A L+ + H FY+
Sbjct: 134 QL-----------PEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYL 168
[99][TOP]
>UniRef100_C2KX79 Ribosome-associated inhibitor A n=1 Tax=Oribacterium sinus F0268
RepID=C2KX79_9FIRM
Length = 176
Score = 59.3 bits (142), Expect = 1e-07
Identities = 48/167 (28%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K + F +VTLS + K QK+EVTI ++ V+R E+A ++
Sbjct: 21 EKKLGK-LDKFFQAETPCNVTLSTQ--------KDMQKIEVTI-PVKGSVIRAEEATPDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV D + +++K K K I R + ++ E + D+E
Sbjct: 71 YQSIDLVVDVLERQIRKYKNKLIQR--------------HQAASDFSSEFIEEKPAQDEE 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E ++R+K + L+P+T EEA +E +GHSF+V
Sbjct: 117 E--------------IKIVRTKHIDLKPMTAEEACLQMELLGHSFFV 149
[100][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 59.3 bits (142), Expect = 1e-07
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ +AV +F +KE DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 QSKLERAVQHFDDMVKEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAI----SRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ 347
LYA+IDLV K+ +L++ KE+ S G P + + + +D
Sbjct: 75 LYASIDLVASKLCRQLRRFKERHSDHHHSNGHRASETPPTDAIAD--------AAPIDGS 126
Query: 348 LFD-KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L D KE QL P +R K + P+++EEA L+ + H FY+
Sbjct: 127 LLDGKEVQL-----------PDPGVRRKYFAMPPMSLEEARHQLDVIDHDFYL 168
[101][TOP]
>UniRef100_UPI00004C2450 COG1544: Ribosome-associated protein Y (PSrp-1) n=1
Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2450
Length = 182
Score = 58.9 bits (141), Expect = 2e-07
Identities = 47/167 (28%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F+ +E+D ++ + + ++ KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVEVTI-PLDSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKVPTGQVFTTE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + E++ I V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAE----EVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[102][TOP]
>UniRef100_C0WUJ7 Ribosome-associated inhibitor protein Y n=3 Tax=Lactobacillus
RepID=C0WUJ7_LACBU
Length = 194
Score = 58.9 bits (141), Expect = 2e-07
Identities = 43/133 (32%), Positives = 69/133 (51%)
Frame = +3
Query: 105 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 284
K+ KVEVTI L +R E+ N+LYA++DLV DK+ +++K K K +
Sbjct: 57 KQAKVEVTI-PLPFLTLRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSR------- 108
Query: 285 KEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEA 464
E+ F+ L+ V D Q + Q QF +V+R+K + L+P+ EEA
Sbjct: 109 -----EKGFKN-LEFVPNDDQTTSDSDDNQSQF---------DVVRTKRLALKPMDNEEA 153
Query: 465 IDALEAVGHSFYV 503
I ++ +GH F++
Sbjct: 154 ILQMDMLGHDFFI 166
[103][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 58.9 bits (141), Expect = 2e-07
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ KA ++ +KE D+ LS + Q EVTI+ NG V+R E+ N
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAEVTIFA--NGTVIRAEEKTEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LY++IDLV +K+ KL+K KE+ + F+ DT+
Sbjct: 75 LYSSIDLVSNKLCRKLRKYKER------------NNKIFHNNQFKNKESFPIADTESRFL 122
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E L + E + P +++K + PI+ EEA L+ + H FYV
Sbjct: 123 DEALLKDGIEAS--LPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYV 168
[104][TOP]
>UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
tauri RepID=Q00W70_OSTTA
Length = 184
Score = 58.9 bits (141), Expect = 2e-07
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Frame = +3
Query: 9 KVAKAVANF-SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
K+ +A ++ S ++EVDV SARGG+ G+ G E K EVT+ R + + NLY
Sbjct: 72 KIGRACSHVDSRDIREVDVRCSARGGE-GSKGGVEHKTEVTVLMTRGPTLHADGVGENLY 130
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGR--AGPK------EDVDEED 308
A ID D + ++K KEK +GA A PK EDVD +D
Sbjct: 131 ATIDQCADIVTRSIRKHKEKHGGKGARHAAHDASPKEALLDAEDVDGDD 179
[105][TOP]
>UniRef100_Q5XAQ7 Ribosome-associated factor Y n=10 Tax=Streptococcus pyogenes
RepID=RAFY_STRP6
Length = 182
Score = 58.9 bits (141), Expect = 2e-07
Identities = 47/167 (28%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F+ +E+D ++ + + ++ KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVEVTI-PLDSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKVPTGQVFTTE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + E++ I V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAE----EVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[106][TOP]
>UniRef100_UPI0001B5A5D6 ribosomal subunit interface protein n=1 Tax=Staphylococcus aureus
subsp. aureus str. CF-Marseille RepID=UPI0001B5A5D6
Length = 163
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/137 (29%), Positives = 72/137 (52%)
Frame = +3
Query: 93 THGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG 272
T+ K+EVTI L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R
Sbjct: 19 TYSNSATKIEVTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INR---KS 73
Query: 273 RAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPIT 452
R ++V + QE ++E ++D +D E ++RSK L+P+
Sbjct: 74 RDRGDQEVFVAELQE-MQETQVDNDAYDDNE--------------IEIIRSKEFSLKPMD 118
Query: 453 VEEAIDALEAVGHSFYV 503
EEA+ + +GH F+V
Sbjct: 119 SEEAVLQMNLLGHDFFV 135
[107][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 58.5 bits (140), Expect = 2e-07
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Frame = +3
Query: 9 KVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLY 185
K+ +A ++F ++E DV LS +Q EVT++ NG V+R ++ NLY
Sbjct: 23 KLERATSHFGDAIREADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSENLY 76
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+IDLV K+ +L+K KE+ G + EE E E + + KE
Sbjct: 77 ASIDLVVGKLARQLRKWKERHADHHHSHGHSASLTPSTEEVSDESAVEGSL---VDGKEA 133
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
QL P +R K + P+T+++A L+ + H FY+
Sbjct: 134 QL-----------PEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYL 168
[108][TOP]
>UniRef100_A2BV60 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=A2BV60_PROM5
Length = 194
Score = 58.5 bits (140), Expect = 2e-07
Identities = 46/167 (27%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ KA ++ +KE D+ LS ++ Q EVTI+ ++R E+ NL
Sbjct: 21 EAKIEKATHHYKDIVKEADIHLSIEKNPRLSY----QTAEVTIFA-SGTIIRAEEKTENL 75
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y++IDLV +K+ KL+K KE+ + K + E+L + D +F+ +
Sbjct: 76 YSSIDLVSNKLCRKLRKYKERHYKNLNYNLE---KNKHSFTNTNEHLDSI--DKNIFNDK 130
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + P +++K + PI++EEA L+ + H FYV
Sbjct: 131 REAK---------LPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYV 168
[109][TOP]
>UniRef100_C6D4V5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Paenibacillus sp. JDR-2 RepID=C6D4V5_PAESJ
Length = 182
Score = 58.2 bits (139), Expect = 3e-07
Identities = 48/166 (28%), Positives = 82/166 (49%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
+K+++ F E VTLS G + VEVTI L ++R ED ++Y
Sbjct: 22 KKISRLEKYFEAPASETTVTLSVTKG--------KHAVEVTI-PLVGVMLRAEDKSEDMY 72
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
++ID+V DK+ +++K K K R E + F+E L + + + D+E+
Sbjct: 73 SSIDVVVDKLERQIRKHKTKM-------NRKFRHESGVKALFKEGLSQTAVS--VMDEED 123
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L+ ++R+K +L+P+ VEEAI + VGH+F+V
Sbjct: 124 ELE-------------LVRTKRFMLKPMDVEEAILQMNMVGHNFFV 156
[110][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 58.2 bits (139), Expect = 3e-07
Identities = 49/167 (29%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ T + +V ++ + + K KVEVTI L N V+R E+ +L
Sbjct: 22 EKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI-PLPNLVLRAEETSGDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDL+ DK+ +++K K K + G E D+ Y +V T + E
Sbjct: 75 YASIDLIVDKLERQIRKHKTKVNRKFRDKGA--------ERDYFAY-SDVNGSTPPEENE 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ ++R+K L+P+ EEA+ + +GHSFYV
Sbjct: 126 SD-----------FDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYV 161
[111][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/167 (28%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ + + FS + + V L+ R D G++ +VEV + + NG++R E+ ++
Sbjct: 22 EEKLTR-LDRFSDQITDARVVLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHADM 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAID D + +L+K K K + A P Q L E ++ L D E
Sbjct: 77 YAAIDRASDVLERQLRKFKTKYLRHRQ---EAAPPP-------QPGLAEADVNAGLDDTE 126
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ ++R+K L P++ E+A+ +EA+GH FYV
Sbjct: 127 -------------FRPEIVRTKRFDLRPMSPEDAVTQMEALGHDFYV 160
[112][TOP]
>UniRef100_B9MLV8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Anaerocellum thermophilum DSM 6725
RepID=B9MLV8_ANATD
Length = 181
Score = 57.4 bits (137), Expect = 5e-07
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLK---EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAE 173
+E++ K ++ +K +V VTLS K VEVTI ++R E+
Sbjct: 17 KERIEKKLSKLERYIKLNTDVHVTLSVE--------KISHIVEVTI-PFHGMILRAEERS 67
Query: 174 NNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
N++Y+AIDLV D + +++K K K R D E + M +L
Sbjct: 68 NDMYSAIDLVVDTLERQIRKFKTKIAKRAK-----------DAESLR------YMTFELE 110
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ E+++Q + +E + ++K ++P++VEEAI + +GH+F+V
Sbjct: 111 EPEKEVQEENSEF------RIAKTKRFPIKPMSVEEAILQMNLLGHNFFV 154
[113][TOP]
>UniRef100_B9DV32 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus uberis 0140J RepID=B9DV32_STRU0
Length = 182
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/167 (28%), Positives = 78/167 (46%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+AK F E+D ++ + + +K KVEVTI L + ++R ED ++
Sbjct: 22 EAKLAKIEKYFVED-SEIDTRVNLK-----VYREKTAKVEVTII-LGSMILRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKVPTGQVFRSE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + E+ V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FETE----EVEEGSEVKVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[114][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 57.4 bits (137), Expect = 5e-07
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
E K+ +AV ++ + E DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 ESKLERAVQHYDEMVVEADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV +K+ +L++ KE+ G E L + +D L D
Sbjct: 75 LYASIDLVANKLSRQLRRYKERHSDHHHSHGHRASTTPTTE----AVLDDSAVDGSLLDG 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E A L P +R K + P++VEEA L+ + H F++
Sbjct: 131 KE------AHL----PDPGVRRKYFPMPPMSVEEARHQLDLIDHDFFL 168
[115][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 57.4 bits (137), Expect = 5e-07
Identities = 49/167 (29%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ T + +V ++ + + K KVEVTI L N V+R E+ +L
Sbjct: 22 EKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI-PLPNLVLRAEETSGDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDL+ DK+ +++K K K + G E D+ Y +V T + E
Sbjct: 75 YASIDLIVDKLERQIRKHKTKVNRKFRDKGA--------ERDYFAY-SDVNGSTPPEENE 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ ++R+K L+P+ EEA+ + +GHSFYV
Sbjct: 126 GD-----------FDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYV 161
[116][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 57.4 bits (137), Expect = 5e-07
Identities = 51/167 (30%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K F+ D L+AR + + +K KVEVTI T + +R ED ++
Sbjct: 22 ESKLSKVEKYFNE-----DQELNARV-NLKVYREKTAKVEVTIPT-GSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + P +V DF
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIARKHR---EKVPTGEVFSADFNN--------------- 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
EQ++ A V+R+K + L+P+ VEEAI +E +GH F++
Sbjct: 117 EQVEEAPA-------VEVVRTKNIELKPMDVEEAILQMELLGHDFFI 156
[117][TOP]
>UniRef100_B0P2P9 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0P2P9_9CLOT
Length = 179
Score = 57.4 bits (137), Expect = 5e-07
Identities = 42/150 (28%), Positives = 76/150 (50%)
Frame = +3
Query: 54 VDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 233
V+VTLS + G QK+EVTI ++ ++R E+ ++Y +IDLV D I ++++
Sbjct: 40 VNVTLSVQKG--------RQKIEVTI-PMKGHIIRAEEGSEDMYVSIDLVVDVIERQIRR 90
Query: 234 IKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPAN 413
K + +++ + G + +E +++ED D E+ R
Sbjct: 91 YKTRLMNQ-KYDGTSFKQEFMEQED---------------DVEDDEIR------------ 122
Query: 414 VMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++RSK ++P+ VEEA +E +GH F+V
Sbjct: 123 IIRSKKFAIKPMDVEEACVQMELLGHDFFV 152
[118][TOP]
>UniRef100_C0MH43 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Steptococcus equi subsp. zooepidemicus H70
RepID=C0MH43_STRS7
Length = 182
Score = 57.0 bits (136), Expect = 7e-07
Identities = 49/167 (29%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F +E+D ++ + + +K KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVEVTI-PLGSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E +Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKVSTSQVFTSE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + Q E I V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAE-QVEETPEI---KVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[119][TOP]
>UniRef100_B4U4G1 Ribosomal subunit interface protein n=1 Tax=Streptococcus equi
subsp. zooepidemicus MGCS10565 RepID=B4U4G1_STREM
Length = 182
Score = 57.0 bits (136), Expect = 7e-07
Identities = 48/167 (28%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K + + +E+D ++ + + +K KVEVTI L + +R ED ++
Sbjct: 22 ESKLTK-IEKYFVVEQEIDARVNLK-----VYREKTAKVEVTI-PLGSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E +Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKMSTSQVFTSE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + Q E I V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAE-QAEETPEI---KVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[120][TOP]
>UniRef100_Q3CZ63 Ribosomal subunit interface protein n=6 Tax=Streptococcus
agalactiae RepID=Q3CZ63_STRAG
Length = 184
Score = 57.0 bits (136), Expect = 7e-07
Identities = 44/167 (26%), Positives = 81/167 (48%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K V + + +E+D ++ + + +K KVEVTI + + +R ED ++
Sbjct: 22 ETKLSK-VEKYFNEAQELDTRVNLK-----VYREKTAKVEVTIL-IDSITLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + ++E + ++ T F+ E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKK-----------------YREKIPASQVFTTEFEAE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K V L+P+ VEEA+ +E +GH F++
Sbjct: 118 PD--------EEAVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFI 156
[121][TOP]
>UniRef100_A6CQE4 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. SG-1
RepID=A6CQE4_9BACI
Length = 189
Score = 57.0 bits (136), Expect = 7e-07
Identities = 50/167 (29%), Positives = 83/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F+ T + DV ++ + + K+ KVEVTI + + V+R E+ ++
Sbjct: 22 ENKIGKLNRYFNET-PDADVHVNLK-----VYPDKKTKVEVTI-PMPHLVLRAEERHEDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAIDL+ DK+ +++K K K + G PKE QE L +++ + + E
Sbjct: 75 YAAIDLIVDKLERQIRKHKTKVNRKMREKG--SPKEFFAA---QEGLTTSQLNEKARETE 129
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E V+R+K L+P+ EEAI + +GHSF++
Sbjct: 130 EN-------------DEVVRTKQFNLKPMDSEEAILQMNLLGHSFFI 163
[122][TOP]
>UniRef100_C6SS06 Putative ribosome-associated protein n=2 Tax=Streptococcus mutans
RepID=C6SS06_STRMN
Length = 182
Score = 56.6 bits (135), Expect = 9e-07
Identities = 42/166 (25%), Positives = 76/166 (45%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
E K + + + +E+D ++ + + +K KVEVTI L +R ED ++Y
Sbjct: 22 ESKLKKIEKYFNAEQELDARINLK-----VYREKTAKVEVTI-PLAPVTLRAEDVSQDMY 75
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
+IDLV DKI +++K K K + +E K +F E
Sbjct: 76 GSIDLVVDKIERQIRKNKTKIAKKH---------------------REKKPAAHVFTAEF 114
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + E+ V+R+K + L+P+ +EEA ++ +GH F++
Sbjct: 115 EAE----EMEEAPAIKVVRTKNITLKPMDIEEARLQMDLLGHDFFI 156
[123][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/166 (28%), Positives = 77/166 (46%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK + + T E+ V L ++Q+VEVTI + ++R E+ +++Y
Sbjct: 21 EKKLSKLERYFDTFPEIKVNLKVYS--------EKQRVEVTI-PFTDLLLRAEETHSDMY 71
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
AAIDLV DKI +++K K K + G PK + L+EVK D
Sbjct: 72 AAIDLVVDKIERQIRKHKTKVNRKLREKG--SPKTTFILTESAATLEEVKEDD------- 122
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K L+P+ VEEAI ++ +GH+F+V
Sbjct: 123 --------------LELVRTKRFDLKPMDVEEAILQMDMLGHNFFV 154
[124][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 56.6 bits (135), Expect = 9e-07
Identities = 45/167 (26%), Positives = 83/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ T + +V ++ + + K KVEVTI L N V+R E+ +L
Sbjct: 22 EKKIDKLERYFNET-PDANVHVNLK-----VYSDKSAKVEVTI-PLPNLVLRAEETNGDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA++DL+ DK+ +++K K K + ++ E+D+ + E+ T
Sbjct: 75 YASVDLIADKLERQIRKHKTKVNRKF--------RDKGSEKDYFAF-SEINDST------ 119
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + Y ++R+K+ L+P+ EEA+ + +GH+F+V
Sbjct: 120 -----PSEETDSDYDIEIVRTKSFSLKPMDSEEAVLQMNLLGHNFFV 161
[125][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 56.6 bits (135), Expect = 9e-07
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ A+ F DV L D + + VEVT++ +RN VVRV + +++
Sbjct: 22 EEKIGDALKVFDIQPMTCDVVLRV---DKNPSNLERKSVEVTVF-VRNSVVRVVSSGDDM 77
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWP----GRAGPKEDVDEEDFQEYLKEVKMDTQL 350
Y AID +K+ +L+K K + + + GRA +E++ ++T
Sbjct: 78 YGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQEELAN----------LIETPA 127
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
D ++QL +R K + L P+T EEA+ + +GH FYV
Sbjct: 128 EDLDDQL---------------VREKYIDLLPMTEEEALVQTDLLGHDFYV 163
[126][TOP]
>UniRef100_A7B7M8 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
29149 RepID=A7B7M8_RUMGN
Length = 185
Score = 56.6 bits (135), Expect = 9e-07
Identities = 43/167 (25%), Positives = 82/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ E+ VTLS K+ QK+EVTI ++ ++R E +++
Sbjct: 21 EQKLGKLERYFTPET-EIIVTLSVE--------KERQKIEVTI-PVKGNIIRSEQTSDDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y ++DLV + I +L+K K K ++R + P +F++ E + DT + D+
Sbjct: 71 YVSVDLVEEVIERQLRKYKNKLVARS----QGHPTASGSGNNFKKEFFESEDDTSVDDE- 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K ++P+ E+A ++ +GH+F+V
Sbjct: 126 ---------------IRIVRTKRFGIKPMYPEDACIQMDLLGHAFFV 157
[127][TOP]
>UniRef100_A5KKP2 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
27756 RepID=A5KKP2_9FIRM
Length = 198
Score = 56.6 bits (135), Expect = 9e-07
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ E+ VTLS G QK+EVTI ++ ++R E +++
Sbjct: 34 EQKLGKLERYFTPET-EIIVTLSVEKG--------RQKIEVTI-PVKGSIIRSEQTSSDM 83
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRG-AWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
Y +IDLV + I +L+K K K +++ P A P + +E ++ D + D
Sbjct: 84 YVSIDLVEEVIERQLRKYKNKLVAKSQGHPTAAVPSGSIKKEF-------IESDDESSDD 136
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E ++R+K ++P+ E+A +E +GHSF+V
Sbjct: 137 DE--------------IRIVRTKKFGIKPMFPEDACIQMELLGHSFFV 170
[128][TOP]
>UniRef100_C0M6F8 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus equi subsp. equi 4047
RepID=C0M6F8_STRE4
Length = 182
Score = 56.2 bits (134), Expect = 1e-06
Identities = 46/167 (27%), Positives = 77/167 (46%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F +E+D ++ + + +K KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVEVTI-PLGSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E +Q+F E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKKH---------------------REKMSTSQVFTSE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ ++ V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAEKA----EETPEIKVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[129][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 56.2 bits (134), Expect = 1e-06
Identities = 46/166 (27%), Positives = 79/166 (47%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK + + T EV V L +Q+VEVTI + ++R E+ +++Y
Sbjct: 21 EKKLSKIERYFDTFPEVKVNLKVYSD--------KQRVEVTI-PFTDLLLRAEETHSDMY 71
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
AAIDLV DKI +++K K K + G A + ++ QE ++E +++
Sbjct: 72 AAIDLVVDKIERQIRKHKTKVNRKLREKGSAKTAFILPDQLGQEEVQEDELE-------- 123
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K L+P+ VEEAI ++ +GH+F+V
Sbjct: 124 ----------------LVRTKRFDLKPMDVEEAILQMDMLGHNFFV 153
[130][TOP]
>UniRef100_A4XJ41 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Caldicellulosiruptor saccharolyticus DSM 8903
RepID=A4XJ41_CALS8
Length = 182
Score = 56.2 bits (134), Expect = 1e-06
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLK---EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAE 173
++++ K ++ +K +V VTLS K VEVTI ++R E+A
Sbjct: 18 KDRIEKKLSKLERYVKMNCDVHVTLSVE--------KIRHIVEVTI-PFYGMILRAEEAS 68
Query: 174 NNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
N++Y+AIDLV D + +++K K K R +D + + + +E + +T
Sbjct: 69 NDMYSAIDLVVDSLERQIRKFKTKIAKRA---------KDAESLRYMTFEEEAQQET--- 116
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++EE + + A ++K ++P++V+EAI + +GHSF+V
Sbjct: 117 NQEENGEFKIA-----------KTKRFPIKPMSVDEAILQMNLLGHSFFV 155
[131][TOP]
>UniRef100_Q3DA79 Ribosomal subunit interface protein n=2 Tax=Streptococcus
agalactiae RepID=Q3DA79_STRAG
Length = 184
Score = 56.2 bits (134), Expect = 1e-06
Identities = 44/167 (26%), Positives = 80/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K++K F+ +E+D ++ + + +K KVEVTI + + +R ED ++
Sbjct: 22 ETKLSKVEKYFNEE-QELDTRVNLK-----VYREKTAKVEVTIL-IDSITLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + ++E + ++ T F+ E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKK-----------------YREKIPASQVFTTEFEAE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K V L+P+ VEEA+ +E +GH F++
Sbjct: 118 PD--------EEAVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFI 156
[132][TOP]
>UniRef100_B6FRG1 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM
1787 RepID=B6FRG1_9CLOT
Length = 178
Score = 56.2 bits (134), Expect = 1e-06
Identities = 47/167 (28%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ E+ VTLS K+ QK+EVTI ++ ++R E +++
Sbjct: 21 EQKLGKLERYFTPDT-EIIVTLSVE--------KERQKIEVTI-PVKGHIIRSEQVSDDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV + I +L+K K K I+R G +FQ E + DT D+
Sbjct: 71 YVSIDLVEEVIERQLRKYKNKLIARQQEGG-----------NFQSEFFEAEQDTSNNDE- 118
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K ++P+ E+A +E +GH+F+V
Sbjct: 119 ---------------IKIIRTKRFGIKPMFPEDACVQMELLGHNFFV 150
[133][TOP]
>UniRef100_B5XMH0 Ribosomal subunit interface protein n=1 Tax=Streptococcus pyogenes
NZ131 RepID=B5XMH0_STRPZ
Length = 182
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/167 (27%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F+ +E+D ++ + + ++ KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVEVTI-PLDSVTLRAEDVSXDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +I LV DKI +++K K K + +E Q+F E
Sbjct: 75 YGSIXLVVDKIERQIRKNKTKIAKKH---------------------REKVPTGQVFTTE 113
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + E++ I V+R+K V L+P+ VEEA +E +GH F++
Sbjct: 114 FEAE----EVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFI 156
[134][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ KA+ +F ++E DV LS + +Q EVT++ NG V+R ++ N
Sbjct: 21 QSKLEKAIHHFDGIVQEADVHLSIAKNPS----VPQQIAEVTVFA--NGTVIRAQERSQN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDLV K+ +L+K KE+ G + E +++ +D+ L
Sbjct: 75 LYASIDLVATKLCRQLRKYKERHSDHHHSHGHSASLTPTTE----AVVEDKAIDSSLIQG 130
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+E A L P +R K + P++ E+A L+ + H FY+
Sbjct: 131 KE------AHL----PTPGIRRKYFSMPPMSTEQARHQLDLIDHDFYM 168
[135][TOP]
>UniRef100_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446 RepID=C8WT44_ALIAC
Length = 180
Score = 55.8 bits (133), Expect = 2e-06
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTL-KEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVV-RVEDAEN 176
++K+A+ F K++ VT++ G D +VE+T++ NGV+ R E+
Sbjct: 21 DKKIARLTRYFDREADKQIYVTMAVEGLD--------HRVEMTVFV--NGVIFRAEEKSP 70
Query: 177 NLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
++YA+IDL DK+ ++ + KEK R G + D + E E+K
Sbjct: 71 DMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAETDDEIK------- 123
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
V+R K ++P+ VEEA+ +E +GH F+V
Sbjct: 124 -------------------VVRVKRFPIKPMDVEEAVLQMELLGHDFFV 153
[136][TOP]
>UniRef100_C7QZG8 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Jonesia
denitrificans DSM 20603 RepID=C7QZG8_JONDD
Length = 219
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK++K +A ++ T + VDV ++ + ++VE+T+ + V+R E A ++
Sbjct: 21 EEKLSK-IAQYAPTARRVDVEVTHEYNPR--QSARSERVELTVRD-KGPVIRAEAASDDR 76
Query: 183 YAAIDLVCDKIRAKLQKIKE-KAISRGAWPGRAGPKEDVDEEDF---------QEYLKEV 332
+ A+DL DK++ +L++ E K S+ P + +D+D + +E V
Sbjct: 77 FGALDLALDKLQERLRRAHERKYTSKRRIPRKLEVPKDLDAIEMIPDPEPPTQEEATPSV 136
Query: 333 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
TQ E ++ Q + ++R K P+TV++AID +E VGH F++
Sbjct: 137 PHPTQ---PGETVEVQLGD-----SPVIIRQKLHNASPMTVDDAIDEMELVGHDFFL 185
[137][TOP]
>UniRef100_C0X601 Ribosome-associated inhibitor protein Y n=22 Tax=Enterococcus
faecalis RepID=C0X601_ENTFA
Length = 189
Score = 55.8 bits (133), Expect = 2e-06
Identities = 49/167 (29%), Positives = 81/167 (48%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K FS + E V ++ + + +K KVEVTI L V+R E+ +L
Sbjct: 28 EKKVGKLERYFSDS-PEATVHVNLK-----VYTEKTAKVEVTI-PLPYLVLRAEETSPDL 80
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DK+ +++K K K + GR K V F
Sbjct: 81 YASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAV------------------FLVG 122
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E+ + +EL +++R+K + L+P+ EEA+ + +GH+F++
Sbjct: 123 EETEETPSEL------DIVRTKRLSLKPMDSEEAVLQMNMLGHNFFI 163
[138][TOP]
>UniRef100_B7DUH5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius LAA1
RepID=B7DUH5_9BACL
Length = 180
Score = 55.8 bits (133), Expect = 2e-06
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTL-KEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVV-RVEDAEN 176
++K+A+ F K++ VT++ G D +VE+T++ NGV+ R E+
Sbjct: 21 DKKIARLTRYFDREADKQIYVTMAVEGLD--------HRVEMTVFV--NGVIFRAEEKSP 70
Query: 177 NLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 356
++YA+IDL DK+ ++ + KEK R G + D + E E+K
Sbjct: 71 DMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAETDDEIK------- 123
Query: 357 KEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
V+R K ++P+ VEEA+ +E +GH F+V
Sbjct: 124 -------------------VVRVKRFPIKPMDVEEAVLQMELLGHDFFV 153
[139][TOP]
>UniRef100_B5CNW3 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CNW3_9FIRM
Length = 186
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ E++VTLS G QK+EVTI ++ ++R E +N+
Sbjct: 21 EQKLGKLERYFTPET-EINVTLSVEKG--------RQKIEVTI-PVKGNIIRSEQTSDNM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE-EDFQEYLKEVKMDTQLFDK 359
Y +IDLV + I +L+K K K ++R + P F++ E + D +
Sbjct: 71 YVSIDLVEEVIERQLRKYKNKLVAR----SQGHPTSYTSTGNSFRKEFFETEDDAA---E 123
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++++Q ++R+K ++P+ E+A +E +GHSF+V
Sbjct: 124 DDEIQ-------------IVRTKKFGIKPMFPEDACIQMELLGHSFFV 158
[140][TOP]
>UniRef100_A6BHR0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
13814 RepID=A6BHR0_9FIRM
Length = 178
Score = 55.8 bits (133), Expect = 2e-06
Identities = 50/167 (29%), Positives = 77/167 (46%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F+ E+ VTLS + G QK+EVTI ++ G+VR E +++
Sbjct: 21 ESKLGKLGRYFTPNT-EIHVTLSVQKG--------HQKIEVTI-PVKGGLVRSEQESSDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV + I +L+K K K ++R G +E D ED E E+K
Sbjct: 71 YVSIDLVEEVIERQLRKYKNKLVAREQEGGNF-KQEFFDAEDNIEDDGEIK--------- 120
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++R+K +P+ E+A +E +GH FYV
Sbjct: 121 -----------------IVRTKKFGFKPMYPEDACVQMELLGHDFYV 150
[141][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENN 179
+ K+ +A +F + ++E DV LS +Q EVT++ NG V+R ++ N
Sbjct: 21 QTKLERATHHFGNAVREADVHLSVARNPR----VPQQTAEVTVFA--NGTVIRAQERSEN 74
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDK 359
LYA+IDL K+ +L++ KE+ G + E V D+Q+
Sbjct: 75 LYASIDLAASKLARQLRRWKERHSDHHHSHGHSASTTPATE--------AVTDDSQV--D 124
Query: 360 EEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
LQ + AEL P +R K + P+++EEA L+ + H FY+
Sbjct: 125 GSLLQGREAEL----PDPGVRRKYFAMPPMSLEEARRQLDLIDHDFYL 168
[142][TOP]
>UniRef100_C8NWC8 S30AE family protein n=1 Tax=Corynebacterium genitalium ATCC 33030
RepID=C8NWC8_9CORY
Length = 224
Score = 55.5 bits (132), Expect = 2e-06
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +3
Query: 114 KVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK-EKAISRGAWPGRAGPKE 290
++++T T + + R E E++ YAA++ K+ L+K+K + IS G G PK
Sbjct: 70 RIQITA-TGKGHLARAEAKEDSFYAALESAIGKMERSLRKVKVRREISMG---GHRAPKS 125
Query: 291 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAE-LNRIYPANVMRSKTVVLEPITVEEAI 467
E E + E + Q +++++ ++AE +N P V+R+K P++V+EA+
Sbjct: 126 TY--EVTSELVAEAEQARQ--EQDDRYADKYAESINENLPGQVVRTKEHPATPMSVDEAL 181
Query: 468 DALEAVGHSFYV 503
+E VGH FY+
Sbjct: 182 SEMELVGHDFYL 193
[143][TOP]
>UniRef100_C5VNV1 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum D
str. 1873 RepID=C5VNV1_CLOBO
Length = 178
Score = 55.5 bits (132), Expect = 2e-06
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVV-RVEDAENN 179
E K++K F+ +K + TLS + K Q VEVTI NGV+ R E+A N+
Sbjct: 21 ERKLSKLDKYFNPNVKVI-TTLSVQ--------KSRQIVEVTIPF--NGVILRAEEANND 69
Query: 180 LYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ---EYLKEVKMDTQL 350
+YAAIDLV +K+ +++K K K R + D FQ EY+ +
Sbjct: 70 MYAAIDLVLEKLERQIRKQKTKLEKR----------KHGDALKFQFIPEYIPK------- 112
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
D E+ ++ + ++++K ++P++ EEA+ +E +GH+F+V
Sbjct: 113 -DAEDNVE-----------SKIVKTKKFAVKPMSNEEAVLQMELLGHNFFV 151
[144][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 55.5 bits (132), Expect = 2e-06
Identities = 49/166 (29%), Positives = 80/166 (48%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK + + T EV V L +Q+VEVTI + ++R E+ +++Y
Sbjct: 21 EKKLSKLERYFDTFPEVKVNLKVYSD--------KQRVEVTI-PFTDLLLRAEETHSDMY 71
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
AAIDLV DK+ +++K K K + G PK + L+EV KE+
Sbjct: 72 AAIDLVVDKVERQIRKHKTKVNRKLREKG--SPKTAFILTEPAATLEEV--------KED 121
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+L+ ++R+K L+P+ VEEAI ++ +GH+F+V
Sbjct: 122 ELE-------------LVRTKRFDLKPMDVEEAILQMDMLGHNFFV 154
[145][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 55.5 bits (132), Expect = 2e-06
Identities = 46/167 (27%), Positives = 75/167 (44%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ DV + T+ K+EVTI L+N +R E+ ++L
Sbjct: 22 EDKIGKLERYFN------DVPNAVAHVKVKTYQNSTTKIEVTI-PLKNVTLRAEERHDDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA IDLV K+ +++K K + + G + E F ++E
Sbjct: 75 YAGIDLVTSKLERQVRKYKTRVNRKHKTHG--------EPEAFVAEVQEA--------PP 118
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E + AE ++RSK L+P+ EEA+ +E +GH FY+
Sbjct: 119 ENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYI 165
[146][TOP]
>UniRef100_Q9RVE7 Protein DR_1082 n=1 Tax=Deinococcus radiodurans RepID=UA82_DEIRA
Length = 191
Score = 55.5 bits (132), Expect = 2e-06
Identities = 42/167 (25%), Positives = 81/167 (48%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+++ + ++ + + VTL+ R + ++ +VEV + + G++R E+ ++
Sbjct: 22 EEKLSR-LDRYTDQITDARVTLTVRDV---RNNERRNRVEVQL-NVPGGIIRAEEHHADM 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YAAID D + +L+K K + + + GR P E + MD
Sbjct: 77 YAAIDKASDVLERQLRKFKTRYMKQRQ-EGRPEPLPGPAEAEVNAQGSGAAMD------- 128
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+++ +P ++R K L P++ E+A+ +EA+GH FYV
Sbjct: 129 --------DVSEFHP-EIVRQKRFELRPMSAEDAVVQMEALGHDFYV 166
[147][TOP]
>UniRef100_C5WIE9 Ribosome-associated factor Y n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WIE9_STRDG
Length = 182
Score = 55.1 bits (131), Expect = 3e-06
Identities = 45/167 (26%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E K+ K F +E+D ++ + + +K KVEVTI L + +R ED ++
Sbjct: 22 ESKLTKIEKYFVEE-QEIDARVNLK-----VYREKSSKVEVTI-PLGSVTLRAEDVSQDM 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV DKI +++K K K + +E + ++ T F+ E
Sbjct: 75 YGSIDLVVDKIERQIRKNKTKIAKK-----------------HREKVPTGQVFTTEFEAE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+++ V+R+K + L+P+ VEEA +E +GH F++
Sbjct: 118 --------QVDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFI 156
[148][TOP]
>UniRef100_C7ML59 Ribosomal subunit interface protein n=1 Tax=Cryptobacterium curtum
DSM 15641 RepID=C7ML59_CRYCD
Length = 188
Score = 55.1 bits (131), Expect = 3e-06
Identities = 35/127 (27%), Positives = 62/127 (48%)
Frame = +3
Query: 120 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 299
EVT+ T + ++RVE+ E ++YAAID+ K+ +L+K K + + R A +
Sbjct: 57 EVTM-TAKGHIIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAASIRS--- 112
Query: 300 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALE 479
K K+D A + + V+R K++ L+P+T EEA+ ++
Sbjct: 113 -------AKSAKLDLD------------ALMEELSDDEVVREKSIDLQPLTEEEALVEID 153
Query: 480 AVGHSFY 500
+GH F+
Sbjct: 154 LLGHDFF 160
[149][TOP]
>UniRef100_C5RGA6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulovorans 743B RepID=C5RGA6_CLOCL
Length = 180
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/134 (26%), Positives = 70/134 (52%)
Frame = +3
Query: 102 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG 281
+K Q +EVTI L+N ++R E+A ++YA+IDLV DK+ +++K K K
Sbjct: 45 RKLQVIEVTI-PLKNVILRGEEATESMYASIDLVIDKLEGQMRKNKTK----------LS 93
Query: 282 PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEE 461
++ D F + L + ++ ++E + ++++K ++P+ EE
Sbjct: 94 KQKYADSLRFYDALSKGELAATEVEEE---------------SKIVKTKRFAIKPMNAEE 138
Query: 462 AIDALEAVGHSFYV 503
A+ +E +GH+F+V
Sbjct: 139 AVLQMELLGHNFFV 152
[150][TOP]
>UniRef100_C2A7G2 Putative uncharacterized protein n=1 Tax=Thermomonospora curvata DSM
43183 RepID=C2A7G2_THECU
Length = 1073
Score = 55.1 bits (131), Expect = 3e-06
Identities = 53/160 (33%), Positives = 60/160 (37%), Gaps = 20/160 (12%)
Frame = -3
Query: 498 RTSAPQP-----PARQWPPPR*WARAPRSWSA*R---------WRGRCGSARRTGAAAAP 361
RTS P AR W PP WA P S R W R + + AP
Sbjct: 910 RTSPPPAWPTPRAARPWRPPAPWAAIPSSTRRPRPATDAAWPTWTRRSNTPPPSATTTAP 969
Query: 360 PCQTAECPS*PP*GTPGSPPHPRPP--WGRRGRARRRG*WPSP*SS----GAWRGSCRKP 199
P TA P P TP PP P P W R A R PSP +S AW G+
Sbjct: 970 PPTTANAPPCWPSCTP-PPPWPAVPAVWAMRPNAPAR---PSPPASATPCAAWTGT---T 1022
Query: 198 DRWQRTGCSPHPPRAPRRCATCKWSPLPSAPSCRGCRCRR 79
W T +P PP P A SP +C GC R+
Sbjct: 1023 PNWPPTCAAPSPPAPPAPTAPTSRSP----GACSGCGRRK 1058
[151][TOP]
>UniRef100_UPI0000E7FCDE PREDICTED: frizzled homolog 8 (Drosophila) n=1 Tax=Gallus gallus
RepID=UPI0000E7FCDE
Length = 275
Score = 54.7 bits (130), Expect = 3e-06
Identities = 53/171 (30%), Positives = 67/171 (39%), Gaps = 18/171 (10%)
Frame = +1
Query: 7 RRLLRPLPTSRTRSRRWTSRCPLAAATPAPTARRSRR*R*PFTRCATAWCAWRMRRTTCT 186
R RP S + RR R + A+P PT CA C R T
Sbjct: 49 RSRCRPAAASASGPRRAARRSCASTASPGPTG------------CAATGCRSRAAPTR-- 94
Query: 187 LPSIWFATRSAPSSRRSRRRPSA---AAPGPAA-----------PAPRRTWMRRTSRSTS 324
S W T +AP+S R RRRP + AAPGPAA P PR RR + +
Sbjct: 95 --SAW--TTTAPTSPRPRRRPPSPPSAAPGPAAPPGRPPRPPPRPRPRPRARRRPASRAA 150
Query: 325 RRSRWTLSCLTRRSSCSASSPS*TASTPPTSCAPRP----WCSSPSPWRRP 465
+R C T + C+ TA T P+SC+ W S P+ P
Sbjct: 151 SAARLWCRCPTSGTRCT------TAPTTPSSCSSTSCAWWWASPPASGSGP 195
[152][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 54.7 bits (130), Expect = 3e-06
Identities = 39/137 (28%), Positives = 68/137 (49%)
Frame = +3
Query: 93 THGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG 272
T+ K+EVTI L+N +R E+ ++LYA IDLV K+ +++K K + + G
Sbjct: 46 TYQNSATKIEVTI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRDNG 104
Query: 273 RAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPIT 452
P+ + E+ Q + E T E +++ ++RSK L+P+
Sbjct: 105 E--PEPFIAEQ--QTVVNEDVEATSESSNENEIE-------------IIRSKQFSLKPMD 147
Query: 453 VEEAIDALEAVGHSFYV 503
EEA+ ++ +GH FY+
Sbjct: 148 SEEAVLQMDLLGHDFYI 164
[153][TOP]
>UniRef100_UPI00019E91B6 SSU ribosomal protein S30P n=1 Tax=Nakamurella multipartita DSM
44233 RepID=UPI00019E91B6
Length = 210
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK+A++ + + VDV LS K Q+V++T+ + R VR E + N Y
Sbjct: 13 EKLARS-ERYDPKIIRVDVELSHE--TNRRQHKTCQRVQITVAS-RGPAVRAEASAENFY 68
Query: 186 AAIDLVCDKIRAKLQKIKEKAISR--GAWP---GRAGPKEDVDEEDFQE-------YLKE 329
AA+D K+ +L ++ ++ R G P A P+E + E F L++
Sbjct: 69 AALDAAVTKVETRLHRLHDRRRDRLHGRTPITAVAASPEEILGAEAFAPNGAVGTAVLED 128
Query: 330 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
D+ R AE P ++R K EPITV+EA+ +E VGH FY+
Sbjct: 129 EPTAAPAVDEISDDDRWGAEDGG--PGQIVRIKDHPAEPITVDEALLQMELVGHDFYL 184
[154][TOP]
>UniRef100_P94909 Putative uncharacterized protein (Fragment) n=1 Tax=Microbacterium
ammoniaphilum RepID=P94909_MICAM
Length = 529
Score = 54.3 bits (129), Expect = 4e-06
Identities = 59/172 (34%), Positives = 65/172 (37%), Gaps = 28/172 (16%)
Frame = +2
Query: 56 GRHAVRSR--RRHRHPRQEGAEGRGDHLHV------------------AQRRGARGGCGE 175
G H R RRHR R G GRG V +RR AR G
Sbjct: 125 GAHPARRGVLRRHRRHRARGERGRGPRQQVPRQHPRGRRDRAGRPGLHRRRRRARRRQGR 184
Query: 176 QPVRCHRSGLRQDPRQAPEDQGEGHQPRR------LARPRRPQGGRG*GGLPG--VPQGG 331
VR R DPR+ P D GH P R ARP R +GG+G G P P G
Sbjct: 185 PQVRHGDDQHRADPRR-PRDPRAGHHPLREGGQGQEARPLRARGGQGGPGGPAGRHPALG 243
Query: 332 QDGHSAV*QGGAAAAPVRRAEPHLPRQRHALQDRGARAHHRGGGH*RAGGCG 487
+ QG AA R HL QR + G RA R RAGG G
Sbjct: 244 DEDRPRARQGARAA---HREALHLRLQRRRGRADGCRAQGRARRARRAGGGG 292
[155][TOP]
>UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9BUA9_ENTFC
Length = 183
Score = 54.3 bits (129), Expect = 4e-06
Identities = 48/167 (28%), Positives = 83/167 (49%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K FS D + + + +K KVEVTI L V+R E+ +L
Sbjct: 22 EKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEVTI-PLPYLVLRAEETSPDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA+IDLV DK+ +++K K K R + ++ D T LF++E
Sbjct: 75 YASIDLVVDKLERQIRKFKTKI-------NRKSRETGMNTAD----------ATALFNEE 117
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++ + +EL +++R+K + L+P+ EEA+ + +GH+F++
Sbjct: 118 DENEND-SEL------DIVRTKRLSLKPMDSEEAVLQMNMLGHNFFI 157
[156][TOP]
>UniRef100_C8XEB0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nakamurella multipartita DSM 44233
RepID=C8XEB0_9ACTO
Length = 219
Score = 54.3 bits (129), Expect = 4e-06
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EK+A++ + + VDV LS K Q+V++T+ + R VR E + N Y
Sbjct: 22 EKLARS-ERYDPKIIRVDVELSHE--TNRRQHKTCQRVQITVAS-RGPAVRAEASAENFY 77
Query: 186 AAIDLVCDKIRAKLQKIKEKAISR--GAWP---GRAGPKEDVDEEDFQE-------YLKE 329
AA+D K+ +L ++ ++ R G P A P+E + E F L++
Sbjct: 78 AALDAAVTKVETRLHRLHDRRRDRLHGRTPITAVAASPEEILGAEAFAPNGAVGTAVLED 137
Query: 330 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
D+ R AE P ++R K EPITV+EA+ +E VGH FY+
Sbjct: 138 EPTAAPAVDEISDDDRWGAEDGG--PGQIVRIKDHPAEPITVDEALLQMELVGHDFYL 193
[157][TOP]
>UniRef100_UPI0001B4E6E7 oxidoreductase n=1 Tax=Streptomyces lividans TK24
RepID=UPI0001B4E6E7
Length = 400
Score = 53.9 bits (128), Expect = 6e-06
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Frame = +1
Query: 25 LPTSRTRSRRWTSRCPLAAATPAPTARRSRR*R*PFTRCATAWCAWRMRRTTCTLPSIWF 204
LP SR RS T P A P P A P+ RCA RR C+ S W
Sbjct: 210 LPHSRLRSSGGTPIAPSTPAAPTPQASHRWATSSPYRRCARPGTPGGSRRPRCS--SAWT 267
Query: 205 ATRSAPSSRRSRRRPSAAAPG-PAAPAPRRTWMRRTSRSTSRRS-RWTLSCLTRRSSCSA 378
AT PS +R R S + G PA+ P RTW + + S RW T + S+
Sbjct: 268 AT--VPSGPTARGRRSTRSSGAPASARPSRTWRPSACAAGAGTSPRWARRPRTSHACTSS 325
Query: 379 SSPS*TASTPPTSCA 423
++ + A PP S A
Sbjct: 326 ATATGPAPPPPPSSA 340
[158][TOP]
>UniRef100_Q1WSW6 Ribosome-associated factor Y n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSW6_LACS1
Length = 184
Score = 53.9 bits (128), Expect = 6e-06
Identities = 38/136 (27%), Positives = 68/136 (50%)
Frame = +3
Query: 96 HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGR 275
+ K KVEVTI L V+R E+ ++YA+IDLV DK+ +++K K K
Sbjct: 47 YSDKTAKVEVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTK---------- 95
Query: 276 AGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITV 455
V+ + ++ K + +KEE ++F ++R+K + L+P+
Sbjct: 96 ------VNRKSREKGFKNFEFAPVADEKEEVEDKKF---------EIVRTKRLSLKPMDS 140
Query: 456 EEAIDALEAVGHSFYV 503
EEA+ ++ +GH F++
Sbjct: 141 EEAVLQMDMLGHDFFI 156
[159][TOP]
>UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Pediococcus pentosaceus ATCC 25745
RepID=Q03GZ9_PEDPA
Length = 184
Score = 53.9 bits (128), Expect = 6e-06
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +3
Query: 105 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG- 281
K KVEVTI L V+R E+ +LYA++DLV DK+ +L+K K K + G G
Sbjct: 50 KTAKVEVTI-PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRETGYKGV 108
Query: 282 --PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITV 455
P D+ E E+ QF +++R+K V L+P+
Sbjct: 109 EIPSGDIVEN-------------------EEEASQF---------DIVRTKQVSLKPMGS 140
Query: 456 EEAIDALEAVGHSFYV 503
EEAI ++ +GH+F++
Sbjct: 141 EEAILQMDMLGHNFFI 156
[160][TOP]
>UniRef100_Q030Z0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Lactococcus lactis subsp. cremoris SK11
RepID=Q030Z0_LACLS
Length = 185
Score = 53.9 bits (128), Expect = 6e-06
Identities = 38/134 (28%), Positives = 68/134 (50%)
Frame = +3
Query: 102 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG 281
+K KVEVT+ +N +R ED ++Y++ID V +K+ +++K K + + P A
Sbjct: 49 EKRAKVEVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAV 104
Query: 282 PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEE 461
P V ++F +DT E+ + +++R+K V L+P+ EE
Sbjct: 105 PTGQVFGDEF------APLDTTDEVAEDHV-------------DIVRTKHVALKPMDAEE 145
Query: 462 AIDALEAVGHSFYV 503
A+ ++ +GH FYV
Sbjct: 146 AVLQMDMLGHDFYV 159
[161][TOP]
>UniRef100_A2RIX0 Putative Sigma 54 modulation protein n=2 Tax=Lactococcus lactis
RepID=A2RIX0_LACLM
Length = 185
Score = 53.9 bits (128), Expect = 6e-06
Identities = 38/134 (28%), Positives = 68/134 (50%)
Frame = +3
Query: 102 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG 281
+K KVEVT+ +N +R ED ++Y++ID V +K+ +++K K + + P A
Sbjct: 49 EKRAKVEVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAV 104
Query: 282 PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEE 461
P V ++F +DT E+ + +++R+K V L+P+ EE
Sbjct: 105 PTGQVFGDEF------APLDTTDEVAEDHV-------------DIVRTKHVALKPMDAEE 145
Query: 462 AIDALEAVGHSFYV 503
A+ ++ +GH FYV
Sbjct: 146 AVLQMDMLGHDFYV 159
[162][TOP]
>UniRef100_C6J2M0 Ribosomal subunit interface protein n=1 Tax=Paenibacillus sp. oral
taxon 786 str. D14 RepID=C6J2M0_9BACL
Length = 183
Score = 53.9 bits (128), Expect = 6e-06
Identities = 45/129 (34%), Positives = 67/129 (51%)
Frame = +3
Query: 117 VEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 296
VEVTI L V+R ED +++YA+ID V DK+ +++K K K I+R + G K +
Sbjct: 52 VEVTI-PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTK-INRKL--RQKGVKNSL 107
Query: 297 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDAL 476
ED L + EE+L+ V+R+K L+P+ VEEAI +
Sbjct: 108 FVED------ATTGSVALDEGEEELE-------------VVRTKRFTLKPMDVEEAILQM 148
Query: 477 EAVGHSFYV 503
VGH+F+V
Sbjct: 149 NMVGHNFFV 157
[163][TOP]
>UniRef100_C2EGB2 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
salivarius ATCC 11741 RepID=C2EGB2_9LACO
Length = 184
Score = 53.9 bits (128), Expect = 6e-06
Identities = 38/136 (27%), Positives = 68/136 (50%)
Frame = +3
Query: 96 HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGR 275
+ K KVEVTI L V+R E+ ++YA+IDLV DK+ +++K K K
Sbjct: 47 YSDKTAKVEVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTK---------- 95
Query: 276 AGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITV 455
V+ + ++ K + +KEE ++F ++R+K + L+P+
Sbjct: 96 ------VNRKSREKGFKNFEFAPVADEKEEVEDKKF---------EIVRTKRLSLKPMDS 140
Query: 456 EEAIDALEAVGHSFYV 503
EEA+ ++ +GH F++
Sbjct: 141 EEAVLQMDMLGHDFFI 156
[164][TOP]
>UniRef100_A8SVF0 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SVF0_9FIRM
Length = 175
Score = 53.9 bits (128), Expect = 6e-06
Identities = 35/134 (26%), Positives = 65/134 (48%)
Frame = +3
Query: 102 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG 281
K QK+EVTI ++ ++R E +++Y +IDLV + I ++ K ++K I
Sbjct: 45 KDRQKIEVTI-PMKGHIIRAEQVSDDMYVSIDLVVEVIERQVTKHRKKLI---------- 93
Query: 282 PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEE 461
D+E YL E +D + D ++ ++R+K ++P+ E+
Sbjct: 94 -----DKEQNVAYLNEAFVDEDIEDDDD--------------IKIVRTKKFAVKPMYPED 134
Query: 462 AIDALEAVGHSFYV 503
A ++ +GH+FYV
Sbjct: 135 ACIQMDLLGHNFYV 148
[165][TOP]
>UniRef100_A8RDK2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM
3991 RepID=A8RDK2_9FIRM
Length = 177
Score = 53.9 bits (128), Expect = 6e-06
Identities = 39/132 (29%), Positives = 67/132 (50%)
Frame = +3
Query: 108 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK 287
+QK+EVTI T + V+R E ++LYAAIDL DK+ ++++ K + +
Sbjct: 49 KQKIEVTIPT-KYAVLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAYAFI 107
Query: 288 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAI 467
E++D ED E D +E ++R+KTV ++ + ++EAI
Sbjct: 108 EEMDFEDSYE------------DNDE----------------LVRTKTVTVDTMELDEAI 139
Query: 468 DALEAVGHSFYV 503
+E +GHSF++
Sbjct: 140 MRMEMLGHSFFI 151
[166][TOP]
>UniRef100_Q49VV1 Uncharacterized protein SSP1964 n=1 Tax=Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305
RepID=Y1964_STAS1
Length = 190
Score = 53.9 bits (128), Expect = 6e-06
Identities = 42/167 (25%), Positives = 77/167 (46%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
EEK+ K F+ DV + T+ K+EVTI L+ +R E+ ++L
Sbjct: 22 EEKIGKLERYFN------DVPNATAHVKVKTYQNSATKIEVTI-PLKKVTLRAEERNDDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
YA IDL+ +K+ +++K K + R G E++ L E K ++ + E
Sbjct: 75 YAGIDLINNKLERQVRKYKTRVNRRNRNRG---------EQEAFASLPEEKEAVEIQNDE 125
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+ + ++R+K L+P+ EEA+ ++ +GH F++
Sbjct: 126 NEADNEI---------EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFI 163
[167][TOP]
>UniRef100_Q8ENI5 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
RepID=Q8ENI5_OCEIH
Length = 185
Score = 53.5 bits (127), Expect = 7e-06
Identities = 44/132 (33%), Positives = 70/132 (53%)
Frame = +3
Query: 108 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK 287
EQ++EVTI + N ++R E +LYAA+DLV DK+ +++K K K I+R + PK
Sbjct: 49 EQRIEVTI-PMTNLLLRGEVQHIDLYAAVDLVVDKLERQIRKHKTK-INR-KFRQNGSPK 105
Query: 288 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAI 467
E + + L E + D E QL+ ++R+K L+P+ EEAI
Sbjct: 106 HAFAEMEKEARLAEDEED------ENQLE-------------IVRTKRFNLKPMDSEEAI 146
Query: 468 DALEAVGHSFYV 503
++ +GH F+V
Sbjct: 147 LQMDMLGHEFFV 158
[168][TOP]
>UniRef100_B8I5T8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulolyticum H10 RepID=B8I5T8_CLOCE
Length = 176
Score = 53.5 bits (127), Expect = 7e-06
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Frame = +3
Query: 9 KVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGV-VRVEDAENNLY 185
K K + F ++ EV VTLS + + Q VE+TI NGV +R ED ++Y
Sbjct: 22 KKVKKLEKFFNSDTEVHVTLSVQ--------RVSQIVEITIPF--NGVTLRAEDQNEDMY 71
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
+ID V D I +++K K + R + + DF K+D F +
Sbjct: 72 TSIDRVIDLIERQIRKNKTRLERR------------LHDHDF-------KVDNSKFTYDV 112
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
Q + +F V+RSK ++P+ VEEAI + +GH F++
Sbjct: 113 QEETEF---------KVVRSKRFAVKPMDVEEAILQMNLLGHEFFM 149
[169][TOP]
>UniRef100_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Halothermothrix orenii H 168 RepID=B8CYM6_HALOH
Length = 184
Score = 53.5 bits (127), Expect = 7e-06
Identities = 47/166 (28%), Positives = 79/166 (47%)
Frame = +3
Query: 6 EKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
EKV+K F +E +++ G VEVT Y L ++R E+ ++Y
Sbjct: 22 EKVSKLGKYFDGEPQEAHISMEVEKG--------RHIVEVTAY-LNGLILRGEEESQDMY 72
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEE 365
A+ID V +K+ ++ K K K I+R E QE+ KE K + +EE
Sbjct: 73 ASIDGVLEKLERQVHKYKTK-INRKI------------RERKQEFKKEYKEER----REE 115
Query: 366 QLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
L + E + ++R+K ++P++VEEA ++ +GH F+V
Sbjct: 116 ILNSEEDE----FKPRIVRTKKFAIKPMSVEEAAMQMDLLGHDFFV 157
[170][TOP]
>UniRef100_A9AY42 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Herpetosiphon aurantiacus ATCC 23779
RepID=A9AY42_HERA2
Length = 186
Score = 53.5 bits (127), Expect = 7e-06
Identities = 35/129 (27%), Positives = 62/129 (48%)
Frame = +3
Query: 117 VEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 296
V+ T+ ++R E+ + LYAA++ V D ++ ++++ KEK RG AG
Sbjct: 55 VQATLLADHGIILRAEERDRELYAAVEAVHDNLQRQIRRFKEKHYRRGKLRRTAGE---- 110
Query: 297 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDAL 476
+ + D E+ +RQ ++R+K V L P+ +EAI+ +
Sbjct: 111 --------IIAAPLPALPEDAEQAEERQ-----------IIRAKEVTLRPMFSDEAIEQM 151
Query: 477 EAVGHSFYV 503
E +GHSF+V
Sbjct: 152 ELLGHSFFV 160
[171][TOP]
>UniRef100_C0FTS3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans
DSM 16841 RepID=C0FTS3_9FIRM
Length = 176
Score = 53.5 bits (127), Expect = 7e-06
Identities = 45/167 (26%), Positives = 79/167 (47%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ EV+VTLS K+ QKVEVTI ++ +R E +++
Sbjct: 21 EDKLNKLEKYFTPDT-EVNVTLSVE--------KERQKVEVTI-PMKGSYIRSEQVSSDM 70
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV + I +L+K + K +++ +++ K+ +D + D E
Sbjct: 71 YVSIDLVEEVIERQLKKYRTKLVTK--------------QQNAAAVFKQDFLDEKSEDDE 116
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E ++R+K ++P+ E+A +E +GH FYV
Sbjct: 117 E--------------IKIIRTKKFDMKPMYPEDACVEMELLGHDFYV 149
[172][TOP]
>UniRef100_C0BAM2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC
27758 RepID=C0BAM2_9FIRM
Length = 189
Score = 53.5 bits (127), Expect = 7e-06
Identities = 45/167 (26%), Positives = 81/167 (48%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+K+ K F+ ++ VTLS K+ QK+EVTI ++ ++R E +++
Sbjct: 32 EQKLGKLEKYFTPET-DIIVTLSVE--------KERQKIEVTI-PVKGNIIRSEQESSDM 81
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKE 362
Y +IDLV + I +L+K K K I+ K+ + QE+++ DT + +
Sbjct: 82 YVSIDLVEEIIERQLRKYKTKLIA----------KQQGGHDFRQEFIES---DTSAAESD 128
Query: 363 EQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
E ++R+K ++P+ E+A +E +GH+FYV
Sbjct: 129 E--------------IEIVRTKRFGIKPMFPEDACIQMELLGHNFYV 161
[173][TOP]
>UniRef100_B7A6F1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermus
aquaticus Y51MC23 RepID=B7A6F1_THEAQ
Length = 186
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/148 (28%), Positives = 71/148 (47%)
Frame = +3
Query: 60 VTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK 239
V LS G H +K K EV + L G++RVE+ + +LYAAID + D++ +L++ K
Sbjct: 40 VVLSLAGSP---HVEKRAKAEVQL-DLPGGLLRVEEEDQDLYAAIDRMVDRLEIQLKRYK 95
Query: 240 EKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVM 419
E+ + P +V + M+ +EE+ R ++
Sbjct: 96 ERRFVGRRHTYQGPPPPEVRD-----------MEALRKPEEEEGPR------------IV 132
Query: 420 RSKTVVLEPITVEEAIDALEAVGHSFYV 503
R K ++P+ EEA+ +EA+GH F+V
Sbjct: 133 RVKRFEMKPMDPEEAVFQMEALGHDFFV 160
[174][TOP]
>UniRef100_A4ECY7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4ECY7_9ACTN
Length = 194
Score = 53.5 bits (127), Expect = 7e-06
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+EK+ +A+ F VDV L + + VEVT R V+RV + ++
Sbjct: 21 DEKIGEALKVFDIEPMTVDVVLRYEKNPSNPN---PAIVEVTARA-RGSVIRVAEHGADM 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISR---GAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
YAAIDL DK+ +L+K K K + GA P E V++ D L
Sbjct: 77 YAAIDLSADKVTRQLRKFKTKVVDNRQGGASAADVAPVERVED----------LADLLLP 126
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++++ L ++R K + + P+T E+A+ + +GH FYV
Sbjct: 127 EEDDDL--------------LVREKVIDVTPMTEEQALVQTDLLGHDFYV 162
[175][TOP]
>UniRef100_Q9CHS8 Putative uncharacterized protein ygdA n=1 Tax=Lactococcus lactis
subsp. lactis RepID=Q9CHS8_LACLA
Length = 185
Score = 53.1 bits (126), Expect = 1e-05
Identities = 35/136 (25%), Positives = 67/136 (49%)
Frame = +3
Query: 96 HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGR 275
+ +K KVEVT+ +N +R ED ++Y++ID V +K+ +++K K + + P
Sbjct: 47 YSEKRAKVEVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRN 102
Query: 276 AGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITV 455
A P ++F +K +++ + ++R+K V L+P+
Sbjct: 103 AVPTGQAFGDEFAP-----------LEKADEVAEDHVD--------IVRTKHVALKPMDA 143
Query: 456 EEAIDALEAVGHSFYV 503
EEA+ ++ +GH FYV
Sbjct: 144 EEAVLQMDMLGHDFYV 159
[176][TOP]
>UniRef100_Q03SQ1 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Lactobacillus brevis ATCC 367 RepID=Q03SQ1_LACBA
Length = 186
Score = 53.1 bits (126), Expect = 1e-05
Identities = 37/133 (27%), Positives = 66/133 (49%)
Frame = +3
Query: 105 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 284
K KVEVTI L +R E+ +LYA++DLV DK+ +++K K K
Sbjct: 50 KTAKVEVTI-PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTK------------- 95
Query: 285 KEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEA 464
V+ + ++ K + T+ + ++ + E V+R+K V L+P+ EEA
Sbjct: 96 ---VNRKSREKGYKNLDFSTETSESDKPAEGSELE--------VVRTKRVSLKPMDTEEA 144
Query: 465 IDALEAVGHSFYV 503
+ ++ +GH F++
Sbjct: 145 VLQMDMLGHDFFI 157
[177][TOP]
>UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus faecium RepID=C9BP47_ENTFC
Length = 183
Score = 53.1 bits (126), Expect = 1e-05
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K FS D + + + +K KVEVTI L V+R E+ +L
Sbjct: 22 EKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEVTI-PLPYLVLRAEETSPDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDT----QL 350
YA+IDLV DK+ +++K K K I+R + +E M+T L
Sbjct: 75 YASIDLVVDKLERQIRKFKTK-INRKS--------------------RETGMNTADAAAL 113
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
F++E++ + +EL +++R+K + L+P+ EEA+ + +GH+F++
Sbjct: 114 FNEEDENEND-SEL------DIVRTKRLSLKPMDSEEAVLQMNMLGHNFFI 157
[178][TOP]
>UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC
Length = 183
Score = 53.1 bits (126), Expect = 1e-05
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K FS D + + + +K KVEVTI L V+R E+ +L
Sbjct: 22 EKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEVTI-PLPYLVLRAEETSPDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDT----QL 350
YA+IDLV DK+ +++K K K I+R + +E M+T L
Sbjct: 75 YASIDLVVDKLERQIRKFKTK-INRKS--------------------RETGMNTANAAAL 113
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
F++E++ + +EL +++R+K + L+P+ EEA+ + +GH+F++
Sbjct: 114 FNEEDENEND-SEL------DIVRTKRLSLKPMDSEEAVLQMNMLGHNFFI 157
[179][TOP]
>UniRef100_C4FCG3 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
DSM 13280 RepID=C4FCG3_9ACTN
Length = 194
Score = 53.1 bits (126), Expect = 1e-05
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+EK+ +A+ F DV L + + VEVT+ R V+RV + ++
Sbjct: 21 DEKIGEALKVFDIEPMTADVVLRYEKNPSNPN---PAIVEVTVRA-RGSVIRVAEHGADM 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAIS---RGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
YAAIDL +K+ +L+K K + + +G P E V D + L D QL
Sbjct: 77 YAAIDLAAEKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPV--ADLADLLLPEDEDDQL- 133
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+R K V L P+T EEA+ + +GH FYV
Sbjct: 134 ---------------------VRVKEVELTPMTDEEALVQTDLIGHDFYV 162
[180][TOP]
>UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus
faecium RepID=C2HCP0_ENTFC
Length = 183
Score = 53.1 bits (126), Expect = 1e-05
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
E+KV K FS D + + + +K KVEVTI L V+R E+ +L
Sbjct: 22 EKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEVTI-PLPYLVLRAEETSPDL 74
Query: 183 YAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ----L 350
YA+IDLV DK+ +++K K K I+R + +E M+T L
Sbjct: 75 YASIDLVVDKLERQIRKFKTK-INRKS--------------------RETGMNTADAAVL 113
Query: 351 FDKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
F+ EE+ + +EL +++R+K + L+P+ EEA+ + +GH+F++
Sbjct: 114 FNGEEENEND-SEL------DIVRTKRLSLKPMDSEEAVLQMNMLGHNFFI 157
[181][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 53.1 bits (126), Expect = 1e-05
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%)
Frame = +3
Query: 3 EEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNL 182
+EK+ +A+ F DV L + + VEVT+ R V+RV + ++
Sbjct: 21 DEKIGEALKVFDIEPMTADVVLRYEKNPSNPN---PAIVEVTVRA-RGSVIRVAEHGADM 76
Query: 183 YAAIDLVCDKIRAKLQKIKEKAI---SRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLF 353
YAAIDL DK+ +L+K K + + +G P E V D + L + D QL
Sbjct: 77 YAAIDLAADKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPV--ADLADLLIPEEEDDQL- 133
Query: 354 DKEEQLQRQFAELNRIYPANVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
+R K + L P+T E+A+ + +GH FYV
Sbjct: 134 ---------------------VRVKEIELTPMTEEQALVQTDLLGHDFYV 162
[182][TOP]
>UniRef100_B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase
(Fragment) n=1 Tax=Streptomyces sp. SPB74
RepID=B5GAS7_9ACTO
Length = 445
Score = 53.1 bits (126), Expect = 1e-05
Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Frame = +1
Query: 7 RRLLRPLPTSRTRSRRWTSRCPLA-----------AATPAPTARRSRR*R*PFTRCATAW 153
RR P +SR SR + CP AT A T S R ++A
Sbjct: 179 RRRTSPRDSSRRCSRAPSRTCPAPRSRCVTGPPAPGATSAATGTTSYRCPAAVPAPSSAT 238
Query: 154 CAWRMRRTTCTLPSIWFATRSAPSSRRSRRRPSAAAPGPAAPAPRRTWMRRTSRSTSRRS 333
C R TT T P W ++ +SR + RP A P P+ PAPR +W T ++ S
Sbjct: 239 C----RATTRTPPPSW----ASSASRCAPTRPRATRPPPSWPAPRSSWTSWTPTASRPAS 290
Query: 334 RWTLSCLTRRSSCSASSPS*TASTPPTSCAPRPWCSSPSPWR 459
+ SS SA S +S PPT AP C SP+ R
Sbjct: 291 TRRPTSAPESSSSSAPGTSTPSSWPPT--APPAACPSPAGCR 330
[183][TOP]
>UniRef100_B0MGZ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MGZ9_9FIRM
Length = 176
Score = 53.1 bits (126), Expect = 1e-05
Identities = 40/151 (26%), Positives = 75/151 (49%)
Frame = +3
Query: 51 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 230
++ VTLS + K+ QK+EVTI ++ ++R E ++Y +IDLV D + +++
Sbjct: 36 DIIVTLSVQ--------KERQKIEVTI-PMKGHIIRAEQDSADMYVSIDLVIDILERQIR 86
Query: 231 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPA 410
+ K + +S+ + G AG K++ DK+E +
Sbjct: 87 RYKTRLMSK-KYEG-AGLKQE------------------FIDKDEDVDED--------EI 118
Query: 411 NVMRSKTVVLEPITVEEAIDALEAVGHSFYV 503
++RSK ++P+ VEEA ++ +GH+F+V
Sbjct: 119 RIIRSKKFAIKPMDVEEACIQMDLLGHNFFV 149
[184][TOP]
>UniRef100_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4SAX9_OSTLU
Length = 132
Score = 53.1 bits (126), Expect = 1e-05
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 KVAKAVANFS-HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLY 185
K+ KA ++ ++EVDV SARGG+ + G E K EVT+ R + + NLY
Sbjct: 21 KIGKACSHVDPREIREVDVRCSARGGED-SRGGHEHKTEVTVLMTRGTTLHADGTGENLY 79
Query: 186 AAIDLVCDKIRAKLQKIKEKAISRGA 263
A ID D + ++K KEK +G+
Sbjct: 80 ATIDSCADIVTRAIRKHKEKHSGKGS 105