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[1][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 363 bits (932), Expect = 4e-99
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW
Sbjct: 864 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 923
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT
Sbjct: 924 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 983
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 536
KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH
Sbjct: 984 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 1041
[2][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
50319 RepID=Q8MX26_9EUKA
Length = 1014
Score = 149 bits (377), Expect = 9e-35
Identities = 75/176 (42%), Positives = 116/176 (65%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
++Y TVRNS GD++QF YGEDGMD V IE Q + LK D A+ K Y++D +R D+
Sbjct: 784 IKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLKTYQLDVSRPEQLDF 843
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
+ AE E L P A+ E+ Q+++D ++LR+++ G++ V++P+NL RLIWNAQ
Sbjct: 844 MDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQK 903
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+F+ R + ++ ++VI V+ L ERL+VV G+D LS++AQ NAT +F ++R
Sbjct: 904 RFHV--DRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTNATTLFKIMLR 957
[3][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
aggregatum RepID=Q2PYS6_9FUNG
Length = 1016
Score = 141 bits (355), Expect = 3e-32
Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173
VRY GT+R+S G V+QF YGEDGMD ++E Q E L AK +KAYR+D T +
Sbjct: 791 VRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMSDAKFEKAYRVDLTGGQYGLK 850
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P L E L +D + + E Q+++D LR + +G +P+NL RLIWN
Sbjct: 851 PGVLDFRTQENLLSDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWN 910
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ +F P +P T L + V +L ++LVVV G+D LSVEAQ+NAT++F LVR
Sbjct: 911 AQNQFEVGPRKP--TDLHPLHITESVEQLLDKLVVVRGNDPLSVEAQKNATLLFQILVR 967
[4][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
RepID=Q1ACV3_ACEPM
Length = 240
Score = 140 bits (352), Expect = 8e-32
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q+ + LK + +K +R + +D P+
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQILDSLKIKKSDFNKTFRFEMDQDNWNPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T + E+ +++ D L E+ T+GD +P+NL RLIWNAQ
Sbjct: 80 YMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P RP + + EV+ + +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDPRRP--SDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILLR 194
[5][TOP]
>UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata
RepID=Q71ET5_NYMOD
Length = 1013
Score = 139 bits (351), Expect = 1e-31
Identities = 76/177 (42%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK ++ + + P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFKFEFDDENWDPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+L + E L+T ++ E+ +++ D R L E+ T GD +P+NL RLIWNAQ
Sbjct: 850 YLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDAMSMEAQKNATLFFNILLR 964
[6][TOP]
>UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale
RepID=B7SNX2_PAPOR
Length = 1010
Score = 139 bits (350), Expect = 1e-31
Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + DK YR + D P+
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPN 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ ++ E L+ E+ ++ +D L E+ T GD +P+NL RLIWNAQ
Sbjct: 847 YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 907 KTFKVDPRRP--SDMHPMEIVEAIDKLQERLKVVPGDDSMSMEAQKNATLFFNILLR 961
[7][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 138 bits (348), Expect = 2e-31
Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+
Sbjct: 869 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 989 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043
[8][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 138 bits (348), Expect = 2e-31
Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+
Sbjct: 816 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 875
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 936 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 990
[9][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 138 bits (348), Expect = 2e-31
Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+
Sbjct: 869 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 989 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043
[10][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 138 bits (348), Expect = 2e-31
Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ ++ YR + R D PD
Sbjct: 871 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYRFEIDRDDWAPD 930
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++SAE E ++T + E+++++ D R + E+ G+ +P+NL RLIWNAQ
Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + + E++ V L ERL VV G+D +S+EAQRNAT+ F L+R
Sbjct: 991 KIFKVDLRKS--SDMHPMEIVEAVENLQERLRVVPGNDQISMEAQRNATLFFGCLLR 1045
[11][TOP]
>UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri
RepID=B7SNW8_DRIWI
Length = 1010
Score = 137 bits (345), Expect = 5e-31
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ D +R + D P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDNDNWNPS 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 847 YMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP +G+ E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 907 KTFKVDLRRP--SGMHPMEIVEAVDKLQERLKVVPGDDPISMEAQKNATLFFNILLR 961
[12][TOP]
>UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
RepID=Q1ACS7_9MAGN
Length = 240
Score = 136 bits (343), Expect = 8e-31
Identities = 75/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + +K ++ + + P+
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFKYEIDDPNWNPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ +E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ
Sbjct: 80 YMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G+D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGADSLSIEAQKNATLLFNILLR 194
[13][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
tomentosa RepID=Q1ACT8_9MAGN
Length = 240
Score = 136 bits (342), Expect = 1e-30
Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + +K +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFRYEIDDPNWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEAQKNATLLFNILLR 194
[14][TOP]
>UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis
RepID=B7SNW5_ASPOF
Length = 1009
Score = 136 bits (342), Expect = 1e-30
Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + P
Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFNNVYRYEIDDNQWDPS 845
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T P E+ +++ D L ++ T GD +P+NL RLIWNAQ
Sbjct: 846 YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P RP + + E++ V +L E+L VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 906 KTFKVDPRRP--SDMHPMEIVEAVDKLQEKLRVVPGDDFLSMEAQKNATLLFNILLR 960
[15][TOP]
>UniRef100_A1YIB8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gigaspora gigantea
RepID=A1YIB8_9GLOM
Length = 1039
Score = 135 bits (341), Expect = 1e-30
Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 14/190 (7%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRNS GD+VQF YGEDGMDA +E Q F+ L + A+ D Y I+ D
Sbjct: 801 VKYDGTVRNSLGDIVQFCYGEDGMDACFVEPQTFDTLPMNNAEFDNKYLIELKDDE---- 856
Query: 183 LSAEEYEALRTDPA--------------VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVN 320
+E EA + D + + + +E Q+K D +L+ ++ TNGD K
Sbjct: 857 -KNKEKEAGQQDDTDLVQPKKPKTQQEIIREKIVEEYVQLKRDREMLQRDIFTNGDNKWP 915
Query: 321 IPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRN 500
+P+N+ RLI NAQ KFN +P R T LQ +VI V E+ RLVVV G+D +S EAQ N
Sbjct: 916 LPVNIKRLIKNAQQKFNIRPSRWTTTDLQYIDVINSVEEVMSRLVVVKGNDQISHEAQTN 975
Query: 501 ATIMFHSLVR 530
AT +F L+R
Sbjct: 976 ATTLFKILLR 985
[16][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7R1R2_VITVI
Length = 429
Score = 135 bits (340), Expect = 2e-30
Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + D+A+R + + P+
Sbjct: 125 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 184
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ + GD ++P+NL RLIWNAQ
Sbjct: 185 YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 244
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + + E++ V +L ERL VV G D +S+EAQ+NAT++F+ L+R
Sbjct: 245 KTFKIDLRRP--SDMHLMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 299
[17][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 135 bits (339), Expect = 2e-30
Identities = 73/177 (41%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
++Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK + D+ +R + + P+
Sbjct: 60 LKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPN 119
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ +NGD + +P+NL RLIWNAQ
Sbjct: 120 YMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQ 179
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 180 KTFKVDFRRP--SDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLR 234
[18][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
RepID=Q71ET4_AMBTC
Length = 1013
Score = 134 bits (338), Expect = 3e-30
Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ + Y+ + ++ P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KMFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[19][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
macrophyllus RepID=Q2TUN7_9CONI
Length = 1013
Score = 134 bits (338), Expect = 3e-30
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + ++ P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEVDQENWNPI 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P +P + + E++ + L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDPRKP--SDMHPMEIVEAIDRLQERLKVVPGDDLISIEAQKNATLFFNILLR 964
[20][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
RepID=Q2TUN8_TAXCA
Length = 1013
Score = 134 bits (337), Expect = 4e-30
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + ++ P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYRYEIDQENWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T + E+ +++ D R L E+ T GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P + + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[21][TOP]
>UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus
sempervirens RepID=Q1ACU8_BUXSE
Length = 240
Score = 134 bits (337), Expect = 4e-30
Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A DK +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEDQKLDSLKMKKADFDKVFRYEIDDENWSPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194
[22][TOP]
>UniRef100_B7SNX5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Saruma henryi
RepID=B7SNX5_SARHE
Length = 1009
Score = 134 bits (337), Expect = 4e-30
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ DK +R + + P
Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFRYEFDDANWNPS 845
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 846 YMLPEHVEDLKTIREFRSVFDAEVQKLEADRYQLGTEITTTGDNSWPMPVNLKRLIWNAQ 905
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 906 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDLMSMEAQKNATLFFNILLR 960
[23][TOP]
>UniRef100_A1YIC1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Blastocladiella
emersonii RepID=A1YIC1_BLAEM
Length = 1005
Score = 134 bits (337), Expect = 4e-30
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRN+QG+++QF YGEDGMD R+E Q+ E L+ AK D+ YRID T
Sbjct: 775 VKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFDRRYRIDVTDVGGSSG 834
Query: 183 L--SAEEYEALR--TDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
L E+ R V++ + E Q+ D R L +++ GD + +P NL R+IW
Sbjct: 835 LRPGTVEFGIQREMQSAEVQELLNAEYEQLLRDRRDL-QQIFPRGDARWPLPCNLNRIIW 893
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F +P + L V+ KVR LC+ LVV+ G+D +SVEAQRNAT++ +LVR
Sbjct: 894 NAQNLFKIDKSKP--SNLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATLLMQALVR 951
[24][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
RepID=Q71ET8_WELMI
Length = 1013
Score = 133 bits (335), Expect = 7e-30
Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV QFLYGEDGMDAV IE Q + LK + D Y+ + ++ P
Sbjct: 790 VKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFDDVYKYELDQENWNPG 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ ++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P + + + E+I + +L ERL VV G+D LS+EAQ+NAT+ F+ L+R
Sbjct: 910 KLFKIDPRKA--SDMHPMEIIDAIDKLQERLKVVPGNDPLSIEAQKNATLFFNILLR 964
[25][TOP]
>UniRef100_Q1L5Z5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhododendron
macrophyllum RepID=Q1L5Z5_RHOMC
Length = 589
Score = 133 bits (335), Expect = 7e-30
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P
Sbjct: 377 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEFDKKFRYEIDDGNWNPS 436
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ AE E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 437 YMLAEHVEDLKTIREFRNVFDAEVQKLEADRLQLGTEIATTGDNNWPMPVNLGRLIWNAQ 496
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT F+ L+R
Sbjct: 497 KTFKIDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSMEAQKNATTFFNILLR 551
[26][TOP]
>UniRef100_Q1ACV0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
beckleri RepID=Q1ACV0_9MAGN
Length = 240
Score = 133 bits (335), Expect = 7e-30
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEFQKLDSLKMKKSDFBRVFRYEIGDENWNPT 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T P E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 FMLPEHVEGLKTIPEFGNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194
[27][TOP]
>UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus
tuberosa RepID=Q1ACU7_9MAGN
Length = 240
Score = 133 bits (335), Expect = 7e-30
Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +SVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISVEAQKNATLFFNILLR 194
[28][TOP]
>UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo
nucifera RepID=Q1ACT3_NELNU
Length = 240
Score = 133 bits (335), Expect = 7e-30
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[29][TOP]
>UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
RepID=Q1ACS8_9MAGN
Length = 240
Score = 133 bits (334), Expect = 9e-30
Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + K ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFKKVFKYEIDDPNWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L E+L VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQEKLKVVPGEDSLSIEAQKNATLLFNILLR 194
[30][TOP]
>UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
RepID=Q71ET7_MAIZE
Length = 1009
Score = 132 bits (333), Expect = 1e-29
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+
Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPN 845
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 846 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 906 KTFKIDFRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 960
[31][TOP]
>UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera
chilensis RepID=Q1ACU4_GUNCH
Length = 240
Score = 132 bits (333), Expect = 1e-29
Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ DK ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194
[32][TOP]
>UniRef100_Q1ACT5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus
orientalis RepID=Q1ACT5_PLAOI
Length = 240
Score = 132 bits (333), Expect = 1e-29
Identities = 77/177 (43%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V L ERL VV G D LS+EAQ+NAT+ F+ L R
Sbjct: 140 KTFXVDLRRP--SDMHPMEIVEAVDXLQERLXVVPGDDFLSMEAQKNATLFFNILXR 194
[33][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
RepID=O04144_9VIRI
Length = 613
Score = 132 bits (333), Expect = 1e-29
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q +K + + D YR + + D PD
Sbjct: 378 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKSTFDATYRYEIDQEDWSPD 437
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ + + + Q M E+ Q+++D R L E+ GD +P+N+ RLIWNAQ
Sbjct: 438 YMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQ 497
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + +V+ + +L ERL VV+G D +S EAQ+NAT+ F+ L+R
Sbjct: 498 KIFKIDLRKP--SDMNPMDVVDGMDKLQERLKVVVGDDHISREAQKNATLFFNCLLR 552
[34][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 132 bits (333), Expect = 1e-29
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+
Sbjct: 539 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 598
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 599 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 658
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 659 KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 713
[35][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BAW1_ORYSI
Length = 1449
Score = 132 bits (333), Expect = 1e-29
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+
Sbjct: 838 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 897
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 898 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 957
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 958 KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 1012
[36][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
RepID=B7SNX4_PEA
Length = 1010
Score = 132 bits (333), Expect = 1e-29
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK D+A+R + + P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPT 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ ++ D L E+ T GD + +P+NL RLIWNAQ
Sbjct: 847 YMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 907 KTFKVDFRRP--SDMHPMEIVEAIDKLQERLRVVPGDDLLSQEAQKNATLLFNILLR 961
[37][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
RepID=Q71ET3_PSINU
Length = 1013
Score = 132 bits (332), Expect = 2e-29
Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV++FLYGEDGMDAV IE Q + +K + D+ Y + + + PD
Sbjct: 790 VKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFEIDSENWNPD 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ AE E L+T E+ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + E++ V +L ERL VV G D +S EAQ+NAT+ F+ L+R
Sbjct: 910 KIFKVDFRKP--SDMHPMEIVEAVDKLQERLKVVPGEDEISKEAQKNATLFFNILLR 964
[38][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
scandens RepID=Q1ACU1_9MAGN
Length = 240
Score = 132 bits (332), Expect = 2e-29
Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ +E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[39][TOP]
>UniRef100_Q1ACT4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus
orientalis RepID=Q1ACT4_PLAOI
Length = 240
Score = 132 bits (332), Expect = 2e-29
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GT RNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P
Sbjct: 20 VKYDGTFRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ +++ D L E+ T GD ++P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFQNVFDAEVRKLEADRYQLGTEITTMGDNSWSMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V L ERL VV G D LS+EAQ+NAT+ F+ L R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDNLQERLRVVPGDDFLSMEAQKNATLFFNILPR 194
[40][TOP]
>UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata
RepID=Q71EU1_9SPER
Length = 1013
Score = 132 bits (331), Expect = 2e-29
Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + + P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYEIDNENWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[41][TOP]
>UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra
RepID=Q71ET9_9CONI
Length = 1013
Score = 132 bits (331), Expect = 2e-29
Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + ++ P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYELDQENWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWN+Q
Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLKRLIWNSQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ + L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDARRP--SDMHPMEIVEAIDRLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[42][TOP]
>UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana
RepID=Q71ET6_MAGSO
Length = 1010
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961
[43][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
RepID=Q2TUN9_THUOC
Length = 1013
Score = 132 bits (331), Expect = 2e-29
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + ++ P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYEIDQENWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P + + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLISIEAQKNATLFFNILLR 964
[44][TOP]
>UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
corallina RepID=Q1ACU9_9MAGN
Length = 240
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVGIEFQKLDSLKMKKSDFDRVFRYEIGDENWNPT 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFEVDLRRP--SDMHPTEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194
[45][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
RepID=Q1ACS9_9CARY
Length = 240
Score = 132 bits (331), Expect = 2e-29
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + PD
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFRYEFDAENWEPD 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RL+WNAQ
Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKRLLWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194
[46][TOP]
>UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron
sinense RepID=Q1ACS5_9MAGN
Length = 240
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ ++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194
[47][TOP]
>UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron
tulipifera RepID=B7SNX0_LIRTU
Length = 1010
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961
[48][TOP]
>UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum
RepID=B7SNW7_CERDE
Length = 1010
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961
[49][TOP]
>UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris
RepID=B7SNW6_BETVU
Length = 1012
Score = 132 bits (331), Expect = 2e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P
Sbjct: 789 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 848
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 849 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 908
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 909 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 963
[50][TOP]
>UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
stegomyiae RepID=A1YIC2_9FUNG
Length = 1014
Score = 132 bits (331), Expect = 2e-29
Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 5/181 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-----TRD 167
V+Y GTVRN+QG+++QF+YGEDGMDA+++E Q + L+ + ++ + YRID
Sbjct: 784 VKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFESKYRIDVMDIEGKAG 843
Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
+PP + + +++ V++ + +E +Q+K+D LR+ LT GD +P+NL R+I
Sbjct: 844 LPPGCVEFGIQQEMQSID-VQKLLDEEFSQLKDDRACLRKIFLT-GDANWPLPMNLKRII 901
Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
WNAQ F RP + L V+ +VR LC++L V+ G D +S+EAQ+NAT++ L+
Sbjct: 902 WNAQNLFKIDKQRP--SNLHPDYVVNQVRGLCDKLTVIRGDDKISLEAQKNATLLTQILI 959
Query: 528 R 530
R
Sbjct: 960 R 960
[51][TOP]
>UniRef100_A1YIC0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catenaria anguillulae
RepID=A1YIC0_9FUNG
Length = 1020
Score = 132 bits (331), Expect = 2e-29
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRN+QG+++QFLYGEDGMD R+E Q+ E L+ +K + +R+D T P
Sbjct: 790 VKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSKFETRFRVDVTEPDTPRG 849
Query: 183 LSAEEYE-----ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
L + E ++T V+ + DE Q++ D R ++V GD + +P NL R+I
Sbjct: 850 LRSASVEFGIMKEIQT-AEVQDLLDDEFRQLQVD-RAQLQQVFKRGDARWPLPGNLNRII 907
Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
WNAQ F +P + L + ++ V+ LC +LVVV G+D LS EAQ+NAT++ LV
Sbjct: 908 WNAQNMFKLDKSKP--SNLHPEHIVASVKSLCTQLVVVPGTDKLSREAQKNATVLMQILV 965
Query: 528 R 530
R
Sbjct: 966 R 966
[52][TOP]
>UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta
RepID=Q71EU0_CYCRE
Length = 1013
Score = 131 bits (330), Expect = 3e-29
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ + YR + + P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYEIDNENWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T + ++ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[53][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 131 bits (330), Expect = 3e-29
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+
Sbjct: 867 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPN 926
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 927 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 986
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 987 KTFRIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLR 1041
[54][TOP]
>UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
aspera RepID=Q1ACU2_9MAGN
Length = 240
Score = 131 bits (329), Expect = 3e-29
Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[55][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
coccinea RepID=Q1ACT1_9ROSI
Length = 240
Score = 131 bits (329), Expect = 3e-29
Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q E LK ++ +K +R + PD
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLESLKMKKSEFNKTFRYEFDDEHWNPD 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F R + + E++ V +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KIFKIDNRR--HSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEAQKNATLFFNILLR 194
[56][TOP]
>UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
piasezkii RepID=Q1ACS3_9MAGN
Length = 240
Score = 131 bits (329), Expect = 3e-29
Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + D+A+R + + P+
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ + GD ++P+NL RLIWNAQ
Sbjct: 80 YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F R + + E++ V +L ERL VV G D +S+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKIDLRRS--SDMHPMEIVETVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 194
[57][TOP]
>UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia
suffruticosa RepID=Q1ACU6_9MAGN
Length = 240
Score = 130 bits (328), Expect = 5e-29
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194
[58][TOP]
>UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
cuneiformis RepID=Q1ACU3_9MAGN
Length = 240
Score = 130 bits (328), Expect = 5e-29
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ +E + L+T E+ +++ D L E+ T GD +P+NL RL+WNAQ
Sbjct: 80 YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLVWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[59][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 130 bits (328), Expect = 5e-29
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA IE Q+ + L+ + ++ID
Sbjct: 864 VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQVLDTLRLGAKEFAAVFQIDPDVSGFNKG 923
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
WLS E+ L V + + E ++++D RV +V GD V++P+N+ R+IWNAQ
Sbjct: 924 WLSNEQASDLAHSTKVREIIDAEWERLQKD-RVELRKVFPTGDPHVHLPVNMKRIIWNAQ 982
Query: 360 TKFNCKPHRPGWT--GLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
++ +RPG + L V VI V EL +L+VV G+D LS+EAQRN T++F + VR
Sbjct: 983 KQYGM--YRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVR 1039
[60][TOP]
>UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q2TUN6_GINBI
Length = 1013
Score = 130 bits (327), Expect = 6e-29
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + + P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEIDNENWNPG 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ A+ E L+T E+ +++ D R L E+ +GD +P+NL RLIWNAQ
Sbjct: 850 YMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964
[61][TOP]
>UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
beckleri RepID=Q1ACV1_9MAGN
Length = 240
Score = 130 bits (327), Expect = 6e-29
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRYFRYEIDDESWNPG 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[62][TOP]
>UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine
herbstii RepID=Q1ACT9_IREHE
Length = 240
Score = 130 bits (327), Expect = 6e-29
Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + DK YR + D PD
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKLEFDKTYRYEFDADNWEPD 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L ++ T GD +P+NL RL+WNAQ
Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLR 194
[63][TOP]
>UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum
RepID=B7SNW9_ILLPA
Length = 1013
Score = 130 bits (327), Expect = 6e-29
Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + +R + D P
Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVFRYEIDNDNWNPS 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 850 YMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 910 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 964
[64][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 129 bits (325), Expect = 1e-28
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P
Sbjct: 868 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 927
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 928 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 987
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 988 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 1042
[65][TOP]
>UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon
punctatum RepID=Q1ACV2_9MAGN
Length = 240
Score = 129 bits (325), Expect = 1e-28
Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRVFRYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRXP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194
[66][TOP]
>UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
integrifolia RepID=Q1ACT6_MACIN
Length = 240
Score = 129 bits (325), Expect = 1e-28
Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ + +R + + P+
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFNTVFRYEIDDENWNPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T G+ +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 140 KTFKLDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLR 194
[67][TOP]
>UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
piasezkii RepID=Q1ACS4_9MAGN
Length = 240
Score = 129 bits (325), Expect = 1e-28
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 194
[68][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7NVN7_VITVI
Length = 1010
Score = 129 bits (325), Expect = 1e-28
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P
Sbjct: 105 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 164
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 165 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 224
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 225 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 279
[69][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
ampullaria RepID=Q1ACT2_9CARY
Length = 240
Score = 129 bits (324), Expect = 1e-28
Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS G V+QFLYGEDGMD+V IE Q E LK ++ D YR + D P+
Sbjct: 20 VKYDGTVRNSLGCVIQFLYGEDGMDSVWIESQKLESLKIKKSEFDMVYRYELNDEDWNPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ + E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F R + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKIDLRRR--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194
[70][TOP]
>UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella
verticillata RepID=Q2PYR5_9FUNG
Length = 1016
Score = 129 bits (324), Expect = 1e-28
Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 12/188 (6%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------R 164
V+Y GTVRNS G V+QF YGEDGMDA +E Q + +K A +K YRID T +
Sbjct: 782 VKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFEKKYRIDLTDKSKSFK 841
Query: 165 DMPPDW------LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIP 326
+ D+ A+E A R +P ++ + E Q+ ED +LR + T GD +P
Sbjct: 842 NGTLDYNVFKQIAEADEEAAKRGEPDMQTLLEQEFKQLDEDRHLLRNYIFTEGDNSWPMP 901
Query: 327 LNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNAT 506
N+ R IWN++ F+ RP + L + ++ ++ L ++LVVV G+D +SVEAQ NAT
Sbjct: 902 TNIRRYIWNSKQMFHVDHKRP--SDLDPRHILESIKNLEKQLVVVRGTDRISVEAQDNAT 959
Query: 507 IMFHSLVR 530
++F L+R
Sbjct: 960 LLFRMLIR 967
[71][TOP]
>UniRef100_Q2PYQ8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Paraglomus occultum
RepID=Q2PYQ8_9GLOM
Length = 847
Score = 129 bits (324), Expect = 1e-28
Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR--DMPP 176
V+Y GTVRNS GDV++F YGEDG D +E Q + L+ A +K Y ID + D+ P
Sbjct: 621 VKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFEKKYYIDLRKDPDLNP 680
Query: 177 DWLSAEEYEALRTDPA--VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
+ ++ + D + +Q + E +++ ED ++LRE + NGD K +P+N+ RLI
Sbjct: 681 SLVDPRVWDRISDDGSDKYQQHLDQEYSKLLEDRKILREFIFPNGDNKWPLPVNIKRLIK 740
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
N+Q F K H G + + E IT + +L ERL VV G D +S+EAQRN+T++F L+R
Sbjct: 741 NSQQTF--KSHLRGGSDIDPIEAITDLNKLSERLKVVNGEDKISIEAQRNSTLLFQILLR 798
[72][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 129 bits (324), Expect = 1e-28
Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P
Sbjct: 870 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPT 929
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+LS E E L+ + E ++++ D L E+ TNGD +P+N+ R IWNAQ
Sbjct: 930 YLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQ 989
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + + E++ V +L ERL+VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 990 KTFKIDLRK--ISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLR 1044
[73][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 129 bits (323), Expect = 2e-28
Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P
Sbjct: 868 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPT 927
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ + + L+ + E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 928 YMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQ 987
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E + V +L ERL VV G D LSVEAQ+NAT+ F L+R
Sbjct: 988 KTFKVDKRRP--SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLR 1042
[74][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=Q2PYS1_9FUNG
Length = 1015
Score = 129 bits (323), Expect = 2e-28
Identities = 70/179 (39%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
V+Y GTVRNS G+++QF YGEDGMD +E Q + ++ K +K+Y++D +
Sbjct: 790 VKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEKFEKSYKVDVMDKEKGFK 849
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P L + + + + + + +E Q+ +D RVLRE + T+GD+ +P NL RL+WN
Sbjct: 850 PGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWN 909
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ +P + L ++I V+ L +RLVVV GSD LS EAQ NAT+++ L+R
Sbjct: 910 AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEAQLNATLLYQCLLR 966
[75][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 129 bits (323), Expect = 2e-28
Identities = 71/181 (39%), Positives = 112/181 (61%), Gaps = 5/181 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT-----RD 167
V+Y GTVRN+QG ++QF YGEDGMD R+E Q+ E L+ + + ++ YRID T +
Sbjct: 778 VKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFERRYRIDLTDPEGKKG 837
Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
+ P + + +++ V+Q + E Q++ED LR + GD + +P N+ R+I
Sbjct: 838 LKPGSVEFGIQQEMQS-IEVQQLLDQEYRQLEEDRERLR-HIFPRGDARWPLPGNIQRII 895
Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
WNAQ F +P + L + V+ +VR+LC++L+V+ G+D +SVEAQRNAT++ LV
Sbjct: 896 WNAQNLFKIDKTKP--SNLHPEYVVNEVRKLCDKLMVIPGTDKISVEAQRNATLLSQILV 953
Query: 528 R 530
R
Sbjct: 954 R 954
[76][TOP]
>UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana
RepID=B7SNX3_PERAE
Length = 1009
Score = 128 bits (322), Expect = 2e-28
Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK + YR + + P
Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFLNVYRYEIDNENWNPG 845
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 846 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 905
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 906 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 960
[77][TOP]
>UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio
picticaulis RepID=Q1ACS6_9ASTR
Length = 240
Score = 128 bits (321), Expect = 3e-28
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ Y+ + + P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKIKRREFNRLYKYELDDENWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ + E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLR 194
[78][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
muscipula RepID=Q1ACU5_DIOMU
Length = 240
Score = 127 bits (320), Expect = 4e-28
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS G V+QFLYGEDGMDAV IE Q + LK ++ KAYR + + P
Sbjct: 20 VKYDGTVRNSLGCVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFLKAYRFEYDDPNWNPK 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ + E L++ P E+++++ D +L ++ T GD +P+NLARLI NAQ
Sbjct: 80 YIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F K G + L E++ V +L ERL VV G D LS EAQRNAT+ F+ L+R
Sbjct: 140 KLF--KIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDDHLSDEAQRNATLFFNILLR 194
[79][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 127 bits (320), Expect = 4e-28
Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA +E Q + L+ D K + + +D +
Sbjct: 848 VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFKRTFHLDPDEPNFGKG 907
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
W+S + L + E Q+K D R +V+T GD V++P+NL R++WNAQ
Sbjct: 908 WMSEAQANDLANSVEKRALLEAEWEQLKLD-RAELHKVMTTGDPSVHLPVNLKRIVWNAQ 966
Query: 360 TKFNC--KPHRPG--WTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
+ PG LQ VI VR + L VV G D LS+EAQRN+TI+F +LV
Sbjct: 967 KNYGLVKDTSAPGRERDELQAVNVIESVRSMLNGLTVVPGGDELSLEAQRNSTILFFALV 1026
Query: 528 R 530
R
Sbjct: 1027 R 1027
[80][TOP]
>UniRef100_A1YIB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mucor hiemalis
RepID=A1YIB5_9FUNG
Length = 1009
Score = 127 bits (320), Expect = 4e-28
Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
V+Y GTVRNS GD+++F YGEDGMDA+ +E Q F LK + + +K Y+ID +
Sbjct: 781 VKYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFEKRYKIDVMNKGFKKG 840
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
LS +++ + + E Q+ ED LR + NGD+K +P+NL RLI N+Q
Sbjct: 841 ALSYNVLKSIEGSETAQAYLDHEFYQLTEDRNKLRTNIFKNGDDKWPLPVNLTRLITNSQ 900
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P +P + + +++ V L +RL+VV GSD +S E Q+NAT++F L+R
Sbjct: 901 QIFHIDPRKP--SDIHPLQIVDGVNALAQRLLVVRGSDKISNETQKNATLLFGILLR 955
[81][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 127 bits (319), Expect = 5e-28
Identities = 68/176 (38%), Positives = 104/176 (59%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRNS GDV+QF+YGEDG+D ++E Q + + ++ Y+ID
Sbjct: 855 VQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFERRYKIDLMNPKTKP- 913
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
L+ E + D V++ + +E Q+ D R+LREEV TNGD +P+N+ R++ N+Q
Sbjct: 914 LNIESGNDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQR 973
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
FN + + L + E++ V+ LC+RL +V G L+ EAQ NAT++F LVR
Sbjct: 974 IFNVDKSKV--SDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCLVR 1027
[82][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 127 bits (318), Expect = 7e-28
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPP-- 176
V+Y GTVRNS GDV+QFLYGEDGMDA IE Q + L++ + + ID D+P
Sbjct: 844 VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSVKEFAAKFHIDP--DVPGFN 901
Query: 177 -DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
WLS E+ L V + + E +++ D RV + GD V++P+N+ R++WN
Sbjct: 902 NGWLSEEQASELAHTAKVREILDAEWDRLQRD-RVELRTICPTGDPHVHLPVNMKRILWN 960
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ ++ G ++V +I V EL +L+VV G+D LSVEAQRN T++F + VR
Sbjct: 961 AQKQYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVR 1019
[83][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5Y7_ANTMA
Length = 780
Score = 126 bits (317), Expect = 9e-28
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + + YR + + + P
Sbjct: 545 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRYEIDSSNWNPS 604
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ +E E L+T + E+ +++ D L + T GD +P+N+ RL+ NAQ
Sbjct: 605 YMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQ 664
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV+G D LS+EAQ+NAT+ F+ L+R
Sbjct: 665 KTFKVDFRRP--SDMHPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLR 719
[84][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 126 bits (317), Expect = 9e-28
Identities = 74/182 (40%), Positives = 100/182 (54%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDA +E Q + L+ K K + +D
Sbjct: 845 VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRDSREKFRKRFHMDPDEPGFGRG 904
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
W+S + L + +E ++ +D LR ++ GD+ V++P+NL R+IWNAQ
Sbjct: 905 WMSEAQVNDLANSAEKRALLEEEWERLLKDREELR-RTMSTGDQNVHLPVNLKRIIWNAQ 963
Query: 360 TKFN-----CKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
+ G LQ VI V+ + LVVV G D LSVEAQRNATI+F +L
Sbjct: 964 NNYRKVKDASSGGSRGGEELQAVHVIESVKSMLNGLVVVPGRDALSVEAQRNATILFFAL 1023
Query: 525 VR 530
VR
Sbjct: 1024 VR 1025
[85][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
RepID=Q2TUN5_EPHVI
Length = 1013
Score = 126 bits (316), Expect = 1e-27
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V+Y TVRNS GDV+QFLYGEDGMDAVRIE Q ++LK + D+ ++ + ++ P
Sbjct: 790 VKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFDETFKHELGQENWHPT 849
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E + ++ + + E +++ D R L E+ G+ +P+NL RLIWNAQ
Sbjct: 850 YMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQ 909
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F P + + +Q E++ + +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 910 KIFKVDPRKT--SDMQPLEIVDTIDKLQERLKVVPGDDPLSFEAQKNATLFFNILLR 964
[86][TOP]
>UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
integrifolia RepID=Q1ACT7_MACIN
Length = 240
Score = 126 bits (316), Expect = 1e-27
Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV E Q + LK ++ +K +R P
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWTETQKLDSLKMKKSEFNKVFRYGIDDESWNPS 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ + L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFLNILLR 194
[87][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 126 bits (316), Expect = 1e-27
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRNS G+++QF YGEDGMD +E Q + ++ K +K+Y++D
Sbjct: 788 VKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMANDKFEKSYKVDVMDKEKGFK 847
Query: 183 LSAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
E+ L+ + + + + +E Q+ +D RVLRE + T+GD+ +P NL RL+WN
Sbjct: 848 SGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWN 907
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ +P + L ++I V+ L +RL+VV GSD LS EAQ NAT+++ L+R
Sbjct: 908 AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEAQLNATLLYQCLLR 964
[88][TOP]
>UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans
RepID=A1YIA8_9ASCO
Length = 1001
Score = 125 bits (315), Expect = 1e-27
Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173
V+Y GTVRNS GD++ F+YGEDG+DA +E Q+ + ++ A ++AYR+D T R +P
Sbjct: 773 VKYDGTVRNSLGDIINFVYGEDGLDAASVEYQVLDTMRLSNAAFEEAYRVDVTDPDRTIP 832
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P + E + D V++ + E ++ ED R L+ + +GD +P+NL R+I N
Sbjct: 833 PSFF--EPGHDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSSWPLPVNLDRIILN 890
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRM 533
++ F+ PHR T L ++ T VR+L RL++V G+D +S E Q+ AT +F LVRM
Sbjct: 891 SKQIFHIAPHRR--TDLSPAKIYTGVRDLLSRLIIVRGNDRISKEHQQQATGLFQILVRM 948
[89][TOP]
>UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces
macroporosum RepID=Q2PYR0_9FUNG
Length = 999
Score = 125 bits (314), Expect = 2e-27
Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176
V+Y GTVRNS GD++QF YGEDGMD R+E Q + A K YRID + P
Sbjct: 774 VKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFKKKYRIDISEPQVFKP 833
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD-EKVNIPLNLARLIWN 353
Y L +PA + + E Q+ +D LR + N +K +P+NL RLIWN
Sbjct: 834 GSCEQSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWN 893
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A F +P T L VI V EL E L+VV G+D LS+EAQ+NAT++F L+R
Sbjct: 894 ACHTFGIDRSKP--TDLNPLHVIKSVNELMENLLVVRGNDQLSIEAQKNATLLFSILLR 950
[90][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
RepID=Q2PYR1_9FUNG
Length = 1022
Score = 125 bits (313), Expect = 3e-27
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y G+VRNS G +VQF YGEDGMD+ +EGQ +++ K + Y + D+ + P
Sbjct: 797 VQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSVNLVRYSDKKFESTYFVDVMDSEKSFP 856
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
L + + + V++ + DE Q+KED +LR+ + +G+ + +P+NL RLI N
Sbjct: 857 SGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLPRLIKN 916
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ +P + L E++ K+R+L + L+V+ G+D L+ EAQ+NAT++F +R
Sbjct: 917 AQQIFHIDHRKP--SNLSPVEIVEKIRKLADSLIVLRGNDSLTREAQQNATLLFQIYLR 973
[91][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
RepID=A7J591_9LECA
Length = 1020
Score = 125 bits (313), Expect = 3e-27
Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GT+RNS GD+VQF+YGEDG+D IE Q + +K AK +K +R+D + P
Sbjct: 788 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQPIDIIKCSDAKFEKDFRVDLMEEDPKTSI 847
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + + V+Q + +E Q+K LR++ D + +PLN++R++
Sbjct: 848 SPDFL--EQATEIAGNVQVQQHLDEEFEQLKAAREFLRKDKPIAADATIYLPLNISRILE 905
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A T FN K + L EVIT+V L ERLVVV G LS E Q NAT++F +L+R
Sbjct: 906 TAMTTFNIK--HGSRSNLDPVEVITEVNRLLERLVVVRGDHSLSKEGQHNATLLFKALLR 963
[92][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 124 bits (312), Expect = 3e-27
Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD++QFLYGEDG+DA+ IE Q ++L K D Y++D P+ L
Sbjct: 864 KYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLNMSNKKFDDRYKLDVMDANKPEEL 923
Query: 186 SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359
EY + DPA +Q + +E + ED RV+RE DE + +PLN+ R++ A+
Sbjct: 924 DWLEYGNEIAGDPASQQLLDEEYEALAEDRRVVREINFRRKDDESMQLPLNIVRIMETAK 983
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
FN + + + L ++VI V + +R+ VV G DGLS EA NATI+F + +R
Sbjct: 984 KLFNVQDFQR--SDLTPQDVIPAVSSMLDRMTVVRGPDGLSKEADYNATILFKAHIR 1038
[93][TOP]
>UniRef100_A7J5B1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teloschistes exilis
RepID=A7J5B1_9LECA
Length = 1003
Score = 124 bits (312), Expect = 3e-27
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +RID D P +
Sbjct: 772 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 831
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SAE E + D V+Q + +E Q+K LR+ + + + +PLN+ R++ A
Sbjct: 832 SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 890
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
T FN K + L EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 891 MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 946
[94][TOP]
>UniRef100_A7J588 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterodermia vulgaris
RepID=A7J588_9LECA
Length = 996
Score = 124 bits (312), Expect = 3e-27
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +RID D P +
Sbjct: 765 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 824
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SAE E + D V+Q + +E Q+K LR+ + + + +PLN+ R++ A
Sbjct: 825 SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 883
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
T FN K + L EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 884 MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 939
[95][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 124 bits (311), Expect = 4e-27
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP--- 173
V+Y GTVR++QG+VVQFLYGEDGMDA ++E Q + + AK Y ++ P
Sbjct: 793 VKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFT 852
Query: 174 ----------------PDWLSAEEYEALRTDPAVE-QAMRDEMAQIKEDLRVLREEVLTN 302
++S + Y+ + DPA +R+E + ED +LR E+ N
Sbjct: 853 NPTESSVSMPSGGILKESFISTKVYDEILKDPATYLSKVREEYKTLMEDRHILRTEIFPN 912
Query: 303 GDEKVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLS 482
+ K+ +P+NL R+I NAQ ++ P + + VI K+++LC+ LVV+ G+D LS
Sbjct: 913 AENKIVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELS 972
Query: 483 VEAQRNATIMFHSLVR 530
EAQ NAT++F +R
Sbjct: 973 TEAQTNATLLFSMFLR 988
[96][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
RepID=Q2PYQ9_9FUNG
Length = 845
Score = 124 bits (311), Expect = 4e-27
Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID---TTRDMP 173
V+Y GTVRNS GDV+QF YGEDGMDA +E Q L ++ YR+D T +
Sbjct: 620 VKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFERRYRLDVLNTKGGLK 679
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P+ L + + + V+ + +E Q++ED L + + GD K +P NL RLI N
Sbjct: 680 PNTLEFDVQRQIEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITN 739
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ +P + L +I VR+L E L+VV GSD +SVEAQRNAT+++ L+R
Sbjct: 740 AQQIFHIDRRKP--SDLNPVNIIEGVRKLSEELLVVRGSDKISVEAQRNATLLYQILLR 796
[97][TOP]
>UniRef100_A7J592 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyxine subcinerea
RepID=A7J592_9LECA
Length = 1015
Score = 124 bits (311), Expect = 4e-27
Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GT+RNS GD+VQFLYGEDG+D IE Q+ + +K A+ +K +R+D D P +
Sbjct: 784 KYDGTIRNSLGDIVQFLYGEDGLDGATIEPQLLDIIKCSDARFEKMFRVDLMEDDPRTSI 843
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SAE E + + V+Q + E Q+K LR+ T+ +E++ +PLN+ R++ A
Sbjct: 844 SAEFLEQATEVAGNIEVQQYLDQEFEQLKAAREFLRKN-KTDENEQLQLPLNVIRILDTA 902
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T FN K + L EVI +V +L +RLVVV G D LS E+Q NAT++F + +R
Sbjct: 903 KTTFNIK--TGARSNLHPAEVIPQVNDLLDRLVVVRGDDALSKESQHNATLLFKAQLR 958
[98][TOP]
>UniRef100_Q1ACT0 RNA polymerase II largest subunit (Fragment) n=2 Tax=Cucurbitaceae
RepID=Q1ACT0_9ROSI
Length = 240
Score = 123 bits (309), Expect = 7e-27
Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ +R + + P+
Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPN 79
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ E E L+T E+ +++ D L E+ T G+ +P+NL RLI NAQ
Sbjct: 80 YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEITTTGENSWPMPVNLKRLIQNAQ 139
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F R + + E++ + +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKIDFRRA--SDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 194
[99][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea scutellifera
RepID=A5H2F1_9LECA
Length = 993
Score = 123 bits (309), Expect = 7e-27
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +R+D + P
Sbjct: 763 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQKLDIIVCSEAKFEKDFRVDLMDNNPRTTI 822
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + TD V++A+ +E Q+K LR+ + E + +PLN+ R++
Sbjct: 823 SPDFL--EQATVIATDQKVQKALDEEYEQLKAAREFLRKN-KKDASEDLQLPLNIPRILE 879
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A T FN K + L EVIT V L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 880 TAMTTFNIK--NGSRSNLDPVEVITDVNNLLDRLVVVRGDDPLSREGQHNATLLFKALLR 937
[100][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 123 bits (308), Expect = 1e-26
Identities = 72/176 (40%), Positives = 101/176 (57%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ ++ Y+ + RD DW
Sbjct: 871 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYKFEIDRD---DW 927
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
P E+++++ D R + E+ G+ +P+NL RLIWNAQ
Sbjct: 928 -----------SPDYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQK 976
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P + + E++ V +L ERL VV G D +S+EAQRNAT+ F L+R
Sbjct: 977 IFKVDFRKP--SDMHPMEIVEAVDKLQERLRVVPGDDQISMEAQRNATLFFGCLLR 1030
[101][TOP]
>UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium
dendrobatidis RepID=Q2PYS7_BATDE
Length = 985
Score = 122 bits (307), Expect = 1e-26
Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMPP 176
+Y GTVRN+ GD+VQF YGEDGM+ ++E Q + A ++YR+D + P
Sbjct: 769 KYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVDILDGVHKLKP 828
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTN-GDEKVNIPLNLARLIWN 353
+ L + + +P + +E Q+ ED +LR+++ N +K +P+NL RLIWN
Sbjct: 829 NKLEYRIIDDMSQNPEAQVKFDEEFEQLAEDRLMLRQQIFPNTSTDKWALPVNLERLIWN 888
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+ F+ ++P + L VI KV+ L + LVVV G D LS+EAQ NAT++F L+R
Sbjct: 889 ARNTFHLDRNKP--SDLHPMHVIDKVKALLDNLVVVRGKDELSLEAQYNATLLFQILLR 945
[102][TOP]
>UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp.
GE13 RepID=Q2PYP9_9FUNG
Length = 813
Score = 122 bits (307), Expect = 1e-26
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173
++Y GTVRNS G ++QF YGEDGMD +E Q E ++ AK +K Y+ID T +
Sbjct: 587 IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 646
Query: 174 PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
P L E L + V++ + +E ++ED ++ RE + NGD +P+N+ RLIW
Sbjct: 647 PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 706
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F+ + + L + K EL +RLVVV G D LS EAQ N+TI F +L++
Sbjct: 707 NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 764
[103][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
frontalis RepID=A1YIC6_NEOFR
Length = 1004
Score = 122 bits (307), Expect = 1e-26
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173
++Y GTVRNS G ++QF YGEDGMD +E Q E ++ AK +K Y+ID T +
Sbjct: 773 IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 832
Query: 174 PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
P L E L + V++ + +E ++ED ++ RE + NGD +P+N+ RLIW
Sbjct: 833 PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 892
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F+ + + L + K EL +RLVVV G D LS EAQ N+TI F +L++
Sbjct: 893 NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 950
[104][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
RepID=A9QMP5_9BILA
Length = 474
Score = 122 bits (306), Expect = 2e-26
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G ++Q YGEDG+D + +E Q +K A +K +++D + D
Sbjct: 71 VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQTMPTMKPSNALFEKEFKLDLSDDKAVRK 130
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ E+ L+ D V + + E Q++ED R+LR ++ GD K+ +P NL RLIWNAQ
Sbjct: 131 VYTEDLIRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 189
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 190 KIFHVETRQP--TSLNPLRVIQGVRELSEKLVIVCGDDRISKQAQYNATLLMNILLR 244
[105][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 122 bits (306), Expect = 2e-26
Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMP-- 173
V+Y GTVRNS GD+V+F+YGEDG+D IE Q + + A + AY++D T D P
Sbjct: 861 VKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCSDADFEAAYKLDVLTTDQPEI 920
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P W E + D V++A+ +E QIK D VLR+ + + +PLN+ R+I +
Sbjct: 921 PVW-KLEGSPMFQGDVDVQRALDEEFEQIKNDRAVLRDTLNEEELDSFQLPLNIQRMIRS 979
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ +F P + + L E I +VRE +RL+V+ G+D LS+EAQ +AT +F + +R
Sbjct: 980 AQARFGINPEK-AVSNLTPIEAIQQVRETLDRLIVIRGTDELSIEAQNSATQLFKAHLR 1037
[106][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 122 bits (306), Expect = 2e-26
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
V Y GT RNS GD++QF+YGEDG+DA ++E Q + + ++ YRID ++
Sbjct: 844 VHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIPGSDESFERRYRIDVLEKNASIS 903
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
E E ++ D +++ + +E Q+ ED + LR+ V NGD +P+NL R+I NAQ
Sbjct: 904 TNLLESGEEIQGDVELQKILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQ 963
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P + L++ E++ VR+LC + +VV G L EAQ NAT++F LVR
Sbjct: 964 QIFHSGRDKP--SDLRLDEIVESVRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVR 1018
[107][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
RepID=Q23699_CRAGI
Length = 1340
Score = 122 bits (305), Expect = 2e-26
Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
V+Y GTVRN +VQ YGEDG+DA +E Q LK ++ ++ D T +
Sbjct: 784 VKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNERNMKK 843
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
LS E + L D + E Q++ED +LR + GD KV +P NL R+IWNAQ
Sbjct: 844 CLSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQ 902
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F H+P T L +V+ V +LC+RL+VV G D LS++A NAT++F L+R
Sbjct: 903 KIFRIDTHKP--TDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIR 957
[108][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 122 bits (305), Expect = 2e-26
Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID--TTRDMPP 176
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YRID T++M
Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYRIDILDTKNMIS 909
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA
Sbjct: 910 ESL-IESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ +R + L+++E+I VRELC++L+VV G L EAQ NAT++F L+R
Sbjct: 969 QQIFHNGRYRA--SDLRLEEIIFGVRELCKKLLVVRGDTPLVKEAQENATLLFQCLLR 1024
[109][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 121 bits (304), Expect = 3e-26
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y GTVRNS GDVVQF+YGEDGMDAV IE Q + LK + D +R + + P+
Sbjct: 868 VKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQNLDSLKMKKEEFDTVFRYELDDENWRPN 927
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+L ++ L+T + E+ +++ D L E+ TNG +P+NL RLIWNAQ
Sbjct: 928 YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F K + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ +R
Sbjct: 988 KTF--KIDIRTCSDMHPIEIVEAIDKLQERLKVVPGDDAISIEAQKNATLFFNIHLR 1042
[110][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
RepID=B7SNX1_TOBAC
Length = 1010
Score = 120 bits (302), Expect = 5e-26
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176
V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D AY ID + P
Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFDDLYAYEIDDP-NWNP 845
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
++ E E L+T + E+ +++ D + L E+ GD +P+N+ RL+ NA
Sbjct: 846 SYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVLNA 905
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F R + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 906 QKTFKIDFRRR--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 961
[111][TOP]
>UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae
RepID=Q2PYS0_9FUNG
Length = 1007
Score = 120 bits (302), Expect = 5e-26
Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G +VQF YGEDGMDA IE Q F+ L+ + + Y + P
Sbjct: 780 VNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTV---KPSGE 836
Query: 183 LSAEE--------YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLA 338
L+ + +A + A +A+ DE AQ+ D +LR V T+G+ + +P+N+
Sbjct: 837 LNVDSALFDNDAFLDAGISYLAFNKALADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIK 896
Query: 339 RLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFH 518
RLI NAQ F+C HRP T L VI+ V L + L V+ G+D LS EA NATI+F
Sbjct: 897 RLIRNAQVMFHCHAHRP--TNLHPSLVISTVERLLKGLTVIRGNDALSEEANTNATILFK 954
Query: 519 SLVR 530
LVR
Sbjct: 955 VLVR 958
[112][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 120 bits (301), Expect = 6e-26
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID----TTRDM 170
V+Y GTVRNS G VVQF+YGEDGMDA +E Q E ++ + + Y++D TR
Sbjct: 790 VKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEEEFKRRYKLDLMTPETRKW 849
Query: 171 PPDWLSAEEYEALRTDPAVEQA--MRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARL 344
P ++ + L D E A + E Q+ ED V+R + NGD +P N+ RL
Sbjct: 850 LPTVVTNDVRHELLGDGMDENAKVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRL 909
Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
IWNA+ K + L+ +E++ V +L R +V+ G DGLS AQ NAT++F+ L
Sbjct: 910 IWNARNM--AKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDGLSTMAQHNATLLFNIL 967
Query: 525 VR 530
VR
Sbjct: 968 VR 969
[113][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
redivivus RepID=A9QMH0_PANRE
Length = 636
Score = 120 bits (300), Expect = 8e-26
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G ++Q YGEDG+D + +E Q +K + +K Y ++ D
Sbjct: 83 VNYDGTVRNSVGQLIQVRYGEDGLDGMWVESQTLPTMKLTNSLFEKKYHLNIHDDKEMSR 142
Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
L S + LR DP V++ + E ++ ED +LR E+ GD K +P NL RLIWNAQ
Sbjct: 143 LYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQ 201
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P T L +I VR+L +RLV+V G+D +S +AQ NAT++ + L+R
Sbjct: 202 KIFHVDLRKP--TELHPATIIEGVRKLGDRLVIVSGTDKISRQAQENATLLMNILLR 256
[114][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 119 bits (299), Expect = 1e-25
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YR+D + P+
Sbjct: 116 VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 172
Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
E + +R D +++ + +E Q+ D R LRE TNGD +P+NL R+I
Sbjct: 173 CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 232
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F+ H+ + L+++E++ V+ELC++L+V+ G L E+Q NAT++F LVR
Sbjct: 233 NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 290
[115][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
RepID=A9QMD9_9BILA
Length = 595
Score = 119 bits (299), Expect = 1e-25
Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V Y GTVRNS G ++Q YGEDG+D + +E Q +K A + +++D T + M
Sbjct: 42 VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQQMLTMKPTNAVFESEFKLDITDEKMLRK 101
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
S + L P + + E AQ++ED R+LR ++ NGD K+ +P NL RLIWNAQ
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL +L++V G D +S +AQ NAT++ + L+R
Sbjct: 161 KIFHIELRKP--TDLSPLRVIEGVRELSRKLIIVSGEDRISKQAQYNATLLMNILLR 215
[116][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 119 bits (299), Expect = 1e-25
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YR+D + P+
Sbjct: 682 VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 738
Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
E + +R D +++ + +E Q+ D R LRE TNGD +P+NL R+I
Sbjct: 739 CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 798
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F+ H+ + L+++E++ V+ELC++L+V+ G L E+Q NAT++F LVR
Sbjct: 799 NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 856
[117][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 119 bits (298), Expect = 1e-25
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ +RI D+++ +P
Sbjct: 850 VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
L E + ++ D +++ + +E Q+ +D + LRE NGD +P+NL R+I N
Sbjct: 910 ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ ++ + L++ EVI VR LCE+L+VV G L EAQ NAT++F LVR
Sbjct: 968 AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024
[118][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5Y6_SOLLC
Length = 773
Score = 119 bits (298), Expect = 1e-25
Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176
V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK D AY ID + P
Sbjct: 545 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDP-NWNP 603
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
++ E E L+ + E+ +++ D L E+ GD +P+N+ RL+ NA
Sbjct: 604 SYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNA 663
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 664 QKTFKIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 719
[119][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
RepID=A9QMG0_OSCTI
Length = 629
Score = 119 bits (298), Expect = 1e-25
Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
V Y GTVRNS G +VQ YGEDG+D + +E Q+ +K A ++ +++D + + M
Sbjct: 82 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQVMSTMKPSNALFERDFKLDLSDEKMMRR 141
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
S + Y L+ +P + + +E AQ++ED R+LR + NGD KV +P NL RLIWNAQ
Sbjct: 142 CYSEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQ 200
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + T L VI V+ L ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 201 KIFHVETREV--TSLNPLAVIRGVKNLSDKLIIVGGEDRISRQAQFNATLLMNILLR 255
[120][TOP]
>UniRef100_A9Q9R3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria fuscula
RepID=A9Q9R3_9EURO
Length = 999
Score = 119 bits (298), Expect = 1e-25
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D P W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKPVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951
[121][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 119 bits (298), Expect = 1e-25
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ +RI D+++ +P
Sbjct: 850 VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
L E + ++ D +++ + +E Q+ +D + LRE NGD +P+NL R+I N
Sbjct: 910 ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ ++ + L++ EVI VR LCE+L+VV G L EAQ NAT++F LVR
Sbjct: 968 AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024
[122][TOP]
>UniRef100_A1YIB7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glomus mosseae
RepID=A1YIB7_GLOMO
Length = 1054
Score = 119 bits (298), Expect = 1e-25
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 17/193 (8%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------ 164
V+Y GTVRNS GD++QF YGEDGMDA +E Q + L DK Y ++ +
Sbjct: 807 VKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSLPISNDTFDKKYLVELPKPEEKEK 866
Query: 165 -----------DMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDE 311
+ L E+ + D V+ ++ E Q+KED +L+ + GD
Sbjct: 867 EKEEKEKENKEEKKKQELEQEKAKIKSHDEIVKDKIKAEYEQLKEDRHLLQTFIFPKGDN 926
Query: 312 KVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEA 491
+ +P+N+ RLI NAQ KF P + + LQ +VI + EL +L VV G D +SVEA
Sbjct: 927 RWPLPVNIKRLIKNAQQKFKIIPSQRTKSDLQFVDVIDSIDELLSKLEVVKGKDRISVEA 986
Query: 492 QRNATIMFHSLVR 530
Q NAT++F L+R
Sbjct: 987 QSNATLLFKILIR 999
[123][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
elegans RepID=Q6JTX1_9BILA
Length = 304
Score = 119 bits (297), Expect = 2e-25
Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRN+ +VQ YGEDG+DAV +E Q +K A +K +++ T+ +
Sbjct: 4 VQYDGTVRNAHQALVQLRYGEDGLDAVAVEFQSLPTMKPSNAAFEKRFKLQTSNERYLRR 63
Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
L + ++ TD V QA+ E Q+K D ++R ++ GD +V +P NL R++WNAQ
Sbjct: 64 LYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQ 122
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ K G T L V+ + EL ++LV+V G D LS EAQ NATI+ ++++R
Sbjct: 123 KIFHIKGR--GTTDLHPVRVVEGLNELMKKLVIVKGEDRLSREAQENATILMNTMLR 177
[124][TOP]
>UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi
RepID=A9QMR2_9BILA
Length = 284
Score = 119 bits (297), Expect = 2e-25
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D T +
Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPSNAVFEKQFKLDITDEKAIKK 141
Query: 183 LSAEE--YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ E+ +E ++ + + +E AQ++ED R+LR+ T D KV +P NL RLIWNA
Sbjct: 142 VYTEDVIHELQQSTSDALKKVEEEWAQLQEDRRLLRKIFPTGDDRKVVLPCNLKRLIWNA 201
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ + +P T L VI ++EL ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 202 QKIFHVETRKP--TSLSPLRVIDGIKELSKKLIIVSGDDSISKQAQYNATLLMNILLR 257
[125][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
RepID=A9QMF3_9BILA
Length = 626
Score = 118 bits (296), Expect = 2e-25
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D + +EGQM +K A +K +++D + D
Sbjct: 78 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDDRSLRR 137
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ +EE L+ + + DE Q++ED R+LR ++ GD KV +P NL RLIWNAQ
Sbjct: 138 IYSEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQ 196
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + T L VI VR + ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 197 KIFKVETRKV--TALNPLRVIEGVRNVSKKLVIVSGDDRISKQAQYNATLLMNILIR 251
[126][TOP]
>UniRef100_Q5I3D2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Clavaria
zollingeri RepID=Q5I3D2_CLAZO
Length = 253
Score = 118 bits (296), Expect = 2e-25
Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 4/182 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS GD++QF+YGEDG+D IE Q + + ++AYR+D T P
Sbjct: 29 VCYDGTVRNSLGDLIQFVYGEDGIDGAFIERQFIDTYGYSHKAFERAYRVDVTD--PARG 86
Query: 183 LSAEEYEALRTDPAVE-QAMRD-EMAQIKEDLRVLREEVLTNGD--EKVNIPLNLARLIW 350
S + D ++E QA D E +Q+++D +VLRE + D E+ ++P+NL+R+
Sbjct: 87 FSPGVLQVGLDDSSLELQAKLDEEYSQLRDDRKVLREFIFPRADPAEQHSLPVNLSRIAQ 146
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F +P + L+ +I V+ELC+RLVVV G D LS EAQ NAT+MF R
Sbjct: 147 NAQQIFRIDRRKP--SDLEPAYIIDSVKELCKRLVVVPGDDPLSREAQDNATLMF----R 200
Query: 531 MH 536
MH
Sbjct: 201 MH 202
[127][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
RepID=A1YIB1_9BASI
Length = 1013
Score = 118 bits (296), Expect = 2e-25
Identities = 66/176 (37%), Positives = 102/176 (57%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS GD+VQF+YGEDG+D +E Q + ++ K DK +R+D T
Sbjct: 786 VTYDGTVRNSLGDIVQFVYGEDGVDGGTVEYQNLDPVRLSNEKFDKKFRVDVTDPAMTYK 845
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
+ + A++ + E Q+ +D ++LRE + T+G+ + +P+N+ R+I NAQ
Sbjct: 846 AGVLQVGLDDSSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQ 905
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P + L ++I V +LC RL+VV G D LS AQ NAT++F L+R
Sbjct: 906 IFHIDFRKP--SDLPPPDIIQMVNDLCNRLIVVRGDDALSRAAQXNATLLFRILLR 959
[128][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 118 bits (295), Expect = 3e-25
Identities = 69/177 (38%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y T+RNS GD++QF+YGEDGMDAV +E Q E +K + K Y+ + R+
Sbjct: 860 VQYDSTLRNSIGDIIQFVYGEDGMDAVYVENQKLESMKMGDKEFGKVYKFEPDARNFGDG 919
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++ A+ + +R + E Q+ D LRE + T+ + +P+NL RLIWNAQ
Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESIPTD-ENTWPLPVNLKRLIWNAQ 978
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P + L ++I V L ++LVV+ G D LSVEAQ NAT++F LVR
Sbjct: 979 KIFHIDVRKP--SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQANATMLFQILVR 1033
[129][TOP]
>UniRef100_A9Q9S3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella mucosa
RepID=A9Q9S3_9EURO
Length = 999
Score = 118 bits (295), Expect = 3e-25
Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +RID W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISLSDNAFEKQFRIDLMEPKKLAW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLRE--EVLTNGDEKVNIPLNLARLIWN 353
E+ ++ D V++ E Q+ ED R LR+ + T+ DE + +P+N+ R++
Sbjct: 835 QGRLEQASEIQGDVDVQKLFDQEYDQLVEDRRFLRDIKQAATSSDEMMPLPMNIVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F+ + P + L VI KV++L +RLVVV G+D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFHIQSGAP--SDLHPSYVIPKVKQLLDRLVVVRGTDRISLEAQENATLLIKAQLR 951
[130][TOP]
>UniRef100_A9Q9S2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria maura
RepID=A9Q9S2_9EURO
Length = 999
Score = 118 bits (295), Expect = 3e-25
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K YR+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLVVV G D +SVEAQ NAT++ + +R
Sbjct: 895 ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDPISVEAQENATLLIKAQLR 951
[131][TOP]
>UniRef100_A9Q9Q5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria
adriatica RepID=A9Q9Q5_9EURO
Length = 988
Score = 118 bits (295), Expect = 3e-25
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K YR+D W
Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 823
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 883
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLVVV G D +SVEAQ NAT++ + +R
Sbjct: 884 ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISVEAQENATLLIKAQLR 940
[132][TOP]
>UniRef100_A9Q9L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavascidium umbrinum
RepID=A9Q9L8_9EURO
Length = 999
Score = 118 bits (295), Expect = 3e-25
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDLMESKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KVR+L ERL VV G+D +SVEAQ NAT++ + +R
Sbjct: 895 ARTTFKIRSGGP--SDLHPSYVIPKVRQLLERLTVVRGNDSISVEAQENATLLIKAQLR 951
[133][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 117 bits (293), Expect = 5e-25
Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------D 167
RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L + +K + DT+ +
Sbjct: 797 RYDGTLRTSSGQIVQFLYGEDGMDAVWIEKQNFDSLTLAKPEFNKRFLFDTSSPEFGHDE 856
Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332
+L + E R DP ++ + E+ ++ED +LR E D+ P N
Sbjct: 857 QGIPFLEPDVIEECRRDPDIQATLDQEIEILREDQAILRIVMRSREAGRESDDSSYAPGN 916
Query: 333 LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512
+ R+I NA +F +P T L EVI V L ERL+VV+G+D LSVEAQ NAT +
Sbjct: 917 VRRVIHNAMRQFRIDKSKP--TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEAQSNATTL 974
Query: 513 FHSLVR 530
+ L+R
Sbjct: 975 YRILIR 980
[134][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
EM434 RepID=A9QMQ7_9BILA
Length = 398
Score = 117 bits (293), Expect = 5e-25
Identities = 68/178 (38%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
V Y GTVRNS +VQ YGEDG+D + +E Q +K A +K +++D + + +
Sbjct: 82 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQAMPTMKPTNALFEKDFKLDLSDEKSLRK 141
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ ++E + A+++A DE Q++ED R+LR ++ +GD K+ +P NL RLIWNA
Sbjct: 142 MYTEDVQHELQGSSEALKEA-EDEWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNA 199
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ + +P T L VI VREL ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFHVETRKP--TDLNPLRVIEGVRELSKKLIIVSGEDRISKQAQYNATLLMNILIR 255
[135][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 117 bits (293), Expect = 5e-25
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPDW 182
+Y GTVRNS GD++QF+YGEDG+D + IE Q ++ DK YR+D ++
Sbjct: 865 QYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPVDHFTISNKAFDKRYRLDVMDEEVSSGE 924
Query: 183 LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLT--NGDEKVNIPLNLARLIWN 353
L A EY + L +DP V++ + E Q+ D +LRE T N D K+ +PLN+ R+I
Sbjct: 925 LEALEYGKELASDPTVQELLDQEYEQLSVDRHMLREIQRTKGNNDTKMQLPLNIIRIIDT 984
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+ F K + L K+VI V+ + +R++VV G D +S EA NATI+F + +R
Sbjct: 985 AKKLF--KVDETARSDLTPKDVIPAVKAMLDRMIVVRGDDPISKEADYNATILFKAQLR 1041
[136][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 117 bits (293), Expect = 5e-25
Identities = 63/176 (35%), Positives = 102/176 (57%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
VRY GTVRN+ GD++QF YGEDG+DA +E Q+F+ L+ + +K YRID D
Sbjct: 856 VRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRS--- 912
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
LS ++ D +V+ + +E Q+ D +L + + GD + +P+N+ R+I NA
Sbjct: 913 LSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQ 972
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L ++I + EL +L + GSD ++ + Q NAT++F L+R
Sbjct: 973 IFHLEAKKP--TDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLR 1026
[137][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BQ02_THAPS
Length = 1627
Score = 117 bits (292), Expect = 7e-25
Identities = 76/188 (40%), Positives = 102/188 (54%), Gaps = 11/188 (5%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------RD 167
RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L + + D+ Y + + D
Sbjct: 859 RYDGTLRTSGGQIVQFLYGEDGMDAVWIERQSFDSLTLNKREFDERYLLHSDDPDFGYDD 918
Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332
+L AE E R +P V+Q + EM +KED +LR E D P N
Sbjct: 919 QNIPFLEAEVIEDCRHNPEVQQMLDREMEVLKEDQAMLRIIMANREAGRESDVNSYAPGN 978
Query: 333 LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512
+ R+I NA +F P + L K+VI K+ + RLVVV+G D LSVEAQ NAT +
Sbjct: 979 VKRVIQNALRQFQIDKGLP--SNLHPKDVIEKIEAMLRRLVVVVGDDLLSVEAQNNATTL 1036
Query: 513 FHSLVRMH 536
+ L+R +
Sbjct: 1037 YRILIRSY 1044
[138][TOP]
>UniRef100_A9Q9T1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria weddellii
RepID=A9Q9T1_9EURO
Length = 999
Score = 117 bits (292), Expect = 7e-25
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K +R+D W
Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L ERL++V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951
[139][TOP]
>UniRef100_A5H2F4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nephroma parile
RepID=A5H2F4_9LECA
Length = 979
Score = 117 bits (292), Expect = 7e-25
Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+DAV IE Q + + + ++ +R+D P +
Sbjct: 765 KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQTMDIIACSDEQFERKFRVDVMDPRPEASI 824
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
S E E L D ++ + +E Q++ LR++ DE++ +P+N+ R++ +A
Sbjct: 825 SPEFLEQANELAGDLEIQGYLDEEYEQLQVAREFLRKD---KRDEQMQLPINVIRILDSA 881
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K + L EVI +VR+L ERLVVV G D LS EAQ NATI+F + +R
Sbjct: 882 KTTFKIKD--GARSNLHPAEVIPQVRDLLERLVVVRGDDDLSREAQHNATILFKAQLR 937
[140][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
V Y G+ RNS GD++QF+YGEDG+D ++E Q + + +K YRID ++ +
Sbjct: 855 VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
L E + ++ D +++ + +E Q++ D R LR+ NGD +P+NL R+I N
Sbjct: 915 ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ H+ + L++ EV+ V++LC +L+V+ G L+ EAQ NAT++F L+R
Sbjct: 973 AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029
[141][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
RepID=Q6E223_9PELO
Length = 606
Score = 116 bits (291), Expect = 9e-25
Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T ++
Sbjct: 65 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDELFMKK 124
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ S + L P + + E Q++ED R+LR ++ GD K+ +P NL RL+WNAQ
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P L VI VREL ++LV+V GSD +S +AQ NAT++ + L+R
Sbjct: 184 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 238
[142][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=O01375_9BILA
Length = 631
Score = 116 bits (291), Expect = 9e-25
Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS +VQ YGEDG+DAV +EGQ ++ + + +++D T +
Sbjct: 78 VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 137
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
L EE + L + A+++A +E Q++ED R+LR ++ GD KV +P NL RLIWNA
Sbjct: 138 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 195
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F + + T L VI +REL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 251
[143][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
palmarum RepID=A9QMG6_9BILA
Length = 633
Score = 116 bits (291), Expect = 9e-25
Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS +VQ YGEDG+DAV +EGQ ++ + + +++D T +
Sbjct: 82 VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 141
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
L EE + L + A+++A +E Q++ED R+LR ++ GD KV +P NL RLIWNA
Sbjct: 142 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 199
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F + + T L VI +REL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 255
[144][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 116 bits (291), Expect = 9e-25
Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ Y+ID T ++
Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA
Sbjct: 910 ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ +R + L+++E++ V+ELC +L+VV G L EAQ NAT++F L+R
Sbjct: 969 QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024
[145][TOP]
>UniRef100_Q0PQ09 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum
RepID=Q0PQ09_9EURO
Length = 1011
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 778 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 837
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 838 QGRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYIKKAATSADEMMPLPMNVVRILNQ 897
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL+VV G D +S+EAQ NAT++ + +R
Sbjct: 898 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 954
[146][TOP]
>UniRef100_Q0MVT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pallidulum
RepID=Q0MVT4_9EURO
Length = 1010
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 785 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKMFRVDLMEPKKLVW 844
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR ++ T+ DE + +P+N+ R++
Sbjct: 845 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRRFLRSIKKAATSADEMMPLPMNVQRILNQ 904
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 905 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 961
[147][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 116 bits (291), Expect = 9e-25
Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176
V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ Y+ID T ++
Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA
Sbjct: 910 ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ +R + L+++E++ V+ELC +L+VV G L EAQ NAT++F L+R
Sbjct: 969 QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024
[148][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
V Y G+ RNS GD++QF+YGEDG+D ++E Q + + +K YRID ++ +
Sbjct: 855 VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
L E + ++ D +++ + +E Q++ D R LR+ NGD +P+NL R+I N
Sbjct: 915 ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ H+ + L++ EV+ V++LC +L+V+ G L+ EAQ NAT++F L+R
Sbjct: 973 AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029
[149][TOP]
>UniRef100_A9Q9S6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria polysticta
RepID=A9Q9S6_9EURO
Length = 999
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFVYGEDGLDGAHIESQRVDIIAMSDSAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYDQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQAGAP--SDLHPTYVIPKVQQLLDRLVIVRGEDPISLEAQNNATLLIKALLR 951
[150][TOP]
>UniRef100_A9Q9S5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria nigrescens
RepID=A9Q9S5_9EURO
Length = 999
Score = 116 bits (291), Expect = 9e-25
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDGAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951
[151][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
RepID=A4RMP1_MAGGR
Length = 1757
Score = 116 bits (291), Expect = 9e-25
Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD++QF+YGEDG+D + IE Q ++L K D Y++D P L
Sbjct: 862 KYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPREL 921
Query: 186 SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359
+A EY + DPAV+Q + +E IK D +++RE D + +PLN+AR+I NA+
Sbjct: 922 NALEYGNEIFGDPAVQQLLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAK 981
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + + L+ ++VI V+ ER+VVV G D +S EA N++I+F + +R
Sbjct: 982 KLFKIDDAQR--SDLKPQDVIPVVKGFLERMVVVPGDDPISKEANYNSSILFKAQLR 1036
[152][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 116 bits (290), Expect = 1e-24
Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
+ Y GTVRNS +VQ YGEDG+DAV IE Q LK +K +++D +
Sbjct: 869 IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ E+ + +D ++ + E Q++ D VLR V GD KV +P NLAR+IWNAQ
Sbjct: 929 ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P T L +V+ VR+L ++LV+V G D +S++AQ NATI+F++L+R
Sbjct: 988 KIFHVNTRAP--TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQANATILFNTLLR 1042
[153][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
plicata RepID=Q6E226_9PELO
Length = 636
Score = 116 bits (290), Expect = 1e-24
Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176
V Y GTVRNS G +VQ YG+DG+D + +E Q +K A ++ +R D T D M
Sbjct: 82 VNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKPTNAVFERDFRTDLTDDNFMRN 141
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ + E ++ A+E+ + E AQ++ED R+LR ++ GD K+ +P NL RLIWNA
Sbjct: 142 SYTDSVIREIQESEDAIEK-VESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNA 199
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F +P L VI VRE+ +L++V G+D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFKVDTRKP--VDLSPLHVIDGVREISSKLIIVSGNDDISRQAQYNATLLMNILLR 255
[154][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
RepID=A9QMF5_9BILA
Length = 630
Score = 116 bits (290), Expect = 1e-24
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D + +E Q +K + A + +++D T
Sbjct: 74 VNYDGTVRNSLAQLIQLRYGEDGLDGMWVENQSMPSMKPNNALFKRDFKLDITDTKALKK 133
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ EE L+++P + + E AQ++ED R+LR ++ GD K+ +P NL RLIWNAQ
Sbjct: 134 MYTEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQ 192
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VR++ ++L++V G D +S +AQ NAT++ + LVR
Sbjct: 193 KIFHVETRKP--TDLHPLRVIEGVRDMAKKLIIVGGEDRISKQAQYNATLLMNILVR 247
[155][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
replicatum RepID=Q2PYS3_9FUNG
Length = 981
Score = 116 bits (290), Expect = 1e-24
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR++ G++VQF+YG+DGMD ++E Q E +K K + Y +D
Sbjct: 759 VKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFRETYFVDAKESC---- 814
Query: 183 LSAE--EYEALR---TDPAVEQAMRDEMAQIKEDLRVLREEVL-TNGDEKVNIPLNLARL 344
+S E EY ++ V++ + +E Q+ ED RVLREE+ + +P+NL R+
Sbjct: 815 ISYELVEYHVVKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRV 874
Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
IW AQ F+ R + L + +I V+EL ER VV+ G D LSVEAQ NAT++F L
Sbjct: 875 IWKAQKLFD----RRKQSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATLLFQIL 930
Query: 525 VR 530
VR
Sbjct: 931 VR 932
[156][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
RepID=C4Y5N4_CLAL4
Length = 1402
Score = 116 bits (290), Expect = 1e-24
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT RNS GD++QF+YGEDG+D +E Q + + AK +K YRID + P
Sbjct: 809 VHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQSVDTIPGSDAKFEKRYRIDL---LDPSK 865
Query: 183 LSAEEY----EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
+E + ++ D +++ + E Q+ +D + LRE NGD +P+NL R+I
Sbjct: 866 SISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQ 925
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
NAQ F+ R + L++ E++ V+ LC +L+V+ G L+ EAQ +AT++F LVR
Sbjct: 926 NAQQIFHSGRQRA--SDLKLDEIVEGVKALCSKLLVIRGKSRLAKEAQEDATLLFQCLVR 983
[157][TOP]
>UniRef100_A9Q9S9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella
striatula RepID=A9Q9S9_9EURO
Length = 999
Score = 116 bits (290), Expect = 1e-24
Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIALSDKAFEKQFRVDLMESKNLTW 834
Query: 183 LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E + ++ D V++ +E Q++ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 HDRLELASEIQGDVDVQKLFDEEYDQLEEDRKFLRFIKQAATSSDEMMPLPMNIVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T FN + + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFNIQSGAA--SDLHPSYVIPKVKQLLDRLVVVRGDDRISIEAQENATLLIKAQLR 951
[158][TOP]
>UniRef100_A9Q9M5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pusillum
RepID=A9Q9M5_9EURO
Length = 999
Score = 116 bits (290), Expect = 1e-24
Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L I KV++L +RLV+V G D +S+EAQ+NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQKNATLLIKALLR 951
[159][TOP]
>UniRef100_A5H275 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecidea fuscoatra
RepID=A5H275_9LECA
Length = 1016
Score = 116 bits (290), Expect = 1e-24
Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P
Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEQKFRVDLMDPRPEASI 844
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + D V+ + +E Q++ LR+ + +E++ +P+N+ R+I
Sbjct: 845 SPDYL--EQANEIAGDLEVQSFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 901
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L EVI +VREL ERLVVV G D LS+EAQ NAT++F + +R
Sbjct: 902 TAKTTFKIK--NGARSNLHPAEVIPQVRELLERLVVVRGDDELSIEAQHNATLLFKAQLR 959
[160][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 115 bits (289), Expect = 2e-24
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
+ Y GTVRNS +VQ YGEDG+DAV IE Q LK +K +++D +
Sbjct: 869 IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ E+ + +D ++ + E Q++ D VLR V GD KV +P NLAR+IWNAQ
Sbjct: 929 ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P T L +V+ VR+L +LV+V G D +S++AQ NATI+F++L+R
Sbjct: 988 KIFHVNTRAP--TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQANATILFNTLLR 1042
[161][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
RepID=A9QMF8_9BILA
Length = 621
Score = 115 bits (289), Expect = 2e-24
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G ++Q YGEDG+D + +E Q +K A +K ++++ T +
Sbjct: 82 VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQNMPTMKPTNALFEKEFKLELTDEKSLRT 141
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
L E+ E + A+++A E Q++ED R+LR ++ GD K+ +P NL RLIWNA
Sbjct: 142 LYTEDVVRELQGSSDALKEA-EAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNA 199
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ + +P T L VI VREL +L++V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFHVETRKP--TDLNPIRVIEGVRELSSKLIIVSGEDRISKQAQYNATLLMNILIR 255
[162][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
RepID=Q2PYR6_9FUNG
Length = 1013
Score = 115 bits (289), Expect = 2e-24
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMPP 176
+Y G++RNSQG +VQF+YGEDGMD IE Q L+ D+ Y++ D P
Sbjct: 788 QYDGSIRNSQGHIVQFVYGEDGMDGCFIEKQKILSLRPSHKVFDRTYKVNVMDHGSIFRP 847
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
L + + + AV++ + DE A++ +D R++RE +L +G +K +PLN+ RLI A
Sbjct: 848 GSLDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIA 907
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCE-RLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q FN RP + L E++ V+ L E R+ V+ G D LSVEAQ NAT++F +R
Sbjct: 908 QQTFNIDVRRP--SNLNPVEIVNLVKSLTESRIPVIRGEDQLSVEAQTNATLLFQIHLR 964
[163][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 115 bits (289), Expect = 2e-24
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT RNS GD++QFLYGEDG+D ++E Q + + K Y +D +
Sbjct: 851 VHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIK 910
Query: 183 LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
EY A + D +++ + E Q+ D + LRE V NGD +P+NL R+I NAQ
Sbjct: 911 PDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQ 970
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ R + L + E+I VR+LC++L V+ G + L EAQ+NAT +F LVR
Sbjct: 971 QIFHL--DRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVR 1025
[164][TOP]
>UniRef100_A9X991 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia
caesiocinerea RepID=A9X991_9LECA
Length = 989
Score = 115 bits (289), Expect = 2e-24
Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D IE Q + + A+ +K +R+D P +
Sbjct: 768 KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825
Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SA+ E +T D V+ + +E Q+K LR + +E+ +P+N+ R++ +A
Sbjct: 826 SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K P + L EVI +VRE+ RLVVV G D LS E Q NATI+F + +R
Sbjct: 885 KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940
[165][TOP]
>UniRef100_A9X990 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia cinerea
RepID=A9X990_9LECA
Length = 989
Score = 115 bits (289), Expect = 2e-24
Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D IE Q + + A+ +K +R+D P +
Sbjct: 768 KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825
Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SA+ E +T D V+ + +E Q+K LR + +E+ +P+N+ R++ +A
Sbjct: 826 SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K P + L EVI +VRE+ RLVVV G D LS E Q NATI+F + +R
Sbjct: 885 KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940
[166][TOP]
>UniRef100_A9Q9N3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lachneum
RepID=A9Q9N3_9EURO
Length = 989
Score = 115 bits (289), Expect = 2e-24
Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPRKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYINKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R
Sbjct: 895 AQTTF--KIQSGAASDLHPSHVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 951
[167][TOP]
>UniRef100_A9Q9L6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium
cinereum RepID=A9Q9L6_9EURO
Length = 622
Score = 115 bits (289), Expect = 2e-24
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 398 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMESKKLVW 457
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++
Sbjct: 458 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATTSDEMMPLPMNILRILNQ 517
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R
Sbjct: 518 ARTTFKIQLGSP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 574
[168][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
drosophilae RepID=Q6E224_9PELO
Length = 633
Score = 115 bits (288), Expect = 2e-24
Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
V Y GTVRNS G +VQ YGEDG+D + +E Q +K + A ++ +R D T ++
Sbjct: 81 VNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDEVFMKK 140
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ S + L + + E Q++ED R+LR ++ GD K+ +P NL RL+WNAQ
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P L VI VREL ++LV+V GSD +S +AQ NAT++ + L+R
Sbjct: 200 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 254
[169][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
Length = 254
Score = 115 bits (288), Expect = 2e-24
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V+Y T+RNS G +VQ YGEDG+D +EGQ L+ D+ Y T +
Sbjct: 30 VKYDATIRNSNGQLVQLRYGEDGIDGAHMEGQKLNSLELGDYAFDRRYHFSYTNERQLKK 89
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
++S + L +P + +E A++ +D +LR E+ +G+ KV +P NL+R+IWNAQ
Sbjct: 90 FISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQ 148
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F K + + L +VI V ELC++LV+V G D +S EAQ NAT++ + +R
Sbjct: 149 KTF--KINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEAQYNATLLINIHLR 203
[170][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
RepID=A9QMF2_9PELO
Length = 629
Score = 115 bits (288), Expect = 2e-24
Identities = 65/178 (36%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D + +EGQM +K A +K +++D + +
Sbjct: 78 VNYDGTVRNSLAQLIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDERSLRR 137
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ +E+ + L + A+++ + +E Q++ED R+LR ++ G+ KV +P NL RLIWNA
Sbjct: 138 VYSEDVVRDLLGSSSALKE-VEEEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNA 195
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F + + T L V+ VR+L ++L++V+G D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKVETRKV--TALNPLRVVQGVRDLSKKLIIVMGDDRISKQAQYNATLLVNILIR 251
[171][TOP]
>UniRef100_A1YIC3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entophlyctis
confervae-glomeratae RepID=A1YIC3_9FUNG
Length = 1013
Score = 115 bits (288), Expect = 2e-24
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRN+ G++VQF YGEDGMD ++E Q + + K Y++D D
Sbjct: 784 QYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNMGTSDQAFVKMYKVDMASDKHKFRN 843
Query: 186 SAEEYEALRTDPAVEQAMR--DEMAQIKEDLRVLREEVLTNGDEKV-NIPLNLARLIWNA 356
+ E++ E R E Q++ D R LR+E+ +PLN+ R+IWNA
Sbjct: 844 NVLEFKISEDLMKTEAQARFDAEFEQLEHDRRTLRQEIFAGSSTTAWPLPLNIRRMIWNA 903
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q FN +P T L V+ +V+ L ++L+VV GSD LS E Q NAT++FH L+R
Sbjct: 904 QNAFNIDRTKP--TNLHPITVMNEVQNLLDKLIVVRGSDELSKEGQDNATLLFHILIR 959
[172][TOP]
>UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata
RepID=O02478_9ARAC
Length = 194
Score = 115 bits (287), Expect = 3e-24
Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT+RNS G V+QF YGEDG+D +E Q LK +K ++ D T +
Sbjct: 12 VTYDGTIRNSTGQVIQFRYGEDGLDGCCVEFQNLPTLKPSNKAFEKRFKFDATNERYLRR 71
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ E+ E + + A+ + R E ++KED ++LR V T GD KV +P NL+R+IWNA
Sbjct: 72 IFTEDVVRELMGSSTALSELER-EWERLKEDRKMLR-LVFTTGDSKVVMPCNLSRMIWNA 129
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F+ P + L +VI V +L ++L++V G D LS++A NAT++F SL+R
Sbjct: 130 QKIFHVNLRSP--SDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQANDNATLLFRSLLR 185
[173][TOP]
>UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus
RepID=C3U0C3_9EURO
Length = 618
Score = 115 bits (287), Expect = 3e-24
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVRNS GDVVQF+YGEDG+D I+ Q + ++ K K +R+D M P+W
Sbjct: 397 VKYDGTVRNSLGDVVQFVYGEDGLDGAHIKNQRVDVIRCSNDKFKKRFRVDL---MDPEW 453
Query: 183 LSA----EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
E+ ++ D V++ + +E Q+ +D LR V +E + +P+N+ R++
Sbjct: 454 TLGPEVLEQANEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILE 512
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+A+T F + + L EVI +VR L +RLV+V G+D +S EAQ NAT++F + +R
Sbjct: 513 SAKTTFRIR--EGTISDLHPAEVIPQVRALLDRLVIVRGNDDISREAQENATLLFKAHLR 570
[174][TOP]
>UniRef100_A9Q9T3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria viridula
RepID=A9Q9T3_9EURO
Length = 999
Score = 115 bits (287), Expect = 3e-24
Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K +R+D W
Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+++ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMDVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L ERL++V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951
[175][TOP]
>UniRef100_A9Q9M3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon
petrolepideum RepID=A9Q9M3_9EURO
Length = 964
Score = 115 bits (287), Expect = 3e-24
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 766 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 825
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 826 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 885
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 886 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 942
[176][TOP]
>UniRef100_A9Q9M2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon adscendens
RepID=A9Q9M2_9EURO
Length = 999
Score = 115 bits (287), Expect = 3e-24
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951
[177][TOP]
>UniRef100_A9Q9M1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum
RepID=A9Q9M1_9EURO
Length = 999
Score = 115 bits (287), Expect = 3e-24
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL+VV G D +S+EAQ +AT++ + +R
Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQEDATLLIKAQLR 951
[178][TOP]
>UniRef100_A9Q9M0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon luridum
RepID=A9Q9M0_9EURO
Length = 999
Score = 115 bits (287), Expect = 3e-24
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLTEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL+VV G D +S+EAQ N T++ + +R
Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENPTLLIKAQLR 951
[179][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus
RepID=A1YIC4_9FUNG
Length = 1003
Score = 115 bits (287), Expect = 3e-24
Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS G +VQF YGEDGMD ++E Q F+ + + +K YR+D D
Sbjct: 776 QYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFEKKYRVDIA-DPRYKLT 834
Query: 186 SAEEYEA--LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
S ++ A L DP + + E + E R+LRE+V +GD + +P+NL RLI NA
Sbjct: 835 SLDQKIAGDLLNDPGSQSLLDGEFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANAT 894
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P L VI V+ L ++LVVV G D LS+ AQ+NAT++F L++
Sbjct: 895 RSFHIDRRKP--VDLNPTVVIQGVQMLLDKLVVVRGYDTLSILAQQNATLLFQILLK 949
[180][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
RepID=Q6E232_9PELO
Length = 601
Score = 114 bits (286), Expect = 3e-24
Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T D +
Sbjct: 65 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDRFLEN 124
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
E+ E + A+E+ + E AQ+ ED R+LR ++ GD K+ +P NL RL+WNA
Sbjct: 125 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 182
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F +P L VI VREL ++L++V G+D +S +AQ NAT++ + L+R
Sbjct: 183 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 238
[181][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
RepID=P91819_ZELPU
Length = 629
Score = 114 bits (286), Expect = 3e-24
Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
V Y GTVRNS G +VQ YGEDG+D + +E Q +K + + +K +++D T RD+
Sbjct: 75 VNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFEKQFKLDLTDERDLRR 134
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ + E L + A+ + + E Q++ED R+LR ++ GD KV++P NL RLIWNA
Sbjct: 135 IYXDSVVRELLGSADALRE-VESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNA 192
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P L V+ VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 193 HKIFHVDLKKP--VDLNPLRVVEGVRELNKKLVIVSGEDRISKQAQYNATLLMNILLR 248
[182][TOP]
>UniRef100_A9Q9R7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria hydrela
RepID=A9Q9R7_9EURO
Length = 999
Score = 114 bits (286), Expect = 3e-24
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDHAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFKIQSGCP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951
[183][TOP]
>UniRef100_A9Q9M8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocatapyrenium
rhizinosum RepID=A9Q9M8_9EURO
Length = 999
Score = 114 bits (286), Expect = 3e-24
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K + +D W
Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFHVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951
[184][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=O01364_9BILA
Length = 633
Score = 114 bits (285), Expect = 4e-24
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D +
Sbjct: 78 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 137
Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
E + +R +A+R+ E AQ++ED R+LR ++ GD K+ +P NL RL+WN
Sbjct: 138 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 194
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ + +P T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 195 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 251
[185][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
armata SB363 RepID=A9UEE2_9BILA
Length = 475
Score = 114 bits (285), Expect = 4e-24
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G ++Q YGEDG+D + +E Q +K +K +++D +
Sbjct: 72 VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQHMPTMKPTNIVFEKEFKLDVADEKSLRK 131
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
L E+ L+ + E AQ++ED R+LR ++ GD K+ +P NL RLIWNAQ
Sbjct: 132 LYTEDVVRELQGSTEALKESEGEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 190
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI +REL +LV+V G D +S +AQ NAT++ + L+R
Sbjct: 191 KIFHVETRKP--TDLNPLRVIEGIRELSTKLVIVSGEDRISQQAQYNATLLMNILIR 245
[186][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
RepID=A9QMQ5_9BILA
Length = 276
Score = 114 bits (285), Expect = 4e-24
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D +
Sbjct: 71 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 130
Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
E + +R +A+R+ E AQ++ED R+LR ++ GD K+ +P NL RL+WN
Sbjct: 131 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 187
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ F+ + +P T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 188 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 244
[187][TOP]
>UniRef100_A9Q9P1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii
RepID=A9Q9P1_9EURO
Length = 999
Score = 114 bits (285), Expect = 4e-24
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G+VVQF+YGEDG+D IE Q + + A +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR + + DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI KVR+L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[188][TOP]
>UniRef100_A9Q9P0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii
RepID=A9Q9P0_9EURO
Length = 989
Score = 114 bits (285), Expect = 4e-24
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G+VVQF+YGEDG+D IE Q + + A +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR + + DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI KVR+L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[189][TOP]
>UniRef100_A9Q9N0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis
cinerascens RepID=A9Q9N0_9EURO
Length = 999
Score = 114 bits (285), Expect = 4e-24
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAFEKQFRVDLMEPTKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ E Q+ ED R LR ++ T DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDVEYEQLVEDRRFLRYIKQAATTSDEMMPLPMNILRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISLEAQENATLLLKAQLR 951
[190][TOP]
>UniRef100_A9Q9M7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heteroplacidium
imbricatum RepID=A9Q9M7_9EURO
Length = 999
Score = 114 bits (285), Expect = 4e-24
Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIRKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ +R
Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKGQLR 951
[191][TOP]
>UniRef100_A7J5B0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Flavoparmelia caperata
RepID=A7J5B0_9LECA
Length = 1008
Score = 114 bits (285), Expect = 4e-24
Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P +
Sbjct: 777 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDVILCSTKQFERKFRVDLMDSQPETSI 836
Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
S E E D ++ + DE Q+++D RV ++ + E + +PLN+ R++ A
Sbjct: 837 SPEFLEQANEMIGDVETQKHLDDEYRQLEKD-RVELRKIRQDDTENLQLPLNVLRILETA 895
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K + L EVI +V+EL +RLVVV G+D LS EAQ NAT++F +R
Sbjct: 896 KTTFKIK--TGARSNLHPAEVIPQVQELLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 951
[192][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 114 bits (284), Expect = 6e-24
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y T RNS G+++QFLYGEDGM IEGQ E L+ D +++K ++++ R+
Sbjct: 770 VQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMNLDDRNFGEG 829
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+L + +R + + E Q+ +D LR E++ +G+ V++P+NL RLIWNAQ
Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+ +P + L+ ++ V L +LVV+ G D LS EAQ NAT +F+ +R
Sbjct: 890 KIYKVDTSKP--SDLRPDIILQGVELLSTQLVVIAGEDTLSREAQENATRLFNIHLR 944
[193][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 114 bits (284), Expect = 6e-24
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
V+Y TVRNS GDV+QFLYGEDGMD +E Q + LK + Y+ D +
Sbjct: 779 VKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGVVLKYQHDYDSPSWGEG 838
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
W+ +A+ P ++ + E QI D R+LRE++ GD++ +P+NL R+I NAQ
Sbjct: 839 WIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQ 898
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P + + L +++ + L ERLVV+ G D +S EAQ NA ++F L+R
Sbjct: 899 KIFHLGPKKV--SDLDPCQIVEDLGNLIERLVVIPGQDDISKEAQANAILLFSILLR 953
[194][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 114 bits (284), Expect = 6e-24
Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRN+ ++Q YGEDG+D IE Q LK + +R D +
Sbjct: 861 VHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEKRLKQ 920
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+L ++ TD V++ ++ E Q+ +D +R +L NGD +V +P+NL RLIWNAQ
Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P + + L +VI V EL +LV+V G D +S +AQ NAT++F+ L+R
Sbjct: 980 KIFHVDPRKS--SDLHPMKVIDDVCELSRKLVIVHGEDRISKQAQENATLLFNILLR 1034
[195][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QMT2_9PELO
Length = 488
Score = 114 bits (284), Expect = 6e-24
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + +
Sbjct: 64 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 123
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ + + L+ + + E AQ++ED R+LR ++ G+ K+ +P NL RLIWNAQ
Sbjct: 124 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 182
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 183 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 237
[196][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
RepID=A9QMG7_9BILA
Length = 583
Score = 114 bits (284), Expect = 6e-24
Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D +EGQ +K A +K +++D + +
Sbjct: 65 VNYDGTVRNSLAQMIQLRYGEDGLDGTWVEGQFMPTMKLTNAAFEKQFKLDLSDEKALRR 124
Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+E+ L + A+++ + +E Q++ED R+LR ++ GD KV +P NL RLIWNA
Sbjct: 125 GYSEDIVRNLLGSSTALKE-VEEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 182
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F + +P + L VI VRE+ ++L++V G D +S AQ NAT++ + LVR
Sbjct: 183 QKIFKVETRKP--SSLNPLRVIEGVREMSKKLIIVCGDDRISKHAQYNATLLMNILVR 238
[197][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
RepID=A9QME0_9PELO
Length = 633
Score = 114 bits (284), Expect = 6e-24
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + +
Sbjct: 78 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 137
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ + + L+ + + E AQ++ED R+LR ++ G+ K+ +P NL RLIWNAQ
Sbjct: 138 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 196
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 197 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 251
[198][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
RepID=Q0U9K8_PHANO
Length = 1720
Score = 114 bits (284), Expect = 6e-24
Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 5/181 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPD- 179
V+Y GTVRNS GD+++F+YGEDG+D IE Q + + AK +K +++D P
Sbjct: 868 VKYDGTVRNSLGDIIEFIYGEDGLDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQI 927
Query: 180 ----WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
A E++ D +++ + +E QIK D LR + + ++ +PLN+AR+I
Sbjct: 928 PTSKLAGANEFQG---DVDIQRHLDEEFDQIKIDREYLRTVIGQDDSQQFQLPLNIARMI 984
Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
+AQ +F K + + L EV+ +VR+L + LVV+ G+D LSVEAQ +AT +F +
Sbjct: 985 ESAQMRFGIKKGQ-NVSDLHPTEVVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHL 1043
Query: 528 R 530
R
Sbjct: 1044 R 1044
[199][TOP]
>UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus
RepID=C3U0B2_9EURO
Length = 993
Score = 114 bits (284), Expect = 6e-24
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GDVVQFLYGEDG+D IE Q + +K K + +R+ D R +
Sbjct: 772 VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDIIKCSDEKFYERFRVDLMDPERSLG 831
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P+ L E+ + D V++ + +E Q+++D LR V +E + +P+N+ R++ +
Sbjct: 832 PEVL--EQATEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLPINVQRILES 888
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + + L EVI +V+ L +RLVVV G+D +S EAQ NAT++F + +R
Sbjct: 889 AKTTFRIRD--GNISDLHPSEVIPQVQALLDRLVVVRGNDEISREAQDNATLLFKAQLR 945
[200][TOP]
>UniRef100_A9Q9R1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria dolosa
RepID=A9Q9R1_9EURO
Length = 999
Score = 114 bits (284), Expect = 6e-24
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + ++ +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFERQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ DE Q+ ED R LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[201][TOP]
>UniRef100_A9Q9M4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon psorodeum
RepID=A9Q9M4_9EURO
Length = 999
Score = 114 bits (284), Expect = 6e-24
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQALEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGSP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951
[202][TOP]
>UniRef100_A7J5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gyalideopsis vulgaris
RepID=A7J5B2_9LECA
Length = 1015
Score = 114 bits (284), Expect = 6e-24
Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 6/181 (3%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D IE Q + + K + +R++ D P +
Sbjct: 784 KYDGTVRNSLGDIVQFIYGEDGLDGSFIEAQKVDIIACSDQKFQRMFRVNLLDDDPETSI 843
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQI---KEDLRVLREEVLTNGDEKVNIPLNLARLI 347
S E E ALR D ++ + +E Q+ +E LR+ R++ G+E++ +P+N+ R++
Sbjct: 844 SPEFLESATALRGDLQAQEHLEEEYKQLLAARESLRINRQD----GNEQLQLPINVIRIL 899
Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
A+T F K + L EVI +V +L +RLVV+ G D LS E Q NAT++F + +
Sbjct: 900 DTAKTTFKIKD--GARSNLHPAEVIPQVNQLLDRLVVIRGDDILSKEGQHNATLLFKAQL 957
Query: 528 R 530
R
Sbjct: 958 R 958
[203][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
nematode RepID=O01376_9BILA
Length = 633
Score = 113 bits (283), Expect = 8e-24
Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T R +
Sbjct: 78 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDHRFLEN 137
Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+ E + A+E+ + E AQ+ ED R+LR ++ GD K+ +P NL RL+WNA
Sbjct: 138 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 195
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
Q F +P L VI VREL ++L++V G+D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 251
[204][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QME1_9BILA
Length = 628
Score = 113 bits (283), Expect = 8e-24
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + +
Sbjct: 75 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 134
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ + + L+ + + E Q++ED R+LR ++ NG+ K+ +P NL RL+WNAQ
Sbjct: 135 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 193
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL ++L++V G D +S +AQ NAT++ + LVR
Sbjct: 194 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGEDRISKQAQYNATLLMNILVR 248
[205][TOP]
>UniRef100_Q0PQ14 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladonia caroliniana
RepID=Q0PQ14_9LECA
Length = 1016
Score = 113 bits (283), Expect = 8e-24
Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GTVRNS GD+VQF+YGEDG+DAV IE Q + + + +K +++D P
Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDKQFEKKFKVDLMDPKPDTSI 844
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + D +Q + DE ++ LR + +E++ +PLN+ R++
Sbjct: 845 SPDFL--EQANEMIGDLETQQYLDDEYNKLLAAREFLR-STRADDNEQLQLPLNVIRILD 901
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + LQ EV+TKV EL ++LV+V G D LS E Q NAT++F + +R
Sbjct: 902 TAKTTFKIK--NGARSNLQPVEVVTKVNELLDKLVIVRGDDELSREGQHNATLLFKAQLR 959
[206][TOP]
>UniRef100_A9Q9N2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria chiloensis
RepID=A9Q9N2_9EURO
Length = 999
Score = 113 bits (283), Expect = 8e-24
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIISMSNDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR + T+ DE + +P+N+ R++
Sbjct: 835 HDRLEQAPEIHGDIDVQKLFDEEYEQLVEDRKFLRFINKAATSSDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQT F +P + L VI KV++L ERLV+V G D +S EAQ NAT++ + +R
Sbjct: 895 AQTTFKIQPGAA--SDLHPSYVIPKVKQLLERLVIVRGEDKISREAQDNATLLIKAQLR 951
[207][TOP]
>UniRef100_A9Q9L7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium daedaleum
RepID=A9Q9L7_9EURO
Length = 999
Score = 113 bits (283), Expect = 8e-24
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRYIKKAATTADEMMPLPMNILRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFKIQLGCP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 951
[208][TOP]
>UniRef100_A5H2E9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia dialyta
RepID=A5H2E9_9LECA
Length = 994
Score = 113 bits (283), Expect = 8e-24
Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D IE Q + + ++ +R+D + P +
Sbjct: 777 KYDGTVRNSLGDIVQFIYGEDGLDGTAIEQQRLDIILCSNRDFERNFRVDLMENDPDTSI 836
Query: 186 SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD---EKVNIPLNLARLIWNA 356
SAE + T+ A +++ + Q E L+ R + N E++ +PLN+AR+I A
Sbjct: 837 SAEILDQ-ATEIAGNVEVQEHLDQEYEQLKAARTFLRKNKQDDIEQLQLPLNVARIIDTA 895
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F+ K G + L EVI +V +L +RL+VV GSD LS+E+Q NAT++F + +R
Sbjct: 896 RTTFHIK--SGGRSNLHPAEVIPQVNDLLDRLIVVRGSDPLSLESQHNATLLFKAQLR 951
[209][TOP]
>UniRef100_A5H288 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia stillingiana
RepID=A5H288_9LECA
Length = 1002
Score = 113 bits (283), Expect = 8e-24
Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D IE Q + + A + +R+D + P +
Sbjct: 785 KYDGTVRNSLGDIVQFIYGEDGLDGAAIEPQRVDIIICSDAHFEHMFRVDVMENDPKTSI 844
Query: 186 SA---EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SA E+ + + V+Q + E Q+K LR + + +E++ +PLN+ R++ A
Sbjct: 845 SADILEQATEIAGNVEVQQHLDQEWEQLKAAREFLR-KTRQDDNEQLQLPLNVVRILDTA 903
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T FN K + + L EVIT+V+EL L+VV G D LS+E+Q NAT++F + +R
Sbjct: 904 RTTFNIK--QGSRSDLHPVEVITEVKELLGELIVVRGDDPLSLESQHNATLLFKAQLR 959
[210][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 113 bits (283), Expect = 8e-24
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GT RNS GDV+QF+YGEDG+DA +E Q + + A +K YR+D +
Sbjct: 773 VHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFEKKYRVDLMDEKKSIR 832
Query: 183 LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
EY + D +++ + +E Q+ +D LR V +G+ +P+N+ R++ NAQ
Sbjct: 833 PDVVEYGSEILGDIKLQKILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQ 892
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ ++ + L ++E++ V+ELC++ VV G G EA+ N+T++F L+R
Sbjct: 893 QIFHVDRYKA--SDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARENSTLLFQCLIR 947
[211][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
RepID=Q6E228_9BILA
Length = 621
Score = 113 bits (282), Expect = 1e-23
Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D T +
Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNAMFEKEFKLDLTDEKTLRK 141
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ + E L+ + + E Q++ED R+LR ++ GD K+ +P NL RLIWNAQ
Sbjct: 142 FYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 200
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI ++EL +L++V G D +S +AQ NAT++ + L+R
Sbjct: 201 KIFHVETRKP--TDLNPLRVIDGIKELSSKLIIVSGEDRISQQAQYNATLLMNILIR 255
[212][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
regenfussi RepID=A9QMG9_9BILA
Length = 620
Score = 113 bits (282), Expect = 1e-23
Identities = 67/176 (38%), Positives = 100/176 (56%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS +VQ YGEDG+D + +E Q +K A ++ +++D +
Sbjct: 75 VNYDGTVRNSMAQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFEREFKLDLGDERMLRK 134
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
+ +E P + + E AQ++ED R+LR ++ GD KV +P NL RLIWNAQ
Sbjct: 135 IYTDEVVRELQTPEALKEVESEWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQK 193
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + + T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 194 VFHVETRKQ--TELNPLRVIEGVRELSKKLVIVGGDDRISKQAQFNATLLMNILLR 247
[213][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
RepID=A9QMG2_9BILA
Length = 273
Score = 113 bits (282), Expect = 1e-23
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G +VQ YGEDG+D + +E Q +K A ++ +++D T +
Sbjct: 68 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQSMPSMKPSNALFERDFKLDLTDEKTLKK 127
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
E+ L+ P + + +E AQ++ED R+LR ++ + G+ K +P NL RLIWNAQ
Sbjct: 128 CYTEDLIRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQ 186
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + P L VI VR L E+L++V G D +S +AQ NAT++ + L+R
Sbjct: 187 KIFHVEKREP--VCLNPLNVIRGVRSLSEKLIIVGGEDRISKQAQYNATLLMNILLR 241
[214][TOP]
>UniRef100_Q0PPZ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lichinella iodopulchra
RepID=Q0PPZ6_9PEZI
Length = 1020
Score = 113 bits (282), Expect = 1e-23
Identities = 65/178 (36%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD++QF+YGEDG+D V++E Q + + ++ + +RID P +
Sbjct: 791 KYDGTVRNSLGDIIQFVYGEDGLDGVQVEEQRVDIIACSDSQFEDKFRIDLMDSNP--GI 848
Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
SAE E + D V+ + +E Q+K D LR + T+ +EK+++P N+ R+I A
Sbjct: 849 SAEVLEQASEIIGDIKVQHYLDEEWEQLKADREFLRSQ-STDDNEKMHLPFNVIRIIETA 907
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
++ F K + G + L +VI V++L RL+++ G D LS+E+Q NAT++F +R
Sbjct: 908 KSTFKLKDN--GRSDLHPVDVIPAVKDLLSRLIIIRGDDPLSIESQENATLLFKIQLR 963
[215][TOP]
>UniRef100_A9Q9U1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verruculopsis
poeltiana RepID=A9Q9U1_9EURO
Length = 988
Score = 113 bits (282), Expect = 1e-23
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 823
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYDQLVEDRQFLRSIKKAATSADEMMPLPMNVVRILDQ 883
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 884 ARTTFAIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940
[216][TOP]
>UniRef100_A9Q9P7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Staurothele fissa
RepID=A9Q9P7_9EURO
Length = 999
Score = 113 bits (282), Expect = 1e-23
Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
++ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++
Sbjct: 835 QDRLDQASEIHGDVDVQKMFDEEYEQLVEDRRFLRRIKKAATTSDEMMPLPMNIVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQSGATSDLHASYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[217][TOP]
>UniRef100_A5H295 DNA-directed RNA polymerase (Fragment) n=1 Tax=Protopannaria
pezizoides RepID=A5H295_9LECA
Length = 1016
Score = 113 bits (282), Expect = 1e-23
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ YR+D P +
Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFERKYRVDVMDPRPEATI 844
Query: 186 SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
S E E L D V+ +E Q++ LR+ + D+ + +P+N+ R++ A
Sbjct: 845 SPEFLEQAHDLTGDSEVQAHFDEEYEQLQAARDFLRKNKQDDNDQ-LQLPINVIRILDTA 903
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K + L EVI +VR+L ERL+VV G D LS EAQ NAT++F + +R
Sbjct: 904 KTTFKIKDGTR--SNLHPTEVIPQVRDLLERLIVVRGDDDLSREAQHNATMLFKAQLR 959
[218][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 112 bits (281), Expect = 1e-23
Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT----TRDM 170
V Y GT+RNS ++Q YGEDGM RIEGQ +K A ++ + D T
Sbjct: 871 VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNGTAMR 930
Query: 171 PPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
+ L+ + + +D A+ +E Q+K+D +LR + NG++KVN+P+ L+RLIW
Sbjct: 931 LKNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIW 989
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
N+Q F K + T L +VI +++L +RL+VV G D LS EAQ NAT++F +R
Sbjct: 990 NSQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1047
[219][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
SB341 RepID=Q6E225_9PELO
Length = 622
Score = 112 bits (281), Expect = 1e-23
Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +R+D +
Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPTNAVFEKDFRLDLADERTLKS 141
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
E L+ P + + E Q++ED R+LR ++ GD KV +P NL RLIWNAQ
Sbjct: 142 CYEEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQ 200
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F +P T L VI VRE+ ++L++V GSD +S +AQ NAT++ + L+R
Sbjct: 201 KIFKVDLRKP--TNLSPLHVIEGVREVSKKLIIVSGSDDISKQAQYNATLLMNILLR 255
[220][TOP]
>UniRef100_Q5EM00 RNA polymerase II largest subunit (Fragment) n=1 Tax=Grifola
sordulenta RepID=Q5EM00_9AGAR
Length = 259
Score = 112 bits (281), Expect = 1e-23
Identities = 74/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS GD++QF+YGEDGMD IE Q E + A+ + YR+D T D +
Sbjct: 35 VCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALNNAQFEHDYRVDVT-DPSGGF 93
Query: 183 LSAEEYEALRTDPAVEQAMRD-EMAQIKEDLRVLREEVL--TNGDEKVNIPLNLARLIWN 353
L L QA D E AQ+ ED R+LRE + T+ +P+NL R++ N
Sbjct: 94 LPGVLQVGLDDSSVELQAKLDEEFAQLSEDRRLLREFIFPRTDPSSPRYLPVNLQRIVQN 153
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A F+ +P + L+ +I VRELC RLVVV G LS E Q NAT++F +R
Sbjct: 154 AMQIFHIDRRKP--SDLEPGYIIDSVRELCSRLVVVRGESPLSQEGQENATLLFRMHIR 210
[221][TOP]
>UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis
RepID=Q2PYS8_9FUNG
Length = 809
Score = 112 bits (281), Expect = 1e-23
Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM---P 173
++Y GTVRN+ G+++QF YGEDGMDAV+IE Q + ++ + K + Y++D M
Sbjct: 586 IKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVDFLNPMYGIS 645
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
+ L E E + P + A+ E Q+ ED VLR E+ +GD +PLN+ R+IWN
Sbjct: 646 ENVLQKEIIEEILATPVMLIALDKEYRQLTEDRNVLR-EIFKSGDSSWPLPLNIKRMIWN 704
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQ+ F +P + L ++ V++ C++L D LS E RNAT++F L+R
Sbjct: 705 AQSLFKIDFRKP--SDLHPIKIYKDVKDFCDKLNKNSEKDSLS-EQDRNATMLFQILIR 760
[222][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 112 bits (281), Expect = 1e-23
Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
RY GTVRNS GDVVQFLYGEDG+DA+ IE Q L A YR+D PP+W
Sbjct: 863 RYDGTVRNSLGDVVQFLYGEDGLDAMCIEKQKLGILNMSNAAFKAKYRLDLAN--PPEWF 920
Query: 186 SAE-EYEALRTDPAVEQAMRD-EMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNA 356
++ E+ T A+ D E + +D RV+R+ +E + +PLN+ R+I +A
Sbjct: 921 KSDYEFGNELTGDRPSMALLDTEWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESA 980
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+ FN K + + L+ +VI V+ L + + +V G+D +SVEA NATI+F L+R
Sbjct: 981 KRVFNVKAN--DRSNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADANATILFKGLLR 1036
[223][TOP]
>UniRef100_A9Q9R9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria lecideoides
RepID=A9Q9R9_9EURO
Length = 977
Score = 112 bits (281), Expect = 1e-23
Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSNEAFEKQFRVDLMEPKKLVW 823
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ +D + LR ++ T+ DE + +P+N+ R++
Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYDQLVDDRQFLRSIKKAATSADEMMPLPMNVVRILNQ 883
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 884 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940
[224][TOP]
>UniRef100_A9Q9N8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium sp. AFTOL
2237 RepID=A9Q9N8_9EURO
Length = 978
Score = 112 bits (281), Expect = 1e-23
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 766 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 825
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR + T+ DE + +P+N+ R++
Sbjct: 826 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRSFLRYINKAATSSDEMMPLPMNVVRILNQ 885
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R
Sbjct: 886 AQTTF--KIQSGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 942
[225][TOP]
>UniRef100_A9Q9N6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium arboreum
RepID=A9Q9N6_9EURO
Length = 989
Score = 112 bits (281), Expect = 1e-23
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++
Sbjct: 835 HDRLEQASEIHGDIDVQKLFDEEYEQLAEDRRFLRYINKAATSSDEMMMLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQT F K + L VI KV++L RLV+V G+D +S+EAQ NAT++ + +R
Sbjct: 895 AQTTF--KIQSGATSDLHPSYVIPKVKQLLGRLVIVRGNDKISLEAQDNATLLIKAQLR 951
[226][TOP]
>UniRef100_A5H297 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoria polycarpa
RepID=A5H297_9LECA
Length = 1020
Score = 112 bits (281), Expect = 1e-23
Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GDVVQFLYGEDG+DAV IE Q + +K + ++ R+D P +
Sbjct: 791 KYDGTVRNSLGDVVQFLYGEDGLDAVHIESQPVDIVKCSNGQFERKCRVDLMDPRPETSI 850
Query: 186 SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
+E E + D V+ + +E Q+++ LRE D+ +PLN+ R++ NA
Sbjct: 851 PSELLECSKEIAGDLDVQGHLDEEYEQLQKAREFLRE---GKTDDSAYLPLNIIRILENA 907
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+ F K + L EVI +V EL +RLV+V G D LS EAQ NAT++F + +R
Sbjct: 908 KAAF--KIRNNARSNLHPAEVIPQVNELLDRLVIVRGDDPLSQEAQHNATLLFKAQLR 963
[227][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 112 bits (280), Expect = 2e-23
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G ++Q YGEDG+ +E Q +K +K YR D T +
Sbjct: 863 VNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERTLRR 922
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ E+ + L +V Q + E Q+ D LR ++ NGD KV +P NL R+IWN Q
Sbjct: 923 IFNEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQ 981
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ P T L +VI VR+L +R V+V G+D LS +A NAT++F LVR
Sbjct: 982 KIFHINKRSP--TDLSPLKVIQGVRDLLQRCVIVAGTDRLSKQANENATLLFQCLVR 1036
[228][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 112 bits (280), Expect = 2e-23
Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D + +
Sbjct: 938 VNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEKSLRK 997
Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
L E L+ + + E Q++ED R+LR ++ GD K+ +P NL R+IWNAQ
Sbjct: 998 LYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQ 1056
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F + +P T L VI V+EL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 1057 KIFRVELRKP--TDLNPLRVIEGVKELSKKLVIVSGEDRISKQAQYNATLLMNILLR 1111
[229][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 112 bits (280), Expect = 2e-23
Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GD+VQFLYGEDG+D IE Q + +K + +R+ D R +
Sbjct: 872 VKYDGTVRNSLGDIVQFLYGEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLS 931
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
PD L E+ + D V++ + +E Q+ +D LR V+ DE + +P+N+ R++ +
Sbjct: 932 PDIL--EQATEIAGDIEVQKHLDEEWEQLLKDRAFLR-TVVKEDDEMMQLPINIQRILES 988
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + + L EV+ +VR+L +RL+VV G D LS EAQ NAT++F + +R
Sbjct: 989 AKTTFRIRDGT--ISDLHPAEVVPQVRQLLDRLLVVRGDDPLSREAQENATLLFKAQLR 1045
[230][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 112 bits (280), Expect = 2e-23
Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
V+Y GTVRNS GD++QF+YGEDG+D IE Q +++K AKL + +R+D R +
Sbjct: 866 VKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVDHIKCSDAKLLERFRVDVMDPERTLG 925
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P+ L E+ + D V++ +E I +D LR V+ +E + +P+N+ R++
Sbjct: 926 PEIL--EQANEIAGDIEVQRYFDEEWEAILKDREFLR-TVVKEDEEMMQLPINVQRILEM 982
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + + L EVI +V++L +RLV+V G+D +S EAQ NAT++F + +R
Sbjct: 983 ARTTFRIR--EGTISDLHPAEVIPQVQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLR 1039
[231][TOP]
>UniRef100_A9X969 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porpidia speirea
RepID=A9X969_9LECA
Length = 615
Score = 112 bits (280), Expect = 2e-23
Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + +K +R+D P
Sbjct: 392 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEKKFRVDLMDPRPEASI 451
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + + V+ + +E Q++ LR+ + +E++ +P+N+ R+I
Sbjct: 452 SPDYL--EQANEIAGNLKVQTFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 508
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L EVI +VR+L ERLVVV G D LS EAQ NAT++F + +R
Sbjct: 509 TAKTTFKIK--NGARSNLHPAEVIPQVRDLLERLVVVRGDDELSKEAQHNATLLFKAQLR 566
[232][TOP]
>UniRef100_A9Q9P5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
diffractella RepID=A9Q9P5_9EURO
Length = 999
Score = 112 bits (280), Expect = 2e-23
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L RLV+V G D +S+ AQ NAT++ +L+R
Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLGRLVIVRGDDPISLGAQNNATLLIKALLR 951
[233][TOP]
>UniRef100_A9Q9N4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lacinulatum
RepID=A9Q9N4_9EURO
Length = 989
Score = 112 bits (280), Expect = 2e-23
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D M P
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDL---MEPKK 831
Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARL 344
L E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R+
Sbjct: 832 LVRHDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSADEMMPLPMNVVRI 891
Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
+ A+T F + P + L VI KV++L ERL +V G D +S+EAQ NAT++ +
Sbjct: 892 LNQARTTFKIQSGGP--SDLHPSYVIPKVKQLLERLTIVRGDDSISLEAQENATLLIKAQ 949
Query: 525 VR 530
+R
Sbjct: 950 LR 951
[234][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 112 bits (279), Expect = 2e-23
Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD---MP 173
V Y GT+RNS ++Q YGEDGM RIEGQ +K A ++ + D +
Sbjct: 871 VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNAFLRL 930
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
+ L+ + + +D A+ +E Q+K+D +LR + NG++KVN+P+ L+RLIWN
Sbjct: 931 KNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIWN 989
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+Q F K + T L +VI +++L +RL+VV G D LS EAQ NAT++F +R
Sbjct: 990 SQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1046
[235][TOP]
>UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii
RepID=C3U0B8_9EURO
Length = 618
Score = 112 bits (279), Expect = 2e-23
Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GD+VQFLYGEDG+D IE Q + ++ + K YRI D +
Sbjct: 397 VKYDGTVRNSLGDIVQFLYGEDGLDGQHIENQRVDVIRCSDEQFRKRYRIDLMDPESTLS 456
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
PD L E+ + D V++ + +E Q+ D + LR V +EK+ +P+N+ R++ +
Sbjct: 457 PDIL--EQAGEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLPINVQRILES 513
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + + L EVI +V+ L +RL+VV G D +S EAQ NAT++F + +R
Sbjct: 514 AKTAFRIRDGT--ISDLHPAEVIPQVQALLDRLLVVRGDDPISKEAQDNATLLFKAQLR 570
[236][TOP]
>UniRef100_C3U0B7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eremascus albus
RepID=C3U0B7_9EURO
Length = 994
Score = 112 bits (279), Expect = 2e-23
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GDVVQFLYGEDG+D IE Q + +K AK YR+ D R +
Sbjct: 773 VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDVIKCSDAKFRDRYRVDLMDPERTIS 832
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
PD L E+ + D V++ + +E Q+++D LR +E + +P+N+ R++ +
Sbjct: 833 PDLL--EQANEITGDIEVQRYLDEEWEQLQKDRAFLR-SATKEDEEMMQLPINIQRILES 889
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A K + + L EVI + R+L +RLVVV G D +S EAQ +AT++F + +R
Sbjct: 890 A--KSTVRIREGAISDLHPAEVIPQTRDLLDRLVVVRGDDTISREAQESATMLFKAQLR 946
[237][TOP]
>UniRef100_C3U0B4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ascosphaera colubrina
RepID=C3U0B4_9EURO
Length = 963
Score = 112 bits (279), Expect = 2e-23
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GDVVQF+YGEDG+D IE Q + + K + +R+ D +P
Sbjct: 768 VKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDVITCSDEKFRQRFRVDFMDPDYTIP 827
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
PD L E + + D ++ + +E Q+++D LR V +E + +P+N+ R++
Sbjct: 828 PDLL--EHGKEIADDIEAQKYLDEEWEQLQKDRNFLR-TVCKEDEEMMQLPINVQRILET 884
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + + L EVI +VREL +RLV+V G D +S EAQ +AT++F +R
Sbjct: 885 AKTTFRIREGTV--SDLHPSEVIPQVRELLDRLVIVRGDDSISREAQESATLLFMCQLR 941
[238][TOP]
>UniRef100_A9Q9Q1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens
RepID=A9Q9Q1_9EURO
Length = 999
Score = 112 bits (279), Expect = 2e-23
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI K+++L ERL++V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 951
[239][TOP]
>UniRef100_A9Q9Q0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens
RepID=A9Q9Q0_9EURO
Length = 977
Score = 112 bits (279), Expect = 2e-23
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 764 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 823
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++
Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 883
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI K+++L ERL++V G D +S+EAQ NAT++ + +R
Sbjct: 884 ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 940
[240][TOP]
>UniRef100_A9Q9M9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis
cartilaginea RepID=A9Q9M9_9EURO
Length = 989
Score = 112 bits (279), Expect = 2e-23
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + ++ +R+D W
Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDIAFEQQFRVDLMEPTKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR ++ T DE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRGFLRYIKQAATTSDEMMPLPMNILRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F + P + L VI KV++L +RL+VV G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 951
[241][TOP]
>UniRef100_A5H276 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cetraria islandica
RepID=A5H276_9LECA
Length = 1003
Score = 112 bits (279), Expect = 2e-23
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P +
Sbjct: 786 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDIIACSTKQFERKFRVDLMDSKPETSI 845
Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
S E E D ++ + DE Q+++D LR+ + E + +PLN+ R++ A
Sbjct: 846 SPEFLEQANEMIGDVETQKHLDDEYRQLEKDRAELRKN-RQDDTENLQLPLNVIRILDTA 904
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K + L EVI +V++L +RLVVV G+D LS EAQ NAT++F +R
Sbjct: 905 KTTFKIK--NGARSNLHPAEVIPQVQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 960
[242][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 112 bits (279), Expect = 2e-23
Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
V+Y GTVRNS GDV+QF+YGEDG+D IE Q + +K KL + +R+ D R +
Sbjct: 872 VKYDGTVRNSLGDVIQFIYGEDGLDGGHIENQRVDIIKCSDEKLRERFRVDLMDPERSLG 931
Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
P+ L E+ + D V++ + +E Q+ +D LR V+ DE + +P+N+ R++
Sbjct: 932 PEVL--EQANEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLPINVQRILET 988
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A++ F + + L EV+ +V+ L +RL+VV G D +S EAQ NAT++F + +R
Sbjct: 989 ARSTFRIR--EGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEAQENATLLFKAQLR 1045
[243][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
RepID=A9QMP3_9BILA
Length = 406
Score = 111 bits (278), Expect = 3e-23
Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + +
Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 141
Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
+ + + L+ + + E Q++ED R+LR ++ NG+ K+ +P NL RL+WNAQ
Sbjct: 142 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 200
Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ + +P T L VI VREL ++L++V G + +S +AQ NAT++ + LVR
Sbjct: 201 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGENRISKQAQYNATLLMNILVR 255
[244][TOP]
>UniRef100_Q0PQ05 DNA-directed RNA polymerase (Fragment) n=1 Tax=Peltigera degenii
RepID=Q0PQ05_9LECA
Length = 1011
Score = 111 bits (278), Expect = 3e-23
Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
+Y GTVRNS GD+VQF+YGEDG+D V IEGQ+ + + A+ ++ +R+D P
Sbjct: 780 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQLVDIITCSDARFERKFRVDLMDPRPETSI 839
Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
PD+L E+ + D ++ + +E ++ LR++ + E+V +P N+ R++
Sbjct: 840 SPDFL--EQANEMAGDLEIQGYLDEEYDHLQAARDFLRKD-KRDDLEQVYLPTNIIRILD 896
Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L EVI +V++L +RLV+V G D LS EAQ+NATI+F + +R
Sbjct: 897 TAKTTFKIKD--GARSNLHPAEVIPQVQDLLDRLVIVRGDDSLSREAQQNATILFKAQLR 954
[245][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 111 bits (278), Expect = 3e-23
Identities = 63/176 (35%), Positives = 99/176 (56%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
VRY GTVRN+ GD+VQF YGEDG+DA +E Q+F+ L+ +K YRID D
Sbjct: 856 VRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNVDFEKKYRIDLVEDKK--- 912
Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
+ ++ D A+++ + +E +Q+ D + R + NG+ + P+N+ R+I N+
Sbjct: 913 ICLHMENSIEGDVAMQELLDEEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQ 972
Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
F+ +P T L ++I VR L +L V G D ++ E Q NAT++F L+R
Sbjct: 973 IFHLDSKKP--TDLLPSDIIYGVRNLISKLSVFRGDDRITKEIQENATLLFQILLR 1026
[246][TOP]
>UniRef100_A9Q9T2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria tristis
RepID=A9Q9T2_9EURO
Length = 988
Score = 111 bits (278), Expect = 3e-23
Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 764 VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 823
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++
Sbjct: 824 QDRLEQASEIHGDVDVQKMFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 883
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K H + L VI KV+ L +RL++V G D +S+EAQ NAT++ + +R
Sbjct: 884 ARTTF--KIHSGSPSDLHPSYVIPKVKLLLDRLIIVRGDDRISLEAQENATLLIKAQLR 940
[247][TOP]
>UniRef100_A9Q9R6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
hochstetteri RepID=A9Q9R6_9EURO
Length = 999
Score = 111 bits (278), Expect = 3e-23
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI K+++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[248][TOP]
>UniRef100_A9Q9R5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
hochstetteri RepID=A9Q9R5_9EURO
Length = 999
Score = 111 bits (278), Expect = 3e-23
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++
Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
A+T F K + L VI K+++L +RLV+V G D +S+EAQ NAT++ + +R
Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951
[249][TOP]
>UniRef100_A9Q9N7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium
squamulosum RepID=A9Q9N7_9EURO
Length = 612
Score = 111 bits (278), Expect = 3e-23
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W
Sbjct: 398 VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 457
Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++
Sbjct: 458 HDRLEQASEIHGDIDVQKLFDEEYEQLVEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 517
Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R
Sbjct: 518 AQTTF--KIQTGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 574
[250][TOP]
>UniRef100_A7J590 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coccocarpia
erythroxyli RepID=A7J590_9LECA
Length = 997
Score = 111 bits (278), Expect = 3e-23
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Frame = +3
Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
+Y GTVRNS GD+VQF+YGEDG+DAV +E Q + + + ++ +R+D P +
Sbjct: 766 KYDGTVRNSLGDIVQFVYGEDGIDAVHVEEQRVDIILSSDEQFERKFRVDLMDPRPEISI 825
Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
S+E E D V+ + +E Q++ +LR +V +G + + +P+N+ R++ A
Sbjct: 826 SSEYLEQANEIVGDLEVQAYLDEEYEQLQAARDMLR-KVKQDGTDLLQLPINIVRILDTA 884
Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
+T F K + L EVI +VREL +RL+VV G D LS E+Q NAT++F + +R
Sbjct: 885 KTTFKIK--NGTRSNLHPAEVIPQVRELLDRLIVVRGDDDLSKESQHNATLLFKAQLR 940