AV626675 ( LCL013e04_r )

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[1][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score =  363 bits (932), Expect = 4e-99
 Identities = 178/178 (100%), Positives = 178/178 (100%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW
Sbjct: 864  VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 923

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
            LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT
Sbjct: 924  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 983

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 536
            KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH
Sbjct: 984  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 1041

[2][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
            50319 RepID=Q8MX26_9EUKA
          Length = 1014

 Score =  149 bits (377), Expect = 9e-35
 Identities = 75/176 (42%), Positives = 116/176 (65%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            ++Y  TVRNS GD++QF YGEDGMD V IE Q  + LK D A+  K Y++D +R    D+
Sbjct: 784  IKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLKTYQLDVSRPEQLDF 843

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
            + AE  E L   P    A+  E+ Q+++D ++LR+++   G++ V++P+NL RLIWNAQ 
Sbjct: 844  MDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQK 903

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +F+    R   + ++ ++VI  V+ L ERL+VV G+D LS++AQ NAT +F  ++R
Sbjct: 904  RFHV--DRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTNATTLFKIMLR 957

[3][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
            aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score =  141 bits (355), Expect = 3e-32
 Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173
            VRY GT+R+S G V+QF YGEDGMD  ++E Q  E L    AK +KAYR+D T     + 
Sbjct: 791  VRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMSDAKFEKAYRVDLTGGQYGLK 850

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P  L     E L +D   +  +  E  Q+++D   LR  +  +G     +P+NL RLIWN
Sbjct: 851  PGVLDFRTQENLLSDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWN 910

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ +F   P +P  T L    +   V +L ++LVVV G+D LSVEAQ+NAT++F  LVR
Sbjct: 911  AQNQFEVGPRKP--TDLHPLHITESVEQLLDKLVVVRGNDPLSVEAQKNATLLFQILVR 967

[4][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
           RepID=Q1ACV3_ACEPM
          Length = 240

 Score =  140 bits (352), Expect = 8e-32
 Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q+ + LK   +  +K +R +  +D   P+
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQILDSLKIKKSDFNKTFRFEMDQDNWNPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  + L+T   +      E+ +++ D   L  E+ T+GD    +P+NL RLIWNAQ
Sbjct: 80  YMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F   P RP  + +   EV+  + +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDPRRP--SDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILLR 194

[5][TOP]
>UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata
            RepID=Q71ET5_NYMOD
          Length = 1013

 Score =  139 bits (351), Expect = 1e-31
 Identities = 76/177 (42%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK ++ +    +  P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFKFEFDDENWDPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +L  +  E L+T   ++     E+ +++ D R L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 850  YLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDAMSMEAQKNATLFFNILLR 964

[6][TOP]
>UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale
            RepID=B7SNX2_PAPOR
          Length = 1010

 Score =  139 bits (350), Expect = 1e-31
 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + DK YR +   D   P+
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPN 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++ ++  E L+           E+ ++ +D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 847  YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 907  KTFKVDPRRP--SDMHPMEIVEAIDKLQERLKVVPGDDSMSMEAQKNATLFFNILLR 961

[7][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  138 bits (348), Expect = 2e-31
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q  + LK   A+ D  +R +    +  P+
Sbjct: 869  VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +LS +  E L+T   +      E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 989  KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043

[8][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  138 bits (348), Expect = 2e-31
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q  + LK   A+ D  +R +    +  P+
Sbjct: 816  VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 875

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +LS +  E L+T   +      E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 876  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 936  KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 990

[9][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  138 bits (348), Expect = 2e-31
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q  + LK   A+ D  +R +    +  P+
Sbjct: 869  VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +LS +  E L+T   +      E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 989  KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043

[10][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  138 bits (348), Expect = 2e-31
 Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   A+ ++ YR +  R D  PD
Sbjct: 871  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYRFEIDRDDWAPD 930

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++SAE  E ++T   +      E+++++ D R +  E+   G+    +P+NL RLIWNAQ
Sbjct: 931  YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +   + +   E++  V  L ERL VV G+D +S+EAQRNAT+ F  L+R
Sbjct: 991  KIFKVDLRKS--SDMHPMEIVEAVENLQERLRVVPGNDQISMEAQRNATLFFGCLLR 1045

[11][TOP]
>UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri
            RepID=B7SNW8_DRIWI
          Length = 1010

 Score =  137 bits (345), Expect = 5e-31
 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   A+ D  +R +   D   P 
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDNDNWNPS 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 847  YMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  +G+   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 907  KTFKVDLRRP--SGMHPMEIVEAVDKLQERLKVVPGDDPISMEAQKNATLFFNILLR 961

[12][TOP]
>UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
           RepID=Q1ACS7_9MAGN
          Length = 240

 Score =  136 bits (343), Expect = 8e-31
 Identities = 75/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK    + +K ++ +    +  P+
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFKYEIDDPNWNPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++ +E  E L+T          E+ +++ D   L  E+ T GD  + +P+NL RLIWNAQ
Sbjct: 80  YMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  + +L ERL VV G+D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGADSLSIEAQKNATLLFNILLR 194

[13][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
           tomentosa RepID=Q1ACT8_9MAGN
          Length = 240

 Score =  136 bits (342), Expect = 1e-30
 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK    + +K +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFRYEIDDPNWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD  + +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  + +L ERL VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEAQKNATLLFNILLR 194

[14][TOP]
>UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis
            RepID=B7SNW5_ASPOF
          Length = 1009

 Score =  136 bits (342), Expect = 1e-30
 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  YR +       P 
Sbjct: 786  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFNNVYRYEIDDNQWDPS 845

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T P        E+ +++ D   L  ++ T GD    +P+NL RLIWNAQ
Sbjct: 846  YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P RP  + +   E++  V +L E+L VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 906  KTFKVDPRRP--SDMHPMEIVEAVDKLQEKLRVVPGDDFLSMEAQKNATLLFNILLR 960

[15][TOP]
>UniRef100_A1YIB8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gigaspora gigantea
            RepID=A1YIB8_9GLOM
          Length = 1039

 Score =  135 bits (341), Expect = 1e-30
 Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 14/190 (7%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRNS GD+VQF YGEDGMDA  +E Q F+ L  + A+ D  Y I+   D     
Sbjct: 801  VKYDGTVRNSLGDIVQFCYGEDGMDACFVEPQTFDTLPMNNAEFDNKYLIELKDDE---- 856

Query: 183  LSAEEYEALRTDPA--------------VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVN 320
               +E EA + D                + + + +E  Q+K D  +L+ ++ TNGD K  
Sbjct: 857  -KNKEKEAGQQDDTDLVQPKKPKTQQEIIREKIVEEYVQLKRDREMLQRDIFTNGDNKWP 915

Query: 321  IPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRN 500
            +P+N+ RLI NAQ KFN +P R   T LQ  +VI  V E+  RLVVV G+D +S EAQ N
Sbjct: 916  LPVNIKRLIKNAQQKFNIRPSRWTTTDLQYIDVINSVEEVMSRLVVVKGNDQISHEAQTN 975

Query: 501  ATIMFHSLVR 530
            AT +F  L+R
Sbjct: 976  ATTLFKILLR 985

[16][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7R1R2_VITVI
          Length = 429

 Score =  135 bits (340), Expect = 2e-30
 Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK    + D+A+R +    +  P+
Sbjct: 125 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 184

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ + GD   ++P+NL RLIWNAQ
Sbjct: 185 YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 244

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + + + E++  V +L ERL VV G D +S+EAQ+NAT++F+ L+R
Sbjct: 245 KTFKIDLRRP--SDMHLMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 299

[17][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  135 bits (339), Expect = 2e-30
 Identities = 73/177 (41%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           ++Y GTVRNS GDV+QFLYGEDGMDA+ IE Q  + LK    + D+ +R +    +  P+
Sbjct: 60  LKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPN 119

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ +NGD  + +P+NL RLIWNAQ
Sbjct: 120 YMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQ 179

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  + +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 180 KTFKVDFRRP--SDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLR 234

[18][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
            RepID=Q71ET4_AMBTC
          Length = 1013

 Score =  134 bits (338), Expect = 3e-30
 Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   A+ +  Y+ +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KMFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[19][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
            macrophyllus RepID=Q2TUN7_9CONI
          Length = 1013

 Score =  134 bits (338), Expect = 3e-30
 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  Y+ +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEVDQENWNPI 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     E+ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P +P  + +   E++  +  L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDPRKP--SDMHPMEIVEAIDRLQERLKVVPGDDLISIEAQKNATLFFNILLR 964

[20][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
            RepID=Q2TUN8_TAXCA
          Length = 1013

 Score =  134 bits (337), Expect = 4e-30
 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  YR +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYRYEIDQENWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T    +     E+ +++ D R L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P +   + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[21][TOP]
>UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus
           sempervirens RepID=Q1ACU8_BUXSE
          Length = 240

 Score =  134 bits (337), Expect = 4e-30
 Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   A  DK +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEDQKLDSLKMKKADFDKVFRYEIDDENWSPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194

[22][TOP]
>UniRef100_B7SNX5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Saruma henryi
            RepID=B7SNX5_SARHE
          Length = 1009

 Score =  134 bits (337), Expect = 4e-30
 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   A+ DK +R +    +  P 
Sbjct: 786  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFRYEFDDANWNPS 845

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 846  YMLPEHVEDLKTIREFRSVFDAEVQKLEADRYQLGTEITTTGDNSWPMPVNLKRLIWNAQ 905

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 906  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDLMSMEAQKNATLFFNILLR 960

[23][TOP]
>UniRef100_A1YIC1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Blastocladiella
            emersonii RepID=A1YIC1_BLAEM
          Length = 1005

 Score =  134 bits (337), Expect = 4e-30
 Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRN+QG+++QF YGEDGMD  R+E Q+ E L+   AK D+ YRID T       
Sbjct: 775  VKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFDRRYRIDVTDVGGSSG 834

Query: 183  L--SAEEYEALR--TDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
            L     E+   R      V++ +  E  Q+  D R L +++   GD +  +P NL R+IW
Sbjct: 835  LRPGTVEFGIQREMQSAEVQELLNAEYEQLLRDRRDL-QQIFPRGDARWPLPCNLNRIIW 893

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            NAQ  F     +P  + L    V+ KVR LC+ LVV+ G+D +SVEAQRNAT++  +LVR
Sbjct: 894  NAQNLFKIDKSKP--SNLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATLLMQALVR 951

[24][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
            RepID=Q71ET8_WELMI
          Length = 1013

 Score =  133 bits (335), Expect = 7e-30
 Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV QFLYGEDGMDAV IE Q  + LK    + D  Y+ +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFDDVYKYELDQENWNPG 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     E+  ++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P +   + +   E+I  + +L ERL VV G+D LS+EAQ+NAT+ F+ L+R
Sbjct: 910  KLFKIDPRKA--SDMHPMEIIDAIDKLQERLKVVPGNDPLSIEAQKNATLFFNILLR 964

[25][TOP]
>UniRef100_Q1L5Z5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhododendron
           macrophyllum RepID=Q1L5Z5_RHOMC
          Length = 589

 Score =  133 bits (335), Expect = 7e-30
 Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  P 
Sbjct: 377 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEFDKKFRYEIDDGNWNPS 436

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++ AE  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 437 YMLAEHVEDLKTIREFRNVFDAEVQKLEADRLQLGTEIATTGDNNWPMPVNLGRLIWNAQ 496

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT  F+ L+R
Sbjct: 497 KTFKIDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSMEAQKNATTFFNILLR 551

[26][TOP]
>UniRef100_Q1ACV0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
           beckleri RepID=Q1ACV0_9MAGN
          Length = 240

 Score =  133 bits (335), Expect = 7e-30
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   +  ++ +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEFQKLDSLKMKKSDFBRVFRYEIGDENWNPT 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T P        E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  FMLPEHVEGLKTIPEFGNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194

[27][TOP]
>UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus
           tuberosa RepID=Q1ACU7_9MAGN
          Length = 240

 Score =  133 bits (335), Expect = 7e-30
 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   A+ D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D +SVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISVEAQKNATLFFNILLR 194

[28][TOP]
>UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo
           nucifera RepID=Q1ACT3_NELNU
          Length = 240

 Score =  133 bits (335), Expect = 7e-30
 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[29][TOP]
>UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
           RepID=Q1ACS8_9MAGN
          Length = 240

 Score =  133 bits (334), Expect = 9e-30
 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK    +  K ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFKKVFKYEIDDPNWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD  + +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  + +L E+L VV G D LS+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQEKLKVVPGEDSLSIEAQKNATLLFNILLR 194

[30][TOP]
>UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
            RepID=Q71ET7_MAIZE
          Length = 1009

 Score =  132 bits (333), Expect = 1e-29
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P+
Sbjct: 786  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPN 845

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 846  YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 906  KTFKIDFRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 960

[31][TOP]
>UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera
           chilensis RepID=Q1ACU4_GUNCH
          Length = 240

 Score =  132 bits (333), Expect = 1e-29
 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   A+ DK ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194

[32][TOP]
>UniRef100_Q1ACT5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus
           orientalis RepID=Q1ACT5_PLAOI
          Length = 240

 Score =  132 bits (333), Expect = 1e-29
 Identities = 77/177 (43%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V  L ERL VV G D LS+EAQ+NAT+ F+ L R
Sbjct: 140 KTFXVDLRRP--SDMHPMEIVEAVDXLQERLXVVPGDDFLSMEAQKNATLFFNILXR 194

[33][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
           RepID=O04144_9VIRI
          Length = 613

 Score =  132 bits (333), Expect = 1e-29
 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q    +K + +  D  YR +  + D  PD
Sbjct: 378 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKSTFDATYRYEIDQEDWSPD 437

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  +  +  +      Q M  E+ Q+++D R L  E+   GD    +P+N+ RLIWNAQ
Sbjct: 438 YMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQ 497

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     +P  + +   +V+  + +L ERL VV+G D +S EAQ+NAT+ F+ L+R
Sbjct: 498 KIFKIDLRKP--SDMNPMDVVDGMDKLQERLKVVVGDDHISREAQKNATLFFNCLLR 552

[34][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  132 bits (333), Expect = 1e-29
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P+
Sbjct: 539  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 598

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 599  YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 658

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 659  KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 713

[35][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  132 bits (333), Expect = 1e-29
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P+
Sbjct: 838  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 897

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 898  YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 957

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 958  KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 1012

[36][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
            RepID=B7SNX4_PEA
          Length = 1010

 Score =  132 bits (333), Expect = 1e-29
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK      D+A+R +    +  P 
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPT 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ ++  D   L  E+ T GD  + +P+NL RLIWNAQ
Sbjct: 847  YMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  + +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 907  KTFKVDFRRP--SDMHPMEIVEAIDKLQERLRVVPGDDLLSQEAQKNATLLFNILLR 961

[37][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
            RepID=Q71ET3_PSINU
          Length = 1013

 Score =  132 bits (332), Expect = 2e-29
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV++FLYGEDGMDAV IE Q  + +K    + D+ Y  +  + +  PD
Sbjct: 790  VKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFEIDSENWNPD 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++ AE  E L+T          E+ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +P  + +   E++  V +L ERL VV G D +S EAQ+NAT+ F+ L+R
Sbjct: 910  KIFKVDFRKP--SDMHPMEIVEAVDKLQERLKVVPGEDEISKEAQKNATLFFNILLR 964

[38][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           scandens RepID=Q1ACU1_9MAGN
          Length = 240

 Score =  132 bits (332), Expect = 2e-29
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++ +E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[39][TOP]
>UniRef100_Q1ACT4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus
           orientalis RepID=Q1ACT4_PLAOI
          Length = 240

 Score =  132 bits (332), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GT RNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  P 
Sbjct: 20  VKYDGTFRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T    +     E+ +++ D   L  E+ T GD   ++P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFQNVFDAEVRKLEADRYQLGTEITTMGDNSWSMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V  L ERL VV G D LS+EAQ+NAT+ F+ L R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDNLQERLRVVPGDDFLSMEAQKNATLFFNILPR 194

[40][TOP]
>UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata
            RepID=Q71EU1_9SPER
          Length = 1013

 Score =  132 bits (331), Expect = 2e-29
 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  YR +    +  P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYEIDNENWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     E+ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +P  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[41][TOP]
>UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra
            RepID=Q71ET9_9CONI
          Length = 1013

 Score =  132 bits (331), Expect = 2e-29
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  Y+ +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYELDQENWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     E+ +++ D R L  E+  +GD    +P+NL RLIWN+Q
Sbjct: 850  YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLKRLIWNSQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  +  L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDARRP--SDMHPMEIVEAIDRLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[42][TOP]
>UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana
            RepID=Q71ET6_MAGSO
          Length = 1010

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P 
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 847  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961

[43][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
            RepID=Q2TUN9_THUOC
          Length = 1013

 Score =  132 bits (331), Expect = 2e-29
 Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  YR +  ++   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYEIDQENWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T    +     E+ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P +   + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLISIEAQKNATLFFNILLR 964

[44][TOP]
>UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
           corallina RepID=Q1ACU9_9MAGN
          Length = 240

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   +  D+ +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVGIEFQKLDSLKMKKSDFDRVFRYEIGDENWNPT 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFEVDLRRP--SDMHPTEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194

[45][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
           RepID=Q1ACS9_9CARY
          Length = 240

 Score =  132 bits (331), Expect = 2e-29
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  PD
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFRYEFDAENWEPD 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RL+WNAQ
Sbjct: 80  YMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKRLLWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F         + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194

[46][TOP]
>UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron
           sinense RepID=Q1ACS5_9MAGN
          Length = 240

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ DK +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ ++  D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194

[47][TOP]
>UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron
            tulipifera RepID=B7SNX0_LIRTU
          Length = 1010

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P 
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 847  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961

[48][TOP]
>UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum
            RepID=B7SNW7_CERDE
          Length = 1010

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P 
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 847  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 907  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961

[49][TOP]
>UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris
            RepID=B7SNW6_BETVU
          Length = 1012

 Score =  132 bits (331), Expect = 2e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P 
Sbjct: 789  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 848

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 849  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 908

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 909  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 963

[50][TOP]
>UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
            stegomyiae RepID=A1YIC2_9FUNG
          Length = 1014

 Score =  132 bits (331), Expect = 2e-29
 Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-----TRD 167
            V+Y GTVRN+QG+++QF+YGEDGMDA+++E Q  + L+ + ++ +  YRID         
Sbjct: 784  VKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFESKYRIDVMDIEGKAG 843

Query: 168  MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
            +PP  +     + +++   V++ + +E +Q+K+D   LR+  LT GD    +P+NL R+I
Sbjct: 844  LPPGCVEFGIQQEMQSID-VQKLLDEEFSQLKDDRACLRKIFLT-GDANWPLPMNLKRII 901

Query: 348  WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
            WNAQ  F     RP  + L    V+ +VR LC++L V+ G D +S+EAQ+NAT++   L+
Sbjct: 902  WNAQNLFKIDKQRP--SNLHPDYVVNQVRGLCDKLTVIRGDDKISLEAQKNATLLTQILI 959

Query: 528  R 530
            R
Sbjct: 960  R 960

[51][TOP]
>UniRef100_A1YIC0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catenaria anguillulae
            RepID=A1YIC0_9FUNG
          Length = 1020

 Score =  132 bits (331), Expect = 2e-29
 Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRN+QG+++QFLYGEDGMD  R+E Q+ E L+   +K +  +R+D T    P  
Sbjct: 790  VKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSKFETRFRVDVTEPDTPRG 849

Query: 183  LSAEEYE-----ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
            L +   E      ++T   V+  + DE  Q++ D R   ++V   GD +  +P NL R+I
Sbjct: 850  LRSASVEFGIMKEIQT-AEVQDLLDDEFRQLQVD-RAQLQQVFKRGDARWPLPGNLNRII 907

Query: 348  WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
            WNAQ  F     +P  + L  + ++  V+ LC +LVVV G+D LS EAQ+NAT++   LV
Sbjct: 908  WNAQNMFKLDKSKP--SNLHPEHIVASVKSLCTQLVVVPGTDKLSREAQKNATVLMQILV 965

Query: 528  R 530
            R
Sbjct: 966  R 966

[52][TOP]
>UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta
            RepID=Q71EU0_CYCRE
          Length = 1013

 Score =  131 bits (330), Expect = 3e-29
 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ +  YR +    +  P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYEIDNENWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T    +     ++ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +P  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[53][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  131 bits (330), Expect = 3e-29
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D  +R +    +  P+
Sbjct: 867  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPN 926

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 927  YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 986

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 987  KTFRIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLR 1041

[54][TOP]
>UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           aspera RepID=Q1ACU2_9MAGN
          Length = 240

 Score =  131 bits (329), Expect = 3e-29
 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[55][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
           coccinea RepID=Q1ACT1_9ROSI
          Length = 240

 Score =  131 bits (329), Expect = 3e-29
 Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  E LK   ++ +K +R +       PD
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLESLKMKKSEFNKTFRYEFDDEHWNPD 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     R   + +   E++  V +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KIFKIDNRR--HSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEAQKNATLFFNILLR 194

[56][TOP]
>UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
           piasezkii RepID=Q1ACS3_9MAGN
          Length = 240

 Score =  131 bits (329), Expect = 3e-29
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK    + D+A+R +    +  P+
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ + GD   ++P+NL RLIWNAQ
Sbjct: 80  YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     R   + +   E++  V +L ERL VV G D +S+EAQ+NAT++F+ L+R
Sbjct: 140 KTFKIDLRRS--SDMHPMEIVETVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 194

[57][TOP]
>UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia
           suffruticosa RepID=Q1ACU6_9MAGN
          Length = 240

 Score =  130 bits (328), Expect = 5e-29
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194

[58][TOP]
>UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           cuneiformis RepID=Q1ACU3_9MAGN
          Length = 240

 Score =  130 bits (328), Expect = 5e-29
 Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++ +E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RL+WNAQ
Sbjct: 80  YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLVWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[59][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  130 bits (328), Expect = 5e-29
 Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA  IE Q+ + L+    +    ++ID         
Sbjct: 864  VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQVLDTLRLGAKEFAAVFQIDPDVSGFNKG 923

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            WLS E+   L     V + +  E  ++++D RV   +V   GD  V++P+N+ R+IWNAQ
Sbjct: 924  WLSNEQASDLAHSTKVREIIDAEWERLQKD-RVELRKVFPTGDPHVHLPVNMKRIIWNAQ 982

Query: 360  TKFNCKPHRPGWT--GLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             ++    +RPG +   L V  VI  V EL  +L+VV G+D LS+EAQRN T++F + VR
Sbjct: 983  KQYGM--YRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVR 1039

[60][TOP]
>UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
            RepID=Q2TUN6_GINBI
          Length = 1013

 Score =  130 bits (327), Expect = 6e-29
 Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  Y+ +    +  P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEIDNENWNPG 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++ A+  E L+T          E+ +++ D R L  E+  +GD    +P+NL RLIWNAQ
Sbjct: 850  YMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +P  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964

[61][TOP]
>UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
           beckleri RepID=Q1ACV1_9MAGN
          Length = 240

 Score =  130 bits (327), Expect = 6e-29
 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   +  D+ +R +       P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRYFRYEIDDESWNPG 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[62][TOP]
>UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine
           herbstii RepID=Q1ACT9_IREHE
          Length = 240

 Score =  130 bits (327), Expect = 6e-29
 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + DK YR +   D   PD
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKLEFDKTYRYEFDADNWEPD 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  + L+T          E+ +++ D   L  ++ T GD    +P+NL RL+WNAQ
Sbjct: 80  YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F         + +   E++  V +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLR 194

[63][TOP]
>UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum
            RepID=B7SNW9_ILLPA
          Length = 1013

 Score =  130 bits (327), Expect = 6e-29
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + +  +R +   D   P 
Sbjct: 790  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVFRYEIDNDNWNPS 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 850  YMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 910  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 964

[64][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  129 bits (325), Expect = 1e-28
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D+ ++ +    +  P 
Sbjct: 868  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 927

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 928  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 987

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 988  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 1042

[65][TOP]
>UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon
           punctatum RepID=Q1ACV2_9MAGN
          Length = 240

 Score =  129 bits (325), Expect = 1e-28
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   +  D+ +R +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRVFRYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F      P  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRXP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194

[66][TOP]
>UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
           integrifolia RepID=Q1ACT6_MACIN
          Length = 240

 Score =  129 bits (325), Expect = 1e-28
 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ +  +R +    +  P+
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFNTVFRYEIDDENWNPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T G+    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS EAQ+NAT++F+ L+R
Sbjct: 140 KTFKLDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLR 194

[67][TOP]
>UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
           piasezkii RepID=Q1ACS4_9MAGN
          Length = 240

 Score =  129 bits (325), Expect = 1e-28
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D+ ++ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 194

[68][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  129 bits (325), Expect = 1e-28
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + D+ ++ +    +  P 
Sbjct: 105 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 164

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 165 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 224

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D +S+EAQ+NAT+ F+ L+R
Sbjct: 225 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 279

[69][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
           ampullaria RepID=Q1ACT2_9CARY
          Length = 240

 Score =  129 bits (324), Expect = 1e-28
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS G V+QFLYGEDGMD+V IE Q  E LK   ++ D  YR +    D  P+
Sbjct: 20  VKYDGTVRNSLGCVIQFLYGEDGMDSVWIESQKLESLKIKKSEFDMVYRYELNDEDWNPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  +  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     R   + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKIDLRRR--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194

[70][TOP]
>UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella
            verticillata RepID=Q2PYR5_9FUNG
          Length = 1016

 Score =  129 bits (324), Expect = 1e-28
 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 12/188 (6%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------R 164
            V+Y GTVRNS G V+QF YGEDGMDA  +E Q  + +K   A  +K YRID T      +
Sbjct: 782  VKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFEKKYRIDLTDKSKSFK 841

Query: 165  DMPPDW------LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIP 326
            +   D+        A+E  A R +P ++  +  E  Q+ ED  +LR  + T GD    +P
Sbjct: 842  NGTLDYNVFKQIAEADEEAAKRGEPDMQTLLEQEFKQLDEDRHLLRNYIFTEGDNSWPMP 901

Query: 327  LNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNAT 506
             N+ R IWN++  F+    RP  + L  + ++  ++ L ++LVVV G+D +SVEAQ NAT
Sbjct: 902  TNIRRYIWNSKQMFHVDHKRP--SDLDPRHILESIKNLEKQLVVVRGTDRISVEAQDNAT 959

Query: 507  IMFHSLVR 530
            ++F  L+R
Sbjct: 960  LLFRMLIR 967

[71][TOP]
>UniRef100_Q2PYQ8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Paraglomus occultum
            RepID=Q2PYQ8_9GLOM
          Length = 847

 Score =  129 bits (324), Expect = 1e-28
 Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR--DMPP 176
            V+Y GTVRNS GDV++F YGEDG D   +E Q  + L+   A  +K Y ID  +  D+ P
Sbjct: 621  VKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFEKKYYIDLRKDPDLNP 680

Query: 177  DWLSAEEYEALRTDPA--VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
              +    ++ +  D +   +Q +  E +++ ED ++LRE +  NGD K  +P+N+ RLI 
Sbjct: 681  SLVDPRVWDRISDDGSDKYQQHLDQEYSKLLEDRKILREFIFPNGDNKWPLPVNIKRLIK 740

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            N+Q  F  K H  G + +   E IT + +L ERL VV G D +S+EAQRN+T++F  L+R
Sbjct: 741  NSQQTF--KSHLRGGSDIDPIEAITDLNKLSERLKVVNGEDKISIEAQRNSTLLFQILLR 798

[72][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  129 bits (324), Expect = 1e-28
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 870  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPT 929

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +LS E  E L+    +      E ++++ D   L  E+ TNGD    +P+N+ R IWNAQ
Sbjct: 930  YLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQ 989

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +   + +   E++  V +L ERL+VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 990  KTFKIDLRK--ISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLR 1044

[73][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  129 bits (323), Expect = 2e-28
 Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   ++ D+ ++ +    +  P 
Sbjct: 868  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPT 927

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  +  + L+    +      E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 928  YMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQ 987

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E +  V +L ERL VV G D LSVEAQ+NAT+ F  L+R
Sbjct: 988  KTFKVDKRRP--SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLR 1042

[74][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=Q2PYS1_9FUNG
          Length = 1015

 Score =  129 bits (323), Expect = 2e-28
 Identities = 70/179 (39%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
            V+Y GTVRNS G+++QF YGEDGMD   +E Q  + ++    K +K+Y++D     +   
Sbjct: 790  VKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEKFEKSYKVDVMDKEKGFK 849

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P  L     + +  + + +  + +E  Q+ +D RVLRE + T+GD+   +P NL RL+WN
Sbjct: 850  PGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWN 909

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+    +P  + L   ++I  V+ L +RLVVV GSD LS EAQ NAT+++  L+R
Sbjct: 910  AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEAQLNATLLYQCLLR 966

[75][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
            RepID=A1YIB9_ALLMA
          Length = 1008

 Score =  129 bits (323), Expect = 2e-28
 Identities = 71/181 (39%), Positives = 112/181 (61%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT-----RD 167
            V+Y GTVRN+QG ++QF YGEDGMD  R+E Q+ E L+ +  + ++ YRID T     + 
Sbjct: 778  VKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFERRYRIDLTDPEGKKG 837

Query: 168  MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
            + P  +     + +++   V+Q +  E  Q++ED   LR  +   GD +  +P N+ R+I
Sbjct: 838  LKPGSVEFGIQQEMQS-IEVQQLLDQEYRQLEEDRERLR-HIFPRGDARWPLPGNIQRII 895

Query: 348  WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
            WNAQ  F     +P  + L  + V+ +VR+LC++L+V+ G+D +SVEAQRNAT++   LV
Sbjct: 896  WNAQNLFKIDKTKP--SNLHPEYVVNEVRKLCDKLMVIPGTDKISVEAQRNATLLSQILV 953

Query: 528  R 530
            R
Sbjct: 954  R 954

[76][TOP]
>UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana
            RepID=B7SNX3_PERAE
          Length = 1009

 Score =  128 bits (322), Expect = 2e-28
 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK    +    YR +    +  P 
Sbjct: 786  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFLNVYRYEIDNENWNPG 845

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 846  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 905

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 906  KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 960

[77][TOP]
>UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio
           picticaulis RepID=Q1ACS6_9ASTR
          Length = 240

 Score =  128 bits (321), Expect = 3e-28
 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + ++ Y+ +    +  P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKIKRREFNRLYKYELDDENWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  +  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLR 194

[78][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
           muscipula RepID=Q1ACU5_DIOMU
          Length = 240

 Score =  127 bits (320), Expect = 4e-28
 Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS G V+QFLYGEDGMDAV IE Q  + LK   ++  KAYR +    +  P 
Sbjct: 20  VKYDGTVRNSLGCVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFLKAYRFEYDDPNWNPK 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  +  E L++ P        E+++++ D  +L  ++ T GD    +P+NLARLI NAQ
Sbjct: 80  YIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F  K    G + L   E++  V +L ERL VV G D LS EAQRNAT+ F+ L+R
Sbjct: 140 KLF--KIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDDHLSDEAQRNATLFFNILLR 194

[79][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  127 bits (320), Expect = 4e-28
 Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA  +E Q  + L+ D  K  + + +D    +    
Sbjct: 848  VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFKRTFHLDPDEPNFGKG 907

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            W+S  +   L         +  E  Q+K D R    +V+T GD  V++P+NL R++WNAQ
Sbjct: 908  WMSEAQANDLANSVEKRALLEAEWEQLKLD-RAELHKVMTTGDPSVHLPVNLKRIVWNAQ 966

Query: 360  TKFNC--KPHRPG--WTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
              +        PG     LQ   VI  VR +   L VV G D LS+EAQRN+TI+F +LV
Sbjct: 967  KNYGLVKDTSAPGRERDELQAVNVIESVRSMLNGLTVVPGGDELSLEAQRNSTILFFALV 1026

Query: 528  R 530
            R
Sbjct: 1027 R 1027

[80][TOP]
>UniRef100_A1YIB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mucor hiemalis
            RepID=A1YIB5_9FUNG
          Length = 1009

 Score =  127 bits (320), Expect = 4e-28
 Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
            V+Y GTVRNS GD+++F YGEDGMDA+ +E Q F  LK +  + +K Y+ID   +     
Sbjct: 781  VKYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFEKRYKIDVMNKGFKKG 840

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
             LS    +++      +  +  E  Q+ ED   LR  +  NGD+K  +P+NL RLI N+Q
Sbjct: 841  ALSYNVLKSIEGSETAQAYLDHEFYQLTEDRNKLRTNIFKNGDDKWPLPVNLTRLITNSQ 900

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+  P +P  + +   +++  V  L +RL+VV GSD +S E Q+NAT++F  L+R
Sbjct: 901  QIFHIDPRKP--SDIHPLQIVDGVNALAQRLLVVRGSDKISNETQKNATLLFGILLR 955

[81][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  127 bits (319), Expect = 5e-28
 Identities = 68/176 (38%), Positives = 104/176 (59%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRNS GDV+QF+YGEDG+D  ++E Q  + +       ++ Y+ID         
Sbjct: 855  VQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFERRYKIDLMNPKTKP- 913

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
            L+ E    +  D  V++ + +E  Q+  D R+LREEV TNGD    +P+N+ R++ N+Q 
Sbjct: 914  LNIESGNDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQR 973

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             FN    +   + L + E++  V+ LC+RL +V G   L+ EAQ NAT++F  LVR
Sbjct: 974  IFNVDKSKV--SDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCLVR 1027

[82][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  127 bits (318), Expect = 7e-28
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPP-- 176
            V+Y GTVRNS GDV+QFLYGEDGMDA  IE Q  + L++   +    + ID   D+P   
Sbjct: 844  VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSVKEFAAKFHIDP--DVPGFN 901

Query: 177  -DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
              WLS E+   L     V + +  E  +++ D RV    +   GD  V++P+N+ R++WN
Sbjct: 902  NGWLSEEQASELAHTAKVREILDAEWDRLQRD-RVELRTICPTGDPHVHLPVNMKRILWN 960

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ ++       G   ++V  +I  V EL  +L+VV G+D LSVEAQRN T++F + VR
Sbjct: 961  AQKQYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVR 1019

[83][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
            RepID=Q1L5Y7_ANTMA
          Length = 780

 Score =  126 bits (317), Expect = 9e-28
 Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  E LK   +  +  YR +  + +  P 
Sbjct: 545  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRYEIDSSNWNPS 604

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++ +E  E L+T   +      E+ +++ D   L   + T GD    +P+N+ RL+ NAQ
Sbjct: 605  YMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQ 664

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     RP  + +   E++  V +L ERL VV+G D LS+EAQ+NAT+ F+ L+R
Sbjct: 665  KTFKVDFRRP--SDMHPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLR 719

[84][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score =  126 bits (317), Expect = 9e-28
 Identities = 74/182 (40%), Positives = 100/182 (54%), Gaps = 6/182 (3%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179
            V+Y GTVRNS GDV+QFLYGEDGMDA  +E Q  + L+    K  K + +D         
Sbjct: 845  VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRDSREKFRKRFHMDPDEPGFGRG 904

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            W+S  +   L         + +E  ++ +D   LR   ++ GD+ V++P+NL R+IWNAQ
Sbjct: 905  WMSEAQVNDLANSAEKRALLEEEWERLLKDREELR-RTMSTGDQNVHLPVNLKRIIWNAQ 963

Query: 360  TKFN-----CKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
              +            G   LQ   VI  V+ +   LVVV G D LSVEAQRNATI+F +L
Sbjct: 964  NNYRKVKDASSGGSRGGEELQAVHVIESVKSMLNGLVVVPGRDALSVEAQRNATILFFAL 1023

Query: 525  VR 530
            VR
Sbjct: 1024 VR 1025

[85][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
            RepID=Q2TUN5_EPHVI
          Length = 1013

 Score =  126 bits (316), Expect = 1e-27
 Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
            V+Y  TVRNS GDV+QFLYGEDGMDAVRIE Q  ++LK    + D+ ++ +  ++   P 
Sbjct: 790  VKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFDETFKHELGQENWHPT 849

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++  E  + ++     +  +  E  +++ D R L  E+   G+    +P+NL RLIWNAQ
Sbjct: 850  YMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQ 909

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F   P +   + +Q  E++  + +L ERL VV G D LS EAQ+NAT+ F+ L+R
Sbjct: 910  KIFKVDPRKT--SDMQPLEIVDTIDKLQERLKVVPGDDPLSFEAQKNATLFFNILLR 964

[86][TOP]
>UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
           integrifolia RepID=Q1ACT7_MACIN
          Length = 240

 Score =  126 bits (316), Expect = 1e-27
 Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV  E Q  + LK   ++ +K +R         P 
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWTETQKLDSLKMKKSEFNKVFRYGIDDESWNPS 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T GD    +P+NL RLIWNAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+  + L+R
Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFLNILLR 194

[87][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=A1YIB6_9FUNG
          Length = 1018

 Score =  126 bits (316), Expect = 1e-27
 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRNS G+++QF YGEDGMD   +E Q  + ++    K +K+Y++D         
Sbjct: 788  VKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMANDKFEKSYKVDVMDKEKGFK 847

Query: 183  LSAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
                E+  L+    + + +  + +E  Q+ +D RVLRE + T+GD+   +P NL RL+WN
Sbjct: 848  SGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWN 907

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+    +P  + L   ++I  V+ L +RL+VV GSD LS EAQ NAT+++  L+R
Sbjct: 908  AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEAQLNATLLYQCLLR 964

[88][TOP]
>UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans
            RepID=A1YIA8_9ASCO
          Length = 1001

 Score =  125 bits (315), Expect = 1e-27
 Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173
            V+Y GTVRNS GD++ F+YGEDG+DA  +E Q+ + ++   A  ++AYR+D T   R +P
Sbjct: 773  VKYDGTVRNSLGDIINFVYGEDGLDAASVEYQVLDTMRLSNAAFEEAYRVDVTDPDRTIP 832

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P +   E    +  D  V++ +  E  ++ ED R L+  +  +GD    +P+NL R+I N
Sbjct: 833  PSFF--EPGHDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSSWPLPVNLDRIILN 890

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRM 533
            ++  F+  PHR   T L   ++ T VR+L  RL++V G+D +S E Q+ AT +F  LVRM
Sbjct: 891  SKQIFHIAPHRR--TDLSPAKIYTGVRDLLSRLIIVRGNDRISKEHQQQATGLFQILVRM 948

[89][TOP]
>UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces
            macroporosum RepID=Q2PYR0_9FUNG
          Length = 999

 Score =  125 bits (314), Expect = 2e-27
 Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176
            V+Y GTVRNS GD++QF YGEDGMD  R+E Q    +    A   K YRID +      P
Sbjct: 774  VKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFKKKYRIDISEPQVFKP 833

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD-EKVNIPLNLARLIWN 353
                   Y  L  +PA +  +  E  Q+ +D   LR  +  N   +K  +P+NL RLIWN
Sbjct: 834  GSCEQSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWN 893

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A   F     +P  T L    VI  V EL E L+VV G+D LS+EAQ+NAT++F  L+R
Sbjct: 894  ACHTFGIDRSKP--TDLNPLHVIKSVNELMENLLVVRGNDQLSIEAQKNATLLFSILLR 950

[90][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
            RepID=Q2PYR1_9FUNG
          Length = 1022

 Score =  125 bits (313), Expect = 3e-27
 Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y G+VRNS G +VQF YGEDGMD+  +EGQ    +++   K +  Y +   D+ +  P
Sbjct: 797  VQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSVNLVRYSDKKFESTYFVDVMDSEKSFP 856

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
               L     + +  +  V++ + DE  Q+KED  +LR+ +  +G+ +  +P+NL RLI N
Sbjct: 857  SGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLPRLIKN 916

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+    +P  + L   E++ K+R+L + L+V+ G+D L+ EAQ+NAT++F   +R
Sbjct: 917  AQQIFHIDHRKP--SNLSPVEIVEKIRKLADSLIVLRGNDSLTREAQQNATLLFQIYLR 973

[91][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
            RepID=A7J591_9LECA
          Length = 1020

 Score =  125 bits (313), Expect = 3e-27
 Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
            +Y GT+RNS GD+VQF+YGEDG+D   IE Q  + +K   AK +K +R+D   + P    
Sbjct: 788  KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQPIDIIKCSDAKFEKDFRVDLMEEDPKTSI 847

Query: 174  -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
             PD+L  E+   +  +  V+Q + +E  Q+K     LR++     D  + +PLN++R++ 
Sbjct: 848  SPDFL--EQATEIAGNVQVQQHLDEEFEQLKAAREFLRKDKPIAADATIYLPLNISRILE 905

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             A T FN K      + L   EVIT+V  L ERLVVV G   LS E Q NAT++F +L+R
Sbjct: 906  TAMTTFNIK--HGSRSNLDPVEVITEVNRLLERLVVVRGDHSLSKEGQHNATLLFKALLR 963

[92][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score =  124 bits (312), Expect = 3e-27
 Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD++QFLYGEDG+DA+ IE Q  ++L     K D  Y++D      P+ L
Sbjct: 864  KYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLNMSNKKFDDRYKLDVMDANKPEEL 923

Query: 186  SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359
               EY   +  DPA +Q + +E   + ED RV+RE       DE + +PLN+ R++  A+
Sbjct: 924  DWLEYGNEIAGDPASQQLLDEEYEALAEDRRVVREINFRRKDDESMQLPLNIVRIMETAK 983

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              FN +  +   + L  ++VI  V  + +R+ VV G DGLS EA  NATI+F + +R
Sbjct: 984  KLFNVQDFQR--SDLTPQDVIPAVSSMLDRMTVVRGPDGLSKEADYNATILFKAHIR 1038

[93][TOP]
>UniRef100_A7J5B1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teloschistes exilis
            RepID=A7J5B1_9LECA
          Length = 1003

 Score =  124 bits (312), Expect = 3e-27
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GT+RNS GD+VQF+YGEDG+D   IE Q  + +    AK +K +RID   D P   +
Sbjct: 772  KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 831

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SAE  E    +  D  V+Q + +E  Q+K     LR+    +  + + +PLN+ R++  A
Sbjct: 832  SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 890

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             T FN K      + L   EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 891  MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 946

[94][TOP]
>UniRef100_A7J588 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterodermia vulgaris
            RepID=A7J588_9LECA
          Length = 996

 Score =  124 bits (312), Expect = 3e-27
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GT+RNS GD+VQF+YGEDG+D   IE Q  + +    AK +K +RID   D P   +
Sbjct: 765  KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 824

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SAE  E    +  D  V+Q + +E  Q+K     LR+    +  + + +PLN+ R++  A
Sbjct: 825  SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 883

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             T FN K      + L   EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 884  MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 939

[95][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score =  124 bits (311), Expect = 4e-27
 Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP--- 173
            V+Y GTVR++QG+VVQFLYGEDGMDA ++E Q  + +    AK    Y  ++    P   
Sbjct: 793  VKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFT 852

Query: 174  ----------------PDWLSAEEYEALRTDPAVE-QAMRDEMAQIKEDLRVLREEVLTN 302
                              ++S + Y+ +  DPA     +R+E   + ED  +LR E+  N
Sbjct: 853  NPTESSVSMPSGGILKESFISTKVYDEILKDPATYLSKVREEYKTLMEDRHILRTEIFPN 912

Query: 303  GDEKVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLS 482
             + K+ +P+NL R+I NAQ ++   P     + +    VI K+++LC+ LVV+ G+D LS
Sbjct: 913  AENKIVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELS 972

Query: 483  VEAQRNATIMFHSLVR 530
             EAQ NAT++F   +R
Sbjct: 973  TEAQTNATLLFSMFLR 988

[96][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
            RepID=Q2PYQ9_9FUNG
          Length = 845

 Score =  124 bits (311), Expect = 4e-27
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID---TTRDMP 173
            V+Y GTVRNS GDV+QF YGEDGMDA  +E Q    L       ++ YR+D   T   + 
Sbjct: 620  VKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFERRYRLDVLNTKGGLK 679

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P+ L  +    +  +  V+  + +E  Q++ED   L + +   GD K  +P NL RLI N
Sbjct: 680  PNTLEFDVQRQIEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITN 739

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+    +P  + L    +I  VR+L E L+VV GSD +SVEAQRNAT+++  L+R
Sbjct: 740  AQQIFHIDRRKP--SDLNPVNIIEGVRKLSEELLVVRGSDKISVEAQRNATLLYQILLR 796

[97][TOP]
>UniRef100_A7J592 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyxine subcinerea
            RepID=A7J592_9LECA
          Length = 1015

 Score =  124 bits (311), Expect = 4e-27
 Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GT+RNS GD+VQFLYGEDG+D   IE Q+ + +K   A+ +K +R+D   D P   +
Sbjct: 784  KYDGTIRNSLGDIVQFLYGEDGLDGATIEPQLLDIIKCSDARFEKMFRVDLMEDDPRTSI 843

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SAE  E    +  +  V+Q +  E  Q+K     LR+   T+ +E++ +PLN+ R++  A
Sbjct: 844  SAEFLEQATEVAGNIEVQQYLDQEFEQLKAAREFLRKN-KTDENEQLQLPLNVIRILDTA 902

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T FN K      + L   EVI +V +L +RLVVV G D LS E+Q NAT++F + +R
Sbjct: 903  KTTFNIK--TGARSNLHPAEVIPQVNDLLDRLVVVRGDDALSKESQHNATLLFKAQLR 958

[98][TOP]
>UniRef100_Q1ACT0 RNA polymerase II largest subunit (Fragment) n=2 Tax=Cucurbitaceae
           RepID=Q1ACT0_9ROSI
          Length = 240

 Score =  123 bits (309), Expect = 7e-27
 Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
           V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK    + ++ +R +    +  P+
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPN 79

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++  E  E L+T          E+ +++ D   L  E+ T G+    +P+NL RLI NAQ
Sbjct: 80  YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEITTTGENSWPMPVNLKRLIQNAQ 139

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     R   + +   E++  + +L ERL VV G D LSVEAQ+NAT+ F+ L+R
Sbjct: 140 KTFKIDFRRA--SDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 194

[99][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea scutellifera
            RepID=A5H2F1_9LECA
          Length = 993

 Score =  123 bits (309), Expect = 7e-27
 Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
            +Y GT+RNS GD+VQF+YGEDG+D   IE Q  + +    AK +K +R+D   + P    
Sbjct: 763  KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQKLDIIVCSEAKFEKDFRVDLMDNNPRTTI 822

Query: 174  -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
             PD+L  E+   + TD  V++A+ +E  Q+K     LR+    +  E + +PLN+ R++ 
Sbjct: 823  SPDFL--EQATVIATDQKVQKALDEEYEQLKAAREFLRKN-KKDASEDLQLPLNIPRILE 879

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             A T FN K      + L   EVIT V  L +RLVVV G D LS E Q NAT++F +L+R
Sbjct: 880  TAMTTFNIK--NGSRSNLDPVEVITDVNNLLDRLVVVRGDDPLSREGQHNATLLFKALLR 937

[100][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  123 bits (308), Expect = 1e-26
 Identities = 72/176 (40%), Positives = 101/176 (57%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK   A+ ++ Y+ +  RD   DW
Sbjct: 871  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYKFEIDRD---DW 927

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
                        P        E+++++ D R +  E+   G+    +P+NL RLIWNAQ 
Sbjct: 928  -----------SPDYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQK 976

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     +P  + +   E++  V +L ERL VV G D +S+EAQRNAT+ F  L+R
Sbjct: 977  IFKVDFRKP--SDMHPMEIVEAVDKLQERLRVVPGDDQISMEAQRNATLFFGCLLR 1030

[101][TOP]
>UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium
            dendrobatidis RepID=Q2PYS7_BATDE
          Length = 985

 Score =  122 bits (307), Expect = 1e-26
 Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMPP 176
            +Y GTVRN+ GD+VQF YGEDGM+  ++E Q    +    A   ++YR+D       + P
Sbjct: 769  KYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVDILDGVHKLKP 828

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTN-GDEKVNIPLNLARLIWN 353
            + L     + +  +P  +    +E  Q+ ED  +LR+++  N   +K  +P+NL RLIWN
Sbjct: 829  NKLEYRIIDDMSQNPEAQVKFDEEFEQLAEDRLMLRQQIFPNTSTDKWALPVNLERLIWN 888

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+  F+   ++P  + L    VI KV+ L + LVVV G D LS+EAQ NAT++F  L+R
Sbjct: 889  ARNTFHLDRNKP--SDLHPMHVIDKVKALLDNLVVVRGKDELSLEAQYNATLLFQILLR 945

[102][TOP]
>UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp.
            GE13 RepID=Q2PYP9_9FUNG
          Length = 813

 Score =  122 bits (307), Expect = 1e-26
 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173
            ++Y GTVRNS G ++QF YGEDGMD   +E Q  E ++   AK +K Y+ID T     + 
Sbjct: 587  IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 646

Query: 174  PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
            P  L     E L +    V++ + +E   ++ED ++ RE +  NGD    +P+N+ RLIW
Sbjct: 647  PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 706

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            NAQ  F+    +   + L    +  K  EL +RLVVV G D LS EAQ N+TI F +L++
Sbjct: 707  NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 764

[103][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
            frontalis RepID=A1YIC6_NEOFR
          Length = 1004

 Score =  122 bits (307), Expect = 1e-26
 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173
            ++Y GTVRNS G ++QF YGEDGMD   +E Q  E ++   AK +K Y+ID T     + 
Sbjct: 773  IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 832

Query: 174  PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
            P  L     E L +    V++ + +E   ++ED ++ RE +  NGD    +P+N+ RLIW
Sbjct: 833  PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 892

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            NAQ  F+    +   + L    +  K  EL +RLVVV G D LS EAQ N+TI F +L++
Sbjct: 893  NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 950

[104][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score =  122 bits (306), Expect = 2e-26
 Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G ++Q  YGEDG+D + +E Q    +K   A  +K +++D + D     
Sbjct: 71  VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQTMPTMKPSNALFEKEFKLDLSDDKAVRK 130

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           +  E+    L+ D  V + +  E  Q++ED R+LR ++   GD K+ +P NL RLIWNAQ
Sbjct: 131 VYTEDLIRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 189

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 190 KIFHVETRQP--TSLNPLRVIQGVRELSEKLVIVCGDDRISKQAQYNATLLMNILLR 244

[105][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2W4S0_PYRTR
          Length = 1742

 Score =  122 bits (306), Expect = 2e-26
 Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMP-- 173
            V+Y GTVRNS GD+V+F+YGEDG+D   IE Q  + +    A  + AY++D  T D P  
Sbjct: 861  VKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCSDADFEAAYKLDVLTTDQPEI 920

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P W   E     + D  V++A+ +E  QIK D  VLR+ +     +   +PLN+ R+I +
Sbjct: 921  PVW-KLEGSPMFQGDVDVQRALDEEFEQIKNDRAVLRDTLNEEELDSFQLPLNIQRMIRS 979

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ +F   P +   + L   E I +VRE  +RL+V+ G+D LS+EAQ +AT +F + +R
Sbjct: 980  AQARFGINPEK-AVSNLTPIEAIQQVRETLDRLIVIRGTDELSIEAQNSATQLFKAHLR 1037

[106][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  122 bits (306), Expect = 2e-26
 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179
            V Y GT RNS GD++QF+YGEDG+DA ++E Q  + +       ++ YRID   ++    
Sbjct: 844  VHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIPGSDESFERRYRIDVLEKNASIS 903

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
                E  E ++ D  +++ + +E  Q+ ED + LR+ V  NGD    +P+NL R+I NAQ
Sbjct: 904  TNLLESGEEIQGDVELQKILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQ 963

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+    +P  + L++ E++  VR+LC + +VV G   L  EAQ NAT++F  LVR
Sbjct: 964  QIFHSGRDKP--SDLRLDEIVESVRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVR 1018

[107][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  122 bits (305), Expect = 2e-26
 Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
            V+Y GTVRN    +VQ  YGEDG+DA  +E Q    LK      ++ ++ D T +     
Sbjct: 784  VKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNERNMKK 843

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
             LS E  + L  D      +  E  Q++ED  +LR  +   GD KV +P NL R+IWNAQ
Sbjct: 844  CLSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQ 902

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F    H+P  T L   +V+  V +LC+RL+VV G D LS++A  NAT++F  L+R
Sbjct: 903  KIFRIDTHKP--TDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIR 957

[108][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  122 bits (305), Expect = 2e-26
 Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID--TTRDMPP 176
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ YRID   T++M  
Sbjct: 850  VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYRIDILDTKNMIS 909

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            + L  E  + +R D  +++ + +E  Q+ +D + LRE    NGD    +P+NL R+I NA
Sbjct: 910  ESL-IESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  F+   +R   + L+++E+I  VRELC++L+VV G   L  EAQ NAT++F  L+R
Sbjct: 969  QQIFHNGRYRA--SDLRLEEIIFGVRELCKKLLVVRGDTPLVKEAQENATLLFQCLLR 1024

[109][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  121 bits (304), Expect = 3e-26
 Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y GTVRNS GDVVQF+YGEDGMDAV IE Q  + LK    + D  +R +    +  P+
Sbjct: 868  VKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQNLDSLKMKKEEFDTVFRYELDDENWRPN 927

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +L    ++ L+T       +  E+ +++ D   L  E+ TNG     +P+NL RLIWNAQ
Sbjct: 928  YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F  K      + +   E++  + +L ERL VV G D +S+EAQ+NAT+ F+  +R
Sbjct: 988  KTF--KIDIRTCSDMHPIEIVEAIDKLQERLKVVPGDDAISIEAQKNATLFFNIHLR 1042

[110][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
            RepID=B7SNX1_TOBAC
          Length = 1010

 Score =  120 bits (302), Expect = 5e-26
 Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176
            V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q  + LK   +  D   AY ID   +  P
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFDDLYAYEIDDP-NWNP 845

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
             ++  E  E L+T   +      E+ +++ D + L  E+   GD    +P+N+ RL+ NA
Sbjct: 846  SYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVLNA 905

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  F     R   + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 906  QKTFKIDFRRR--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 961

[111][TOP]
>UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae
            RepID=Q2PYS0_9FUNG
          Length = 1007

 Score =  120 bits (302), Expect = 5e-26
 Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 8/184 (4%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GTVRNS G +VQF YGEDGMDA  IE Q F+ L+    + +  Y +      P   
Sbjct: 780  VNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTV---KPSGE 836

Query: 183  LSAEE--------YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLA 338
            L+ +          +A  +  A  +A+ DE AQ+  D  +LR  V T+G+ +  +P+N+ 
Sbjct: 837  LNVDSALFDNDAFLDAGISYLAFNKALADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIK 896

Query: 339  RLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFH 518
            RLI NAQ  F+C  HRP  T L    VI+ V  L + L V+ G+D LS EA  NATI+F 
Sbjct: 897  RLIRNAQVMFHCHAHRP--TNLHPSLVISTVERLLKGLTVIRGNDALSEEANTNATILFK 954

Query: 519  SLVR 530
             LVR
Sbjct: 955  VLVR 958

[112][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score =  120 bits (301), Expect = 6e-26
 Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 6/182 (3%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID----TTRDM 170
            V+Y GTVRNS G VVQF+YGEDGMDA  +E Q  E ++    +  + Y++D     TR  
Sbjct: 790  VKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEEEFKRRYKLDLMTPETRKW 849

Query: 171  PPDWLSAEEYEALRTDPAVEQA--MRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARL 344
             P  ++ +    L  D   E A  +  E  Q+ ED  V+R  +  NGD    +P N+ RL
Sbjct: 850  LPTVVTNDVRHELLGDGMDENAKVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRL 909

Query: 345  IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
            IWNA+     K      + L+ +E++  V +L  R +V+ G DGLS  AQ NAT++F+ L
Sbjct: 910  IWNARNM--AKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDGLSTMAQHNATLLFNIL 967

Query: 525  VR 530
            VR
Sbjct: 968  VR 969

[113][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  120 bits (300), Expect = 8e-26
 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G ++Q  YGEDG+D + +E Q    +K   +  +K Y ++   D     
Sbjct: 83  VNYDGTVRNSVGQLIQVRYGEDGLDGMWVESQTLPTMKLTNSLFEKKYHLNIHDDKEMSR 142

Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           L S +    LR DP V++ +  E  ++ ED  +LR E+   GD K  +P NL RLIWNAQ
Sbjct: 143 LYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQ 201

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+    +P  T L    +I  VR+L +RLV+V G+D +S +AQ NAT++ + L+R
Sbjct: 202 KIFHVDLRKP--TELHPATIIEGVRKLGDRLVIVSGTDKISRQAQENATLLMNILLR 256

[114][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  119 bits (299), Expect = 1e-25
 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ YR+D    + P+ 
Sbjct: 116 VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 172

Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
                  E  + +R D  +++ + +E  Q+  D R LRE   TNGD    +P+NL R+I 
Sbjct: 173 CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 232

Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           NAQ  F+   H+   + L+++E++  V+ELC++L+V+ G   L  E+Q NAT++F  LVR
Sbjct: 233 NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 290

[115][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMD9_9BILA
          Length = 595

 Score =  119 bits (299), Expect = 1e-25
 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
           V Y GTVRNS G ++Q  YGEDG+D + +E Q    +K   A  +  +++D T + M   
Sbjct: 42  VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQQMLTMKPTNAVFESEFKLDITDEKMLRK 101

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
             S +    L   P   + +  E AQ++ED R+LR ++  NGD K+ +P NL RLIWNAQ
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL  +L++V G D +S +AQ NAT++ + L+R
Sbjct: 161 KIFHIELRKP--TDLSPLRVIEGVRELSRKLIIVSGEDRISKQAQYNATLLMNILLR 215

[116][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  119 bits (299), Expect = 1e-25
 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ YR+D    + P+ 
Sbjct: 682  VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 738

Query: 183  L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
                   E  + +R D  +++ + +E  Q+  D R LRE   TNGD    +P+NL R+I 
Sbjct: 739  CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 798

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            NAQ  F+   H+   + L+++E++  V+ELC++L+V+ G   L  E+Q NAT++F  LVR
Sbjct: 799  NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 856

[117][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  119 bits (298), Expect = 1e-25
 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ +RI   D+++ +P
Sbjct: 850  VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
               L  E  + ++ D  +++ + +E  Q+ +D + LRE    NGD    +P+NL R+I N
Sbjct: 910  ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+   ++   + L++ EVI  VR LCE+L+VV G   L  EAQ NAT++F  LVR
Sbjct: 968  AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024

[118][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
            RepID=Q1L5Y6_SOLLC
          Length = 773

 Score =  119 bits (298), Expect = 1e-25
 Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176
            V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q  + LK      D   AY ID   +  P
Sbjct: 545  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDP-NWNP 603

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
             ++  E  E L+    +      E+ +++ D   L  E+   GD    +P+N+ RL+ NA
Sbjct: 604  SYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNA 663

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  F     RP  + +   E++  V +L ERL VV G D LS+EAQ+NAT+ F+ L+R
Sbjct: 664  QKTFKIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 719

[119][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  119 bits (298), Expect = 1e-25
 Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179
           V Y GTVRNS G +VQ  YGEDG+D + +E Q+   +K   A  ++ +++D + + M   
Sbjct: 82  VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQVMSTMKPSNALFERDFKLDLSDEKMMRR 141

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
             S + Y  L+ +P   + + +E AQ++ED R+LR +   NGD KV +P NL RLIWNAQ
Sbjct: 142 CYSEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQ 200

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +      T L    VI  V+ L ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 201 KIFHVETREV--TSLNPLAVIRGVKNLSDKLIIVGGEDRISRQAQFNATLLMNILLR 255

[120][TOP]
>UniRef100_A9Q9R3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria fuscula
            RepID=A9Q9R3_9EURO
          Length = 999

 Score =  119 bits (298), Expect = 1e-25
 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D      P W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKPVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL++V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951

[121][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  119 bits (298), Expect = 1e-25
 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ +RI   D+++ +P
Sbjct: 850  VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
               L  E  + ++ D  +++ + +E  Q+ +D + LRE    NGD    +P+NL R+I N
Sbjct: 910  ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+   ++   + L++ EVI  VR LCE+L+VV G   L  EAQ NAT++F  LVR
Sbjct: 968  AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024

[122][TOP]
>UniRef100_A1YIB7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glomus mosseae
            RepID=A1YIB7_GLOMO
          Length = 1054

 Score =  119 bits (298), Expect = 1e-25
 Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 17/193 (8%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------ 164
            V+Y GTVRNS GD++QF YGEDGMDA  +E Q  + L       DK Y ++  +      
Sbjct: 807  VKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSLPISNDTFDKKYLVELPKPEEKEK 866

Query: 165  -----------DMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDE 311
                       +     L  E+ +    D  V+  ++ E  Q+KED  +L+  +   GD 
Sbjct: 867  EKEEKEKENKEEKKKQELEQEKAKIKSHDEIVKDKIKAEYEQLKEDRHLLQTFIFPKGDN 926

Query: 312  KVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEA 491
            +  +P+N+ RLI NAQ KF   P +   + LQ  +VI  + EL  +L VV G D +SVEA
Sbjct: 927  RWPLPVNIKRLIKNAQQKFKIIPSQRTKSDLQFVDVIDSIDELLSKLEVVKGKDRISVEA 986

Query: 492  QRNATIMFHSLVR 530
            Q NAT++F  L+R
Sbjct: 987  QSNATLLFKILIR 999

[123][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score =  119 bits (297), Expect = 2e-25
 Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V+Y GTVRN+   +VQ  YGEDG+DAV +E Q    +K   A  +K +++ T+ +     
Sbjct: 4   VQYDGTVRNAHQALVQLRYGEDGLDAVAVEFQSLPTMKPSNAAFEKRFKLQTSNERYLRR 63

Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           L   +   ++ TD  V QA+  E  Q+K D  ++R ++   GD +V +P NL R++WNAQ
Sbjct: 64  LYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQ 122

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ K    G T L    V+  + EL ++LV+V G D LS EAQ NATI+ ++++R
Sbjct: 123 KIFHIKGR--GTTDLHPVRVVEGLNELMKKLVIVKGEDRLSREAQENATILMNTMLR 177

[124][TOP]
>UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi
           RepID=A9QMR2_9BILA
          Length = 284

 Score =  119 bits (297), Expect = 2e-25
 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D T +     
Sbjct: 82  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPSNAVFEKQFKLDITDEKAIKK 141

Query: 183 LSAEE--YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           +  E+  +E  ++     + + +E AQ++ED R+LR+   T  D KV +P NL RLIWNA
Sbjct: 142 VYTEDVIHELQQSTSDALKKVEEEWAQLQEDRRLLRKIFPTGDDRKVVLPCNLKRLIWNA 201

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F+ +  +P  T L    VI  ++EL ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 202 QKIFHVETRKP--TSLSPLRVIDGIKELSKKLIIVSGDDSISKQAQYNATLLMNILLR 257

[125][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  118 bits (296), Expect = 2e-25
 Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D + +EGQM   +K   A  +K +++D + D     
Sbjct: 78  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDDRSLRR 137

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + +EE    L+      + + DE  Q++ED R+LR ++   GD KV +P NL RLIWNAQ
Sbjct: 138 IYSEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQ 196

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F  +  +   T L    VI  VR + ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 197 KIFKVETRKV--TALNPLRVIEGVRNVSKKLVIVSGDDRISKQAQYNATLLMNILIR 251

[126][TOP]
>UniRef100_Q5I3D2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Clavaria
           zollingeri RepID=Q5I3D2_CLAZO
          Length = 253

 Score =  118 bits (296), Expect = 2e-25
 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 4/182 (2%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS GD++QF+YGEDG+D   IE Q  +   +     ++AYR+D T   P   
Sbjct: 29  VCYDGTVRNSLGDLIQFVYGEDGIDGAFIERQFIDTYGYSHKAFERAYRVDVTD--PARG 86

Query: 183 LSAEEYEALRTDPAVE-QAMRD-EMAQIKEDLRVLREEVLTNGD--EKVNIPLNLARLIW 350
            S    +    D ++E QA  D E +Q+++D +VLRE +    D  E+ ++P+NL+R+  
Sbjct: 87  FSPGVLQVGLDDSSLELQAKLDEEYSQLRDDRKVLREFIFPRADPAEQHSLPVNLSRIAQ 146

Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           NAQ  F     +P  + L+   +I  V+ELC+RLVVV G D LS EAQ NAT+MF    R
Sbjct: 147 NAQQIFRIDRRKP--SDLEPAYIIDSVKELCKRLVVVPGDDPLSREAQDNATLMF----R 200

Query: 531 MH 536
           MH
Sbjct: 201 MH 202

[127][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
            RepID=A1YIB1_9BASI
          Length = 1013

 Score =  118 bits (296), Expect = 2e-25
 Identities = 66/176 (37%), Positives = 102/176 (57%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GTVRNS GD+VQF+YGEDG+D   +E Q  + ++    K DK +R+D T       
Sbjct: 786  VTYDGTVRNSLGDIVQFVYGEDGVDGGTVEYQNLDPVRLSNEKFDKKFRVDVTDPAMTYK 845

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
                +     +  A++  +  E  Q+ +D ++LRE + T+G+ +  +P+N+ R+I NAQ 
Sbjct: 846  AGVLQVGLDDSSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQ 905

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+    +P  + L   ++I  V +LC RL+VV G D LS  AQ NAT++F  L+R
Sbjct: 906  IFHIDFRKP--SDLPPPDIIQMVNDLCNRLIVVRGDDALSRAAQXNATLLFRILLR 959

[128][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  118 bits (295), Expect = 3e-25
 Identities = 69/177 (38%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y  T+RNS GD++QF+YGEDGMDAV +E Q  E +K    +  K Y+ +   R+    
Sbjct: 860  VQYDSTLRNSIGDIIQFVYGEDGMDAVYVENQKLESMKMGDKEFGKVYKFEPDARNFGDG 919

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            ++ A+  + +R        +  E  Q+  D   LRE + T+ +    +P+NL RLIWNAQ
Sbjct: 920  FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESIPTD-ENTWPLPVNLKRLIWNAQ 978

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+    +P  + L   ++I  V  L ++LVV+ G D LSVEAQ NAT++F  LVR
Sbjct: 979  KIFHIDVRKP--SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQANATMLFQILVR 1033

[129][TOP]
>UniRef100_A9Q9S3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella mucosa
            RepID=A9Q9S3_9EURO
          Length = 999

 Score =  118 bits (295), Expect = 3e-25
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +RID        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISLSDNAFEKQFRIDLMEPKKLAW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLRE--EVLTNGDEKVNIPLNLARLIWN 353
                E+   ++ D  V++    E  Q+ ED R LR+  +  T+ DE + +P+N+ R++  
Sbjct: 835  QGRLEQASEIQGDVDVQKLFDQEYDQLVEDRRFLRDIKQAATSSDEMMPLPMNIVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F+ +   P  + L    VI KV++L +RLVVV G+D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFHIQSGAP--SDLHPSYVIPKVKQLLDRLVVVRGTDRISLEAQENATLLIKAQLR 951

[130][TOP]
>UniRef100_A9Q9S2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria maura
            RepID=A9Q9S2_9EURO
          Length = 999

 Score =  118 bits (295), Expect = 3e-25
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K YR+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLVVV G D +SVEAQ NAT++  + +R
Sbjct: 895  ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDPISVEAQENATLLIKAQLR 951

[131][TOP]
>UniRef100_A9Q9Q5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria
            adriatica RepID=A9Q9Q5_9EURO
          Length = 988

 Score =  118 bits (295), Expect = 3e-25
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K YR+D        W
Sbjct: 764  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 823

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 824  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 883

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLVVV G D +SVEAQ NAT++  + +R
Sbjct: 884  ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISVEAQENATLLIKAQLR 940

[132][TOP]
>UniRef100_A9Q9L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavascidium umbrinum
            RepID=A9Q9L8_9EURO
          Length = 999

 Score =  118 bits (295), Expect = 3e-25
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDLMESKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KVR+L ERL VV G+D +SVEAQ NAT++  + +R
Sbjct: 895  ARTTFKIRSGGP--SDLHPSYVIPKVRQLLERLTVVRGNDSISVEAQENATLLIKAQLR 951

[133][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  117 bits (293), Expect = 5e-25
 Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------D 167
            RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L     + +K +  DT+       +
Sbjct: 797  RYDGTLRTSSGQIVQFLYGEDGMDAVWIEKQNFDSLTLAKPEFNKRFLFDTSSPEFGHDE 856

Query: 168  MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332
                +L  +  E  R DP ++  +  E+  ++ED  +LR      E     D+    P N
Sbjct: 857  QGIPFLEPDVIEECRRDPDIQATLDQEIEILREDQAILRIVMRSREAGRESDDSSYAPGN 916

Query: 333  LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512
            + R+I NA  +F     +P  T L   EVI  V  L ERL+VV+G+D LSVEAQ NAT +
Sbjct: 917  VRRVIHNAMRQFRIDKSKP--TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEAQSNATTL 974

Query: 513  FHSLVR 530
            +  L+R
Sbjct: 975  YRILIR 980

[134][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score =  117 bits (293), Expect = 5e-25
 Identities = 68/178 (38%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
           V Y GTVRNS   +VQ  YGEDG+D + +E Q    +K   A  +K +++D +  + +  
Sbjct: 82  VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQAMPTMKPTNALFEKDFKLDLSDEKSLRK 141

Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            +    ++E   +  A+++A  DE  Q++ED R+LR ++  +GD K+ +P NL RLIWNA
Sbjct: 142 MYTEDVQHELQGSSEALKEA-EDEWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNA 199

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F+ +  +P  T L    VI  VREL ++L++V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFHVETRKP--TDLNPLRVIEGVRELSKKLIIVSGEDRISKQAQYNATLLMNILIR 255

[135][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7SDN0_NEUCR
          Length = 1752

 Score =  117 bits (293), Expect = 5e-25
 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPDW 182
            +Y GTVRNS GD++QF+YGEDG+D + IE Q  ++        DK YR+D    ++    
Sbjct: 865  QYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPVDHFTISNKAFDKRYRLDVMDEEVSSGE 924

Query: 183  LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLT--NGDEKVNIPLNLARLIWN 353
            L A EY + L +DP V++ +  E  Q+  D  +LRE   T  N D K+ +PLN+ R+I  
Sbjct: 925  LEALEYGKELASDPTVQELLDQEYEQLSVDRHMLREIQRTKGNNDTKMQLPLNIIRIIDT 984

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+  F  K      + L  K+VI  V+ + +R++VV G D +S EA  NATI+F + +R
Sbjct: 985  AKKLF--KVDETARSDLTPKDVIPAVKAMLDRMIVVRGDDPISKEADYNATILFKAQLR 1041

[136][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  117 bits (293), Expect = 5e-25
 Identities = 63/176 (35%), Positives = 102/176 (57%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            VRY GTVRN+ GD++QF YGEDG+DA  +E Q+F+ L+    + +K YRID   D     
Sbjct: 856  VRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRS--- 912

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
            LS     ++  D +V+  + +E  Q+  D  +L + +   GD +  +P+N+ R+I NA  
Sbjct: 913  LSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQ 972

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L   ++I  + EL  +L +  GSD ++ + Q NAT++F  L+R
Sbjct: 973  IFHLEAKKP--TDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLR 1026

[137][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score =  117 bits (292), Expect = 7e-25
 Identities = 76/188 (40%), Positives = 102/188 (54%), Gaps = 11/188 (5%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------RD 167
            RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L  +  + D+ Y + +        D
Sbjct: 859  RYDGTLRTSGGQIVQFLYGEDGMDAVWIERQSFDSLTLNKREFDERYLLHSDDPDFGYDD 918

Query: 168  MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332
                +L AE  E  R +P V+Q +  EM  +KED  +LR      E     D     P N
Sbjct: 919  QNIPFLEAEVIEDCRHNPEVQQMLDREMEVLKEDQAMLRIIMANREAGRESDVNSYAPGN 978

Query: 333  LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512
            + R+I NA  +F      P  + L  K+VI K+  +  RLVVV+G D LSVEAQ NAT +
Sbjct: 979  VKRVIQNALRQFQIDKGLP--SNLHPKDVIEKIEAMLRRLVVVVGDDLLSVEAQNNATTL 1036

Query: 513  FHSLVRMH 536
            +  L+R +
Sbjct: 1037 YRILIRSY 1044

[138][TOP]
>UniRef100_A9Q9T1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria weddellii
            RepID=A9Q9T1_9EURO
          Length = 999

 Score =  117 bits (292), Expect = 7e-25
 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +    A  +K +R+D        W
Sbjct: 775  VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L ERL++V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951

[139][TOP]
>UniRef100_A5H2F4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nephroma parile
            RepID=A5H2F4_9LECA
          Length = 979

 Score =  117 bits (292), Expect = 7e-25
 Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+DAV IE Q  + +     + ++ +R+D     P   +
Sbjct: 765  KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQTMDIIACSDEQFERKFRVDVMDPRPEASI 824

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            S E  E    L  D  ++  + +E  Q++     LR++     DE++ +P+N+ R++ +A
Sbjct: 825  SPEFLEQANELAGDLEIQGYLDEEYEQLQVAREFLRKD---KRDEQMQLPINVIRILDSA 881

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K      + L   EVI +VR+L ERLVVV G D LS EAQ NATI+F + +R
Sbjct: 882  KTTFKIKD--GARSNLHPAEVIPQVRDLLERLVVVRGDDDLSREAQHNATILFKAQLR 937

[140][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
            V Y G+ RNS GD++QF+YGEDG+D  ++E Q  + +       +K YRID    ++ + 
Sbjct: 855  VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
               L  E  + ++ D  +++ + +E  Q++ D R LR+    NGD    +P+NL R+I N
Sbjct: 915  ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+   H+   + L++ EV+  V++LC +L+V+ G   L+ EAQ NAT++F  L+R
Sbjct: 973  AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029

[141][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  116 bits (291), Expect = 9e-25
 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
           V Y GTVRNS   +VQ  YGEDG+D + +E Q    +K + A  ++ +R D T ++    
Sbjct: 65  VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDELFMKK 124

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + S +    L   P   + +  E  Q++ED R+LR ++   GD K+ +P NL RL+WNAQ
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     +P    L    VI  VREL ++LV+V GSD +S +AQ NAT++ + L+R
Sbjct: 184 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 238

[142][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  116 bits (291), Expect = 9e-25
 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   +VQ  YGEDG+DAV +EGQ    ++   +  +  +++D T +     
Sbjct: 78  VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 137

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           L  EE   + L +  A+++A  +E  Q++ED R+LR ++   GD KV +P NL RLIWNA
Sbjct: 138 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 195

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F  +  +   T L    VI  +REL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 251

[143][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  116 bits (291), Expect = 9e-25
 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   +VQ  YGEDG+DAV +EGQ    ++   +  +  +++D T +     
Sbjct: 82  VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 141

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           L  EE   + L +  A+++A  +E  Q++ED R+LR ++   GD KV +P NL RLIWNA
Sbjct: 142 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 199

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F  +  +   T L    VI  +REL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 255

[144][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  116 bits (291), Expect = 9e-25
 Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ Y+ID   T ++  
Sbjct: 850  VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            + L  E  + +R D  +++ + +E  Q+ +D + LRE    NGD    +P+NL R+I NA
Sbjct: 910  ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  F+   +R   + L+++E++  V+ELC +L+VV G   L  EAQ NAT++F  L+R
Sbjct: 969  QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024

[145][TOP]
>UniRef100_Q0PQ09 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum
            RepID=Q0PQ09_9EURO
          Length = 1011

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 778  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 837

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   DE  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 838  QGRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYIKKAATSADEMMPLPMNVVRILNQ 897

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL+VV G D +S+EAQ NAT++  + +R
Sbjct: 898  ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 954

[146][TOP]
>UniRef100_Q0MVT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pallidulum
            RepID=Q0MVT4_9EURO
          Length = 1010

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 785  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKMFRVDLMEPKKLVW 844

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR  ++  T+ DE + +P+N+ R++  
Sbjct: 845  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRRFLRSIKKAATSADEMMPLPMNVQRILNQ 904

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L     I KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 905  ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 961

[147][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  116 bits (291), Expect = 9e-25
 Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176
            V Y GT RNS GD++QF+YGEDG+D  ++E Q  + +       ++ Y+ID   T ++  
Sbjct: 850  VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            + L  E  + +R D  +++ + +E  Q+ +D + LRE    NGD    +P+NL R+I NA
Sbjct: 910  ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  F+   +R   + L+++E++  V+ELC +L+VV G   L  EAQ NAT++F  L+R
Sbjct: 969  QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024

[148][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
            V Y G+ RNS GD++QF+YGEDG+D  ++E Q  + +       +K YRID    ++ + 
Sbjct: 855  VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
               L  E  + ++ D  +++ + +E  Q++ D R LR+    NGD    +P+NL R+I N
Sbjct: 915  ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ  F+   H+   + L++ EV+  V++LC +L+V+ G   L+ EAQ NAT++F  L+R
Sbjct: 973  AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029

[149][TOP]
>UniRef100_A9Q9S6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria polysticta
            RepID=A9Q9S6_9EURO
          Length = 999

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +    +  +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFVYGEDGLDGAHIESQRVDIIAMSDSAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYDQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQAGAP--SDLHPTYVIPKVQQLLDRLVIVRGEDPISLEAQNNATLLIKALLR 951

[150][TOP]
>UniRef100_A9Q9S5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria nigrescens
            RepID=A9Q9S5_9EURO
          Length = 999

 Score =  116 bits (291), Expect = 9e-25
 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDGAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951

[151][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
            RepID=A4RMP1_MAGGR
          Length = 1757

 Score =  116 bits (291), Expect = 9e-25
 Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD++QF+YGEDG+D + IE Q  ++L     K D  Y++D      P  L
Sbjct: 862  KYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPREL 921

Query: 186  SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359
            +A EY   +  DPAV+Q + +E   IK D +++RE       D  + +PLN+AR+I NA+
Sbjct: 922  NALEYGNEIFGDPAVQQLLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAK 981

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F     +   + L+ ++VI  V+   ER+VVV G D +S EA  N++I+F + +R
Sbjct: 982  KLFKIDDAQR--SDLKPQDVIPVVKGFLERMVVVPGDDPISKEANYNSSILFKAQLR 1036

[152][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  116 bits (290), Expect = 1e-24
 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            + Y GTVRNS   +VQ  YGEDG+DAV IE Q    LK      +K +++D   +     
Sbjct: 869  IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928

Query: 183  LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +  E+    + +D  ++  +  E  Q++ D  VLR  V   GD KV +P NLAR+IWNAQ
Sbjct: 929  ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+     P  T L   +V+  VR+L ++LV+V G D +S++AQ NATI+F++L+R
Sbjct: 988  KIFHVNTRAP--TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQANATILFNTLLR 1042

[153][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  116 bits (290), Expect = 1e-24
 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176
           V Y GTVRNS G +VQ  YG+DG+D + +E Q    +K   A  ++ +R D T D  M  
Sbjct: 82  VNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKPTNAVFERDFRTDLTDDNFMRN 141

Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            +  +   E   ++ A+E+ +  E AQ++ED R+LR ++   GD K+ +P NL RLIWNA
Sbjct: 142 SYTDSVIREIQESEDAIEK-VESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNA 199

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F     +P    L    VI  VRE+  +L++V G+D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFKVDTRKP--VDLSPLHVIDGVREISSKLIIVSGNDDISRQAQYNATLLMNILLR 255

[154][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  116 bits (290), Expect = 1e-24
 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K + A   + +++D T       
Sbjct: 74  VNYDGTVRNSLAQLIQLRYGEDGLDGMWVENQSMPSMKPNNALFKRDFKLDITDTKALKK 133

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           +  EE    L+++P   + +  E AQ++ED R+LR ++   GD K+ +P NL RLIWNAQ
Sbjct: 134 MYTEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQ 192

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VR++ ++L++V G D +S +AQ NAT++ + LVR
Sbjct: 193 KIFHVETRKP--TDLHPLRVIEGVRDMAKKLIIVGGEDRISKQAQYNATLLMNILVR 247

[155][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
            replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score =  116 bits (290), Expect = 1e-24
 Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 6/182 (3%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR++ G++VQF+YG+DGMD  ++E Q  E +K    K  + Y +D         
Sbjct: 759  VKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFRETYFVDAKESC---- 814

Query: 183  LSAE--EYEALR---TDPAVEQAMRDEMAQIKEDLRVLREEVL-TNGDEKVNIPLNLARL 344
            +S E  EY  ++       V++ + +E  Q+ ED RVLREE+        + +P+NL R+
Sbjct: 815  ISYELVEYHVVKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRV 874

Query: 345  IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
            IW AQ  F+    R   + L  + +I  V+EL ER VV+ G D LSVEAQ NAT++F  L
Sbjct: 875  IWKAQKLFD----RRKQSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATLLFQIL 930

Query: 525  VR 530
            VR
Sbjct: 931  VR 932

[156][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  116 bits (290), Expect = 1e-24
 Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GT RNS GD++QF+YGEDG+D   +E Q  + +    AK +K YRID    + P  
Sbjct: 809  VHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQSVDTIPGSDAKFEKRYRIDL---LDPSK 865

Query: 183  LSAEEY----EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
              +E      + ++ D  +++ +  E  Q+ +D + LRE    NGD    +P+NL R+I 
Sbjct: 866  SISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQ 925

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            NAQ  F+    R   + L++ E++  V+ LC +L+V+ G   L+ EAQ +AT++F  LVR
Sbjct: 926  NAQQIFHSGRQRA--SDLKLDEIVEGVKALCSKLLVIRGKSRLAKEAQEDATLLFQCLVR 983

[157][TOP]
>UniRef100_A9Q9S9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella
            striatula RepID=A9Q9S9_9EURO
          Length = 999

 Score =  116 bits (290), Expect = 1e-24
 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIALSDKAFEKQFRVDLMESKNLTW 834

Query: 183  LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E  + ++ D  V++   +E  Q++ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLELASEIQGDVDVQKLFDEEYDQLEEDRKFLRFIKQAATSSDEMMPLPMNIVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T FN +      + L    VI KV++L +RLVVV G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFNIQSGAA--SDLHPSYVIPKVKQLLDRLVVVRGDDRISIEAQENATLLIKAQLR 951

[158][TOP]
>UniRef100_A9Q9M5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pusillum
            RepID=A9Q9M5_9EURO
          Length = 999

 Score =  116 bits (290), Expect = 1e-24
 Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L     I KV++L +RLV+V G D +S+EAQ+NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQKNATLLIKALLR 951

[159][TOP]
>UniRef100_A5H275 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecidea fuscoatra
            RepID=A5H275_9LECA
          Length = 1016

 Score =  116 bits (290), Expect = 1e-24
 Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
            +Y GTVRNS GD+VQF+YGEDG+D V IE Q  + +     + ++ +R+D     P    
Sbjct: 785  KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEQKFRVDLMDPRPEASI 844

Query: 174  -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
             PD+L  E+   +  D  V+  + +E  Q++     LR+    + +E++ +P+N+ R+I 
Sbjct: 845  SPDYL--EQANEIAGDLEVQSFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 901

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             A+T F  K      + L   EVI +VREL ERLVVV G D LS+EAQ NAT++F + +R
Sbjct: 902  TAKTTFKIK--NGARSNLHPAEVIPQVRELLERLVVVRGDDELSIEAQHNATLLFKAQLR 959

[160][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  115 bits (289), Expect = 2e-24
 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            + Y GTVRNS   +VQ  YGEDG+DAV IE Q    LK      +K +++D   +     
Sbjct: 869  IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928

Query: 183  LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +  E+    + +D  ++  +  E  Q++ D  VLR  V   GD KV +P NLAR+IWNAQ
Sbjct: 929  ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+     P  T L   +V+  VR+L  +LV+V G D +S++AQ NATI+F++L+R
Sbjct: 988  KIFHVNTRAP--TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQANATILFNTLLR 1042

[161][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  115 bits (289), Expect = 2e-24
 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G ++Q  YGEDG+D + +E Q    +K   A  +K ++++ T +     
Sbjct: 82  VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQNMPTMKPTNALFEKEFKLELTDEKSLRT 141

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           L  E+   E   +  A+++A   E  Q++ED R+LR ++   GD K+ +P NL RLIWNA
Sbjct: 142 LYTEDVVRELQGSSDALKEA-EAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNA 199

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F+ +  +P  T L    VI  VREL  +L++V G D +S +AQ NAT++ + L+R
Sbjct: 200 QKIFHVETRKP--TDLNPIRVIEGVRELSSKLIIVSGEDRISKQAQYNATLLMNILIR 255

[162][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
            RepID=Q2PYR6_9FUNG
          Length = 1013

 Score =  115 bits (289), Expect = 2e-24
 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMPP 176
            +Y G++RNSQG +VQF+YGEDGMD   IE Q    L+      D+ Y++   D      P
Sbjct: 788  QYDGSIRNSQGHIVQFVYGEDGMDGCFIEKQKILSLRPSHKVFDRTYKVNVMDHGSIFRP 847

Query: 177  DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
              L     + +  + AV++ + DE A++ +D R++RE +L +G +K  +PLN+ RLI  A
Sbjct: 848  GSLDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIA 907

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCE-RLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  FN    RP  + L   E++  V+ L E R+ V+ G D LSVEAQ NAT++F   +R
Sbjct: 908  QQTFNIDVRRP--SNLNPVEIVNLVKSLTESRIPVIRGEDQLSVEAQTNATLLFQIHLR 964

[163][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  115 bits (289), Expect = 2e-24
 Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GT RNS GD++QFLYGEDG+D  ++E Q  + +        K Y +D   +     
Sbjct: 851  VHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIK 910

Query: 183  LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
                EY A +  D  +++ +  E  Q+  D + LRE V  NGD    +P+NL R+I NAQ
Sbjct: 911  PDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQ 970

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+    R   + L + E+I  VR+LC++L V+ G + L  EAQ+NAT +F  LVR
Sbjct: 971  QIFHL--DRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVR 1025

[164][TOP]
>UniRef100_A9X991 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia
            caesiocinerea RepID=A9X991_9LECA
          Length = 989

 Score =  115 bits (289), Expect = 2e-24
 Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D   IE Q  + +    A+ +K +R+D     P   +
Sbjct: 768  KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825

Query: 186  SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SA+  E  +T   D  V+  + +E  Q+K     LR     + +E+  +P+N+ R++ +A
Sbjct: 826  SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K   P  + L   EVI +VRE+  RLVVV G D LS E Q NATI+F + +R
Sbjct: 885  KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940

[165][TOP]
>UniRef100_A9X990 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia cinerea
            RepID=A9X990_9LECA
          Length = 989

 Score =  115 bits (289), Expect = 2e-24
 Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D   IE Q  + +    A+ +K +R+D     P   +
Sbjct: 768  KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825

Query: 186  SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SA+  E  +T   D  V+  + +E  Q+K     LR     + +E+  +P+N+ R++ +A
Sbjct: 826  SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K   P  + L   EVI +VRE+  RLVVV G D LS E Q NATI+F + +R
Sbjct: 885  KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940

[166][TOP]
>UniRef100_A9Q9N3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lachneum
            RepID=A9Q9N3_9EURO
          Length = 989

 Score =  115 bits (289), Expect = 2e-24
 Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPRKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR   +  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYINKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQT F  K      + L    VI KV++L ERLV+V G+D +S+EAQ NAT++  + +R
Sbjct: 895  AQTTF--KIQSGAASDLHPSHVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 951

[167][TOP]
>UniRef100_A9Q9L6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium
           cinereum RepID=A9Q9L6_9EURO
          Length = 622

 Score =  115 bits (289), Expect = 2e-24
 Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 398 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMESKKLVW 457

Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
               E+   +  D  V++   +E  Q+ ED R LR  ++  T  DE + +P+N+ R++  
Sbjct: 458 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATTSDEMMPLPMNILRILNQ 517

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           A+T F  +   P  + L    VI KV++L +RLVVV G D +S+EAQ NAT++  + +R
Sbjct: 518 ARTTFKIQLGSP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 574

[168][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  115 bits (288), Expect = 2e-24
 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179
           V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K + A  ++ +R D T ++    
Sbjct: 81  VNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDEVFMKK 140

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + S +    L       + +  E  Q++ED R+LR ++   GD K+ +P NL RL+WNAQ
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     +P    L    VI  VREL ++LV+V GSD +S +AQ NAT++ + L+R
Sbjct: 200 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 254

[169][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
          Length = 254

 Score =  115 bits (288), Expect = 2e-24
 Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V+Y  T+RNS G +VQ  YGEDG+D   +EGQ    L+      D+ Y    T +     
Sbjct: 30  VKYDATIRNSNGQLVQLRYGEDGIDGAHMEGQKLNSLELGDYAFDRRYHFSYTNERQLKK 89

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           ++S +    L  +P  +    +E A++ +D  +LR E+  +G+ KV +P NL+R+IWNAQ
Sbjct: 90  FISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQ 148

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F  K +    + L   +VI  V ELC++LV+V G D +S EAQ NAT++ +  +R
Sbjct: 149 KTF--KINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEAQYNATLLINIHLR 203

[170][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  115 bits (288), Expect = 2e-24
 Identities = 65/178 (36%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D + +EGQM   +K   A  +K +++D + +     
Sbjct: 78  VNYDGTVRNSLAQLIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDERSLRR 137

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           + +E+   + L +  A+++ + +E  Q++ED R+LR ++   G+ KV +P NL RLIWNA
Sbjct: 138 VYSEDVVRDLLGSSSALKE-VEEEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNA 195

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F  +  +   T L    V+  VR+L ++L++V+G D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKVETRKV--TALNPLRVVQGVRDLSKKLIIVMGDDRISKQAQYNATLLVNILIR 251

[171][TOP]
>UniRef100_A1YIC3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entophlyctis
            confervae-glomeratae RepID=A1YIC3_9FUNG
          Length = 1013

 Score =  115 bits (288), Expect = 2e-24
 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRN+ G++VQF YGEDGMD  ++E Q  + +        K Y++D   D      
Sbjct: 784  QYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNMGTSDQAFVKMYKVDMASDKHKFRN 843

Query: 186  SAEEYEALRTDPAVEQAMR--DEMAQIKEDLRVLREEVLTNGDEKV-NIPLNLARLIWNA 356
            +  E++        E   R   E  Q++ D R LR+E+          +PLN+ R+IWNA
Sbjct: 844  NVLEFKISEDLMKTEAQARFDAEFEQLEHDRRTLRQEIFAGSSTTAWPLPLNIRRMIWNA 903

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            Q  FN    +P  T L    V+ +V+ L ++L+VV GSD LS E Q NAT++FH L+R
Sbjct: 904  QNAFNIDRTKP--TNLHPITVMNEVQNLLDKLIVVRGSDELSKEGQDNATLLFHILIR 959

[172][TOP]
>UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata
           RepID=O02478_9ARAC
          Length = 194

 Score =  115 bits (287), Expect = 3e-24
 Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GT+RNS G V+QF YGEDG+D   +E Q    LK      +K ++ D T +     
Sbjct: 12  VTYDGTIRNSTGQVIQFRYGEDGLDGCCVEFQNLPTLKPSNKAFEKRFKFDATNERYLRR 71

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
           +  E+   E + +  A+ +  R E  ++KED ++LR  V T GD KV +P NL+R+IWNA
Sbjct: 72  IFTEDVVRELMGSSTALSELER-EWERLKEDRKMLR-LVFTTGDSKVVMPCNLSRMIWNA 129

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F+     P  + L   +VI  V +L ++L++V G D LS++A  NAT++F SL+R
Sbjct: 130 QKIFHVNLRSP--SDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQANDNATLLFRSLLR 185

[173][TOP]
>UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus
           RepID=C3U0C3_9EURO
          Length = 618

 Score =  115 bits (287), Expect = 3e-24
 Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V+Y GTVRNS GDVVQF+YGEDG+D   I+ Q  + ++    K  K +R+D    M P+W
Sbjct: 397 VKYDGTVRNSLGDVVQFVYGEDGLDGAHIKNQRVDVIRCSNDKFKKRFRVDL---MDPEW 453

Query: 183 LSA----EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
                  E+   ++ D  V++ + +E  Q+ +D   LR  V    +E + +P+N+ R++ 
Sbjct: 454 TLGPEVLEQANEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILE 512

Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           +A+T F  +      + L   EVI +VR L +RLV+V G+D +S EAQ NAT++F + +R
Sbjct: 513 SAKTTFRIR--EGTISDLHPAEVIPQVRALLDRLVIVRGNDDISREAQENATLLFKAHLR 570

[174][TOP]
>UniRef100_A9Q9T3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria viridula
            RepID=A9Q9T3_9EURO
          Length = 999

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +    A  +K +R+D        W
Sbjct: 775  VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+++ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMDVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L ERL++V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951

[175][TOP]
>UniRef100_A9Q9M3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon
            petrolepideum RepID=A9Q9M3_9EURO
          Length = 964

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 766  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 825

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 826  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 885

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L     I KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 886  ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 942

[176][TOP]
>UniRef100_A9Q9M2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon adscendens
            RepID=A9Q9M2_9EURO
          Length = 999

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L     I KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951

[177][TOP]
>UniRef100_A9Q9M1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum
            RepID=A9Q9M1_9EURO
          Length = 999

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   DE  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL+VV G D +S+EAQ +AT++  + +R
Sbjct: 895  ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQEDATLLIKAQLR 951

[178][TOP]
>UniRef100_A9Q9M0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon luridum
            RepID=A9Q9M0_9EURO
          Length = 999

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   DE  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDDEYEQLTEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL+VV G D +S+EAQ N T++  + +R
Sbjct: 895  ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENPTLLIKAQLR 951

[179][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus
            RepID=A1YIC4_9FUNG
          Length = 1003

 Score =  115 bits (287), Expect = 3e-24
 Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS G +VQF YGEDGMD  ++E Q F+ +  +    +K YR+D   D      
Sbjct: 776  QYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFEKKYRVDIA-DPRYKLT 834

Query: 186  SAEEYEA--LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            S ++  A  L  DP  +  +  E   + E  R+LRE+V  +GD +  +P+NL RLI NA 
Sbjct: 835  SLDQKIAGDLLNDPGSQSLLDGEFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANAT 894

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+    +P    L    VI  V+ L ++LVVV G D LS+ AQ+NAT++F  L++
Sbjct: 895  RSFHIDRRKP--VDLNPTVVIQGVQMLLDKLVVVRGYDTLSILAQQNATLLFQILLK 949

[180][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  114 bits (286), Expect = 3e-24
 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   +VQ  YGEDG+D + +E Q    +K + A  ++ +R D T D   + 
Sbjct: 65  VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDRFLEN 124

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
              E+   E   +  A+E+ +  E AQ+ ED R+LR ++   GD K+ +P NL RL+WNA
Sbjct: 125 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 182

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F     +P    L    VI  VREL ++L++V G+D +S +AQ NAT++ + L+R
Sbjct: 183 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 238

[181][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  114 bits (286), Expect = 3e-24
 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
           V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K + +  +K +++D T  RD+  
Sbjct: 75  VNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFEKQFKLDLTDERDLRR 134

Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            +  +   E L +  A+ + +  E  Q++ED R+LR ++   GD KV++P NL RLIWNA
Sbjct: 135 IYXDSVVRELLGSADALRE-VESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNA 192

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+    +P    L    V+  VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 193 HKIFHVDLKKP--VDLNPLRVVEGVRELNKKLVIVSGEDRISKQAQYNATLLMNILLR 248

[182][TOP]
>UniRef100_A9Q9R7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria hydrela
            RepID=A9Q9R7_9EURO
          Length = 999

 Score =  114 bits (286), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDHAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR  ++  T  DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL++V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFKIQSGCP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951

[183][TOP]
>UniRef100_A9Q9M8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocatapyrenium
            rhizinosum RepID=A9Q9M8_9EURO
          Length = 999

 Score =  114 bits (286), Expect = 3e-24
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +    A  +K + +D        W
Sbjct: 775  VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFHVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPSYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951

[184][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  114 bits (285), Expect = 4e-24
 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K   A  +K +++D   +     
Sbjct: 78  VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 137

Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
              E  + +R      +A+R+   E AQ++ED R+LR ++   GD K+ +P NL RL+WN
Sbjct: 138 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 194

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           AQ  F+ +  +P  T L    VI  VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 195 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 251

[185][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score =  114 bits (285), Expect = 4e-24
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G ++Q  YGEDG+D + +E Q    +K      +K +++D   +     
Sbjct: 72  VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQHMPTMKPTNIVFEKEFKLDVADEKSLRK 131

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           L  E+    L+      +    E AQ++ED R+LR ++   GD K+ +P NL RLIWNAQ
Sbjct: 132 LYTEDVVRELQGSTEALKESEGEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 190

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  +REL  +LV+V G D +S +AQ NAT++ + L+R
Sbjct: 191 KIFHVETRKP--TDLNPLRVIEGIRELSTKLVIVSGEDRISQQAQYNATLLMNILIR 245

[186][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=A9QMQ5_9BILA
          Length = 276

 Score =  114 bits (285), Expect = 4e-24
 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K   A  +K +++D   +     
Sbjct: 71  VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 130

Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
              E  + +R      +A+R+   E AQ++ED R+LR ++   GD K+ +P NL RL+WN
Sbjct: 131 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 187

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           AQ  F+ +  +P  T L    VI  VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 188 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 244

[187][TOP]
>UniRef100_A9Q9P1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii
            RepID=A9Q9P1_9EURO
          Length = 999

 Score =  114 bits (285), Expect = 4e-24
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G+VVQF+YGEDG+D   IE Q  + +    A  +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR   +   + DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI KVR+L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[188][TOP]
>UniRef100_A9Q9P0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii
            RepID=A9Q9P0_9EURO
          Length = 989

 Score =  114 bits (285), Expect = 4e-24
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G+VVQF+YGEDG+D   IE Q  + +    A  +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR   +   + DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI KVR+L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[189][TOP]
>UniRef100_A9Q9N0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis
            cinerascens RepID=A9Q9N0_9EURO
          Length = 999

 Score =  114 bits (285), Expect = 4e-24
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAFEKQFRVDLMEPTKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++    E  Q+ ED R LR  ++  T  DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDVEYEQLVEDRRFLRYIKQAATTSDEMMPLPMNILRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLVVV G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISLEAQENATLLLKAQLR 951

[190][TOP]
>UniRef100_A9Q9M7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heteroplacidium
            imbricatum RepID=A9Q9M7_9EURO
          Length = 999

 Score =  114 bits (285), Expect = 4e-24
 Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR   +  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIRKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL++V G D +S+EAQ NAT++    +R
Sbjct: 895  ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKGQLR 951

[191][TOP]
>UniRef100_A7J5B0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Flavoparmelia caperata
            RepID=A7J5B0_9LECA
          Length = 1008

 Score =  114 bits (285), Expect = 4e-24
 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D V IE Q  + +     + ++ +R+D     P   +
Sbjct: 777  KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDVILCSTKQFERKFRVDLMDSQPETSI 836

Query: 186  SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            S E  E       D   ++ + DE  Q+++D RV   ++  +  E + +PLN+ R++  A
Sbjct: 837  SPEFLEQANEMIGDVETQKHLDDEYRQLEKD-RVELRKIRQDDTENLQLPLNVLRILETA 895

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K      + L   EVI +V+EL +RLVVV G+D LS EAQ NAT++F   +R
Sbjct: 896  KTTFKIK--TGARSNLHPAEVIPQVQELLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 951

[192][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score =  114 bits (284), Expect = 6e-24
 Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y  T RNS G+++QFLYGEDGM    IEGQ  E L+ D  +++K ++++   R+    
Sbjct: 770  VQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMNLDDRNFGEG 829

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +L  +    +R    +   +  E  Q+ +D   LR E++ +G+  V++P+NL RLIWNAQ
Sbjct: 830  FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              +     +P  + L+   ++  V  L  +LVV+ G D LS EAQ NAT +F+  +R
Sbjct: 890  KIYKVDTSKP--SDLRPDIILQGVELLSTQLVVIAGEDTLSREAQENATRLFNIHLR 944

[193][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  114 bits (284), Expect = 6e-24
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179
            V+Y  TVRNS GDV+QFLYGEDGMD   +E Q  + LK     +   Y+ D  +      
Sbjct: 779  VKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGVVLKYQHDYDSPSWGEG 838

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            W+     +A+   P  ++ +  E  QI  D R+LRE++   GD++  +P+NL R+I NAQ
Sbjct: 839  WIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQ 898

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+  P +   + L   +++  +  L ERLVV+ G D +S EAQ NA ++F  L+R
Sbjct: 899  KIFHLGPKKV--SDLDPCQIVEDLGNLIERLVVIPGQDDISKEAQANAILLFSILLR 953

[194][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  114 bits (284), Expect = 6e-24
 Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
            V Y GTVRN+   ++Q  YGEDG+D   IE Q    LK       + +R D   +     
Sbjct: 861  VHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEKRLKQ 920

Query: 180  WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +L      ++ TD  V++ ++ E  Q+ +D   +R  +L NGD +V +P+NL RLIWNAQ
Sbjct: 921  YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+  P +   + L   +VI  V EL  +LV+V G D +S +AQ NAT++F+ L+R
Sbjct: 980  KIFHVDPRKS--SDLHPMKVIDDVCELSRKLVIVHGEDRISKQAQENATLLFNILLR 1034

[195][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score =  114 bits (284), Expect = 6e-24
 Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D + +     
Sbjct: 64  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 123

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + + +    L+      + +  E AQ++ED R+LR ++   G+ K+ +P NL RLIWNAQ
Sbjct: 124 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 182

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 183 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 237

[196][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  114 bits (284), Expect = 6e-24
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D   +EGQ    +K   A  +K +++D + +     
Sbjct: 65  VNYDGTVRNSLAQMIQLRYGEDGLDGTWVEGQFMPTMKLTNAAFEKQFKLDLSDEKALRR 124

Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
             +E+     L +  A+++ + +E  Q++ED R+LR ++   GD KV +P NL RLIWNA
Sbjct: 125 GYSEDIVRNLLGSSTALKE-VEEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 182

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F  +  +P  + L    VI  VRE+ ++L++V G D +S  AQ NAT++ + LVR
Sbjct: 183 QKIFKVETRKP--SSLNPLRVIEGVREMSKKLIIVCGDDRISKHAQYNATLLMNILVR 238

[197][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  114 bits (284), Expect = 6e-24
 Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D + +     
Sbjct: 78  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 137

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + + +    L+      + +  E AQ++ED R+LR ++   G+ K+ +P NL RLIWNAQ
Sbjct: 138 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 196

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL E+LV+V G D +S +AQ NAT++ + L+R
Sbjct: 197 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 251

[198][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0U9K8_PHANO
          Length = 1720

 Score =  114 bits (284), Expect = 6e-24
 Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 5/181 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPD- 179
            V+Y GTVRNS GD+++F+YGEDG+D   IE Q  + +    AK +K +++D      P  
Sbjct: 868  VKYDGTVRNSLGDIIEFIYGEDGLDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQI 927

Query: 180  ----WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347
                   A E++    D  +++ + +E  QIK D   LR  +  +  ++  +PLN+AR+I
Sbjct: 928  PTSKLAGANEFQG---DVDIQRHLDEEFDQIKIDREYLRTVIGQDDSQQFQLPLNIARMI 984

Query: 348  WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
             +AQ +F  K  +   + L   EV+ +VR+L + LVV+ G+D LSVEAQ +AT +F   +
Sbjct: 985  ESAQMRFGIKKGQ-NVSDLHPTEVVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHL 1043

Query: 528  R 530
            R
Sbjct: 1044 R 1044

[199][TOP]
>UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus
            RepID=C3U0B2_9EURO
          Length = 993

 Score =  114 bits (284), Expect = 6e-24
 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y GTVRNS GDVVQFLYGEDG+D   IE Q  + +K    K  + +R+   D  R + 
Sbjct: 772  VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDIIKCSDEKFYERFRVDLMDPERSLG 831

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P+ L  E+   +  D  V++ + +E  Q+++D   LR  V    +E + +P+N+ R++ +
Sbjct: 832  PEVL--EQATEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLPINVQRILES 888

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +      + L   EVI +V+ L +RLVVV G+D +S EAQ NAT++F + +R
Sbjct: 889  AKTTFRIRD--GNISDLHPSEVIPQVQALLDRLVVVRGNDEISREAQDNATLLFKAQLR 945

[200][TOP]
>UniRef100_A9Q9R1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria dolosa
            RepID=A9Q9R1_9EURO
          Length = 999

 Score =  114 bits (284), Expect = 6e-24
 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       ++ +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFERQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   DE  Q+ ED R LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDDEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI KV++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQSGALSDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[201][TOP]
>UniRef100_A9Q9M4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon psorodeum
            RepID=A9Q9M4_9EURO
          Length = 999

 Score =  114 bits (284), Expect = 6e-24
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQALEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L     I KV++L +RLV+V G D +S+EAQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGSP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951

[202][TOP]
>UniRef100_A7J5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gyalideopsis vulgaris
            RepID=A7J5B2_9LECA
          Length = 1015

 Score =  114 bits (284), Expect = 6e-24
 Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 6/181 (3%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D   IE Q  + +     K  + +R++   D P   +
Sbjct: 784  KYDGTVRNSLGDIVQFIYGEDGLDGSFIEAQKVDIIACSDQKFQRMFRVNLLDDDPETSI 843

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQI---KEDLRVLREEVLTNGDEKVNIPLNLARLI 347
            S E  E   ALR D   ++ + +E  Q+   +E LR+ R++    G+E++ +P+N+ R++
Sbjct: 844  SPEFLESATALRGDLQAQEHLEEEYKQLLAARESLRINRQD----GNEQLQLPINVIRIL 899

Query: 348  WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527
              A+T F  K      + L   EVI +V +L +RLVV+ G D LS E Q NAT++F + +
Sbjct: 900  DTAKTTFKIKD--GARSNLHPAEVIPQVNQLLDRLVVIRGDDILSKEGQHNATLLFKAQL 957

Query: 528  R 530
            R
Sbjct: 958  R 958

[203][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  113 bits (283), Expect = 8e-24
 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176
           V Y GTVRNS   +VQ  YGEDG+D + +E Q    +K + A  ++ +R D T  R +  
Sbjct: 78  VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDHRFLEN 137

Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            +      E   +  A+E+ +  E AQ+ ED R+LR ++   GD K+ +P NL RL+WNA
Sbjct: 138 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 195

Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           Q  F     +P    L    VI  VREL ++L++V G+D +S +AQ NAT++ + L+R
Sbjct: 196 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 251

[204][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  113 bits (283), Expect = 8e-24
 Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D + +     
Sbjct: 75  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 134

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + + +    L+      + +  E  Q++ED R+LR ++  NG+ K+ +P NL RL+WNAQ
Sbjct: 135 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 193

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL ++L++V G D +S +AQ NAT++ + LVR
Sbjct: 194 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGEDRISKQAQYNATLLMNILVR 248

[205][TOP]
>UniRef100_Q0PQ14 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladonia caroliniana
            RepID=Q0PQ14_9LECA
          Length = 1016

 Score =  113 bits (283), Expect = 8e-24
 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
            +Y GTVRNS GD+VQF+YGEDG+DAV IE Q  + +     + +K +++D     P    
Sbjct: 785  KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDKQFEKKFKVDLMDPKPDTSI 844

Query: 174  -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
             PD+L  E+   +  D   +Q + DE  ++      LR     + +E++ +PLN+ R++ 
Sbjct: 845  SPDFL--EQANEMIGDLETQQYLDDEYNKLLAAREFLR-STRADDNEQLQLPLNVIRILD 901

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             A+T F  K      + LQ  EV+TKV EL ++LV+V G D LS E Q NAT++F + +R
Sbjct: 902  TAKTTFKIK--NGARSNLQPVEVVTKVNELLDKLVIVRGDDELSREGQHNATLLFKAQLR 959

[206][TOP]
>UniRef100_A9Q9N2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria chiloensis
            RepID=A9Q9N2_9EURO
          Length = 999

 Score =  113 bits (283), Expect = 8e-24
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIISMSNDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR   +  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLEQAPEIHGDIDVQKLFDEEYEQLVEDRKFLRFINKAATSSDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQT F  +P     + L    VI KV++L ERLV+V G D +S EAQ NAT++  + +R
Sbjct: 895  AQTTFKIQPGAA--SDLHPSYVIPKVKQLLERLVIVRGEDKISREAQDNATLLIKAQLR 951

[207][TOP]
>UniRef100_A9Q9L7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium daedaleum
            RepID=A9Q9L7_9EURO
          Length = 999

 Score =  113 bits (283), Expect = 8e-24
 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T  DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRYIKKAATTADEMMPLPMNILRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLVVV G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFKIQLGCP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 951

[208][TOP]
>UniRef100_A5H2E9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia dialyta
            RepID=A5H2E9_9LECA
          Length = 994

 Score =  113 bits (283), Expect = 8e-24
 Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D   IE Q  + +       ++ +R+D   + P   +
Sbjct: 777  KYDGTVRNSLGDIVQFIYGEDGLDGTAIEQQRLDIILCSNRDFERNFRVDLMENDPDTSI 836

Query: 186  SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD---EKVNIPLNLARLIWNA 356
            SAE  +   T+ A    +++ + Q  E L+  R  +  N     E++ +PLN+AR+I  A
Sbjct: 837  SAEILDQ-ATEIAGNVEVQEHLDQEYEQLKAARTFLRKNKQDDIEQLQLPLNVARIIDTA 895

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F+ K    G + L   EVI +V +L +RL+VV GSD LS+E+Q NAT++F + +R
Sbjct: 896  RTTFHIK--SGGRSNLHPAEVIPQVNDLLDRLIVVRGSDPLSLESQHNATLLFKAQLR 951

[209][TOP]
>UniRef100_A5H288 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia stillingiana
            RepID=A5H288_9LECA
          Length = 1002

 Score =  113 bits (283), Expect = 8e-24
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D   IE Q  + +    A  +  +R+D   + P   +
Sbjct: 785  KYDGTVRNSLGDIVQFIYGEDGLDGAAIEPQRVDIIICSDAHFEHMFRVDVMENDPKTSI 844

Query: 186  SA---EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SA   E+   +  +  V+Q +  E  Q+K     LR +   + +E++ +PLN+ R++  A
Sbjct: 845  SADILEQATEIAGNVEVQQHLDQEWEQLKAAREFLR-KTRQDDNEQLQLPLNVVRILDTA 903

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T FN K  +   + L   EVIT+V+EL   L+VV G D LS+E+Q NAT++F + +R
Sbjct: 904  RTTFNIK--QGSRSDLHPVEVITEVKELLGELIVVRGDDPLSLESQHNATLLFKAQLR 959

[210][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  113 bits (283), Expect = 8e-24
 Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GT RNS GDV+QF+YGEDG+DA  +E Q  + +    A  +K YR+D   +     
Sbjct: 773  VHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFEKKYRVDLMDEKKSIR 832

Query: 183  LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
                EY   +  D  +++ + +E  Q+ +D   LR  V  +G+    +P+N+ R++ NAQ
Sbjct: 833  PDVVEYGSEILGDIKLQKILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQ 892

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+   ++   + L ++E++  V+ELC++  VV G  G   EA+ N+T++F  L+R
Sbjct: 893  QIFHVDRYKA--SDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARENSTLLFQCLIR 947

[211][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  113 bits (282), Expect = 1e-23
 Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D T +     
Sbjct: 82  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNAMFEKEFKLDLTDEKTLRK 141

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + + E    L+      + +  E  Q++ED R+LR ++   GD K+ +P NL RLIWNAQ
Sbjct: 142 FYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 200

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  ++EL  +L++V G D +S +AQ NAT++ + L+R
Sbjct: 201 KIFHVETRKP--TDLNPLRVIDGIKELSSKLIIVSGEDRISQQAQYNATLLMNILIR 255

[212][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  113 bits (282), Expect = 1e-23
 Identities = 67/176 (38%), Positives = 100/176 (56%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   +VQ  YGEDG+D + +E Q    +K   A  ++ +++D   +     
Sbjct: 75  VNYDGTVRNSMAQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFEREFKLDLGDERMLRK 134

Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
           +  +E       P   + +  E AQ++ED R+LR ++   GD KV +P NL RLIWNAQ 
Sbjct: 135 IYTDEVVRELQTPEALKEVESEWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQK 193

Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            F+ +  +   T L    VI  VREL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 194 VFHVETRKQ--TELNPLRVIEGVRELSKKLVIVGGDDRISKQAQFNATLLMNILLR 247

[213][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QMG2_9BILA
          Length = 273

 Score =  113 bits (282), Expect = 1e-23
 Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K   A  ++ +++D T +     
Sbjct: 68  VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQSMPSMKPSNALFERDFKLDLTDEKTLKK 127

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
              E+    L+  P   + + +E AQ++ED R+LR ++ + G+ K  +P NL RLIWNAQ
Sbjct: 128 CYTEDLIRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQ 186

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +   P    L    VI  VR L E+L++V G D +S +AQ NAT++ + L+R
Sbjct: 187 KIFHVEKREP--VCLNPLNVIRGVRSLSEKLIIVGGEDRISKQAQYNATLLMNILLR 241

[214][TOP]
>UniRef100_Q0PPZ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lichinella iodopulchra
            RepID=Q0PPZ6_9PEZI
          Length = 1020

 Score =  113 bits (282), Expect = 1e-23
 Identities = 65/178 (36%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD++QF+YGEDG+D V++E Q  + +    ++ +  +RID     P   +
Sbjct: 791  KYDGTVRNSLGDIIQFVYGEDGLDGVQVEEQRVDIIACSDSQFEDKFRIDLMDSNP--GI 848

Query: 186  SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            SAE  E    +  D  V+  + +E  Q+K D   LR +  T+ +EK+++P N+ R+I  A
Sbjct: 849  SAEVLEQASEIIGDIKVQHYLDEEWEQLKADREFLRSQ-STDDNEKMHLPFNVIRIIETA 907

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            ++ F  K +  G + L   +VI  V++L  RL+++ G D LS+E+Q NAT++F   +R
Sbjct: 908  KSTFKLKDN--GRSDLHPVDVIPAVKDLLSRLIIIRGDDPLSIESQENATLLFKIQLR 963

[215][TOP]
>UniRef100_A9Q9U1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verruculopsis
            poeltiana RepID=A9Q9U1_9EURO
          Length = 988

 Score =  113 bits (282), Expect = 1e-23
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 764  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 823

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 824  QDRLEQASEIHGDVDVQKLFDEEYDQLVEDRQFLRSIKKAATSADEMMPLPMNVVRILDQ 883

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 884  ARTTFAIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940

[216][TOP]
>UniRef100_A9Q9P7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Staurothele fissa
            RepID=A9Q9P7_9EURO
          Length = 999

 Score =  113 bits (282), Expect = 1e-23
 Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                ++   +  D  V++   +E  Q+ ED R LR  ++  T  DE + +P+N+ R++  
Sbjct: 835  QDRLDQASEIHGDVDVQKMFDEEYEQLVEDRRFLRRIKKAATTSDEMMPLPMNIVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI KV++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQSGATSDLHASYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[217][TOP]
>UniRef100_A5H295 DNA-directed RNA polymerase (Fragment) n=1 Tax=Protopannaria
            pezizoides RepID=A5H295_9LECA
          Length = 1016

 Score =  113 bits (282), Expect = 1e-23
 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D V IE Q  + +     + ++ YR+D     P   +
Sbjct: 785  KYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFERKYRVDVMDPRPEATI 844

Query: 186  SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            S E  E    L  D  V+    +E  Q++     LR+    + D+ + +P+N+ R++  A
Sbjct: 845  SPEFLEQAHDLTGDSEVQAHFDEEYEQLQAARDFLRKNKQDDNDQ-LQLPINVIRILDTA 903

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K      + L   EVI +VR+L ERL+VV G D LS EAQ NAT++F + +R
Sbjct: 904  KTTFKIKDGTR--SNLHPTEVIPQVRDLLERLIVVRGDDDLSREAQHNATMLFKAQLR 959

[218][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  112 bits (281), Expect = 1e-23
 Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT----TRDM 170
            V Y GT+RNS   ++Q  YGEDGM   RIEGQ    +K   A  ++ +  D     T   
Sbjct: 871  VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNGTAMR 930

Query: 171  PPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
              + L+ +    + +D     A+ +E  Q+K+D  +LR  +  NG++KVN+P+ L+RLIW
Sbjct: 931  LKNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIW 989

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            N+Q  F  K +    T L   +VI  +++L +RL+VV G D LS EAQ NAT++F   +R
Sbjct: 990  NSQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1047

[219][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  112 bits (281), Expect = 1e-23
 Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +R+D   +     
Sbjct: 82  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPTNAVFEKDFRLDLADERTLKS 141

Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
              E     L+  P   + +  E  Q++ED R+LR ++   GD KV +P NL RLIWNAQ
Sbjct: 142 CYEEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQ 200

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F     +P  T L    VI  VRE+ ++L++V GSD +S +AQ NAT++ + L+R
Sbjct: 201 KIFKVDLRKP--TNLSPLHVIEGVREVSKKLIIVSGSDDISKQAQYNATLLMNILLR 255

[220][TOP]
>UniRef100_Q5EM00 RNA polymerase II largest subunit (Fragment) n=1 Tax=Grifola
           sordulenta RepID=Q5EM00_9AGAR
          Length = 259

 Score =  112 bits (281), Expect = 1e-23
 Identities = 74/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V Y GTVRNS GD++QF+YGEDGMD   IE Q  E    + A+ +  YR+D T D    +
Sbjct: 35  VCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALNNAQFEHDYRVDVT-DPSGGF 93

Query: 183 LSAEEYEALRTDPAVEQAMRD-EMAQIKEDLRVLREEVL--TNGDEKVNIPLNLARLIWN 353
           L       L       QA  D E AQ+ ED R+LRE +   T+      +P+NL R++ N
Sbjct: 94  LPGVLQVGLDDSSVELQAKLDEEFAQLSEDRRLLREFIFPRTDPSSPRYLPVNLQRIVQN 153

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           A   F+    +P  + L+   +I  VRELC RLVVV G   LS E Q NAT++F   +R
Sbjct: 154 AMQIFHIDRRKP--SDLEPGYIIDSVRELCSRLVVVRGESPLSQEGQENATLLFRMHIR 210

[221][TOP]
>UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis
            RepID=Q2PYS8_9FUNG
          Length = 809

 Score =  112 bits (281), Expect = 1e-23
 Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM---P 173
            ++Y GTVRN+ G+++QF YGEDGMDAV+IE Q  + ++ +  K +  Y++D    M    
Sbjct: 586  IKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVDFLNPMYGIS 645

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
             + L  E  E +   P +  A+  E  Q+ ED  VLR E+  +GD    +PLN+ R+IWN
Sbjct: 646  ENVLQKEIIEEILATPVMLIALDKEYRQLTEDRNVLR-EIFKSGDSSWPLPLNIKRMIWN 704

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQ+ F     +P  + L   ++   V++ C++L      D LS E  RNAT++F  L+R
Sbjct: 705  AQSLFKIDFRKP--SDLHPIKIYKDVKDFCDKLNKNSEKDSLS-EQDRNATMLFQILIR 760

[222][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YI77_NECH7
          Length = 1750

 Score =  112 bits (281), Expect = 1e-23
 Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            RY GTVRNS GDVVQFLYGEDG+DA+ IE Q    L    A     YR+D     PP+W 
Sbjct: 863  RYDGTVRNSLGDVVQFLYGEDGLDAMCIEKQKLGILNMSNAAFKAKYRLDLAN--PPEWF 920

Query: 186  SAE-EYEALRTDPAVEQAMRD-EMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNA 356
             ++ E+    T      A+ D E   + +D RV+R+       +E + +PLN+ R+I +A
Sbjct: 921  KSDYEFGNELTGDRPSMALLDTEWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESA 980

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +  FN K +    + L+  +VI  V+ L + + +V G+D +SVEA  NATI+F  L+R
Sbjct: 981  KRVFNVKAN--DRSNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADANATILFKGLLR 1036

[223][TOP]
>UniRef100_A9Q9R9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria lecideoides
            RepID=A9Q9R9_9EURO
          Length = 977

 Score =  112 bits (281), Expect = 1e-23
 Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 764  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSNEAFEKQFRVDLMEPKKLVW 823

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ +D + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 824  QDRLEQASEIHGDVDVQKLFDEEYDQLVDDRQFLRSIKKAATSADEMMPLPMNVVRILNQ 883

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 884  ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940

[224][TOP]
>UniRef100_A9Q9N8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium sp. AFTOL
            2237 RepID=A9Q9N8_9EURO
          Length = 978

 Score =  112 bits (281), Expect = 1e-23
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 766  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 825

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR   +  T+ DE + +P+N+ R++  
Sbjct: 826  HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRSFLRYINKAATSSDEMMPLPMNVVRILNQ 885

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQT F  K      + L    VI KV++L ERLV+V G+D +S+EAQ NAT++  + +R
Sbjct: 886  AQTTF--KIQSGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 942

[225][TOP]
>UniRef100_A9Q9N6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium arboreum
            RepID=A9Q9N6_9EURO
          Length = 989

 Score =  112 bits (281), Expect = 1e-23
 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR   +  T+ DE + +P+N+ R++  
Sbjct: 835  HDRLEQASEIHGDIDVQKLFDEEYEQLAEDRRFLRYINKAATSSDEMMMLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            AQT F  K      + L    VI KV++L  RLV+V G+D +S+EAQ NAT++  + +R
Sbjct: 895  AQTTF--KIQSGATSDLHPSYVIPKVKQLLGRLVIVRGNDKISLEAQDNATLLIKAQLR 951

[226][TOP]
>UniRef100_A5H297 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoria polycarpa
            RepID=A5H297_9LECA
          Length = 1020

 Score =  112 bits (281), Expect = 1e-23
 Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GDVVQFLYGEDG+DAV IE Q  + +K    + ++  R+D     P   +
Sbjct: 791  KYDGTVRNSLGDVVQFLYGEDGLDAVHIESQPVDIVKCSNGQFERKCRVDLMDPRPETSI 850

Query: 186  SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
             +E  E    +  D  V+  + +E  Q+++    LRE      D+   +PLN+ R++ NA
Sbjct: 851  PSELLECSKEIAGDLDVQGHLDEEYEQLQKAREFLRE---GKTDDSAYLPLNIIRILENA 907

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +  F  K      + L   EVI +V EL +RLV+V G D LS EAQ NAT++F + +R
Sbjct: 908  KAAF--KIRNNARSNLHPAEVIPQVNELLDRLVIVRGDDPLSQEAQHNATLLFKAQLR 963

[227][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GTVRNS G ++Q  YGEDG+    +E Q    +K      +K YR D T +     
Sbjct: 863  VNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERTLRR 922

Query: 183  LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            +  E+  + L    +V Q +  E  Q+  D   LR ++  NGD KV +P NL R+IWN Q
Sbjct: 923  IFNEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQ 981

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F+     P  T L   +VI  VR+L +R V+V G+D LS +A  NAT++F  LVR
Sbjct: 982  KIFHINKRSP--TDLSPLKVIQGVRDLLQRCVIVAGTDRLSKQANENATLLFQCLVR 1036

[228][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  112 bits (280), Expect = 2e-23
 Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V Y GTVRNS G +VQ  YGEDG+D + +E Q    +K   A  +K +++D + +     
Sbjct: 938  VNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEKSLRK 997

Query: 183  LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
            L  E     L+      + +  E  Q++ED R+LR ++   GD K+ +P NL R+IWNAQ
Sbjct: 998  LYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQ 1056

Query: 360  TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
              F  +  +P  T L    VI  V+EL ++LV+V G D +S +AQ NAT++ + L+R
Sbjct: 1057 KIFRVELRKP--TDLNPLRVIEGVKELSKKLVIVSGEDRISKQAQYNATLLMNILLR 1111

[229][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y GTVRNS GD+VQFLYGEDG+D   IE Q  + +K    +    +R+   D  R + 
Sbjct: 872  VKYDGTVRNSLGDIVQFLYGEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLS 931

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            PD L  E+   +  D  V++ + +E  Q+ +D   LR  V+   DE + +P+N+ R++ +
Sbjct: 932  PDIL--EQATEIAGDIEVQKHLDEEWEQLLKDRAFLR-TVVKEDDEMMQLPINIQRILES 988

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +      + L   EV+ +VR+L +RL+VV G D LS EAQ NAT++F + +R
Sbjct: 989  AKTTFRIRDGT--ISDLHPAEVVPQVRQLLDRLLVVRGDDPLSREAQENATLLFKAQLR 1045

[230][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score =  112 bits (280), Expect = 2e-23
 Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173
            V+Y GTVRNS GD++QF+YGEDG+D   IE Q  +++K   AKL + +R+D     R + 
Sbjct: 866  VKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVDHIKCSDAKLLERFRVDVMDPERTLG 925

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P+ L  E+   +  D  V++   +E   I +D   LR  V+   +E + +P+N+ R++  
Sbjct: 926  PEIL--EQANEIAGDIEVQRYFDEEWEAILKDREFLR-TVVKEDEEMMQLPINVQRILEM 982

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +      + L   EVI +V++L +RLV+V G+D +S EAQ NAT++F + +R
Sbjct: 983  ARTTFRIR--EGTISDLHPAEVIPQVQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLR 1039

[231][TOP]
>UniRef100_A9X969 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porpidia speirea
           RepID=A9X969_9LECA
          Length = 615

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6   RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
           +Y GTVRNS GD+VQF+YGEDG+D V IE Q  + +     + +K +R+D     P    
Sbjct: 392 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEKKFRVDLMDPRPEASI 451

Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
            PD+L  E+   +  +  V+  + +E  Q++     LR+    + +E++ +P+N+ R+I 
Sbjct: 452 SPDYL--EQANEIAGNLKVQTFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 508

Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L   EVI +VR+L ERLVVV G D LS EAQ NAT++F + +R
Sbjct: 509 TAKTTFKIK--NGARSNLHPAEVIPQVRDLLERLVVVRGDDELSKEAQHNATLLFKAQLR 566

[232][TOP]
>UniRef100_A9Q9P5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
            diffractella RepID=A9Q9P5_9EURO
          Length = 999

 Score =  112 bits (280), Expect = 2e-23
 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L  RLV+V G D +S+ AQ NAT++  +L+R
Sbjct: 895  ARTTFKIQSGAP--SDLHPTYVIPKVQQLLGRLVIVRGDDPISLGAQNNATLLIKALLR 951

[233][TOP]
>UniRef100_A9Q9N4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lacinulatum
            RepID=A9Q9N4_9EURO
          Length = 989

 Score =  112 bits (280), Expect = 2e-23
 Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 6/182 (3%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D    M P  
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDL---MEPKK 831

Query: 183  L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARL 344
            L      E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R+
Sbjct: 832  LVRHDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSADEMMPLPMNVVRI 891

Query: 345  IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524
            +  A+T F  +   P  + L    VI KV++L ERL +V G D +S+EAQ NAT++  + 
Sbjct: 892  LNQARTTFKIQSGGP--SDLHPSYVIPKVKQLLERLTIVRGDDSISLEAQENATLLIKAQ 949

Query: 525  VR 530
            +R
Sbjct: 950  LR 951

[234][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD---MP 173
            V Y GT+RNS   ++Q  YGEDGM   RIEGQ    +K   A  ++ +  D   +     
Sbjct: 871  VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNAFLRL 930

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
             + L+ +    + +D     A+ +E  Q+K+D  +LR  +  NG++KVN+P+ L+RLIWN
Sbjct: 931  KNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIWN 989

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +Q  F  K +    T L   +VI  +++L +RL+VV G D LS EAQ NAT++F   +R
Sbjct: 990  SQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1046

[235][TOP]
>UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii
           RepID=C3U0B8_9EURO
          Length = 618

 Score =  112 bits (279), Expect = 2e-23
 Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
           V+Y GTVRNS GD+VQFLYGEDG+D   IE Q  + ++    +  K YRI   D    + 
Sbjct: 397 VKYDGTVRNSLGDIVQFLYGEDGLDGQHIENQRVDVIRCSDEQFRKRYRIDLMDPESTLS 456

Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
           PD L  E+   +  D  V++ + +E  Q+  D + LR  V    +EK+ +P+N+ R++ +
Sbjct: 457 PDIL--EQAGEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLPINVQRILES 513

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           A+T F  +      + L   EVI +V+ L +RL+VV G D +S EAQ NAT++F + +R
Sbjct: 514 AKTAFRIRDGT--ISDLHPAEVIPQVQALLDRLLVVRGDDPISKEAQDNATLLFKAQLR 570

[236][TOP]
>UniRef100_C3U0B7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eremascus albus
            RepID=C3U0B7_9EURO
          Length = 994

 Score =  112 bits (279), Expect = 2e-23
 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y GTVRNS GDVVQFLYGEDG+D   IE Q  + +K   AK    YR+   D  R + 
Sbjct: 773  VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDVIKCSDAKFRDRYRVDLMDPERTIS 832

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            PD L  E+   +  D  V++ + +E  Q+++D   LR       +E + +P+N+ R++ +
Sbjct: 833  PDLL--EQANEITGDIEVQRYLDEEWEQLQKDRAFLR-SATKEDEEMMQLPINIQRILES 889

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A  K   +      + L   EVI + R+L +RLVVV G D +S EAQ +AT++F + +R
Sbjct: 890  A--KSTVRIREGAISDLHPAEVIPQTRDLLDRLVVVRGDDTISREAQESATMLFKAQLR 946

[237][TOP]
>UniRef100_C3U0B4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ascosphaera colubrina
            RepID=C3U0B4_9EURO
          Length = 963

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y GTVRNS GDVVQF+YGEDG+D   IE Q  + +     K  + +R+   D    +P
Sbjct: 768  VKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDVITCSDEKFRQRFRVDFMDPDYTIP 827

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            PD L  E  + +  D   ++ + +E  Q+++D   LR  V    +E + +P+N+ R++  
Sbjct: 828  PDLL--EHGKEIADDIEAQKYLDEEWEQLQKDRNFLR-TVCKEDEEMMQLPINVQRILET 884

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +      + L   EVI +VREL +RLV+V G D +S EAQ +AT++F   +R
Sbjct: 885  AKTTFRIREGTV--SDLHPSEVIPQVRELLDRLVIVRGDDSISREAQESATLLFMCQLR 941

[238][TOP]
>UniRef100_A9Q9Q1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens
            RepID=A9Q9Q1_9EURO
          Length = 999

 Score =  112 bits (279), Expect = 2e-23
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR  ++  T+GDE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI K+++L ERL++V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 951

[239][TOP]
>UniRef100_A9Q9Q0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens
            RepID=A9Q9Q0_9EURO
          Length = 977

 Score =  112 bits (279), Expect = 2e-23
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 764  VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 823

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR  ++  T+GDE + +P+N+ R++  
Sbjct: 824  QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 883

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI K+++L ERL++V G D +S+EAQ NAT++  + +R
Sbjct: 884  ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 940

[240][TOP]
>UniRef100_A9Q9M9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis
            cartilaginea RepID=A9Q9M9_9EURO
          Length = 989

 Score =  112 bits (279), Expect = 2e-23
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y GTVR+S+G++VQF+YGEDG+D   IE Q  + +       ++ +R+D        W
Sbjct: 775  VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDIAFEQQFRVDLMEPTKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR  ++  T  DE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRGFLRYIKQAATTSDEMMPLPMNILRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  +   P  + L    VI KV++L +RL+VV G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 951

[241][TOP]
>UniRef100_A5H276 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cetraria islandica
            RepID=A5H276_9LECA
          Length = 1003

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+D V IE Q  + +     + ++ +R+D     P   +
Sbjct: 786  KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDIIACSTKQFERKFRVDLMDSKPETSI 845

Query: 186  SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            S E  E       D   ++ + DE  Q+++D   LR+    +  E + +PLN+ R++  A
Sbjct: 846  SPEFLEQANEMIGDVETQKHLDDEYRQLEKDRAELRKN-RQDDTENLQLPLNVIRILDTA 904

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K      + L   EVI +V++L +RLVVV G+D LS EAQ NAT++F   +R
Sbjct: 905  KTTFKIK--NGARSNLHPAEVIPQVQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 960

[242][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  112 bits (279), Expect = 2e-23
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173
            V+Y GTVRNS GDV+QF+YGEDG+D   IE Q  + +K    KL + +R+   D  R + 
Sbjct: 872  VKYDGTVRNSLGDVIQFIYGEDGLDGGHIENQRVDIIKCSDEKLRERFRVDLMDPERSLG 931

Query: 174  PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353
            P+ L  E+   +  D  V++ + +E  Q+ +D   LR  V+   DE + +P+N+ R++  
Sbjct: 932  PEVL--EQANEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLPINVQRILET 988

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A++ F  +      + L   EV+ +V+ L +RL+VV G D +S EAQ NAT++F + +R
Sbjct: 989  ARSTFRIR--EGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEAQENATLLFKAQLR 1045

[243][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score =  111 bits (278), Expect = 3e-23
 Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179
           V Y GTVRNS   ++Q  YGEDG+D + +E Q    +K   A  +K +++D + +     
Sbjct: 82  VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 141

Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359
           + + +    L+      + +  E  Q++ED R+LR ++  NG+ K+ +P NL RL+WNAQ
Sbjct: 142 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 200

Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+ +  +P  T L    VI  VREL ++L++V G + +S +AQ NAT++ + LVR
Sbjct: 201 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGENRISKQAQYNATLLMNILVR 255

[244][TOP]
>UniRef100_Q0PQ05 DNA-directed RNA polymerase (Fragment) n=1 Tax=Peltigera degenii
            RepID=Q0PQ05_9LECA
          Length = 1011

 Score =  111 bits (278), Expect = 3e-23
 Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173
            +Y GTVRNS GD+VQF+YGEDG+D V IEGQ+ + +    A+ ++ +R+D     P    
Sbjct: 780  KYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQLVDIITCSDARFERKFRVDLMDPRPETSI 839

Query: 174  -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350
             PD+L  E+   +  D  ++  + +E   ++     LR++   +  E+V +P N+ R++ 
Sbjct: 840  SPDFL--EQANEMAGDLEIQGYLDEEYDHLQAARDFLRKD-KRDDLEQVYLPTNIIRILD 896

Query: 351  NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             A+T F  K      + L   EVI +V++L +RLV+V G D LS EAQ+NATI+F + +R
Sbjct: 897  TAKTTFKIKD--GARSNLHPAEVIPQVQDLLDRLVIVRGDDSLSREAQQNATILFKAQLR 954

[245][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  111 bits (278), Expect = 3e-23
 Identities = 63/176 (35%), Positives = 99/176 (56%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            VRY GTVRN+ GD+VQF YGEDG+DA  +E Q+F+ L+      +K YRID   D     
Sbjct: 856  VRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNVDFEKKYRIDLVEDKK--- 912

Query: 183  LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362
            +      ++  D A+++ + +E +Q+  D  + R  +  NG+ +   P+N+ R+I N+  
Sbjct: 913  ICLHMENSIEGDVAMQELLDEEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQ 972

Query: 363  KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
             F+    +P  T L   ++I  VR L  +L V  G D ++ E Q NAT++F  L+R
Sbjct: 973  IFHLDSKKP--TDLLPSDIIYGVRNLISKLSVFRGDDRITKEIQENATLLFQILLR 1026

[246][TOP]
>UniRef100_A9Q9T2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria tristis
            RepID=A9Q9T2_9EURO
          Length = 988

 Score =  111 bits (278), Expect = 3e-23
 Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 764  VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 823

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED R LR  ++  T  DE + +P+N+ R++  
Sbjct: 824  QDRLEQASEIHGDVDVQKMFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 883

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K H    + L    VI KV+ L +RL++V G D +S+EAQ NAT++  + +R
Sbjct: 884  ARTTF--KIHSGSPSDLHPSYVIPKVKLLLDRLIIVRGDDRISLEAQENATLLIKAQLR 940

[247][TOP]
>UniRef100_A9Q9R6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
            hochstetteri RepID=A9Q9R6_9EURO
          Length = 999

 Score =  111 bits (278), Expect = 3e-23
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR  ++  T+GDE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI K+++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[248][TOP]
>UniRef100_A9Q9R5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria
            hochstetteri RepID=A9Q9R5_9EURO
          Length = 999

 Score =  111 bits (278), Expect = 3e-23
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3    VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
            V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 775  VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834

Query: 183  LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
                E+   +  D  V++   +E  Q+ ED   LR  ++  T+GDE + +P+N+ R++  
Sbjct: 835  QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894

Query: 354  AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            A+T F  K      + L    VI K+++L +RLV+V G D +S+EAQ NAT++  + +R
Sbjct: 895  ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951

[249][TOP]
>UniRef100_A9Q9N7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium
           squamulosum RepID=A9Q9N7_9EURO
          Length = 612

 Score =  111 bits (278), Expect = 3e-23
 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +3

Query: 3   VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182
           V+Y  TVR+S+G++VQF+YGEDG+D   IE Q  + +       +K +R+D        W
Sbjct: 398 VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 457

Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353
               E+   +  D  V++   +E  Q+ ED + LR  ++  T+ DE + +P+N+ R++  
Sbjct: 458 HDRLEQASEIHGDIDVQKLFDEEYEQLVEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 517

Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
           AQT F  K      + L    VI KV++L ERLV+V G+D +S+EAQ NAT++  + +R
Sbjct: 518 AQTTF--KIQTGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 574

[250][TOP]
>UniRef100_A7J590 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coccocarpia
            erythroxyli RepID=A7J590_9LECA
          Length = 997

 Score =  111 bits (278), Expect = 3e-23
 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
 Frame = +3

Query: 6    RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185
            +Y GTVRNS GD+VQF+YGEDG+DAV +E Q  + +     + ++ +R+D     P   +
Sbjct: 766  KYDGTVRNSLGDIVQFVYGEDGIDAVHVEEQRVDIILSSDEQFERKFRVDLMDPRPEISI 825

Query: 186  SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356
            S+E  E       D  V+  + +E  Q++    +LR +V  +G + + +P+N+ R++  A
Sbjct: 826  SSEYLEQANEIVGDLEVQAYLDEEYEQLQAARDMLR-KVKQDGTDLLQLPINIVRILDTA 884

Query: 357  QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530
            +T F  K      + L   EVI +VREL +RL+VV G D LS E+Q NAT++F + +R
Sbjct: 885  KTTFKIK--NGTRSNLHPAEVIPQVRELLDRLIVVRGDDDLSKESQHNATLLFKAQLR 940