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[1][TOP] >UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8IRZ2_CHLRE Length = 1789 Score = 363 bits (932), Expect = 4e-99 Identities = 178/178 (100%), Positives = 178/178 (100%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW Sbjct: 864 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 923 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT Sbjct: 924 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 983 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 536 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH Sbjct: 984 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMH 1041 [2][TOP] >UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC 50319 RepID=Q8MX26_9EUKA Length = 1014 Score = 149 bits (377), Expect = 9e-35 Identities = 75/176 (42%), Positives = 116/176 (65%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 ++Y TVRNS GD++QF YGEDGMD V IE Q + LK D A+ K Y++D +R D+ Sbjct: 784 IKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLKTYQLDVSRPEQLDF 843 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 + AE E L P A+ E+ Q+++D ++LR+++ G++ V++P+NL RLIWNAQ Sbjct: 844 MDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQK 903 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +F+ R + ++ ++VI V+ L ERL+VV G+D LS++AQ NAT +F ++R Sbjct: 904 RFHV--DRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTNATTLFKIMLR 957 [3][TOP] >UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium aggregatum RepID=Q2PYS6_9FUNG Length = 1016 Score = 141 bits (355), Expect = 3e-32 Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173 VRY GT+R+S G V+QF YGEDGMD ++E Q E L AK +KAYR+D T + Sbjct: 791 VRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMSDAKFEKAYRVDLTGGQYGLK 850 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P L E L +D + + E Q+++D LR + +G +P+NL RLIWN Sbjct: 851 PGVLDFRTQENLLSDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWN 910 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ +F P +P T L + V +L ++LVVV G+D LSVEAQ+NAT++F LVR Sbjct: 911 AQNQFEVGPRKP--TDLHPLHITESVEQLLDKLVVVRGNDPLSVEAQKNATLLFQILVR 967 [4][TOP] >UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum RepID=Q1ACV3_ACEPM Length = 240 Score = 140 bits (352), Expect = 8e-32 Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q+ + LK + +K +R + +D P+ Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQILDSLKIKKSDFNKTFRFEMDQDNWNPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T + E+ +++ D L E+ T+GD +P+NL RLIWNAQ Sbjct: 80 YMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P RP + + EV+ + +L ERL VV G D LSVEAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDPRRP--SDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILLR 194 [5][TOP] >UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata RepID=Q71ET5_NYMOD Length = 1013 Score = 139 bits (351), Expect = 1e-31 Identities = 76/177 (42%), Positives = 108/177 (61%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK ++ + + P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFKFEFDDENWDPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +L + E L+T ++ E+ +++ D R L E+ T GD +P+NL RLIWNAQ Sbjct: 850 YLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDAMSMEAQKNATLFFNILLR 964 [6][TOP] >UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale RepID=B7SNX2_PAPOR Length = 1010 Score = 139 bits (350), Expect = 1e-31 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + DK YR + D P+ Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPN 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ ++ E L+ E+ ++ +D L E+ T GD +P+NL RLIWNAQ Sbjct: 847 YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 907 KTFKVDPRRP--SDMHPMEIVEAIDKLQERLKVVPGDDSMSMEAQKNATLFFNILLR 961 [7][TOP] >UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351 Length = 2085 Score = 138 bits (348), Expect = 2e-31 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+ Sbjct: 869 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 989 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043 [8][TOP] >UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q5WMZ9_ORYSJ Length = 1741 Score = 138 bits (348), Expect = 2e-31 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+ Sbjct: 816 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 875 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 936 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 990 [9][TOP] >UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ Length = 1834 Score = 138 bits (348), Expect = 2e-31 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R + + P+ Sbjct: 869 VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPN 928 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +LS + E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 989 KTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLR 1043 [10][TOP] >UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U396_PHYPA Length = 1742 Score = 138 bits (348), Expect = 2e-31 Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ ++ YR + R D PD Sbjct: 871 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYRFEIDRDDWAPD 930 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++SAE E ++T + E+++++ D R + E+ G+ +P+NL RLIWNAQ Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + + E++ V L ERL VV G+D +S+EAQRNAT+ F L+R Sbjct: 991 KIFKVDLRKS--SDMHPMEIVEAVENLQERLRVVPGNDQISMEAQRNATLFFGCLLR 1045 [11][TOP] >UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri RepID=B7SNW8_DRIWI Length = 1010 Score = 137 bits (345), Expect = 5e-31 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ D +R + D P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDNDNWNPS 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 847 YMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP +G+ E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 907 KTFKVDLRRP--SGMHPMEIVEAVDKLQERLKVVPGDDPISMEAQKNATLFFNILLR 961 [12][TOP] >UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito RepID=Q1ACS7_9MAGN Length = 240 Score = 136 bits (343), Expect = 8e-31 Identities = 75/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + +K ++ + + P+ Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFKYEIDDPNWNPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ +E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ Sbjct: 80 YMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G+D LS+EAQ+NAT++F+ L+R Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGADSLSIEAQKNATLLFNILLR 194 [13][TOP] >UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe tomentosa RepID=Q1ACT8_9MAGN Length = 240 Score = 136 bits (342), Expect = 1e-30 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + +K +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFNKVFRYEIDDPNWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D LS+EAQ+NAT++F+ L+R Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEAQKNATLLFNILLR 194 [14][TOP] >UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis RepID=B7SNW5_ASPOF Length = 1009 Score = 136 bits (342), Expect = 1e-30 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + P Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFNNVYRYEIDDNQWDPS 845 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T P E+ +++ D L ++ T GD +P+NL RLIWNAQ Sbjct: 846 YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P RP + + E++ V +L E+L VV G D LS+EAQ+NAT++F+ L+R Sbjct: 906 KTFKVDPRRP--SDMHPMEIVEAVDKLQEKLRVVPGDDFLSMEAQKNATLLFNILLR 960 [15][TOP] >UniRef100_A1YIB8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gigaspora gigantea RepID=A1YIB8_9GLOM Length = 1039 Score = 135 bits (341), Expect = 1e-30 Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 14/190 (7%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRNS GD+VQF YGEDGMDA +E Q F+ L + A+ D Y I+ D Sbjct: 801 VKYDGTVRNSLGDIVQFCYGEDGMDACFVEPQTFDTLPMNNAEFDNKYLIELKDDE---- 856 Query: 183 LSAEEYEALRTDPA--------------VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVN 320 +E EA + D + + + +E Q+K D +L+ ++ TNGD K Sbjct: 857 -KNKEKEAGQQDDTDLVQPKKPKTQQEIIREKIVEEYVQLKRDREMLQRDIFTNGDNKWP 915 Query: 321 IPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRN 500 +P+N+ RLI NAQ KFN +P R T LQ +VI V E+ RLVVV G+D +S EAQ N Sbjct: 916 LPVNIKRLIKNAQQKFNIRPSRWTTTDLQYIDVINSVEEVMSRLVVVKGNDQISHEAQTN 975 Query: 501 ATIMFHSLVR 530 AT +F L+R Sbjct: 976 ATTLFKILLR 985 [16][TOP] >UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7R1R2_VITVI Length = 429 Score = 135 bits (340), Expect = 2e-30 Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + D+A+R + + P+ Sbjct: 125 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 184 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ + GD ++P+NL RLIWNAQ Sbjct: 185 YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 244 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + + E++ V +L ERL VV G D +S+EAQ+NAT++F+ L+R Sbjct: 245 KTFKIDLRRP--SDMHLMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 299 [17][TOP] >UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN Length = 977 Score = 135 bits (339), Expect = 2e-30 Identities = 73/177 (41%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 ++Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK + D+ +R + + P+ Sbjct: 60 LKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPN 119 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ +NGD + +P+NL RLIWNAQ Sbjct: 120 YMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQ 179 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D LS EAQ+NAT++F+ L+R Sbjct: 180 KTFKVDFRRP--SDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLR 234 [18][TOP] >UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda RepID=Q71ET4_AMBTC Length = 1013 Score = 134 bits (338), Expect = 3e-30 Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ + Y+ + ++ P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KMFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [19][TOP] >UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus macrophyllus RepID=Q2TUN7_9CONI Length = 1013 Score = 134 bits (338), Expect = 3e-30 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + ++ P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEVDQENWNPI 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P +P + + E++ + L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDPRKP--SDMHPMEIVEAIDRLQERLKVVPGDDLISIEAQKNATLFFNILLR 964 [20][TOP] >UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis RepID=Q2TUN8_TAXCA Length = 1013 Score = 134 bits (337), Expect = 4e-30 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + ++ P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYRYEIDQENWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T + E+ +++ D R L E+ T GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P + + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [21][TOP] >UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus sempervirens RepID=Q1ACU8_BUXSE Length = 240 Score = 134 bits (337), Expect = 4e-30 Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A DK +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEDQKLDSLKMKKADFDKVFRYEIDDENWSPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194 [22][TOP] >UniRef100_B7SNX5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Saruma henryi RepID=B7SNX5_SARHE Length = 1009 Score = 134 bits (337), Expect = 4e-30 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ DK +R + + P Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFRYEFDDANWNPS 845 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 846 YMLPEHVEDLKTIREFRSVFDAEVQKLEADRYQLGTEITTTGDNSWPMPVNLKRLIWNAQ 905 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 906 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGEDLMSMEAQKNATLFFNILLR 960 [23][TOP] >UniRef100_A1YIC1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Blastocladiella emersonii RepID=A1YIC1_BLAEM Length = 1005 Score = 134 bits (337), Expect = 4e-30 Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRN+QG+++QF YGEDGMD R+E Q+ E L+ AK D+ YRID T Sbjct: 775 VKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFDRRYRIDVTDVGGSSG 834 Query: 183 L--SAEEYEALR--TDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 L E+ R V++ + E Q+ D R L +++ GD + +P NL R+IW Sbjct: 835 LRPGTVEFGIQREMQSAEVQELLNAEYEQLLRDRRDL-QQIFPRGDARWPLPCNLNRIIW 893 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F +P + L V+ KVR LC+ LVV+ G+D +SVEAQRNAT++ +LVR Sbjct: 894 NAQNLFKIDKSKP--SNLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATLLMQALVR 951 [24][TOP] >UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis RepID=Q71ET8_WELMI Length = 1013 Score = 133 bits (335), Expect = 7e-30 Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV QFLYGEDGMDAV IE Q + LK + D Y+ + ++ P Sbjct: 790 VKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFDDVYKYELDQENWNPG 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ ++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P + + + E+I + +L ERL VV G+D LS+EAQ+NAT+ F+ L+R Sbjct: 910 KLFKIDPRKA--SDMHPMEIIDAIDKLQERLKVVPGNDPLSIEAQKNATLFFNILLR 964 [25][TOP] >UniRef100_Q1L5Z5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhododendron macrophyllum RepID=Q1L5Z5_RHOMC Length = 589 Score = 133 bits (335), Expect = 7e-30 Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P Sbjct: 377 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEFDKKFRYEIDDGNWNPS 436 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ AE E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 437 YMLAEHVEDLKTIREFRNVFDAEVQKLEADRLQLGTEIATTGDNNWPMPVNLGRLIWNAQ 496 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT F+ L+R Sbjct: 497 KTFKIDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSMEAQKNATTFFNILLR 551 [26][TOP] >UniRef100_Q1ACV0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis beckleri RepID=Q1ACV0_9MAGN Length = 240 Score = 133 bits (335), Expect = 7e-30 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIEFQKLDSLKMKKSDFBRVFRYEIGDENWNPT 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T P E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 FMLPEHVEGLKTIPEFGNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194 [27][TOP] >UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus tuberosa RepID=Q1ACU7_9MAGN Length = 240 Score = 133 bits (335), Expect = 7e-30 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +SVEAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISVEAQKNATLFFNILLR 194 [28][TOP] >UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo nucifera RepID=Q1ACT3_NELNU Length = 240 Score = 133 bits (335), Expect = 7e-30 Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [29][TOP] >UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito RepID=Q1ACS8_9MAGN Length = 240 Score = 133 bits (334), Expect = 9e-30 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + K ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLESLKMKKKEFKKVFKYEIDDPNWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD + +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L E+L VV G D LS+EAQ+NAT++F+ L+R Sbjct: 140 KTFKVDSRRP--SDMHPMEIVEAIDKLQEKLKVVPGEDSLSIEAQKNATLLFNILLR 194 [30][TOP] >UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays RepID=Q71ET7_MAIZE Length = 1009 Score = 132 bits (333), Expect = 1e-29 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+ Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPN 845 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 846 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 906 KTFKIDFRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 960 [31][TOP] >UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera chilensis RepID=Q1ACU4_GUNCH Length = 240 Score = 132 bits (333), Expect = 1e-29 Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK A+ DK ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194 [32][TOP] >UniRef100_Q1ACT5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus orientalis RepID=Q1ACT5_PLAOI Length = 240 Score = 132 bits (333), Expect = 1e-29 Identities = 77/177 (43%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V L ERL VV G D LS+EAQ+NAT+ F+ L R Sbjct: 140 KTFXVDLRRP--SDMHPMEIVEAVDXLQERLXVVPGDDFLSMEAQKNATLFFNILXR 194 [33][TOP] >UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp. RepID=O04144_9VIRI Length = 613 Score = 132 bits (333), Expect = 1e-29 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q +K + + D YR + + D PD Sbjct: 378 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKSTFDATYRYEIDQEDWSPD 437 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ + + + Q M E+ Q+++D R L E+ GD +P+N+ RLIWNAQ Sbjct: 438 YMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQ 497 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + +V+ + +L ERL VV+G D +S EAQ+NAT+ F+ L+R Sbjct: 498 KIFKIDLRKP--SDMNPMDVVDGMDKLQERLKVVVGDDHISREAQKNATLFFNCLLR 552 [34][TOP] >UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FZ51_ORYSJ Length = 1526 Score = 132 bits (333), Expect = 1e-29 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+ Sbjct: 539 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 598 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 599 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 658 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 659 KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 713 [35][TOP] >UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group RepID=B8BAW1_ORYSI Length = 1449 Score = 132 bits (333), Expect = 1e-29 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+ Sbjct: 838 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPN 897 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 898 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQ 957 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 958 KTFKIDLRRP--SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 1012 [36][TOP] >UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum RepID=B7SNX4_PEA Length = 1010 Score = 132 bits (333), Expect = 1e-29 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK D+A+R + + P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPT 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ ++ D L E+ T GD + +P+NL RLIWNAQ Sbjct: 847 YMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + +L ERL VV G D LS EAQ+NAT++F+ L+R Sbjct: 907 KTFKVDFRRP--SDMHPMEIVEAIDKLQERLRVVPGDDLLSQEAQKNATLLFNILLR 961 [37][TOP] >UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum RepID=Q71ET3_PSINU Length = 1013 Score = 132 bits (332), Expect = 2e-29 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV++FLYGEDGMDAV IE Q + +K + D+ Y + + + PD Sbjct: 790 VKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFEIDSENWNPD 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ AE E L+T E+ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + E++ V +L ERL VV G D +S EAQ+NAT+ F+ L+R Sbjct: 910 KIFKVDFRKP--SDMHPMEIVEAVDKLQERLKVVPGEDEISKEAQKNATLFFNILLR 964 [38][TOP] >UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia scandens RepID=Q1ACU1_9MAGN Length = 240 Score = 132 bits (332), Expect = 2e-29 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ +E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [39][TOP] >UniRef100_Q1ACT4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Platanus orientalis RepID=Q1ACT4_PLAOI Length = 240 Score = 132 bits (332), Expect = 2e-29 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GT RNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P Sbjct: 20 VKYDGTFRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ +++ D L E+ T GD ++P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFQNVFDAEVRKLEADRYQLGTEITTMGDNSWSMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V L ERL VV G D LS+EAQ+NAT+ F+ L R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDNLQERLRVVPGDDFLSMEAQKNATLFFNILPR 194 [40][TOP] >UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata RepID=Q71EU1_9SPER Length = 1013 Score = 132 bits (331), Expect = 2e-29 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + + P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYEIDNENWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [41][TOP] >UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q71ET9_9CONI Length = 1013 Score = 132 bits (331), Expect = 2e-29 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + ++ P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYELDQENWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + E+ +++ D R L E+ +GD +P+NL RLIWN+Q Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLKRLIWNSQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ + L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDARRP--SDMHPMEIVEAIDRLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [42][TOP] >UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana RepID=Q71ET6_MAGSO Length = 1010 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961 [43][TOP] >UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis RepID=Q2TUN9_THUOC Length = 1013 Score = 132 bits (331), Expect = 2e-29 Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + YR + ++ P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYEIDQENWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T + E+ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P + + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDPRKR--SDMHPMEIVEAIDKLQERLKVVPGDDLISIEAQKNATLFFNILLR 964 [44][TOP] >UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis corallina RepID=Q1ACU9_9MAGN Length = 240 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVGIEFQKLDSLKMKKSDFDRVFRYEIGDENWNPT 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 140 KTFEVDLRRP--SDMHPTEIVEAVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLR 194 [45][TOP] >UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei RepID=Q1ACS9_9CARY Length = 240 Score = 132 bits (331), Expect = 2e-29 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + PD Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFRYEFDAENWEPD 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RL+WNAQ Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKRLLWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194 [46][TOP] >UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron sinense RepID=Q1ACS5_9MAGN Length = 240 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ DK +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ ++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLR 194 [47][TOP] >UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron tulipifera RepID=B7SNX0_LIRTU Length = 1010 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961 [48][TOP] >UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum RepID=B7SNW7_CERDE Length = 1010 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 847 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 906 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 907 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 961 [49][TOP] >UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris RepID=B7SNW6_BETVU Length = 1012 Score = 132 bits (331), Expect = 2e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P Sbjct: 789 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 848 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 849 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 908 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 909 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 963 [50][TOP] >UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces stegomyiae RepID=A1YIC2_9FUNG Length = 1014 Score = 132 bits (331), Expect = 2e-29 Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 5/181 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-----TRD 167 V+Y GTVRN+QG+++QF+YGEDGMDA+++E Q + L+ + ++ + YRID Sbjct: 784 VKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRFESKYRIDVMDIEGKAG 843 Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347 +PP + + +++ V++ + +E +Q+K+D LR+ LT GD +P+NL R+I Sbjct: 844 LPPGCVEFGIQQEMQSID-VQKLLDEEFSQLKDDRACLRKIFLT-GDANWPLPMNLKRII 901 Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 WNAQ F RP + L V+ +VR LC++L V+ G D +S+EAQ+NAT++ L+ Sbjct: 902 WNAQNLFKIDKQRP--SNLHPDYVVNQVRGLCDKLTVIRGDDKISLEAQKNATLLTQILI 959 Query: 528 R 530 R Sbjct: 960 R 960 [51][TOP] >UniRef100_A1YIC0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catenaria anguillulae RepID=A1YIC0_9FUNG Length = 1020 Score = 132 bits (331), Expect = 2e-29 Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRN+QG+++QFLYGEDGMD R+E Q+ E L+ +K + +R+D T P Sbjct: 790 VKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSKFETRFRVDVTEPDTPRG 849 Query: 183 LSAEEYE-----ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347 L + E ++T V+ + DE Q++ D R ++V GD + +P NL R+I Sbjct: 850 LRSASVEFGIMKEIQT-AEVQDLLDDEFRQLQVD-RAQLQQVFKRGDARWPLPGNLNRII 907 Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 WNAQ F +P + L + ++ V+ LC +LVVV G+D LS EAQ+NAT++ LV Sbjct: 908 WNAQNMFKLDKSKP--SNLHPEHIVASVKSLCTQLVVVPGTDKLSREAQKNATVLMQILV 965 Query: 528 R 530 R Sbjct: 966 R 966 [52][TOP] >UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta RepID=Q71EU0_CYCRE Length = 1013 Score = 131 bits (330), Expect = 3e-29 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ + YR + + P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYEIDNENWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T + ++ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [53][TOP] >UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5YGY9_SORBI Length = 1857 Score = 131 bits (330), Expect = 3e-29 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D +R + + P+ Sbjct: 867 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPN 926 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 927 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 986 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 987 KTFRIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLR 1041 [54][TOP] >UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia aspera RepID=Q1ACU2_9MAGN Length = 240 Score = 131 bits (329), Expect = 3e-29 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [55][TOP] >UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus coccinea RepID=Q1ACT1_9ROSI Length = 240 Score = 131 bits (329), Expect = 3e-29 Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q E LK ++ +K +R + PD Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLESLKMKKSEFNKTFRYEFDDEHWNPD 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F R + + E++ V +L ERL VV G D LSVEAQ+NAT+ F+ L+R Sbjct: 140 KIFKIDNRR--HSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEAQKNATLFFNILLR 194 [56][TOP] >UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis piasezkii RepID=Q1ACS3_9MAGN Length = 240 Score = 131 bits (329), Expect = 3e-29 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + D+A+R + + P+ Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLESLKMKGMEFDRAFRYEIDDENWNPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ + GD ++P+NL RLIWNAQ Sbjct: 80 YMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F R + + E++ V +L ERL VV G D +S+EAQ+NAT++F+ L+R Sbjct: 140 KTFKIDLRRS--SDMHPMEIVETVDKLQERLKVVPGDDLISMEAQKNATLLFNILLR 194 [57][TOP] >UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia suffruticosa RepID=Q1ACU6_9MAGN Length = 240 Score = 130 bits (328), Expect = 5e-29 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLR 194 [58][TOP] >UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia cuneiformis RepID=Q1ACU3_9MAGN Length = 240 Score = 130 bits (328), Expect = 5e-29 Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK ++ D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ +E + L+T E+ +++ D L E+ T GD +P+NL RL+WNAQ Sbjct: 80 YMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKRLVWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [59][TOP] >UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri RepID=Q010D7_OSTTA Length = 1673 Score = 130 bits (328), Expect = 5e-29 Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA IE Q+ + L+ + ++ID Sbjct: 864 VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQVLDTLRLGAKEFAAVFQIDPDVSGFNKG 923 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 WLS E+ L V + + E ++++D RV +V GD V++P+N+ R+IWNAQ Sbjct: 924 WLSNEQASDLAHSTKVREIIDAEWERLQKD-RVELRKVFPTGDPHVHLPVNMKRIIWNAQ 982 Query: 360 TKFNCKPHRPGWT--GLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 ++ +RPG + L V VI V EL +L+VV G+D LS+EAQRN T++F + VR Sbjct: 983 KQYGM--YRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVR 1039 [60][TOP] >UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q2TUN6_GINBI Length = 1013 Score = 130 bits (327), Expect = 6e-29 Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + Y+ + + P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEIDNENWNPG 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ A+ E L+T E+ +++ D R L E+ +GD +P+NL RLIWNAQ Sbjct: 850 YMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKIDLRKP--SDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLR 964 [61][TOP] >UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis beckleri RepID=Q1ACV1_9MAGN Length = 240 Score = 130 bits (327), Expect = 6e-29 Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRYFRYEIDDESWNPG 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [62][TOP] >UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine herbstii RepID=Q1ACT9_IREHE Length = 240 Score = 130 bits (327), Expect = 6e-29 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + DK YR + D PD Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKLEFDKTYRYEFDADNWEPD 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L ++ T GD +P+NL RL+WNAQ Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + E++ V +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDMREK--SDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLR 194 [63][TOP] >UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum RepID=B7SNW9_ILLPA Length = 1013 Score = 130 bits (327), Expect = 6e-29 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + + +R + D P Sbjct: 790 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVFRYEIDNDNWNPS 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 850 YMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 910 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 964 [64][TOP] >UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=UPI0001985649 Length = 1848 Score = 129 bits (325), Expect = 1e-28 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P Sbjct: 868 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 927 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 928 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 987 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 988 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 1042 [65][TOP] >UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon punctatum RepID=Q1ACV2_9MAGN Length = 240 Score = 129 bits (325), Expect = 1e-28 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ +R + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSDFDRVFRYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRXP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 194 [66][TOP] >UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia integrifolia RepID=Q1ACT6_MACIN Length = 240 Score = 129 bits (325), Expect = 1e-28 Identities = 74/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ + +R + + P+ Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFNTVFRYEIDDENWNPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T G+ +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS EAQ+NAT++F+ L+R Sbjct: 140 KTFKLDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLR 194 [67][TOP] >UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis piasezkii RepID=Q1ACS4_9MAGN Length = 240 Score = 129 bits (325), Expect = 1e-28 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 194 [68][TOP] >UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI Length = 1010 Score = 129 bits (325), Expect = 1e-28 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D+ ++ + + P Sbjct: 105 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPS 164 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 165 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQ 224 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D +S+EAQ+NAT+ F+ L+R Sbjct: 225 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 279 [69][TOP] >UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes ampullaria RepID=Q1ACT2_9CARY Length = 240 Score = 129 bits (324), Expect = 1e-28 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS G V+QFLYGEDGMD+V IE Q E LK ++ D YR + D P+ Sbjct: 20 VKYDGTVRNSLGCVIQFLYGEDGMDSVWIESQKLESLKIKKSEFDMVYRYELNDEDWNPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ + E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F R + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKIDLRRR--SDMHPMEIVEAVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLR 194 [70][TOP] >UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella verticillata RepID=Q2PYR5_9FUNG Length = 1016 Score = 129 bits (324), Expect = 1e-28 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 12/188 (6%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------R 164 V+Y GTVRNS G V+QF YGEDGMDA +E Q + +K A +K YRID T + Sbjct: 782 VKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFEKKYRIDLTDKSKSFK 841 Query: 165 DMPPDW------LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIP 326 + D+ A+E A R +P ++ + E Q+ ED +LR + T GD +P Sbjct: 842 NGTLDYNVFKQIAEADEEAAKRGEPDMQTLLEQEFKQLDEDRHLLRNYIFTEGDNSWPMP 901 Query: 327 LNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNAT 506 N+ R IWN++ F+ RP + L + ++ ++ L ++LVVV G+D +SVEAQ NAT Sbjct: 902 TNIRRYIWNSKQMFHVDHKRP--SDLDPRHILESIKNLEKQLVVVRGTDRISVEAQDNAT 959 Query: 507 IMFHSLVR 530 ++F L+R Sbjct: 960 LLFRMLIR 967 [71][TOP] >UniRef100_Q2PYQ8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Paraglomus occultum RepID=Q2PYQ8_9GLOM Length = 847 Score = 129 bits (324), Expect = 1e-28 Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR--DMPP 176 V+Y GTVRNS GDV++F YGEDG D +E Q + L+ A +K Y ID + D+ P Sbjct: 621 VKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFEKKYYIDLRKDPDLNP 680 Query: 177 DWLSAEEYEALRTDPA--VEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 + ++ + D + +Q + E +++ ED ++LRE + NGD K +P+N+ RLI Sbjct: 681 SLVDPRVWDRISDDGSDKYQQHLDQEYSKLLEDRKILREFIFPNGDNKWPLPVNIKRLIK 740 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 N+Q F K H G + + E IT + +L ERL VV G D +S+EAQRN+T++F L+R Sbjct: 741 NSQQTF--KSHLRGGSDIDPIEAITDLNKLSERLKVVNGEDKISIEAQRNSTLLFQILLR 798 [72][TOP] >UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis thaliana RepID=RPB1_ARATH Length = 1840 Score = 129 bits (324), Expect = 1e-28 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P Sbjct: 870 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPT 929 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +LS E E L+ + E ++++ D L E+ TNGD +P+N+ R IWNAQ Sbjct: 930 YLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQ 989 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + + E++ V +L ERL+VV G D LSVEAQ+NAT+ F+ L+R Sbjct: 990 KTFKIDLRK--ISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLR 1044 [73][TOP] >UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SXC0_RICCO Length = 1855 Score = 129 bits (323), Expect = 2e-28 Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ + + P Sbjct: 868 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPT 927 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ + + L+ + E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 928 YMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQ 987 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E + V +L ERL VV G D LSVEAQ+NAT+ F L+R Sbjct: 988 KTFKVDKRRP--SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLR 1042 [74][TOP] >UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=Q2PYS1_9FUNG Length = 1015 Score = 129 bits (323), Expect = 2e-28 Identities = 70/179 (39%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173 V+Y GTVRNS G+++QF YGEDGMD +E Q + ++ K +K+Y++D + Sbjct: 790 VKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEKFEKSYKVDVMDKEKGFK 849 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P L + + + + + + +E Q+ +D RVLRE + T+GD+ +P NL RL+WN Sbjct: 850 PGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWN 909 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ +P + L ++I V+ L +RLVVV GSD LS EAQ NAT+++ L+R Sbjct: 910 AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEAQLNATLLYQCLLR 966 [75][TOP] >UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus RepID=A1YIB9_ALLMA Length = 1008 Score = 129 bits (323), Expect = 2e-28 Identities = 71/181 (39%), Positives = 112/181 (61%), Gaps = 5/181 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT-----RD 167 V+Y GTVRN+QG ++QF YGEDGMD R+E Q+ E L+ + + ++ YRID T + Sbjct: 778 VKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFERRYRIDLTDPEGKKG 837 Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347 + P + + +++ V+Q + E Q++ED LR + GD + +P N+ R+I Sbjct: 838 LKPGSVEFGIQQEMQS-IEVQQLLDQEYRQLEEDRERLR-HIFPRGDARWPLPGNIQRII 895 Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 WNAQ F +P + L + V+ +VR+LC++L+V+ G+D +SVEAQRNAT++ LV Sbjct: 896 WNAQNLFKIDKTKP--SNLHPEYVVNEVRKLCDKLMVIPGTDKISVEAQRNATLLSQILV 953 Query: 528 R 530 R Sbjct: 954 R 954 [76][TOP] >UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana RepID=B7SNX3_PERAE Length = 1009 Score = 128 bits (322), Expect = 2e-28 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK + YR + + P Sbjct: 786 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFLNVYRYEIDNENWNPG 845 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 846 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 905 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 906 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLR 960 [77][TOP] >UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio picticaulis RepID=Q1ACS6_9ASTR Length = 240 Score = 128 bits (321), Expect = 3e-28 Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ Y+ + + P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKIKRREFNRLYKYELDDENWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ + E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLR 194 [78][TOP] >UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea muscipula RepID=Q1ACU5_DIOMU Length = 240 Score = 127 bits (320), Expect = 4e-28 Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS G V+QFLYGEDGMDAV IE Q + LK ++ KAYR + + P Sbjct: 20 VKYDGTVRNSLGCVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFLKAYRFEYDDPNWNPK 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ + E L++ P E+++++ D +L ++ T GD +P+NLARLI NAQ Sbjct: 80 YIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F K G + L E++ V +L ERL VV G D LS EAQRNAT+ F+ L+R Sbjct: 140 KLF--KIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDDHLSDEAQRNATLFFNILLR 194 [79][TOP] >UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI48_9CHLO Length = 1694 Score = 127 bits (320), Expect = 4e-28 Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 5/181 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA +E Q + L+ D K + + +D + Sbjct: 848 VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFKRTFHLDPDEPNFGKG 907 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 W+S + L + E Q+K D R +V+T GD V++P+NL R++WNAQ Sbjct: 908 WMSEAQANDLANSVEKRALLEAEWEQLKLD-RAELHKVMTTGDPSVHLPVNLKRIVWNAQ 966 Query: 360 TKFNC--KPHRPG--WTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 + PG LQ VI VR + L VV G D LS+EAQRN+TI+F +LV Sbjct: 967 KNYGLVKDTSAPGRERDELQAVNVIESVRSMLNGLTVVPGGDELSLEAQRNSTILFFALV 1026 Query: 528 R 530 R Sbjct: 1027 R 1027 [80][TOP] >UniRef100_A1YIB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mucor hiemalis RepID=A1YIB5_9FUNG Length = 1009 Score = 127 bits (320), Expect = 4e-28 Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179 V+Y GTVRNS GD+++F YGEDGMDA+ +E Q F LK + + +K Y+ID + Sbjct: 781 VKYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFEKRYKIDVMNKGFKKG 840 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 LS +++ + + E Q+ ED LR + NGD+K +P+NL RLI N+Q Sbjct: 841 ALSYNVLKSIEGSETAQAYLDHEFYQLTEDRNKLRTNIFKNGDDKWPLPVNLTRLITNSQ 900 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P +P + + +++ V L +RL+VV GSD +S E Q+NAT++F L+R Sbjct: 901 QIFHIDPRKP--SDIHPLQIVDGVNALAQRLLVVRGSDKISNETQKNATLLFGILLR 955 [81][TOP] >UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CBQ3_YARLI Length = 1750 Score = 127 bits (319), Expect = 5e-28 Identities = 68/176 (38%), Positives = 104/176 (59%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRNS GDV+QF+YGEDG+D ++E Q + + ++ Y+ID Sbjct: 855 VQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFERRYKIDLMNPKTKP- 913 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 L+ E + D V++ + +E Q+ D R+LREEV TNGD +P+N+ R++ N+Q Sbjct: 914 LNIESGNDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQR 973 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 FN + + L + E++ V+ LC+RL +V G L+ EAQ NAT++F LVR Sbjct: 974 IFNVDKSKV--SDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCLVR 1027 [82][TOP] >UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S3M0_OSTLU Length = 1646 Score = 127 bits (318), Expect = 7e-28 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPP-- 176 V+Y GTVRNS GDV+QFLYGEDGMDA IE Q + L++ + + ID D+P Sbjct: 844 VKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSIDTLRFSVKEFAAKFHIDP--DVPGFN 901 Query: 177 -DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 WLS E+ L V + + E +++ D RV + GD V++P+N+ R++WN Sbjct: 902 NGWLSEEQASELAHTAKVREILDAEWDRLQRD-RVELRTICPTGDPHVHLPVNMKRILWN 960 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ ++ G ++V +I V EL +L+VV G+D LSVEAQRN T++F + VR Sbjct: 961 AQKQYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVR 1019 [83][TOP] >UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus RepID=Q1L5Y7_ANTMA Length = 780 Score = 126 bits (317), Expect = 9e-28 Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q E LK + + YR + + + P Sbjct: 545 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRYEIDSSNWNPS 604 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ +E E L+T + E+ +++ D L + T GD +P+N+ RL+ NAQ Sbjct: 605 YMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQ 664 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV+G D LS+EAQ+NAT+ F+ L+R Sbjct: 665 KTFKVDFRRP--SDMHPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLR 719 [84][TOP] >UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1EA31_9CHLO Length = 1720 Score = 126 bits (317), Expect = 9e-28 Identities = 74/182 (40%), Positives = 100/182 (54%), Gaps = 6/182 (3%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR-DMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDA +E Q + L+ K K + +D Sbjct: 845 VKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRDSREKFRKRFHMDPDEPGFGRG 904 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 W+S + L + +E ++ +D LR ++ GD+ V++P+NL R+IWNAQ Sbjct: 905 WMSEAQVNDLANSAEKRALLEEEWERLLKDREELR-RTMSTGDQNVHLPVNLKRIIWNAQ 963 Query: 360 TKFN-----CKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524 + G LQ VI V+ + LVVV G D LSVEAQRNATI+F +L Sbjct: 964 NNYRKVKDASSGGSRGGEELQAVHVIESVKSMLNGLVVVPGRDALSVEAQRNATILFFAL 1023 Query: 525 VR 530 VR Sbjct: 1024 VR 1025 [85][TOP] >UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis RepID=Q2TUN5_EPHVI Length = 1013 Score = 126 bits (316), Expect = 1e-27 Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V+Y TVRNS GDV+QFLYGEDGMDAVRIE Q ++LK + D+ ++ + ++ P Sbjct: 790 VKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFDETFKHELGQENWHPT 849 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E + ++ + + E +++ D R L E+ G+ +P+NL RLIWNAQ Sbjct: 850 YMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQ 909 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F P + + +Q E++ + +L ERL VV G D LS EAQ+NAT+ F+ L+R Sbjct: 910 KIFKVDPRKT--SDMQPLEIVDTIDKLQERLKVVPGDDPLSFEAQKNATLFFNILLR 964 [86][TOP] >UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia integrifolia RepID=Q1ACT7_MACIN Length = 240 Score = 126 bits (316), Expect = 1e-27 Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV E Q + LK ++ +K +R P Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWTETQKLDSLKMKKSEFNKVFRYGIDDESWNPS 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T GD +P+NL RLIWNAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ + L+R Sbjct: 140 KTFKVDLRRP--SDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFLNILLR 194 [87][TOP] >UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=A1YIB6_9FUNG Length = 1018 Score = 126 bits (316), Expect = 1e-27 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRNS G+++QF YGEDGMD +E Q + ++ K +K+Y++D Sbjct: 788 VKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMANDKFEKSYKVDVMDKEKGFK 847 Query: 183 LSAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 E+ L+ + + + + +E Q+ +D RVLRE + T+GD+ +P NL RL+WN Sbjct: 848 SGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWN 907 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ +P + L ++I V+ L +RL+VV GSD LS EAQ NAT+++ L+R Sbjct: 908 AQNIFHIDKRKP--SNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEAQLNATLLYQCLLR 964 [88][TOP] >UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans RepID=A1YIA8_9ASCO Length = 1001 Score = 125 bits (315), Expect = 1e-27 Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 3/180 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT---RDMP 173 V+Y GTVRNS GD++ F+YGEDG+DA +E Q+ + ++ A ++AYR+D T R +P Sbjct: 773 VKYDGTVRNSLGDIINFVYGEDGLDAASVEYQVLDTMRLSNAAFEEAYRVDVTDPDRTIP 832 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P + E + D V++ + E ++ ED R L+ + +GD +P+NL R+I N Sbjct: 833 PSFF--EPGHDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSSWPLPVNLDRIILN 890 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRM 533 ++ F+ PHR T L ++ T VR+L RL++V G+D +S E Q+ AT +F LVRM Sbjct: 891 SKQIFHIAPHRR--TDLSPAKIYTGVRDLLSRLIIVRGNDRISKEHQQQATGLFQILVRM 948 [89][TOP] >UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces macroporosum RepID=Q2PYR0_9FUNG Length = 999 Score = 125 bits (314), Expect = 2e-27 Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176 V+Y GTVRNS GD++QF YGEDGMD R+E Q + A K YRID + P Sbjct: 774 VKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFKKKYRIDISEPQVFKP 833 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD-EKVNIPLNLARLIWN 353 Y L +PA + + E Q+ +D LR + N +K +P+NL RLIWN Sbjct: 834 GSCEQSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWN 893 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A F +P T L VI V EL E L+VV G+D LS+EAQ+NAT++F L+R Sbjct: 894 ACHTFGIDRSKP--TDLNPLHVIKSVNELMENLLVVRGNDQLSIEAQKNATLLFSILLR 950 [90][TOP] >UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis RepID=Q2PYR1_9FUNG Length = 1022 Score = 125 bits (313), Expect = 3e-27 Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y G+VRNS G +VQF YGEDGMD+ +EGQ +++ K + Y + D+ + P Sbjct: 797 VQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSVNLVRYSDKKFESTYFVDVMDSEKSFP 856 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 L + + + V++ + DE Q+KED +LR+ + +G+ + +P+NL RLI N Sbjct: 857 SGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLPRLIKN 916 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ +P + L E++ K+R+L + L+V+ G+D L+ EAQ+NAT++F +R Sbjct: 917 AQQIFHIDHRKP--SNLSPVEIVEKIRKLADSLIVLRGNDSLTREAQQNATLLFQIYLR 973 [91][TOP] >UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula RepID=A7J591_9LECA Length = 1020 Score = 125 bits (313), Expect = 3e-27 Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GT+RNS GD+VQF+YGEDG+D IE Q + +K AK +K +R+D + P Sbjct: 788 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQPIDIIKCSDAKFEKDFRVDLMEEDPKTSI 847 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + + V+Q + +E Q+K LR++ D + +PLN++R++ Sbjct: 848 SPDFL--EQATEIAGNVQVQQHLDEEFEQLKAAREFLRKDKPIAADATIYLPLNISRILE 905 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A T FN K + L EVIT+V L ERLVVV G LS E Q NAT++F +L+R Sbjct: 906 TAMTTFNIK--HGSRSNLDPVEVITEVNRLLERLVVVRGDHSLSKEGQHNATLLFKALLR 963 [92][TOP] >UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SR21_9PEZI Length = 1756 Score = 124 bits (312), Expect = 3e-27 Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 2/177 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD++QFLYGEDG+DA+ IE Q ++L K D Y++D P+ L Sbjct: 864 KYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLNMSNKKFDDRYKLDVMDANKPEEL 923 Query: 186 SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359 EY + DPA +Q + +E + ED RV+RE DE + +PLN+ R++ A+ Sbjct: 924 DWLEYGNEIAGDPASQQLLDEEYEALAEDRRVVREINFRRKDDESMQLPLNIVRIMETAK 983 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 FN + + + L ++VI V + +R+ VV G DGLS EA NATI+F + +R Sbjct: 984 KLFNVQDFQR--SDLTPQDVIPAVSSMLDRMTVVRGPDGLSKEADYNATILFKAHIR 1038 [93][TOP] >UniRef100_A7J5B1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teloschistes exilis RepID=A7J5B1_9LECA Length = 1003 Score = 124 bits (312), Expect = 3e-27 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +RID D P + Sbjct: 772 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 831 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SAE E + D V+Q + +E Q+K LR+ + + + +PLN+ R++ A Sbjct: 832 SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 890 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 T FN K + L EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R Sbjct: 891 MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 946 [94][TOP] >UniRef100_A7J588 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterodermia vulgaris RepID=A7J588_9LECA Length = 996 Score = 124 bits (312), Expect = 3e-27 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +RID D P + Sbjct: 765 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDDNPRTTV 824 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SAE E + D V+Q + +E Q+K LR+ + + + +PLN+ R++ A Sbjct: 825 SAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKN-KKDDSQDLQLPLNIPRILETA 883 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 T FN K + L EVIT+V +L +RLVVV G D LS E Q NAT++F +L+R Sbjct: 884 MTTFNIK--NGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 939 [95][TOP] >UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi RepID=Q8MX30_NAEGR Length = 1590 Score = 124 bits (311), Expect = 4e-27 Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 20/196 (10%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP--- 173 V+Y GTVR++QG+VVQFLYGEDGMDA ++E Q + + AK Y ++ P Sbjct: 793 VKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFT 852 Query: 174 ----------------PDWLSAEEYEALRTDPAVE-QAMRDEMAQIKEDLRVLREEVLTN 302 ++S + Y+ + DPA +R+E + ED +LR E+ N Sbjct: 853 NPTESSVSMPSGGILKESFISTKVYDEILKDPATYLSKVREEYKTLMEDRHILRTEIFPN 912 Query: 303 GDEKVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLS 482 + K+ +P+NL R+I NAQ ++ P + + VI K+++LC+ LVV+ G+D LS Sbjct: 913 AENKIVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELS 972 Query: 483 VEAQRNATIMFHSLVR 530 EAQ NAT++F +R Sbjct: 973 TEAQTNATLLFSMFLR 988 [96][TOP] >UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis RepID=Q2PYQ9_9FUNG Length = 845 Score = 124 bits (311), Expect = 4e-27 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID---TTRDMP 173 V+Y GTVRNS GDV+QF YGEDGMDA +E Q L ++ YR+D T + Sbjct: 620 VKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFERRYRLDVLNTKGGLK 679 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P+ L + + + V+ + +E Q++ED L + + GD K +P NL RLI N Sbjct: 680 PNTLEFDVQRQIEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITN 739 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ +P + L +I VR+L E L+VV GSD +SVEAQRNAT+++ L+R Sbjct: 740 AQQIFHIDRRKP--SDLNPVNIIEGVRKLSEELLVVRGSDKISVEAQRNATLLYQILLR 796 [97][TOP] >UniRef100_A7J592 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyxine subcinerea RepID=A7J592_9LECA Length = 1015 Score = 124 bits (311), Expect = 4e-27 Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GT+RNS GD+VQFLYGEDG+D IE Q+ + +K A+ +K +R+D D P + Sbjct: 784 KYDGTIRNSLGDIVQFLYGEDGLDGATIEPQLLDIIKCSDARFEKMFRVDLMEDDPRTSI 843 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SAE E + + V+Q + E Q+K LR+ T+ +E++ +PLN+ R++ A Sbjct: 844 SAEFLEQATEVAGNIEVQQYLDQEFEQLKAAREFLRKN-KTDENEQLQLPLNVIRILDTA 902 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T FN K + L EVI +V +L +RLVVV G D LS E+Q NAT++F + +R Sbjct: 903 KTTFNIK--TGARSNLHPAEVIPQVNDLLDRLVVVRGDDALSKESQHNATLLFKAQLR 958 [98][TOP] >UniRef100_Q1ACT0 RNA polymerase II largest subunit (Fragment) n=2 Tax=Cucurbitaceae RepID=Q1ACT0_9ROSI Length = 240 Score = 123 bits (309), Expect = 7e-27 Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + ++ +R + + P+ Sbjct: 20 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPN 79 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ E E L+T E+ +++ D L E+ T G+ +P+NL RLI NAQ Sbjct: 80 YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEITTTGENSWPMPVNLKRLIQNAQ 139 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F R + + E++ + +L ERL VV G D LSVEAQ+NAT+ F+ L+R Sbjct: 140 KTFKIDFRRA--SDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 194 [99][TOP] >UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea scutellifera RepID=A5H2F1_9LECA Length = 993 Score = 123 bits (309), Expect = 7e-27 Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GT+RNS GD+VQF+YGEDG+D IE Q + + AK +K +R+D + P Sbjct: 763 KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQKLDIIVCSEAKFEKDFRVDLMDNNPRTTI 822 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + TD V++A+ +E Q+K LR+ + E + +PLN+ R++ Sbjct: 823 SPDFL--EQATVIATDQKVQKALDEEYEQLKAAREFLRKN-KKDASEDLQLPLNIPRILE 879 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A T FN K + L EVIT V L +RLVVV G D LS E Q NAT++F +L+R Sbjct: 880 TAMTTFNIK--NGSRSNLDPVEVITDVNNLLDRLVVVRGDDPLSREGQHNATLLFKALLR 937 [100][TOP] >UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK89_PHYPA Length = 1646 Score = 123 bits (308), Expect = 1e-26 Identities = 72/176 (40%), Positives = 101/176 (57%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK A+ ++ Y+ + RD DW Sbjct: 871 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFNRVYKFEIDRD---DW 927 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 P E+++++ D R + E+ G+ +P+NL RLIWNAQ Sbjct: 928 -----------SPDYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQK 976 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P + + E++ V +L ERL VV G D +S+EAQRNAT+ F L+R Sbjct: 977 IFKVDFRKP--SDMHPMEIVEAVDKLQERLRVVPGDDQISMEAQRNATLFFGCLLR 1030 [101][TOP] >UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium dendrobatidis RepID=Q2PYS7_BATDE Length = 985 Score = 122 bits (307), Expect = 1e-26 Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMPP 176 +Y GTVRN+ GD+VQF YGEDGM+ ++E Q + A ++YR+D + P Sbjct: 769 KYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVDILDGVHKLKP 828 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTN-GDEKVNIPLNLARLIWN 353 + L + + +P + +E Q+ ED +LR+++ N +K +P+NL RLIWN Sbjct: 829 NKLEYRIIDDMSQNPEAQVKFDEEFEQLAEDRLMLRQQIFPNTSTDKWALPVNLERLIWN 888 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+ F+ ++P + L VI KV+ L + LVVV G D LS+EAQ NAT++F L+R Sbjct: 889 ARNTFHLDRNKP--SDLHPMHVIDKVKALLDNLVVVRGKDELSLEAQYNATLLFQILLR 945 [102][TOP] >UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp. GE13 RepID=Q2PYP9_9FUNG Length = 813 Score = 122 bits (307), Expect = 1e-26 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173 ++Y GTVRNS G ++QF YGEDGMD +E Q E ++ AK +K Y+ID T + Sbjct: 587 IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 646 Query: 174 PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 P L E L + V++ + +E ++ED ++ RE + NGD +P+N+ RLIW Sbjct: 647 PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 706 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F+ + + L + K EL +RLVVV G D LS EAQ N+TI F +L++ Sbjct: 707 NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 764 [103][TOP] >UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix frontalis RepID=A1YIC6_NEOFR Length = 1004 Score = 122 bits (307), Expect = 1e-26 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR---DMP 173 ++Y GTVRNS G ++QF YGEDGMD +E Q E ++ AK +K Y+ID T + Sbjct: 773 IKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLK 832 Query: 174 PDWLSAEEYEAL-RTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 P L E L + V++ + +E ++ED ++ RE + NGD +P+N+ RLIW Sbjct: 833 PKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIW 892 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F+ + + L + K EL +RLVVV G D LS EAQ N+TI F +L++ Sbjct: 893 NAQNIFSINKRKE--SDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIK 950 [104][TOP] >UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora RepID=A9QMP5_9BILA Length = 474 Score = 122 bits (306), Expect = 2e-26 Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G ++Q YGEDG+D + +E Q +K A +K +++D + D Sbjct: 71 VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQTMPTMKPSNALFEKEFKLDLSDDKAVRK 130 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + E+ L+ D V + + E Q++ED R+LR ++ GD K+ +P NL RLIWNAQ Sbjct: 131 VYTEDLIRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 189 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R Sbjct: 190 KIFHVETRQP--TSLNPLRVIQGVRELSEKLVIVCGDDRISKQAQYNATLLMNILLR 244 [105][TOP] >UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W4S0_PYRTR Length = 1742 Score = 122 bits (306), Expect = 2e-26 Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMP-- 173 V+Y GTVRNS GD+V+F+YGEDG+D IE Q + + A + AY++D T D P Sbjct: 861 VKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCSDADFEAAYKLDVLTTDQPEI 920 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P W E + D V++A+ +E QIK D VLR+ + + +PLN+ R+I + Sbjct: 921 PVW-KLEGSPMFQGDVDVQRALDEEFEQIKNDRAVLRDTLNEEELDSFQLPLNIQRMIRS 979 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ +F P + + L E I +VRE +RL+V+ G+D LS+EAQ +AT +F + +R Sbjct: 980 AQARFGINPEK-AVSNLTPIEAIQQVRETLDRLIVIRGTDELSIEAQNSATQLFKAHLR 1037 [106][TOP] >UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5E6J4_LODEL Length = 1745 Score = 122 bits (306), Expect = 2e-26 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPD 179 V Y GT RNS GD++QF+YGEDG+DA ++E Q + + ++ YRID ++ Sbjct: 844 VHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIPGSDESFERRYRIDVLEKNASIS 903 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 E E ++ D +++ + +E Q+ ED + LR+ V NGD +P+NL R+I NAQ Sbjct: 904 TNLLESGEEIQGDVELQKILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQ 963 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P + L++ E++ VR+LC + +VV G L EAQ NAT++F LVR Sbjct: 964 QIFHSGRDKP--SDLRLDEIVESVRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVR 1018 [107][TOP] >UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas RepID=Q23699_CRAGI Length = 1340 Score = 122 bits (305), Expect = 2e-26 Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179 V+Y GTVRN +VQ YGEDG+DA +E Q LK ++ ++ D T + Sbjct: 784 VKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNERNMKK 843 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 LS E + L D + E Q++ED +LR + GD KV +P NL R+IWNAQ Sbjct: 844 CLSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQ 902 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F H+P T L +V+ V +LC+RL+VV G D LS++A NAT++F L+R Sbjct: 903 KIFRIDTHKP--TDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIR 957 [108][TOP] >UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9WN64_CANDC Length = 1735 Score = 122 bits (305), Expect = 2e-26 Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID--TTRDMPP 176 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YRID T++M Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYRIDILDTKNMIS 909 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA Sbjct: 910 ESL-IESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ +R + L+++E+I VRELC++L+VV G L EAQ NAT++F L+R Sbjct: 969 QQIFHNGRYRA--SDLRLEEIIFGVRELCKKLLVVRGDTPLVKEAQENATLLFQCLLR 1024 [109][TOP] >UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y387_SORBI Length = 1874 Score = 121 bits (304), Expect = 3e-26 Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y GTVRNS GDVVQF+YGEDGMDAV IE Q + LK + D +R + + P+ Sbjct: 868 VKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQNLDSLKMKKEEFDTVFRYELDDENWRPN 927 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +L ++ L+T + E+ +++ D L E+ TNG +P+NL RLIWNAQ Sbjct: 928 YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F K + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+ +R Sbjct: 988 KTF--KIDIRTCSDMHPIEIVEAIDKLQERLKVVPGDDAISIEAQKNATLFFNIHLR 1042 [110][TOP] >UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum RepID=B7SNX1_TOBAC Length = 1010 Score = 120 bits (302), Expect = 5e-26 Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176 V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK + D AY ID + P Sbjct: 787 VKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFDDLYAYEIDDP-NWNP 845 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 ++ E E L+T + E+ +++ D + L E+ GD +P+N+ RL+ NA Sbjct: 846 SYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVLNA 905 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F R + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 906 QKTFKIDFRRR--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 961 [111][TOP] >UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae RepID=Q2PYS0_9FUNG Length = 1007 Score = 120 bits (302), Expect = 5e-26 Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 8/184 (4%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G +VQF YGEDGMDA IE Q F+ L+ + + Y + P Sbjct: 780 VNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTV---KPSGE 836 Query: 183 LSAEE--------YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLA 338 L+ + +A + A +A+ DE AQ+ D +LR V T+G+ + +P+N+ Sbjct: 837 LNVDSALFDNDAFLDAGISYLAFNKALADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIK 896 Query: 339 RLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFH 518 RLI NAQ F+C HRP T L VI+ V L + L V+ G+D LS EA NATI+F Sbjct: 897 RLIRNAQVMFHCHAHRP--TNLHPSLVISTVERLLKGLTVIRGNDALSEEANTNATILFK 954 Query: 519 SLVR 530 LVR Sbjct: 955 VLVR 958 [112][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 120 bits (301), Expect = 6e-26 Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 6/182 (3%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID----TTRDM 170 V+Y GTVRNS G VVQF+YGEDGMDA +E Q E ++ + + Y++D TR Sbjct: 790 VKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEEEFKRRYKLDLMTPETRKW 849 Query: 171 PPDWLSAEEYEALRTDPAVEQA--MRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARL 344 P ++ + L D E A + E Q+ ED V+R + NGD +P N+ RL Sbjct: 850 LPTVVTNDVRHELLGDGMDENAKVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRL 909 Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524 IWNA+ K + L+ +E++ V +L R +V+ G DGLS AQ NAT++F+ L Sbjct: 910 IWNARNM--AKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDGLSTMAQHNATLLFNIL 967 Query: 525 VR 530 VR Sbjct: 968 VR 969 [113][TOP] >UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus redivivus RepID=A9QMH0_PANRE Length = 636 Score = 120 bits (300), Expect = 8e-26 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G ++Q YGEDG+D + +E Q +K + +K Y ++ D Sbjct: 83 VNYDGTVRNSVGQLIQVRYGEDGLDGMWVESQTLPTMKLTNSLFEKKYHLNIHDDKEMSR 142 Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 L S + LR DP V++ + E ++ ED +LR E+ GD K +P NL RLIWNAQ Sbjct: 143 LYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQ 201 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P T L +I VR+L +RLV+V G+D +S +AQ NAT++ + L+R Sbjct: 202 KIFHVDLRKP--TELHPATIIEGVRKLGDRLVIVSGTDKISRQAQENATLLMNILLR 256 [114][TOP] >UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151A8B3 Length = 1018 Score = 119 bits (299), Expect = 1e-25 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YR+D + P+ Sbjct: 116 VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 172 Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 E + +R D +++ + +E Q+ D R LRE TNGD +P+NL R+I Sbjct: 173 CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 232 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F+ H+ + L+++E++ V+ELC++L+V+ G L E+Q NAT++F LVR Sbjct: 233 NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 290 [115][TOP] >UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122 RepID=A9QMD9_9BILA Length = 595 Score = 119 bits (299), Expect = 1e-25 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V Y GTVRNS G ++Q YGEDG+D + +E Q +K A + +++D T + M Sbjct: 42 VNYDGTVRNSIGQMIQLRYGEDGLDGMWVENQQMLTMKPTNAVFESEFKLDITDEKMLRK 101 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 S + L P + + E AQ++ED R+LR ++ NGD K+ +P NL RLIWNAQ Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL +L++V G D +S +AQ NAT++ + L+R Sbjct: 161 KIFHIELRKP--TDLSPLRVIEGVRELSRKLIIVSGEDRISKQAQYNATLLMNILLR 215 [116][TOP] >UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1 Tax=Pichia guilliermondii RepID=RPB1_PICGU Length = 1579 Score = 119 bits (299), Expect = 1e-25 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ YR+D + P+ Sbjct: 682 VHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDL---LDPEK 738 Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 E + +R D +++ + +E Q+ D R LRE TNGD +P+NL R+I Sbjct: 739 CIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQ 798 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F+ H+ + L+++E++ V+ELC++L+V+ G L E+Q NAT++F LVR Sbjct: 799 NAQQLFHGGRHKA--SDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVR 856 [117][TOP] >UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054 RepID=UPI0000F24379 Length = 1739 Score = 119 bits (298), Expect = 1e-25 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ +RI D+++ +P Sbjct: 850 VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 L E + ++ D +++ + +E Q+ +D + LRE NGD +P+NL R+I N Sbjct: 910 ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ ++ + L++ EVI VR LCE+L+VV G L EAQ NAT++F LVR Sbjct: 968 AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024 [118][TOP] >UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L5Y6_SOLLC Length = 773 Score = 119 bits (298), Expect = 1e-25 Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDK--AYRIDTTRDMPP 176 V+Y GTVRNS GDV+QFLYGEDGMD+V IE Q + LK D AY ID + P Sbjct: 545 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDP-NWNP 603 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 ++ E E L+ + E+ +++ D L E+ GD +P+N+ RL+ NA Sbjct: 604 SYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNA 663 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F RP + + E++ V +L ERL VV G D LS+EAQ+NAT+ F+ L+R Sbjct: 664 QKTFKIDFRRP--SDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLR 719 [119][TOP] >UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae RepID=A9QMG0_OSCTI Length = 629 Score = 119 bits (298), Expect = 1e-25 Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPD 179 V Y GTVRNS G +VQ YGEDG+D + +E Q+ +K A ++ +++D + + M Sbjct: 82 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQVMSTMKPSNALFERDFKLDLSDEKMMRR 141 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 S + Y L+ +P + + +E AQ++ED R+LR + NGD KV +P NL RLIWNAQ Sbjct: 142 CYSEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQ 200 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + T L VI V+ L ++L++V G D +S +AQ NAT++ + L+R Sbjct: 201 KIFHVETREV--TSLNPLAVIRGVKNLSDKLIIVGGEDRISRQAQFNATLLMNILLR 255 [120][TOP] >UniRef100_A9Q9R3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria fuscula RepID=A9Q9R3_9EURO Length = 999 Score = 119 bits (298), Expect = 1e-25 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D P W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKPVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951 [121][TOP] >UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GID7_PICST Length = 1739 Score = 119 bits (298), Expect = 1e-25 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ +RI D+++ +P Sbjct: 850 VHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRIDVLDSSKSIP 909 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 L E + ++ D +++ + +E Q+ +D + LRE NGD +P+NL R+I N Sbjct: 910 ESLL--ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQN 967 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ ++ + L++ EVI VR LCE+L+VV G L EAQ NAT++F LVR Sbjct: 968 AQQIFHNGRYKA--SDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVR 1024 [122][TOP] >UniRef100_A1YIB7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glomus mosseae RepID=A1YIB7_GLOMO Length = 1054 Score = 119 bits (298), Expect = 1e-25 Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 17/193 (8%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------ 164 V+Y GTVRNS GD++QF YGEDGMDA +E Q + L DK Y ++ + Sbjct: 807 VKYDGTVRNSLGDILQFCYGEDGMDACYVESQNIDSLPISNDTFDKKYLVELPKPEEKEK 866 Query: 165 -----------DMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDE 311 + L E+ + D V+ ++ E Q+KED +L+ + GD Sbjct: 867 EKEEKEKENKEEKKKQELEQEKAKIKSHDEIVKDKIKAEYEQLKEDRHLLQTFIFPKGDN 926 Query: 312 KVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEA 491 + +P+N+ RLI NAQ KF P + + LQ +VI + EL +L VV G D +SVEA Sbjct: 927 RWPLPVNIKRLIKNAQQKFKIIPSQRTKSDLQFVDVIDSIDELLSKLEVVKGKDRISVEA 986 Query: 492 QRNATIMFHSLVR 530 Q NAT++F L+R Sbjct: 987 QSNATLLFKILIR 999 [123][TOP] >UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius elegans RepID=Q6JTX1_9BILA Length = 304 Score = 119 bits (297), Expect = 2e-25 Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRN+ +VQ YGEDG+DAV +E Q +K A +K +++ T+ + Sbjct: 4 VQYDGTVRNAHQALVQLRYGEDGLDAVAVEFQSLPTMKPSNAAFEKRFKLQTSNERYLRR 63 Query: 183 L-SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 L + ++ TD V QA+ E Q+K D ++R ++ GD +V +P NL R++WNAQ Sbjct: 64 LYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQ 122 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ K G T L V+ + EL ++LV+V G D LS EAQ NATI+ ++++R Sbjct: 123 KIFHIKGR--GTTDLHPVRVVEGLNELMKKLVIVKGEDRLSREAQENATILMNTMLR 177 [124][TOP] >UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi RepID=A9QMR2_9BILA Length = 284 Score = 119 bits (297), Expect = 2e-25 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D T + Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPSNAVFEKQFKLDITDEKAIKK 141 Query: 183 LSAEE--YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + E+ +E ++ + + +E AQ++ED R+LR+ T D KV +P NL RLIWNA Sbjct: 142 VYTEDVIHELQQSTSDALKKVEEEWAQLQEDRRLLRKIFPTGDDRKVVLPCNLKRLIWNA 201 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ + +P T L VI ++EL ++L++V G D +S +AQ NAT++ + L+R Sbjct: 202 QKIFHVETRKP--TSLSPLRVIDGIKELSKKLIIVSGDDSISKQAQYNATLLMNILLR 257 [125][TOP] >UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina RepID=A9QMF3_9BILA Length = 626 Score = 118 bits (296), Expect = 2e-25 Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D + +EGQM +K A +K +++D + D Sbjct: 78 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDDRSLRR 137 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + +EE L+ + + DE Q++ED R+LR ++ GD KV +P NL RLIWNAQ Sbjct: 138 IYSEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQ 196 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + T L VI VR + ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 197 KIFKVETRKV--TALNPLRVIEGVRNVSKKLVIVSGDDRISKQAQYNATLLMNILIR 251 [126][TOP] >UniRef100_Q5I3D2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Clavaria zollingeri RepID=Q5I3D2_CLAZO Length = 253 Score = 118 bits (296), Expect = 2e-25 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 4/182 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS GD++QF+YGEDG+D IE Q + + ++AYR+D T P Sbjct: 29 VCYDGTVRNSLGDLIQFVYGEDGIDGAFIERQFIDTYGYSHKAFERAYRVDVTD--PARG 86 Query: 183 LSAEEYEALRTDPAVE-QAMRD-EMAQIKEDLRVLREEVLTNGD--EKVNIPLNLARLIW 350 S + D ++E QA D E +Q+++D +VLRE + D E+ ++P+NL+R+ Sbjct: 87 FSPGVLQVGLDDSSLELQAKLDEEYSQLRDDRKVLREFIFPRADPAEQHSLPVNLSRIAQ 146 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F +P + L+ +I V+ELC+RLVVV G D LS EAQ NAT+MF R Sbjct: 147 NAQQIFRIDRRKP--SDLEPAYIIDSVKELCKRLVVVPGDDPLSREAQDNATLMF----R 200 Query: 531 MH 536 MH Sbjct: 201 MH 202 [127][TOP] >UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB RepID=A1YIB1_9BASI Length = 1013 Score = 118 bits (296), Expect = 2e-25 Identities = 66/176 (37%), Positives = 102/176 (57%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS GD+VQF+YGEDG+D +E Q + ++ K DK +R+D T Sbjct: 786 VTYDGTVRNSLGDIVQFVYGEDGVDGGTVEYQNLDPVRLSNEKFDKKFRVDVTDPAMTYK 845 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 + + A++ + E Q+ +D ++LRE + T+G+ + +P+N+ R+I NAQ Sbjct: 846 AGVLQVGLDDSSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQ 905 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P + L ++I V +LC RL+VV G D LS AQ NAT++F L+R Sbjct: 906 IFHIDFRKP--SDLPPPDIIQMVNDLCNRLIVVRGDDALSRAAQXNATLLFRILLR 959 [128][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 118 bits (295), Expect = 3e-25 Identities = 69/177 (38%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y T+RNS GD++QF+YGEDGMDAV +E Q E +K + K Y+ + R+ Sbjct: 860 VQYDSTLRNSIGDIIQFVYGEDGMDAVYVENQKLESMKMGDKEFGKVYKFEPDARNFGDG 919 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++ A+ + +R + E Q+ D LRE + T+ + +P+NL RLIWNAQ Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESIPTD-ENTWPLPVNLKRLIWNAQ 978 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P + L ++I V L ++LVV+ G D LSVEAQ NAT++F LVR Sbjct: 979 KIFHIDVRKP--SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQANATMLFQILVR 1033 [129][TOP] >UniRef100_A9Q9S3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella mucosa RepID=A9Q9S3_9EURO Length = 999 Score = 118 bits (295), Expect = 3e-25 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +RID W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISLSDNAFEKQFRIDLMEPKKLAW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLRE--EVLTNGDEKVNIPLNLARLIWN 353 E+ ++ D V++ E Q+ ED R LR+ + T+ DE + +P+N+ R++ Sbjct: 835 QGRLEQASEIQGDVDVQKLFDQEYDQLVEDRRFLRDIKQAATSSDEMMPLPMNIVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F+ + P + L VI KV++L +RLVVV G+D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFHIQSGAP--SDLHPSYVIPKVKQLLDRLVVVRGTDRISLEAQENATLLIKAQLR 951 [130][TOP] >UniRef100_A9Q9S2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria maura RepID=A9Q9S2_9EURO Length = 999 Score = 118 bits (295), Expect = 3e-25 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K YR+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLVVV G D +SVEAQ NAT++ + +R Sbjct: 895 ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDPISVEAQENATLLIKAQLR 951 [131][TOP] >UniRef100_A9Q9Q5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydropunctaria adriatica RepID=A9Q9Q5_9EURO Length = 988 Score = 118 bits (295), Expect = 3e-25 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K YR+D W Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLMEPKKLVW 823 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPMNVVRILNQ 883 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLVVV G D +SVEAQ NAT++ + +R Sbjct: 884 ARTTFKIQAGAP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISVEAQENATLLIKAQLR 940 [132][TOP] >UniRef100_A9Q9L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavascidium umbrinum RepID=A9Q9L8_9EURO Length = 999 Score = 118 bits (295), Expect = 3e-25 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDLMESKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KVR+L ERL VV G+D +SVEAQ NAT++ + +R Sbjct: 895 ARTTFKIRSGGP--SDLHPSYVIPKVRQLLERLTVVRGNDSISVEAQENATLLIKAQLR 951 [133][TOP] >UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR Length = 1706 Score = 117 bits (293), Expect = 5e-25 Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 11/186 (5%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR------D 167 RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L + +K + DT+ + Sbjct: 797 RYDGTLRTSSGQIVQFLYGEDGMDAVWIEKQNFDSLTLAKPEFNKRFLFDTSSPEFGHDE 856 Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332 +L + E R DP ++ + E+ ++ED +LR E D+ P N Sbjct: 857 QGIPFLEPDVIEECRRDPDIQATLDQEIEILREDQAILRIVMRSREAGRESDDSSYAPGN 916 Query: 333 LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512 + R+I NA +F +P T L EVI V L ERL+VV+G+D LSVEAQ NAT + Sbjct: 917 VRRVIHNAMRQFRIDKSKP--TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEAQSNATTL 974 Query: 513 FHSLVR 530 + L+R Sbjct: 975 YRILIR 980 [134][TOP] >UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp. EM434 RepID=A9QMQ7_9BILA Length = 398 Score = 117 bits (293), Expect = 5e-25 Identities = 68/178 (38%), Positives = 108/178 (60%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176 V Y GTVRNS +VQ YGEDG+D + +E Q +K A +K +++D + + + Sbjct: 82 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQAMPTMKPTNALFEKDFKLDLSDEKSLRK 141 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + ++E + A+++A DE Q++ED R+LR ++ +GD K+ +P NL RLIWNA Sbjct: 142 MYTEDVQHELQGSSEALKEA-EDEWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNA 199 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ + +P T L VI VREL ++L++V G D +S +AQ NAT++ + L+R Sbjct: 200 QKIFHVETRKP--TDLNPLRVIEGVRELSKKLIIVSGEDRISKQAQYNATLLMNILIR 255 [135][TOP] >UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa RepID=Q7SDN0_NEUCR Length = 1752 Score = 117 bits (293), Expect = 5e-25 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT-TRDMPPDW 182 +Y GTVRNS GD++QF+YGEDG+D + IE Q ++ DK YR+D ++ Sbjct: 865 QYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPVDHFTISNKAFDKRYRLDVMDEEVSSGE 924 Query: 183 LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLT--NGDEKVNIPLNLARLIWN 353 L A EY + L +DP V++ + E Q+ D +LRE T N D K+ +PLN+ R+I Sbjct: 925 LEALEYGKELASDPTVQELLDQEYEQLSVDRHMLREIQRTKGNNDTKMQLPLNIIRIIDT 984 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+ F K + L K+VI V+ + +R++VV G D +S EA NATI+F + +R Sbjct: 985 AKKLF--KVDETARSDLTPKDVIPAVKAMLDRMIVVRGDDPISKEADYNATILFKAQLR 1041 [136][TOP] >UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO Length = 1752 Score = 117 bits (293), Expect = 5e-25 Identities = 63/176 (35%), Positives = 102/176 (57%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 VRY GTVRN+ GD++QF YGEDG+DA +E Q+F+ L+ + +K YRID D Sbjct: 856 VRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRS--- 912 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 LS ++ D +V+ + +E Q+ D +L + + GD + +P+N+ R+I NA Sbjct: 913 LSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQ 972 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L ++I + EL +L + GSD ++ + Q NAT++F L+R Sbjct: 973 IFHLEAKKP--TDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLR 1026 [137][TOP] >UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 117 bits (292), Expect = 7e-25 Identities = 76/188 (40%), Positives = 102/188 (54%), Gaps = 11/188 (5%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT------RD 167 RY GT+R S G +VQFLYGEDGMDAV IE Q F+ L + + D+ Y + + D Sbjct: 859 RYDGTLRTSGGQIVQFLYGEDGMDAVWIERQSFDSLTLNKREFDERYLLHSDDPDFGYDD 918 Query: 168 MPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR-----EEVLTNGDEKVNIPLN 332 +L AE E R +P V+Q + EM +KED +LR E D P N Sbjct: 919 QNIPFLEAEVIEDCRHNPEVQQMLDREMEVLKEDQAMLRIIMANREAGRESDVNSYAPGN 978 Query: 333 LARLIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIM 512 + R+I NA +F P + L K+VI K+ + RLVVV+G D LSVEAQ NAT + Sbjct: 979 VKRVIQNALRQFQIDKGLP--SNLHPKDVIEKIEAMLRRLVVVVGDDLLSVEAQNNATTL 1036 Query: 513 FHSLVRMH 536 + L+R + Sbjct: 1037 YRILIRSY 1044 [138][TOP] >UniRef100_A9Q9T1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria weddellii RepID=A9Q9T1_9EURO Length = 999 Score = 117 bits (292), Expect = 7e-25 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K +R+D W Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L ERL++V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951 [139][TOP] >UniRef100_A5H2F4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nephroma parile RepID=A5H2F4_9LECA Length = 979 Score = 117 bits (292), Expect = 7e-25 Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+DAV IE Q + + + ++ +R+D P + Sbjct: 765 KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQTMDIIACSDEQFERKFRVDVMDPRPEASI 824 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 S E E L D ++ + +E Q++ LR++ DE++ +P+N+ R++ +A Sbjct: 825 SPEFLEQANELAGDLEIQGYLDEEYEQLQVAREFLRKD---KRDEQMQLPINVIRILDSA 881 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K + L EVI +VR+L ERLVVV G D LS EAQ NATI+F + +R Sbjct: 882 KTTFKIKD--GARSNLHPAEVIPQVRDLLERLVVVRGDDDLSREAQHNATILFKAQLR 937 [140][TOP] >UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii CBS767 RepID=UPI00003BD271 Length = 1749 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173 V Y G+ RNS GD++QF+YGEDG+D ++E Q + + +K YRID ++ + Sbjct: 855 VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 L E + ++ D +++ + +E Q++ D R LR+ NGD +P+NL R+I N Sbjct: 915 ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ H+ + L++ EV+ V++LC +L+V+ G L+ EAQ NAT++F L+R Sbjct: 973 AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029 [141][TOP] >UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070 RepID=Q6E223_9PELO Length = 606 Score = 116 bits (291), Expect = 9e-25 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179 V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T ++ Sbjct: 65 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDELFMKK 124 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + S + L P + + E Q++ED R+LR ++ GD K+ +P NL RL+WNAQ Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P L VI VREL ++LV+V GSD +S +AQ NAT++ + L+R Sbjct: 184 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 238 [142][TOP] >UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=O01375_9BILA Length = 631 Score = 116 bits (291), Expect = 9e-25 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS +VQ YGEDG+DAV +EGQ ++ + + +++D T + Sbjct: 78 VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 137 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 L EE + L + A+++A +E Q++ED R+LR ++ GD KV +P NL RLIWNA Sbjct: 138 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 195 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F + + T L VI +REL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 196 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 251 [143][TOP] >UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=A9QMG6_9BILA Length = 633 Score = 116 bits (291), Expect = 9e-25 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS +VQ YGEDG+DAV +EGQ ++ + + +++D T + Sbjct: 82 VNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSVFEDLFKLDLTDEKTLRK 141 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 L EE + L + A+++A +E Q++ED R+LR ++ GD KV +P NL RLIWNA Sbjct: 142 LYTEEVVRDLLGSTVALKEA-EEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 199 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F + + T L VI +REL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 200 QKIFKIETRKV--TDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQYNATLLMNILIR 255 [144][TOP] >UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=Q5ACI7_CANAL Length = 1728 Score = 116 bits (291), Expect = 9e-25 Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ Y+ID T ++ Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA Sbjct: 910 ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ +R + L+++E++ V+ELC +L+VV G L EAQ NAT++F L+R Sbjct: 969 QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024 [145][TOP] >UniRef100_Q0PQ09 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum RepID=Q0PQ09_9EURO Length = 1011 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 778 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 837 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 838 QGRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYIKKAATSADEMMPLPMNVVRILNQ 897 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL+VV G D +S+EAQ NAT++ + +R Sbjct: 898 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 954 [146][TOP] >UniRef100_Q0MVT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pallidulum RepID=Q0MVT4_9EURO Length = 1010 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 785 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKMFRVDLMEPKKLVW 844 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR ++ T+ DE + +P+N+ R++ Sbjct: 845 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRRFLRSIKKAATSADEMMPLPMNVQRILNQ 904 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 905 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 961 [147][TOP] >UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=C4YN85_CANAL Length = 1742 Score = 116 bits (291), Expect = 9e-25 Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT--TRDMPP 176 V Y GT RNS GD++QF+YGEDG+D ++E Q + + ++ Y+ID T ++ Sbjct: 850 VHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFERRYKIDVLDTENVIS 909 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + L E + +R D +++ + +E Q+ +D + LRE NGD +P+NL R+I NA Sbjct: 910 ESL-LESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNA 968 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ +R + L+++E++ V+ELC +L+VV G L EAQ NAT++F L+R Sbjct: 969 QQIFHNGRYRA--SDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLR 1024 [148][TOP] >UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii RepID=B5RSM9_DEBHA Length = 1749 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173 V Y G+ RNS GD++QF+YGEDG+D ++E Q + + +K YRID ++ + Sbjct: 855 VHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKRYRIDVLDPSKSIR 914 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 L E + ++ D +++ + +E Q++ D R LR+ NGD +P+NL R+I N Sbjct: 915 ESLL--ESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQN 972 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ H+ + L++ EV+ V++LC +L+V+ G L+ EAQ NAT++F L+R Sbjct: 973 AQQIFHNGRHKA--SDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLR 1029 [149][TOP] >UniRef100_A9Q9S6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria polysticta RepID=A9Q9S6_9EURO Length = 999 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFVYGEDGLDGAHIESQRVDIIAMSDSAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYDQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQAGAP--SDLHPTYVIPKVQQLLDRLVIVRGEDPISLEAQNNATLLIKALLR 951 [150][TOP] >UniRef100_A9Q9S5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria nigrescens RepID=A9Q9S5_9EURO Length = 999 Score = 116 bits (291), Expect = 9e-25 Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDGAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951 [151][TOP] >UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea RepID=A4RMP1_MAGGR Length = 1757 Score = 116 bits (291), Expect = 9e-25 Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 2/177 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD++QF+YGEDG+D + IE Q ++L K D Y++D P L Sbjct: 862 KYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPREL 921 Query: 186 SAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNAQ 359 +A EY + DPAV+Q + +E IK D +++RE D + +PLN+AR+I NA+ Sbjct: 922 NALEYGNEIFGDPAVQQLLDEEYDAIKADRQLIREINYKKKDDNDMQLPLNVARVIENAK 981 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + + L+ ++VI V+ ER+VVV G D +S EA N++I+F + +R Sbjct: 982 KLFKIDDAQR--SDLKPQDVIPVVKGFLERMVVVPGDDPISKEANYNSSILFKAQLR 1036 [152][TOP] >UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae RepID=UPI000186501C Length = 1956 Score = 116 bits (290), Expect = 1e-24 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 + Y GTVRNS +VQ YGEDG+DAV IE Q LK +K +++D + Sbjct: 869 IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + E+ + +D ++ + E Q++ D VLR V GD KV +P NLAR+IWNAQ Sbjct: 929 ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P T L +V+ VR+L ++LV+V G D +S++AQ NATI+F++L+R Sbjct: 988 KIFHVNTRAP--TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQANATILFNTLLR 1042 [153][TOP] >UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis plicata RepID=Q6E226_9PELO Length = 636 Score = 116 bits (290), Expect = 1e-24 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD--MPP 176 V Y GTVRNS G +VQ YG+DG+D + +E Q +K A ++ +R D T D M Sbjct: 82 VNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKPTNAVFERDFRTDLTDDNFMRN 141 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + + E ++ A+E+ + E AQ++ED R+LR ++ GD K+ +P NL RLIWNA Sbjct: 142 SYTDSVIREIQESEDAIEK-VESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNA 199 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F +P L VI VRE+ +L++V G+D +S +AQ NAT++ + L+R Sbjct: 200 QKIFKVDTRKP--VDLSPLHVIDGVREISSKLIIVSGNDDISRQAQYNATLLMNILLR 255 [154][TOP] >UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMF5_9BILA Length = 630 Score = 116 bits (290), Expect = 1e-24 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D + +E Q +K + A + +++D T Sbjct: 74 VNYDGTVRNSLAQLIQLRYGEDGLDGMWVENQSMPSMKPNNALFKRDFKLDITDTKALKK 133 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + EE L+++P + + E AQ++ED R+LR ++ GD K+ +P NL RLIWNAQ Sbjct: 134 MYTEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQ 192 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VR++ ++L++V G D +S +AQ NAT++ + LVR Sbjct: 193 KIFHVETRKP--TDLHPLRVIEGVRDMAKKLIIVGGEDRISKQAQYNATLLMNILVR 247 [155][TOP] >UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium replicatum RepID=Q2PYS3_9FUNG Length = 981 Score = 116 bits (290), Expect = 1e-24 Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 6/182 (3%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR++ G++VQF+YG+DGMD ++E Q E +K K + Y +D Sbjct: 759 VKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFRETYFVDAKESC---- 814 Query: 183 LSAE--EYEALR---TDPAVEQAMRDEMAQIKEDLRVLREEVL-TNGDEKVNIPLNLARL 344 +S E EY ++ V++ + +E Q+ ED RVLREE+ + +P+NL R+ Sbjct: 815 ISYELVEYHVVKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRV 874 Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524 IW AQ F+ R + L + +I V+EL ER VV+ G D LSVEAQ NAT++F L Sbjct: 875 IWKAQKLFD----RRKQSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATLLFQIL 930 Query: 525 VR 530 VR Sbjct: 931 VR 932 [156][TOP] >UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y5N4_CLAL4 Length = 1402 Score = 116 bits (290), Expect = 1e-24 Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT RNS GD++QF+YGEDG+D +E Q + + AK +K YRID + P Sbjct: 809 VHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQSVDTIPGSDAKFEKRYRIDL---LDPSK 865 Query: 183 LSAEEY----EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 +E + ++ D +++ + E Q+ +D + LRE NGD +P+NL R+I Sbjct: 866 SISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQ 925 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 NAQ F+ R + L++ E++ V+ LC +L+V+ G L+ EAQ +AT++F LVR Sbjct: 926 NAQQIFHSGRQRA--SDLKLDEIVEGVKALCSKLLVIRGKSRLAKEAQEDATLLFQCLVR 983 [157][TOP] >UniRef100_A9Q9S9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Wahlenbergiella striatula RepID=A9Q9S9_9EURO Length = 999 Score = 116 bits (290), Expect = 1e-24 Identities = 64/179 (35%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIALSDKAFEKQFRVDLMESKNLTW 834 Query: 183 LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E + ++ D V++ +E Q++ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 HDRLELASEIQGDVDVQKLFDEEYDQLEEDRKFLRFIKQAATSSDEMMPLPMNIVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T FN + + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFNIQSGAA--SDLHPSYVIPKVKQLLDRLVVVRGDDRISIEAQENATLLIKAQLR 951 [158][TOP] >UniRef100_A9Q9M5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon pusillum RepID=A9Q9M5_9EURO Length = 999 Score = 116 bits (290), Expect = 1e-24 Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L I KV++L +RLV+V G D +S+EAQ+NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQKNATLLIKALLR 951 [159][TOP] >UniRef100_A5H275 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecidea fuscoatra RepID=A5H275_9LECA Length = 1016 Score = 116 bits (290), Expect = 1e-24 Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEQKFRVDLMDPRPEASI 844 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + D V+ + +E Q++ LR+ + +E++ +P+N+ R+I Sbjct: 845 SPDYL--EQANEIAGDLEVQSFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 901 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L EVI +VREL ERLVVV G D LS+EAQ NAT++F + +R Sbjct: 902 TAKTTFKIK--NGARSNLHPAEVIPQVRELLERLVVVRGDDELSIEAQHNATLLFKAQLR 959 [160][TOP] >UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZES3_BRAFL Length = 1934 Score = 115 bits (289), Expect = 2e-24 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 + Y GTVRNS +VQ YGEDG+DAV IE Q LK +K +++D + Sbjct: 869 IAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRR 928 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + E+ + +D ++ + E Q++ D VLR V GD KV +P NLAR+IWNAQ Sbjct: 929 ILQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQ 987 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P T L +V+ VR+L +LV+V G D +S++AQ NATI+F++L+R Sbjct: 988 KIFHVNTRAP--TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQANATILFNTLLR 1042 [161][TOP] >UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347 RepID=A9QMF8_9BILA Length = 621 Score = 115 bits (289), Expect = 2e-24 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G ++Q YGEDG+D + +E Q +K A +K ++++ T + Sbjct: 82 VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQNMPTMKPTNALFEKEFKLELTDEKSLRT 141 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 L E+ E + A+++A E Q++ED R+LR ++ GD K+ +P NL RLIWNA Sbjct: 142 LYTEDVVRELQGSSDALKEA-EAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNA 199 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ + +P T L VI VREL +L++V G D +S +AQ NAT++ + L+R Sbjct: 200 QKIFHVETRKP--TDLNPIRVIEGVRELSSKLIIVSGEDRISKQAQYNATLLMNILIR 255 [162][TOP] >UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa RepID=Q2PYR6_9FUNG Length = 1013 Score = 115 bits (289), Expect = 2e-24 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMPP 176 +Y G++RNSQG +VQF+YGEDGMD IE Q L+ D+ Y++ D P Sbjct: 788 QYDGSIRNSQGHIVQFVYGEDGMDGCFIEKQKILSLRPSHKVFDRTYKVNVMDHGSIFRP 847 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 L + + + AV++ + DE A++ +D R++RE +L +G +K +PLN+ RLI A Sbjct: 848 GSLDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIA 907 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCE-RLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q FN RP + L E++ V+ L E R+ V+ G D LSVEAQ NAT++F +R Sbjct: 908 QQTFNIDVRRP--SNLNPVEIVNLVKSLTESRIPVIRGEDQLSVEAQTNATLLFQIHLR 964 [163][TOP] >UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4R4Y0_PICPG Length = 1743 Score = 115 bits (289), Expect = 2e-24 Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT RNS GD++QFLYGEDG+D ++E Q + + K Y +D + Sbjct: 851 VHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIK 910 Query: 183 LSAEEYEA-LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 EY A + D +++ + E Q+ D + LRE V NGD +P+NL R+I NAQ Sbjct: 911 PDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQ 970 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ R + L + E+I VR+LC++L V+ G + L EAQ+NAT +F LVR Sbjct: 971 QIFHL--DRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVR 1025 [164][TOP] >UniRef100_A9X991 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia caesiocinerea RepID=A9X991_9LECA Length = 989 Score = 115 bits (289), Expect = 2e-24 Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D IE Q + + A+ +K +R+D P + Sbjct: 768 KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825 Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SA+ E +T D V+ + +E Q+K LR + +E+ +P+N+ R++ +A Sbjct: 826 SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K P + L EVI +VRE+ RLVVV G D LS E Q NATI+F + +R Sbjct: 885 KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940 [165][TOP] >UniRef100_A9X990 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aspicilia cinerea RepID=A9X990_9LECA Length = 989 Score = 115 bits (289), Expect = 2e-24 Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D IE Q + + A+ +K +R+D P + Sbjct: 768 KYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDLMD--PKACI 825 Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SA+ E +T D V+ + +E Q+K LR + +E+ +P+N+ R++ +A Sbjct: 826 SADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRILESA 884 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K P + L EVI +VRE+ RLVVV G D LS E Q NATI+F + +R Sbjct: 885 KTTFKIKDGTP--SDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940 [166][TOP] >UniRef100_A9Q9N3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lachneum RepID=A9Q9N3_9EURO Length = 989 Score = 115 bits (289), Expect = 2e-24 Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPRKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYINKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R Sbjct: 895 AQTTF--KIQSGAASDLHPSHVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 951 [167][TOP] >UniRef100_A9Q9L6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium cinereum RepID=A9Q9L6_9EURO Length = 622 Score = 115 bits (289), Expect = 2e-24 Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 398 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMESKKLVW 457 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++ Sbjct: 458 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAATTSDEMMPLPMNILRILNQ 517 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R Sbjct: 518 ARTTFKIQLGSP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 574 [168][TOP] >UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis drosophilae RepID=Q6E224_9PELO Length = 633 Score = 115 bits (288), Expect = 2e-24 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM-PPD 179 V Y GTVRNS G +VQ YGEDG+D + +E Q +K + A ++ +R D T ++ Sbjct: 81 VNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDEVFMKK 140 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + S + L + + E Q++ED R+LR ++ GD K+ +P NL RL+WNAQ Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P L VI VREL ++LV+V GSD +S +AQ NAT++ + L+R Sbjct: 200 KIFKVDMRKP--VNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLR 254 [169][TOP] >UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphrocallistes vastus RepID=Q2N108_9METZ Length = 254 Score = 115 bits (288), Expect = 2e-24 Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V+Y T+RNS G +VQ YGEDG+D +EGQ L+ D+ Y T + Sbjct: 30 VKYDATIRNSNGQLVQLRYGEDGIDGAHMEGQKLNSLELGDYAFDRRYHFSYTNERQLKK 89 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 ++S + L +P + +E A++ +D +LR E+ +G+ KV +P NL+R+IWNAQ Sbjct: 90 FISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQ 148 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F K + + L +VI V ELC++LV+V G D +S EAQ NAT++ + +R Sbjct: 149 KTF--KINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEAQYNATLLINIHLR 203 [170][TOP] >UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres RepID=A9QMF2_9PELO Length = 629 Score = 115 bits (288), Expect = 2e-24 Identities = 65/178 (36%), Positives = 109/178 (61%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D + +EGQM +K A +K +++D + + Sbjct: 78 VNYDGTVRNSLAQLIQLRYGEDGLDGMWVEGQMMPTMKLTNAAFEKQFKLDLSDERSLRR 137 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + +E+ + L + A+++ + +E Q++ED R+LR ++ G+ KV +P NL RLIWNA Sbjct: 138 VYSEDVVRDLLGSSSALKE-VEEEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNA 195 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F + + T L V+ VR+L ++L++V+G D +S +AQ NAT++ + L+R Sbjct: 196 QKIFKVETRKV--TALNPLRVVQGVRDLSKKLIIVMGDDRISKQAQYNATLLVNILIR 251 [171][TOP] >UniRef100_A1YIC3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entophlyctis confervae-glomeratae RepID=A1YIC3_9FUNG Length = 1013 Score = 115 bits (288), Expect = 2e-24 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRN+ G++VQF YGEDGMD ++E Q + + K Y++D D Sbjct: 784 QYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNMGTSDQAFVKMYKVDMASDKHKFRN 843 Query: 186 SAEEYEALRTDPAVEQAMR--DEMAQIKEDLRVLREEVLTNGDEKV-NIPLNLARLIWNA 356 + E++ E R E Q++ D R LR+E+ +PLN+ R+IWNA Sbjct: 844 NVLEFKISEDLMKTEAQARFDAEFEQLEHDRRTLRQEIFAGSSTTAWPLPLNIRRMIWNA 903 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q FN +P T L V+ +V+ L ++L+VV GSD LS E Q NAT++FH L+R Sbjct: 904 QNAFNIDRTKP--TNLHPITVMNEVQNLLDKLIVVRGSDELSKEGQDNATLLFHILIR 959 [172][TOP] >UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata RepID=O02478_9ARAC Length = 194 Score = 115 bits (287), Expect = 3e-24 Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT+RNS G V+QF YGEDG+D +E Q LK +K ++ D T + Sbjct: 12 VTYDGTIRNSTGQVIQFRYGEDGLDGCCVEFQNLPTLKPSNKAFEKRFKFDATNERYLRR 71 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + E+ E + + A+ + R E ++KED ++LR V T GD KV +P NL+R+IWNA Sbjct: 72 IFTEDVVRELMGSSTALSELER-EWERLKEDRKMLR-LVFTTGDSKVVMPCNLSRMIWNA 129 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F+ P + L +VI V +L ++L++V G D LS++A NAT++F SL+R Sbjct: 130 QKIFHVNLRSP--SDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQANDNATLLFRSLLR 185 [173][TOP] >UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus RepID=C3U0C3_9EURO Length = 618 Score = 115 bits (287), Expect = 3e-24 Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVRNS GDVVQF+YGEDG+D I+ Q + ++ K K +R+D M P+W Sbjct: 397 VKYDGTVRNSLGDVVQFVYGEDGLDGAHIKNQRVDVIRCSNDKFKKRFRVDL---MDPEW 453 Query: 183 LSA----EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 E+ ++ D V++ + +E Q+ +D LR V +E + +P+N+ R++ Sbjct: 454 TLGPEVLEQANEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILE 512 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +A+T F + + L EVI +VR L +RLV+V G+D +S EAQ NAT++F + +R Sbjct: 513 SAKTTFRIR--EGTISDLHPAEVIPQVRALLDRLVIVRGNDDISREAQENATLLFKAHLR 570 [174][TOP] >UniRef100_A9Q9T3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria viridula RepID=A9Q9T3_9EURO Length = 999 Score = 115 bits (287), Expect = 3e-24 Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K +R+D W Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+++ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMDVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L ERL++V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLERLIIVRGDDPISLEAQNNATLLIKALLR 951 [175][TOP] >UniRef100_A9Q9M3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon petrolepideum RepID=A9Q9M3_9EURO Length = 964 Score = 115 bits (287), Expect = 3e-24 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 766 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 825 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 826 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 885 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 886 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 942 [176][TOP] >UniRef100_A9Q9M2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon adscendens RepID=A9Q9M2_9EURO Length = 999 Score = 115 bits (287), Expect = 3e-24 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951 [177][TOP] >UniRef100_A9Q9M1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon miniatum RepID=A9Q9M1_9EURO Length = 999 Score = 115 bits (287), Expect = 3e-24 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL+VV G D +S+EAQ +AT++ + +R Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQEDATLLIKAQLR 951 [178][TOP] >UniRef100_A9Q9M0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dermatocarpon luridum RepID=A9Q9M0_9EURO Length = 999 Score = 115 bits (287), Expect = 3e-24 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ DE Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLTEDRKFLRYVKQAATSADEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL+VV G D +S+EAQ N T++ + +R Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENPTLLIKAQLR 951 [179][TOP] >UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus RepID=A1YIC4_9FUNG Length = 1003 Score = 115 bits (287), Expect = 3e-24 Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 2/177 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS G +VQF YGEDGMD ++E Q F+ + + +K YR+D D Sbjct: 776 QYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFEKKYRVDIA-DPRYKLT 834 Query: 186 SAEEYEA--LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 S ++ A L DP + + E + E R+LRE+V +GD + +P+NL RLI NA Sbjct: 835 SLDQKIAGDLLNDPGSQSLLDGEFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANAT 894 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P L VI V+ L ++LVVV G D LS+ AQ+NAT++F L++ Sbjct: 895 RSFHIDRRKP--VDLNPTVVIQGVQMLLDKLVVVRGYDTLSILAQQNATLLFQILLK 949 [180][TOP] >UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010 RepID=Q6E232_9PELO Length = 601 Score = 114 bits (286), Expect = 3e-24 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T D + Sbjct: 65 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDRFLEN 124 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 E+ E + A+E+ + E AQ+ ED R+LR ++ GD K+ +P NL RL+WNA Sbjct: 125 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 182 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F +P L VI VREL ++L++V G+D +S +AQ NAT++ + L+R Sbjct: 183 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 238 [181][TOP] >UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata RepID=P91819_ZELPU Length = 629 Score = 114 bits (286), Expect = 3e-24 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176 V Y GTVRNS G +VQ YGEDG+D + +E Q +K + + +K +++D T RD+ Sbjct: 75 VNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFEKQFKLDLTDERDLRR 134 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + + E L + A+ + + E Q++ED R+LR ++ GD KV++P NL RLIWNA Sbjct: 135 IYXDSVVRELLGSADALRE-VESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNA 192 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P L V+ VREL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 193 HKIFHVDLKKP--VDLNPLRVVEGVRELNKKLVIVSGEDRISKQAQYNATLLMNILLR 248 [182][TOP] >UniRef100_A9Q9R7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria hydrela RepID=A9Q9R7_9EURO Length = 999 Score = 114 bits (286), Expect = 3e-24 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDHAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFKIQSGCP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKAQLR 951 [183][TOP] >UniRef100_A9Q9M8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocatapyrenium rhizinosum RepID=A9Q9M8_9EURO Length = 999 Score = 114 bits (286), Expect = 3e-24 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + A +K + +D W Sbjct: 775 VKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKLFHVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951 [184][TOP] >UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=O01364_9BILA Length = 633 Score = 114 bits (285), Expect = 4e-24 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D + Sbjct: 78 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 137 Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 E + +R +A+R+ E AQ++ED R+LR ++ GD K+ +P NL RL+WN Sbjct: 138 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 194 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ + +P T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 195 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 251 [185][TOP] >UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf. armata SB363 RepID=A9UEE2_9BILA Length = 475 Score = 114 bits (285), Expect = 4e-24 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G ++Q YGEDG+D + +E Q +K +K +++D + Sbjct: 72 VNYDGTVRNSLGQMIQLRYGEDGLDGMWVENQHMPTMKPTNIVFEKEFKLDVADEKSLRK 131 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 L E+ L+ + E AQ++ED R+LR ++ GD K+ +P NL RLIWNAQ Sbjct: 132 LYTEDVVRELQGSTEALKESEGEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 190 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI +REL +LV+V G D +S +AQ NAT++ + L+R Sbjct: 191 KIFHVETRKP--TDLNPLRVIEGIRELSTKLVIVSGEDRISQQAQYNATLLMNILIR 245 [186][TOP] >UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=A9QMQ5_9BILA Length = 276 Score = 114 bits (285), Expect = 4e-24 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D + Sbjct: 71 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAVFEKEFKLDLADEKTLRR 130 Query: 183 LSAEEYEALRTDPAVEQAMRD---EMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 E + +R +A+R+ E AQ++ED R+LR ++ GD K+ +P NL RL+WN Sbjct: 131 FYTE--DVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWN 187 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ F+ + +P T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 188 AQKIFHVEMRKP--TDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQYNATLLMNILLR 244 [187][TOP] >UniRef100_A9Q9P1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii RepID=A9Q9P1_9EURO Length = 999 Score = 114 bits (285), Expect = 4e-24 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G+VVQF+YGEDG+D IE Q + + A +K +R+D W Sbjct: 775 VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR + + DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI KVR+L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [188][TOP] >UniRef100_A9Q9P0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placopyrenium bucekii RepID=A9Q9P0_9EURO Length = 989 Score = 114 bits (285), Expect = 4e-24 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G+VVQF+YGEDG+D IE Q + + A +K +R+D W Sbjct: 775 VKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDAAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR + + DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSINQAANSADEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI KVR+L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQAGAASDLHPSYVIPKVRQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [189][TOP] >UniRef100_A9Q9N0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis cinerascens RepID=A9Q9N0_9EURO Length = 999 Score = 114 bits (285), Expect = 4e-24 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAFEKQFRVDLMEPTKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ E Q+ ED R LR ++ T DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDVEYEQLVEDRRFLRYIKQAATTSDEMMPLPMNILRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLVVVRGEDRISLEAQENATLLLKAQLR 951 [190][TOP] >UniRef100_A9Q9M7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Heteroplacidium imbricatum RepID=A9Q9M7_9EURO Length = 999 Score = 114 bits (285), Expect = 4e-24 Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIRKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL++V G D +S+EAQ NAT++ +R Sbjct: 895 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQENATLLIKGQLR 951 [191][TOP] >UniRef100_A7J5B0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Flavoparmelia caperata RepID=A7J5B0_9LECA Length = 1008 Score = 114 bits (285), Expect = 4e-24 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P + Sbjct: 777 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDVILCSTKQFERKFRVDLMDSQPETSI 836 Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 S E E D ++ + DE Q+++D RV ++ + E + +PLN+ R++ A Sbjct: 837 SPEFLEQANEMIGDVETQKHLDDEYRQLEKD-RVELRKIRQDDTENLQLPLNVLRILETA 895 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K + L EVI +V+EL +RLVVV G+D LS EAQ NAT++F +R Sbjct: 896 KTTFKIK--TGARSNLHPAEVIPQVQELLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 951 [192][TOP] >UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q30BD8_CYAPA Length = 1000 Score = 114 bits (284), Expect = 6e-24 Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y T RNS G+++QFLYGEDGM IEGQ E L+ D +++K ++++ R+ Sbjct: 770 VQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMNLDDRNFGEG 829 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +L + +R + + E Q+ +D LR E++ +G+ V++P+NL RLIWNAQ Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 + +P + L+ ++ V L +LVV+ G D LS EAQ NAT +F+ +R Sbjct: 890 KIYKVDTSKP--SDLRPDIILQGVELLSTQLVVIAGEDTLSREAQENATRLFNIHLR 944 [193][TOP] >UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=O00820_ACACA Length = 1569 Score = 114 bits (284), Expect = 6e-24 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TTRDMPPD 179 V+Y TVRNS GDV+QFLYGEDGMD +E Q + LK + Y+ D + Sbjct: 779 VKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGVVLKYQHDYDSPSWGEG 838 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 W+ +A+ P ++ + E QI D R+LRE++ GD++ +P+NL R+I NAQ Sbjct: 839 WIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQ 898 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P + + L +++ + L ERLVV+ G D +S EAQ NA ++F L+R Sbjct: 899 KIFHLGPKKV--SDLDPCQIVEDLGNLIERLVVIPGQDDISKEAQANAILLFSILLR 953 [194][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 114 bits (284), Expect = 6e-24 Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRN+ ++Q YGEDG+D IE Q LK + +R D + Sbjct: 861 VHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEKRLKQ 920 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 +L ++ TD V++ ++ E Q+ +D +R +L NGD +V +P+NL RLIWNAQ Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P + + L +VI V EL +LV+V G D +S +AQ NAT++F+ L+R Sbjct: 980 KIFHVDPRKS--SDLHPMKVIDDVCELSRKLVIVHGEDRISKQAQENATLLFNILLR 1034 [195][TOP] >UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica RepID=A9QMT2_9PELO Length = 488 Score = 114 bits (284), Expect = 6e-24 Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + + Sbjct: 64 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 123 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + + + L+ + + E AQ++ED R+LR ++ G+ K+ +P NL RLIWNAQ Sbjct: 124 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 182 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R Sbjct: 183 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 237 [196][TOP] >UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi RepID=A9QMG7_9BILA Length = 583 Score = 114 bits (284), Expect = 6e-24 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D +EGQ +K A +K +++D + + Sbjct: 65 VNYDGTVRNSLAQMIQLRYGEDGLDGTWVEGQFMPTMKLTNAAFEKQFKLDLSDEKALRR 124 Query: 183 LSAEEY--EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 +E+ L + A+++ + +E Q++ED R+LR ++ GD KV +P NL RLIWNA Sbjct: 125 GYSEDIVRNLLGSSTALKE-VEEEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNA 182 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F + +P + L VI VRE+ ++L++V G D +S AQ NAT++ + LVR Sbjct: 183 QKIFKVETRKP--SSLNPLRVIEGVREMSKKLIIVCGDDRISKHAQYNATLLMNILVR 238 [197][TOP] >UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica RepID=A9QME0_9PELO Length = 633 Score = 114 bits (284), Expect = 6e-24 Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + + Sbjct: 78 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNLPTMKPTNALFEKEFKLDLSDEKTLTK 137 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + + + L+ + + E AQ++ED R+LR ++ G+ K+ +P NL RLIWNAQ Sbjct: 138 YYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQ 196 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL E+LV+V G D +S +AQ NAT++ + L+R Sbjct: 197 KIFHVETRKP--TDLNPLRVIEGVRELSEKLVIVSGDDRISKQAQYNATLLMNILIR 251 [198][TOP] >UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U9K8_PHANO Length = 1720 Score = 114 bits (284), Expect = 6e-24 Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 5/181 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPD- 179 V+Y GTVRNS GD+++F+YGEDG+D IE Q + + AK +K +++D P Sbjct: 868 VKYDGTVRNSLGDIIEFIYGEDGLDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQI 927 Query: 180 ----WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLI 347 A E++ D +++ + +E QIK D LR + + ++ +PLN+AR+I Sbjct: 928 PTSKLAGANEFQG---DVDIQRHLDEEFDQIKIDREYLRTVIGQDDSQQFQLPLNIARMI 984 Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 +AQ +F K + + L EV+ +VR+L + LVV+ G+D LSVEAQ +AT +F + Sbjct: 985 ESAQMRFGIKKGQ-NVSDLHPTEVVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHL 1043 Query: 528 R 530 R Sbjct: 1044 R 1044 [199][TOP] >UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus RepID=C3U0B2_9EURO Length = 993 Score = 114 bits (284), Expect = 6e-24 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GDVVQFLYGEDG+D IE Q + +K K + +R+ D R + Sbjct: 772 VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDIIKCSDEKFYERFRVDLMDPERSLG 831 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P+ L E+ + D V++ + +E Q+++D LR V +E + +P+N+ R++ + Sbjct: 832 PEVL--EQATEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLPINVQRILES 888 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + + L EVI +V+ L +RLVVV G+D +S EAQ NAT++F + +R Sbjct: 889 AKTTFRIRD--GNISDLHPSEVIPQVQALLDRLVVVRGNDEISREAQDNATLLFKAQLR 945 [200][TOP] >UniRef100_A9Q9R1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria dolosa RepID=A9Q9R1_9EURO Length = 999 Score = 114 bits (284), Expect = 6e-24 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + ++ +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFERQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ DE Q+ ED R LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDDEYEQLVEDRRFLRYIKKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [201][TOP] >UniRef100_A9Q9M4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endocarpon psorodeum RepID=A9Q9M4_9EURO Length = 999 Score = 114 bits (284), Expect = 6e-24 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQALEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L I KV++L +RLV+V G D +S+EAQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGSP--SDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLLIKALLR 951 [202][TOP] >UniRef100_A7J5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gyalideopsis vulgaris RepID=A7J5B2_9LECA Length = 1015 Score = 114 bits (284), Expect = 6e-24 Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 6/181 (3%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D IE Q + + K + +R++ D P + Sbjct: 784 KYDGTVRNSLGDIVQFIYGEDGLDGSFIEAQKVDIIACSDQKFQRMFRVNLLDDDPETSI 843 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQI---KEDLRVLREEVLTNGDEKVNIPLNLARLI 347 S E E ALR D ++ + +E Q+ +E LR+ R++ G+E++ +P+N+ R++ Sbjct: 844 SPEFLESATALRGDLQAQEHLEEEYKQLLAARESLRINRQD----GNEQLQLPINVIRIL 899 Query: 348 WNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLV 527 A+T F K + L EVI +V +L +RLVV+ G D LS E Q NAT++F + + Sbjct: 900 DTAKTTFKIKD--GARSNLHPAEVIPQVNQLLDRLVVIRGDDILSKEGQHNATLLFKAQL 957 Query: 528 R 530 R Sbjct: 958 R 958 [203][TOP] >UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified nematode RepID=O01376_9BILA Length = 633 Score = 113 bits (283), Expect = 8e-24 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 2/178 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTT--RDMPP 176 V Y GTVRNS +VQ YGEDG+D + +E Q +K + A ++ +R D T R + Sbjct: 78 VNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDHRFLEN 137 Query: 177 DWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 + E + A+E+ + E AQ+ ED R+LR ++ GD K+ +P NL RL+WNA Sbjct: 138 SYTEDVIRELQESSEAIEK-IESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNA 195 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 Q F +P L VI VREL ++L++V G+D +S +AQ NAT++ + L+R Sbjct: 196 QKIFKVDTRKP--VNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLR 251 [204][TOP] >UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QME1_9BILA Length = 628 Score = 113 bits (283), Expect = 8e-24 Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + + Sbjct: 75 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 134 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + + + L+ + + E Q++ED R+LR ++ NG+ K+ +P NL RL+WNAQ Sbjct: 135 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 193 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL ++L++V G D +S +AQ NAT++ + LVR Sbjct: 194 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGEDRISKQAQYNATLLMNILVR 248 [205][TOP] >UniRef100_Q0PQ14 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladonia caroliniana RepID=Q0PQ14_9LECA Length = 1016 Score = 113 bits (283), Expect = 8e-24 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GTVRNS GD+VQF+YGEDG+DAV IE Q + + + +K +++D P Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCSDKQFEKKFKVDLMDPKPDTSI 844 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + D +Q + DE ++ LR + +E++ +PLN+ R++ Sbjct: 845 SPDFL--EQANEMIGDLETQQYLDDEYNKLLAAREFLR-STRADDNEQLQLPLNVIRILD 901 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + LQ EV+TKV EL ++LV+V G D LS E Q NAT++F + +R Sbjct: 902 TAKTTFKIK--NGARSNLQPVEVVTKVNELLDKLVIVRGDDELSREGQHNATLLFKAQLR 959 [206][TOP] >UniRef100_A9Q9N2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria chiloensis RepID=A9Q9N2_9EURO Length = 999 Score = 113 bits (283), Expect = 8e-24 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIISMSNDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR + T+ DE + +P+N+ R++ Sbjct: 835 HDRLEQAPEIHGDIDVQKLFDEEYEQLVEDRKFLRFINKAATSSDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQT F +P + L VI KV++L ERLV+V G D +S EAQ NAT++ + +R Sbjct: 895 AQTTFKIQPGAA--SDLHPSYVIPKVKQLLERLVIVRGEDKISREAQDNATLLIKAQLR 951 [207][TOP] >UniRef100_A9Q9L7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catapyrenium daedaleum RepID=A9Q9L7_9EURO Length = 999 Score = 113 bits (283), Expect = 8e-24 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRYIKKAATTADEMMPLPMNILRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLVVV G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFKIQLGCP--SDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQENATLLIKAQLR 951 [208][TOP] >UniRef100_A5H2E9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia dialyta RepID=A5H2E9_9LECA Length = 994 Score = 113 bits (283), Expect = 8e-24 Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D IE Q + + ++ +R+D + P + Sbjct: 777 KYDGTVRNSLGDIVQFIYGEDGLDGTAIEQQRLDIILCSNRDFERNFRVDLMENDPDTSI 836 Query: 186 SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGD---EKVNIPLNLARLIWNA 356 SAE + T+ A +++ + Q E L+ R + N E++ +PLN+AR+I A Sbjct: 837 SAEILDQ-ATEIAGNVEVQEHLDQEYEQLKAARTFLRKNKQDDIEQLQLPLNVARIIDTA 895 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F+ K G + L EVI +V +L +RL+VV GSD LS+E+Q NAT++F + +R Sbjct: 896 RTTFHIK--SGGRSNLHPAEVIPQVNDLLDRLIVVRGSDPLSLESQHNATLLFKAQLR 951 [209][TOP] >UniRef100_A5H288 DNA-directed RNA polymerase (Fragment) n=1 Tax=Buellia stillingiana RepID=A5H288_9LECA Length = 1002 Score = 113 bits (283), Expect = 8e-24 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D IE Q + + A + +R+D + P + Sbjct: 785 KYDGTVRNSLGDIVQFIYGEDGLDGAAIEPQRVDIIICSDAHFEHMFRVDVMENDPKTSI 844 Query: 186 SA---EEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SA E+ + + V+Q + E Q+K LR + + +E++ +PLN+ R++ A Sbjct: 845 SADILEQATEIAGNVEVQQHLDQEWEQLKAAREFLR-KTRQDDNEQLQLPLNVVRILDTA 903 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T FN K + + L EVIT+V+EL L+VV G D LS+E+Q NAT++F + +R Sbjct: 904 RTTFNIK--QGSRSDLHPVEVITEVKELLGELIVVRGDDPLSLESQHNATLLFKAQLR 959 [210][TOP] >UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii RepID=A1YIA7_ISSOR Length = 1647 Score = 113 bits (283), Expect = 8e-24 Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GT RNS GDV+QF+YGEDG+DA +E Q + + A +K YR+D + Sbjct: 773 VHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFEKKYRVDLMDEKKSIR 832 Query: 183 LSAEEY-EALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 EY + D +++ + +E Q+ +D LR V +G+ +P+N+ R++ NAQ Sbjct: 833 PDVVEYGSEILGDIKLQKILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQ 892 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ ++ + L ++E++ V+ELC++ VV G G EA+ N+T++F L+R Sbjct: 893 QIFHVDRYKA--SDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARENSTLLFQCLIR 947 [211][TOP] >UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei RepID=Q6E228_9BILA Length = 621 Score = 113 bits (282), Expect = 1e-23 Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D T + Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKPTNAMFEKEFKLDLTDEKTLRK 141 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + + E L+ + + E Q++ED R+LR ++ GD K+ +P NL RLIWNAQ Sbjct: 142 FYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 200 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI ++EL +L++V G D +S +AQ NAT++ + L+R Sbjct: 201 KIFHVETRKP--TDLNPLRVIDGIKELSSKLIIVSGEDRISQQAQYNATLLMNILIR 255 [212][TOP] >UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus regenfussi RepID=A9QMG9_9BILA Length = 620 Score = 113 bits (282), Expect = 1e-23 Identities = 67/176 (38%), Positives = 100/176 (56%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS +VQ YGEDG+D + +E Q +K A ++ +++D + Sbjct: 75 VNYDGTVRNSMAQMVQLRYGEDGLDGMWVENQTMPSMKPSNALFEREFKLDLGDERMLRK 134 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 + +E P + + E AQ++ED R+LR ++ GD KV +P NL RLIWNAQ Sbjct: 135 IYTDEVVRELQTPEALKEVESEWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQK 193 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + + T L VI VREL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 194 VFHVETRKQ--TELNPLRVIEGVRELSKKLVIVGGDDRISKQAQFNATLLMNILLR 247 [213][TOP] >UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura RepID=A9QMG2_9BILA Length = 273 Score = 113 bits (282), Expect = 1e-23 Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G +VQ YGEDG+D + +E Q +K A ++ +++D T + Sbjct: 68 VNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQSMPSMKPSNALFERDFKLDLTDEKTLKK 127 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 E+ L+ P + + +E AQ++ED R+LR ++ + G+ K +P NL RLIWNAQ Sbjct: 128 CYTEDLIRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQ 186 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + P L VI VR L E+L++V G D +S +AQ NAT++ + L+R Sbjct: 187 KIFHVEKREP--VCLNPLNVIRGVRSLSEKLIIVGGEDRISKQAQYNATLLMNILLR 241 [214][TOP] >UniRef100_Q0PPZ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lichinella iodopulchra RepID=Q0PPZ6_9PEZI Length = 1020 Score = 113 bits (282), Expect = 1e-23 Identities = 65/178 (36%), Positives = 107/178 (60%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD++QF+YGEDG+D V++E Q + + ++ + +RID P + Sbjct: 791 KYDGTVRNSLGDIIQFVYGEDGLDGVQVEEQRVDIIACSDSQFEDKFRIDLMDSNP--GI 848 Query: 186 SAEEYE---ALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 SAE E + D V+ + +E Q+K D LR + T+ +EK+++P N+ R+I A Sbjct: 849 SAEVLEQASEIIGDIKVQHYLDEEWEQLKADREFLRSQ-STDDNEKMHLPFNVIRIIETA 907 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 ++ F K + G + L +VI V++L RL+++ G D LS+E+Q NAT++F +R Sbjct: 908 KSTFKLKDN--GRSDLHPVDVIPAVKDLLSRLIIIRGDDPLSIESQENATLLFKIQLR 963 [215][TOP] >UniRef100_A9Q9U1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verruculopsis poeltiana RepID=A9Q9U1_9EURO Length = 988 Score = 113 bits (282), Expect = 1e-23 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 823 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYDQLVEDRQFLRSIKKAATSADEMMPLPMNVVRILDQ 883 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 884 ARTTFAIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940 [216][TOP] >UniRef100_A9Q9P7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Staurothele fissa RepID=A9Q9P7_9EURO Length = 999 Score = 113 bits (282), Expect = 1e-23 Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 ++ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++ Sbjct: 835 QDRLDQASEIHGDVDVQKMFDEEYEQLVEDRRFLRRIKKAATTSDEMMPLPMNIVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQSGATSDLHASYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [217][TOP] >UniRef100_A5H295 DNA-directed RNA polymerase (Fragment) n=1 Tax=Protopannaria pezizoides RepID=A5H295_9LECA Length = 1016 Score = 113 bits (282), Expect = 1e-23 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ YR+D P + Sbjct: 785 KYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFERKYRVDVMDPRPEATI 844 Query: 186 SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 S E E L D V+ +E Q++ LR+ + D+ + +P+N+ R++ A Sbjct: 845 SPEFLEQAHDLTGDSEVQAHFDEEYEQLQAARDFLRKNKQDDNDQ-LQLPINVIRILDTA 903 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K + L EVI +VR+L ERL+VV G D LS EAQ NAT++F + +R Sbjct: 904 KTTFKIKDGTR--SNLHPTEVIPQVRDLLERLIVVRGDDDLSREAQHNATMLFKAQLR 959 [218][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 112 bits (281), Expect = 1e-23 Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 4/180 (2%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT----TRDM 170 V Y GT+RNS ++Q YGEDGM RIEGQ +K A ++ + D T Sbjct: 871 VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNGTAMR 930 Query: 171 PPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 + L+ + + +D A+ +E Q+K+D +LR + NG++KVN+P+ L+RLIW Sbjct: 931 LKNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIW 989 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 N+Q F K + T L +VI +++L +RL+VV G D LS EAQ NAT++F +R Sbjct: 990 NSQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1047 [219][TOP] >UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp. SB341 RepID=Q6E225_9PELO Length = 622 Score = 112 bits (281), Expect = 1e-23 Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +R+D + Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKPTNAVFEKDFRLDLADERTLKS 141 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 E L+ P + + E Q++ED R+LR ++ GD KV +P NL RLIWNAQ Sbjct: 142 CYEEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQ 200 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F +P T L VI VRE+ ++L++V GSD +S +AQ NAT++ + L+R Sbjct: 201 KIFKVDLRKP--TNLSPLHVIEGVREVSKKLIIVSGSDDISKQAQYNATLLMNILLR 255 [220][TOP] >UniRef100_Q5EM00 RNA polymerase II largest subunit (Fragment) n=1 Tax=Grifola sordulenta RepID=Q5EM00_9AGAR Length = 259 Score = 112 bits (281), Expect = 1e-23 Identities = 74/179 (41%), Positives = 98/179 (54%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS GD++QF+YGEDGMD IE Q E + A+ + YR+D T D + Sbjct: 35 VCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFALNNAQFEHDYRVDVT-DPSGGF 93 Query: 183 LSAEEYEALRTDPAVEQAMRD-EMAQIKEDLRVLREEVL--TNGDEKVNIPLNLARLIWN 353 L L QA D E AQ+ ED R+LRE + T+ +P+NL R++ N Sbjct: 94 LPGVLQVGLDDSSVELQAKLDEEFAQLSEDRRLLREFIFPRTDPSSPRYLPVNLQRIVQN 153 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A F+ +P + L+ +I VRELC RLVVV G LS E Q NAT++F +R Sbjct: 154 AMQIFHIDRRKP--SDLEPGYIIDSVRELCSRLVVVRGESPLSQEGQENATLLFRMHIR 210 [221][TOP] >UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis RepID=Q2PYS8_9FUNG Length = 809 Score = 112 bits (281), Expect = 1e-23 Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDM---P 173 ++Y GTVRN+ G+++QF YGEDGMDAV+IE Q + ++ + K + Y++D M Sbjct: 586 IKYDGTVRNALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVDFLNPMYGIS 645 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 + L E E + P + A+ E Q+ ED VLR E+ +GD +PLN+ R+IWN Sbjct: 646 ENVLQKEIIEEILATPVMLIALDKEYRQLTEDRNVLR-EIFKSGDSSWPLPLNIKRMIWN 704 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQ+ F +P + L ++ V++ C++L D LS E RNAT++F L+R Sbjct: 705 AQSLFKIDFRKP--SDLHPIKIYKDVKDFCDKLNKNSEKDSLS-EQDRNATMLFQILIR 760 [222][TOP] >UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YI77_NECH7 Length = 1750 Score = 112 bits (281), Expect = 1e-23 Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 RY GTVRNS GDVVQFLYGEDG+DA+ IE Q L A YR+D PP+W Sbjct: 863 RYDGTVRNSLGDVVQFLYGEDGLDAMCIEKQKLGILNMSNAAFKAKYRLDLAN--PPEWF 920 Query: 186 SAE-EYEALRTDPAVEQAMRD-EMAQIKEDLRVLRE-EVLTNGDEKVNIPLNLARLIWNA 356 ++ E+ T A+ D E + +D RV+R+ +E + +PLN+ R+I +A Sbjct: 921 KSDYEFGNELTGDRPSMALLDTEWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESA 980 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 + FN K + + L+ +VI V+ L + + +V G+D +SVEA NATI+F L+R Sbjct: 981 KRVFNVKAN--DRSNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADANATILFKGLLR 1036 [223][TOP] >UniRef100_A9Q9R9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria lecideoides RepID=A9Q9R9_9EURO Length = 977 Score = 112 bits (281), Expect = 1e-23 Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 764 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSNEAFEKQFRVDLMEPKKLVW 823 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ +D + LR ++ T+ DE + +P+N+ R++ Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYDQLVDDRQFLRSIKKAATSADEMMPLPMNVVRILNQ 883 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 884 ARTTFKIQSGAP--SDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 940 [224][TOP] >UniRef100_A9Q9N8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium sp. AFTOL 2237 RepID=A9Q9N8_9EURO Length = 978 Score = 112 bits (281), Expect = 1e-23 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 766 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 825 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR + T+ DE + +P+N+ R++ Sbjct: 826 HDRLEQASEIHGDVDVQKLFDEEYEQLVEDRSFLRYINKAATSSDEMMPLPMNVVRILNQ 885 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R Sbjct: 886 AQTTF--KIQSGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 942 [225][TOP] >UniRef100_A9Q9N6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium arboreum RepID=A9Q9N6_9EURO Length = 989 Score = 112 bits (281), Expect = 1e-23 Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR + T+ DE + +P+N+ R++ Sbjct: 835 HDRLEQASEIHGDIDVQKLFDEEYEQLAEDRRFLRYINKAATSSDEMMMLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQT F K + L VI KV++L RLV+V G+D +S+EAQ NAT++ + +R Sbjct: 895 AQTTF--KIQSGATSDLHPSYVIPKVKQLLGRLVIVRGNDKISLEAQDNATLLIKAQLR 951 [226][TOP] >UniRef100_A5H297 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoria polycarpa RepID=A5H297_9LECA Length = 1020 Score = 112 bits (281), Expect = 1e-23 Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GDVVQFLYGEDG+DAV IE Q + +K + ++ R+D P + Sbjct: 791 KYDGTVRNSLGDVVQFLYGEDGLDAVHIESQPVDIVKCSNGQFERKCRVDLMDPRPETSI 850 Query: 186 SAEEYEA---LRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 +E E + D V+ + +E Q+++ LRE D+ +PLN+ R++ NA Sbjct: 851 PSELLECSKEIAGDLDVQGHLDEEYEQLQKAREFLRE---GKTDDSAYLPLNIIRILENA 907 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 + F K + L EVI +V EL +RLV+V G D LS EAQ NAT++F + +R Sbjct: 908 KAAF--KIRNNARSNLHPAEVIPQVNELLDRLVIVRGDDPLSQEAQHNATLLFKAQLR 963 [227][TOP] >UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q3C6_ANOGA Length = 1878 Score = 112 bits (280), Expect = 2e-23 Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G ++Q YGEDG+ +E Q +K +K YR D T + Sbjct: 863 VNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERTLRR 922 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + E+ + L +V Q + E Q+ D LR ++ NGD KV +P NL R+IWN Q Sbjct: 923 IFNEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQ 981 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ P T L +VI VR+L +R V+V G+D LS +A NAT++F LVR Sbjct: 982 KIFHINKRSP--TDLSPLKVIQGVRDLLQRCVIVAGTDRLSKQANENATLLFQCLVR 1036 [228][TOP] >UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA Length = 1943 Score = 112 bits (280), Expect = 2e-23 Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V Y GTVRNS G +VQ YGEDG+D + +E Q +K A +K +++D + + Sbjct: 938 VNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKEFKLDLSDEKSLRK 997 Query: 183 LSAEE-YEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 L E L+ + + E Q++ED R+LR ++ GD K+ +P NL R+IWNAQ Sbjct: 998 LYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQ 1056 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F + +P T L VI V+EL ++LV+V G D +S +AQ NAT++ + L+R Sbjct: 1057 KIFRVELRKP--TDLNPLRVIEGVKELSKKLVIVSGEDRISKQAQYNATLLMNILLR 1111 [229][TOP] >UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480 RepID=C5FCL2_NANOT Length = 1748 Score = 112 bits (280), Expect = 2e-23 Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GD+VQFLYGEDG+D IE Q + +K + +R+ D R + Sbjct: 872 VKYDGTVRNSLGDIVQFLYGEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLS 931 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 PD L E+ + D V++ + +E Q+ +D LR V+ DE + +P+N+ R++ + Sbjct: 932 PDIL--EQATEIAGDIEVQKHLDEEWEQLLKDRAFLR-TVVKEDDEMMQLPINIQRILES 988 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + + L EV+ +VR+L +RL+VV G D LS EAQ NAT++F + +R Sbjct: 989 AKTTFRIRDGT--ISDLHPAEVVPQVRQLLDRLLVVRGDDPLSREAQENATLLFKAQLR 1045 [230][TOP] >UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H9U6_PENCW Length = 1733 Score = 112 bits (280), Expect = 2e-23 Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDT---TRDMP 173 V+Y GTVRNS GD++QF+YGEDG+D IE Q +++K AKL + +R+D R + Sbjct: 866 VKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVDHIKCSDAKLLERFRVDVMDPERTLG 925 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P+ L E+ + D V++ +E I +D LR V+ +E + +P+N+ R++ Sbjct: 926 PEIL--EQANEIAGDIEVQRYFDEEWEAILKDREFLR-TVVKEDEEMMQLPINVQRILEM 982 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + + L EVI +V++L +RLV+V G+D +S EAQ NAT++F + +R Sbjct: 983 ARTTFRIR--EGTISDLHPAEVIPQVQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLR 1039 [231][TOP] >UniRef100_A9X969 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porpidia speirea RepID=A9X969_9LECA Length = 615 Score = 112 bits (280), Expect = 2e-23 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + +K +R+D P Sbjct: 392 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQKLDIITCSHEQFEKKFRVDLMDPRPEASI 451 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + + V+ + +E Q++ LR+ + +E++ +P+N+ R+I Sbjct: 452 SPDYL--EQANEIAGNLKVQTFLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIID 508 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L EVI +VR+L ERLVVV G D LS EAQ NAT++F + +R Sbjct: 509 TAKTTFKIK--NGARSNLHPAEVIPQVRDLLERLVVVRGDDELSKEAQHNATLLFKAQLR 566 [232][TOP] >UniRef100_A9Q9P5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria diffractella RepID=A9Q9P5_9EURO Length = 999 Score = 112 bits (280), Expect = 2e-23 Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLPMNVQRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L RLV+V G D +S+ AQ NAT++ +L+R Sbjct: 895 ARTTFKIQSGAP--SDLHPTYVIPKVQQLLGRLVIVRGDDPISLGAQNNATLLIKALLR 951 [233][TOP] >UniRef100_A9Q9N4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium lacinulatum RepID=A9Q9N4_9EURO Length = 989 Score = 112 bits (280), Expect = 2e-23 Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D M P Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFEKQFRVDL---MEPKK 831 Query: 183 L----SAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARL 344 L E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R+ Sbjct: 832 LVRHDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAATSADEMMPLPMNVVRI 891 Query: 345 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 524 + A+T F + P + L VI KV++L ERL +V G D +S+EAQ NAT++ + Sbjct: 892 LNQARTTFKIQSGGP--SDLHPSYVIPKVKQLLERLTIVRGDDSISLEAQENATLLIKAQ 949 Query: 525 VR 530 +R Sbjct: 950 LR 951 [234][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 112 bits (279), Expect = 2e-23 Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD---MP 173 V Y GT+RNS ++Q YGEDGM RIEGQ +K A ++ + D + Sbjct: 871 VAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIYMNAFLRL 930 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 + L+ + + +D A+ +E Q+K+D +LR + NG++KVN+P+ L+RLIWN Sbjct: 931 KNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLR-NIFPNGNKKVNLPVKLSRLIWN 989 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +Q F K + T L +VI +++L +RL+VV G D LS EAQ NAT++F +R Sbjct: 990 SQKMF--KVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLR 1046 [235][TOP] >UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii RepID=C3U0B8_9EURO Length = 618 Score = 112 bits (279), Expect = 2e-23 Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GD+VQFLYGEDG+D IE Q + ++ + K YRI D + Sbjct: 397 VKYDGTVRNSLGDIVQFLYGEDGLDGQHIENQRVDVIRCSDEQFRKRYRIDLMDPESTLS 456 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 PD L E+ + D V++ + +E Q+ D + LR V +EK+ +P+N+ R++ + Sbjct: 457 PDIL--EQAGEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLPINVQRILES 513 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + + L EVI +V+ L +RL+VV G D +S EAQ NAT++F + +R Sbjct: 514 AKTAFRIRDGT--ISDLHPAEVIPQVQALLDRLLVVRGDDPISKEAQDNATLLFKAQLR 570 [236][TOP] >UniRef100_C3U0B7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eremascus albus RepID=C3U0B7_9EURO Length = 994 Score = 112 bits (279), Expect = 2e-23 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GDVVQFLYGEDG+D IE Q + +K AK YR+ D R + Sbjct: 773 VKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDVIKCSDAKFRDRYRVDLMDPERTIS 832 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 PD L E+ + D V++ + +E Q+++D LR +E + +P+N+ R++ + Sbjct: 833 PDLL--EQANEITGDIEVQRYLDEEWEQLQKDRAFLR-SATKEDEEMMQLPINIQRILES 889 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A K + + L EVI + R+L +RLVVV G D +S EAQ +AT++F + +R Sbjct: 890 A--KSTVRIREGAISDLHPAEVIPQTRDLLDRLVVVRGDDTISREAQESATMLFKAQLR 946 [237][TOP] >UniRef100_C3U0B4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ascosphaera colubrina RepID=C3U0B4_9EURO Length = 963 Score = 112 bits (279), Expect = 2e-23 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GDVVQF+YGEDG+D IE Q + + K + +R+ D +P Sbjct: 768 VKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDVITCSDEKFRQRFRVDFMDPDYTIP 827 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 PD L E + + D ++ + +E Q+++D LR V +E + +P+N+ R++ Sbjct: 828 PDLL--EHGKEIADDIEAQKYLDEEWEQLQKDRNFLR-TVCKEDEEMMQLPINVQRILET 884 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + + L EVI +VREL +RLV+V G D +S EAQ +AT++F +R Sbjct: 885 AKTTFRIREGTV--SDLHPSEVIPQVRELLDRLVIVRGDDSISREAQESATLLFMCQLR 941 [238][TOP] >UniRef100_A9Q9Q1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens RepID=A9Q9Q1_9EURO Length = 999 Score = 112 bits (279), Expect = 2e-23 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI K+++L ERL++V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 951 [239][TOP] >UniRef100_A9Q9Q0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thelidium decipiens RepID=A9Q9Q0_9EURO Length = 977 Score = 112 bits (279), Expect = 2e-23 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 764 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLMEPKKLVW 823 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++ Sbjct: 824 QDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 883 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI K+++L ERL++V G D +S+EAQ NAT++ + +R Sbjct: 884 ARTTF--KIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLLIKAQLR 940 [240][TOP] >UniRef100_A9Q9M9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidiopsis cartilaginea RepID=A9Q9M9_9EURO Length = 989 Score = 112 bits (279), Expect = 2e-23 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y GTVR+S+G++VQF+YGEDG+D IE Q + + ++ +R+D W Sbjct: 775 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDIAFEQQFRVDLMEPTKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR ++ T DE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLVEDRGFLRYIKQAATTSDEMMPLPMNILRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F + P + L VI KV++L +RL+VV G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTFKIQSGSP--SDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLR 951 [241][TOP] >UniRef100_A5H276 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cetraria islandica RepID=A5H276_9LECA Length = 1003 Score = 112 bits (279), Expect = 2e-23 Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+D V IE Q + + + ++ +R+D P + Sbjct: 786 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDIIACSTKQFERKFRVDLMDSKPETSI 845 Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 S E E D ++ + DE Q+++D LR+ + E + +PLN+ R++ A Sbjct: 846 SPEFLEQANEMIGDVETQKHLDDEYRQLEKDRAELRKN-RQDDTENLQLPLNVIRILDTA 904 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K + L EVI +V++L +RLVVV G+D LS EAQ NAT++F +R Sbjct: 905 KTTFKIK--NGARSNLHPAEVIPQVQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLR 960 [242][TOP] >UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CNZ4_ASPCL Length = 1765 Score = 112 bits (279), Expect = 2e-23 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRI---DTTRDMP 173 V+Y GTVRNS GDV+QF+YGEDG+D IE Q + +K KL + +R+ D R + Sbjct: 872 VKYDGTVRNSLGDVIQFIYGEDGLDGGHIENQRVDIIKCSDEKLRERFRVDLMDPERSLG 931 Query: 174 PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWN 353 P+ L E+ + D V++ + +E Q+ +D LR V+ DE + +P+N+ R++ Sbjct: 932 PEVL--EQANEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLPINVQRILET 988 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A++ F + + L EV+ +V+ L +RL+VV G D +S EAQ NAT++F + +R Sbjct: 989 ARSTFRIR--EGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEAQENATLLFKAQLR 1045 [243][TOP] >UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QMP3_9BILA Length = 406 Score = 111 bits (278), Expect = 3e-23 Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP-PD 179 V Y GTVRNS ++Q YGEDG+D + +E Q +K A +K +++D + + Sbjct: 82 VNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQTLPTMKPTHALFEKDFKLDLSDEKTLRK 141 Query: 180 WLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQ 359 + + + L+ + + E Q++ED R+LR ++ NG+ K+ +P NL RL+WNAQ Sbjct: 142 YYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQ 200 Query: 360 TKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ + +P T L VI VREL ++L++V G + +S +AQ NAT++ + LVR Sbjct: 201 KIFHVETRKP--TDLNPLRVIEGVRELSQKLIIVSGENRISKQAQYNATLLMNILVR 255 [244][TOP] >UniRef100_Q0PQ05 DNA-directed RNA polymerase (Fragment) n=1 Tax=Peltigera degenii RepID=Q0PQ05_9LECA Length = 1011 Score = 111 bits (278), Expect = 3e-23 Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMP---- 173 +Y GTVRNS GD+VQF+YGEDG+D V IEGQ+ + + A+ ++ +R+D P Sbjct: 780 KYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQLVDIITCSDARFERKFRVDLMDPRPETSI 839 Query: 174 -PDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIW 350 PD+L E+ + D ++ + +E ++ LR++ + E+V +P N+ R++ Sbjct: 840 SPDFL--EQANEMAGDLEIQGYLDEEYDHLQAARDFLRKD-KRDDLEQVYLPTNIIRILD 896 Query: 351 NAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L EVI +V++L +RLV+V G D LS EAQ+NATI+F + +R Sbjct: 897 TAKTTFKIKD--GARSNLHPAEVIPQVQDLLDRLVIVRGDDSLSREAQQNATILFKAQLR 954 [245][TOP] >UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JYP8_SCHJY Length = 1748 Score = 111 bits (278), Expect = 3e-23 Identities = 63/176 (35%), Positives = 99/176 (56%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 VRY GTVRN+ GD+VQF YGEDG+DA +E Q+F+ L+ +K YRID D Sbjct: 856 VRYDGTVRNAMGDIVQFAYGEDGLDATIVEYQVFDALRLSNVDFEKKYRIDLVEDKK--- 912 Query: 183 LSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQT 362 + ++ D A+++ + +E +Q+ D + R + NG+ + P+N+ R+I N+ Sbjct: 913 ICLHMENSIEGDVAMQELLDEEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQ 972 Query: 363 KFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 F+ +P T L ++I VR L +L V G D ++ E Q NAT++F L+R Sbjct: 973 IFHLDSKKP--TDLLPSDIIYGVRNLISKLSVFRGDDRITKEIQENATLLFQILLR 1026 [246][TOP] >UniRef100_A9Q9T2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria tristis RepID=A9Q9T2_9EURO Length = 988 Score = 111 bits (278), Expect = 3e-23 Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 764 VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 823 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED R LR ++ T DE + +P+N+ R++ Sbjct: 824 QDRLEQASEIHGDVDVQKMFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPMNIVRILNQ 883 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K H + L VI KV+ L +RL++V G D +S+EAQ NAT++ + +R Sbjct: 884 ARTTF--KIHSGSPSDLHPSYVIPKVKLLLDRLIIVRGDDRISLEAQENATLLIKAQLR 940 [247][TOP] >UniRef100_A9Q9R6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria hochstetteri RepID=A9Q9R6_9EURO Length = 999 Score = 111 bits (278), Expect = 3e-23 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI K+++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [248][TOP] >UniRef100_A9Q9R5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Verrucaria hochstetteri RepID=A9Q9R5_9EURO Length = 999 Score = 111 bits (278), Expect = 3e-23 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 775 VKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAFEKLFRVDLMEPKKLVW 834 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED LR ++ T+GDE + +P+N+ R++ Sbjct: 835 QDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAATSGDEMMPLPMNVVRILNQ 894 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 A+T F K + L VI K+++L +RLV+V G D +S+EAQ NAT++ + +R Sbjct: 895 ARTTF--KIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEAQENATLLIKAQLR 951 [249][TOP] >UniRef100_A9Q9N7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Placidium squamulosum RepID=A9Q9N7_9EURO Length = 612 Score = 111 bits (278), Expect = 3e-23 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Frame = +3 Query: 3 VRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDW 182 V+Y TVR+S+G++VQF+YGEDG+D IE Q + + +K +R+D W Sbjct: 398 VKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLMEPKKLVW 457 Query: 183 LS-AEEYEALRTDPAVEQAMRDEMAQIKEDLRVLR--EEVLTNGDEKVNIPLNLARLIWN 353 E+ + D V++ +E Q+ ED + LR ++ T+ DE + +P+N+ R++ Sbjct: 458 HDRLEQASEIHGDIDVQKLFDEEYEQLVEDRKFLRYIKKAATSSDEMMPLPMNVVRILNQ 517 Query: 354 AQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 AQT F K + L VI KV++L ERLV+V G+D +S+EAQ NAT++ + +R Sbjct: 518 AQTTF--KIQTGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLLIKAQLR 574 [250][TOP] >UniRef100_A7J590 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coccocarpia erythroxyli RepID=A7J590_9LECA Length = 997 Score = 111 bits (278), Expect = 3e-23 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 3/178 (1%) Frame = +3 Query: 6 RYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRDMPPDWL 185 +Y GTVRNS GD+VQF+YGEDG+DAV +E Q + + + ++ +R+D P + Sbjct: 766 KYDGTVRNSLGDIVQFVYGEDGIDAVHVEEQRVDIILSSDEQFERKFRVDLMDPRPEISI 825 Query: 186 SAEEYEALRT---DPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNA 356 S+E E D V+ + +E Q++ +LR +V +G + + +P+N+ R++ A Sbjct: 826 SSEYLEQANEIVGDLEVQAYLDEEYEQLQAARDMLR-KVKQDGTDLLQLPINIVRILDTA 884 Query: 357 QTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVR 530 +T F K + L EVI +VREL +RL+VV G D LS E+Q NAT++F + +R Sbjct: 885 KTTFKIK--NGTRSNLHPAEVIPQVRELLDRLIVVRGDDDLSKESQHNATLLFKAQLR 940