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[1][TOP]
>UniRef100_A8J290 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii
RepID=A8J290_CHLRE
Length = 87
Score = 165 bits (418), Expect = 1e-39
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN
Sbjct: 1 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 60
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
PSTGAVLQIAASKAPVFKASVGLKDAV
Sbjct: 61 PSTGAVLQIAASKAPVFKASVGLKDAV 87
[2][TOP]
>UniRef100_C2FFR4 Non-specific DNA-binding protein HBsu n=1 Tax=Lactobacillus
paracasei subsp. paracasei ATCC 25302 RepID=C2FFR4_LACPA
Length = 129
Score = 107 bits (266), Expect = 5e-22
Identities = 55/100 (55%), Positives = 70/100 (70%)
Frame = +2
Query: 89 QAGAEKSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGT 268
Q G E +N KA+L+E++AT GLTK A A D++ G I+D+L GD+V ++GFG
Sbjct: 32 QYGGEMFMAN---KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGN 88
Query: 269 FEVRERAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
FEVRERAAR+GRNP TGA ++I ASK P FK LKDAV
Sbjct: 89 FEVRERAARKGRNPQTGAEIKIPASKVPAFKPGKALKDAV 128
[3][TOP]
>UniRef100_B0TZA8 DNA-binding protein HU-beta n=2 Tax=Francisella philomiragia
RepID=B0TZA8_FRAP2
Length = 90
Score = 106 bits (264), Expect = 9e-22
Identities = 52/87 (59%), Positives = 66/87 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV AIA E +TK+VA+ D+ I + AL NGD VT+VGFGTF+V+ER+AR+GRN
Sbjct: 3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FKA GLKDAV
Sbjct: 63 PKTGETIKIAASKVPSFKAGKGLKDAV 89
[4][TOP]
>UniRef100_B3WE81 Histone-like DNA-binding protein HU n=3 Tax=Lactobacillus casei
group RepID=B3WE81_LACCB
Length = 91
Score = 105 bits (263), Expect = 1e-21
Identities = 51/87 (58%), Positives = 65/87 (74%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E++AT GLTK A A D++ G I+D+L GD+V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90
[5][TOP]
>UniRef100_A9ELM1 DNA-binding protein, HU family n=1 Tax=Shewanella benthica KT99
RepID=A9ELM1_9GAMM
Length = 90
Score = 105 bits (262), Expect = 2e-21
Identities = 50/88 (56%), Positives = 66/88 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IAT ++K A +A DS IG + D+L NGD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIATGADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGAEIKIAAANIPAFKAGKALKDAVN 90
[6][TOP]
>UniRef100_B8GNU1 Histone family protein DNA-binding protein n=1 Tax=Thioalkalivibrio
sp. HL-EbGR7 RepID=B8GNU1_THISH
Length = 90
Score = 104 bits (260), Expect = 3e-21
Identities = 56/88 (63%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA L K AA+A D++I I AL NGD+VTIVGFGTF VRER AR GRN
Sbjct: 3 KSELIDAIAASSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAASK P FKA GLKDAVN
Sbjct: 63 PRTGETIQIAASKMPSFKAGKGLKDAVN 90
[7][TOP]
>UniRef100_UPI0001BB9721 DNA-binding protein HU-beta n=1 Tax=Acinetobacter johnsonii SH046
RepID=UPI0001BB9721
Length = 90
Score = 104 bits (259), Expect = 3e-21
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + GL+K A KA D+ I I +AL +GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA L+I ASK P FKA GLKD+V
Sbjct: 63 PQTGATLEIKASKVPSFKAGKGLKDSV 89
[8][TOP]
>UniRef100_C7TCE3 DNA-binding protein n=4 Tax=Lactobacillus rhamnosus
RepID=C7TCE3_LACRG
Length = 91
Score = 104 bits (259), Expect = 3e-21
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E++A+ GLTK A A D++ G I+D+L GD+V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90
[9][TOP]
>UniRef100_UPI0001BBA3B9 integration host factor, beta subunit n=1 Tax=Acinetobacter lwoffii
SH145 RepID=UPI0001BBA3B9
Length = 90
Score = 103 bits (258), Expect = 5e-21
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + GL+K A KA D+ I + +AL +GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA L+I ASK P FKA GLKDAV
Sbjct: 63 PQTGATLEIKASKVPSFKAGKGLKDAV 89
[10][TOP]
>UniRef100_Q38WW4 Histone-like DNA-binding protein HU n=1 Tax=Lactobacillus sakei
subsp. sakei 23K RepID=Q38WW4_LACSS
Length = 91
Score = 103 bits (258), Expect = 5e-21
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E +A++ GLTK A A D++ G I+D L GD+V ++GFGTFEVRERAAR+GRN
Sbjct: 4 KAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKD+V
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDSV 90
[11][TOP]
>UniRef100_C9LW59 DNA-binding protein HU n=1 Tax=Selenomonas sputigena ATCC 35185
RepID=C9LW59_9FIRM
Length = 92
Score = 103 bits (258), Expect = 5e-21
Identities = 50/90 (55%), Positives = 68/90 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV +A + GL+K VA +A ++I IE+AL+ GD+V ++GFGTFEV++RAAR GRN
Sbjct: 3 KTELVANVAEKAGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGR 397
P TG ++IAAS+ PVFKA LKDAVN +
Sbjct: 63 PQTGKEIKIAASRNPVFKAGKALKDAVNNK 92
[12][TOP]
>UniRef100_A4IYB3 DNA-binding protein HU-beta n=11 Tax=Francisella tularensis
RepID=A4IYB3_FRATW
Length = 90
Score = 103 bits (258), Expect = 5e-21
Identities = 51/87 (58%), Positives = 65/87 (74%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV AIA E +TK+VA+ D+ I + AL NGD VT+VGFGTF+V+ER+ R+GRN
Sbjct: 3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FKAS GLKDAV
Sbjct: 63 PKTGETIKIPASKVPSFKASKGLKDAV 89
[13][TOP]
>UniRef100_Q3JAA2 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani
RepID=Q3JAA2_NITOC
Length = 90
Score = 103 bits (257), Expect = 6e-21
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E++A LTK AA+A DS+I + DAL GD+VTIVGFGTF VR+RAAR GRN
Sbjct: 3 KSELIESVADAGNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I ASK P FKA LKDAVN
Sbjct: 63 PQTGEEIKIKASKMPSFKAGKALKDAVN 90
[14][TOP]
>UniRef100_Q0A6B0 Histone family protein DNA-binding protein n=1 Tax=Alkalilimnicola
ehrlichii MLHE-1 RepID=Q0A6B0_ALHEH
Length = 90
Score = 102 bits (255), Expect = 1e-20
Identities = 50/88 (56%), Positives = 66/88 (75%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EA+A ++K A++A DS++ + +AL GD+VT+VGFGTF+VRERAAR GRN
Sbjct: 3 KSELIEAVAQSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAASK P FKA LKDAVN
Sbjct: 63 PRTGETINIAASKVPSFKAGKALKDAVN 90
[15][TOP]
>UniRef100_C2E8P8 Non-specific DNA-binding protein HBsu n=1 Tax=Lactobacillus ruminis
ATCC 25644 RepID=C2E8P8_9LACO
Length = 91
Score = 102 bits (254), Expect = 1e-20
Identities = 50/87 (57%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E +A + GLTK A A D++ G I+D L GD+V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAQLIETVAEKTGLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKDAV 90
[16][TOP]
>UniRef100_A0Q6S6 DNA-binding protein HU-beta n=3 Tax=Francisella novicida
RepID=A0Q6S6_FRATN
Length = 90
Score = 102 bits (254), Expect = 1e-20
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV AIA E +TK+VA+ D+ I + AL NGD VT+VGFGTF+V+ER+ R+GRN
Sbjct: 3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FKA GLKDAV
Sbjct: 63 PKTGETIKIPASKVPSFKAGKGLKDAV 89
[17][TOP]
>UniRef100_C6RLX3 DNA-binding protein HU-beta n=1 Tax=Acinetobacter radioresistens
SK82 RepID=C6RLX3_ACIRA
Length = 90
Score = 101 bits (252), Expect = 2e-20
Identities = 53/87 (60%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + GL+K A KA D+ I I +AL GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG LQI ASK P FKA GLKD+V
Sbjct: 63 PKTGEELQIKASKVPSFKAGKGLKDSV 89
[18][TOP]
>UniRef100_C0VL93 DNA-binding protein HU-beta n=1 Tax=Acinetobacter sp. ATCC 27244
RepID=C0VL93_9GAMM
Length = 90
Score = 101 bits (252), Expect = 2e-20
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + G++K A KA D+ I I +AL GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG LQI ASK P FKA GLKD+V
Sbjct: 63 PKTGEELQIKASKVPSFKAGKGLKDSV 89
[19][TOP]
>UniRef100_UPI000196696B hypothetical protein SUBVAR_00614 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI000196696B
Length = 90
Score = 101 bits (251), Expect = 3e-20
Identities = 51/87 (58%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A E LTK A +A ++ + I +AL NGD+VT+VGFGTFEVRER AR+GRN
Sbjct: 3 KVELIAAVANEANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA + I ASK P FKA LKDAV
Sbjct: 63 PQTGAEITIEASKLPAFKAGKALKDAV 89
[20][TOP]
>UniRef100_A1HRU5 Histone family protein DNA-binding protein n=1 Tax=Thermosinus
carboxydivorans Nor1 RepID=A1HRU5_9FIRM
Length = 91
Score = 101 bits (251), Expect = 3e-20
Identities = 49/88 (55%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ ++A + G+TK A KA +++ IE+AL D+V I+GFGTFEVR R AR+GRN
Sbjct: 3 KTELIASVAEKAGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I ASK+PVFKA GLKDAVN
Sbjct: 63 PQTGKEIDIPASKSPVFKAGKGLKDAVN 90
[21][TOP]
>UniRef100_A0Y365 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Alteromonadales
bacterium TW-7 RepID=A0Y365_9GAMM
Length = 91
Score = 101 bits (251), Expect = 3e-20
Identities = 51/88 (57%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LVE IAT+ ++K A +A D+ G + AL GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KAQLVEKIATDAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QIAA+ P FKA GLKD VN
Sbjct: 63 PQTGAEIQIAAATIPSFKAGKGLKDQVN 90
[22][TOP]
>UniRef100_B7GHP4 DNA-binding protein HU-alpha (Histone-like protein) n=1
Tax=Anoxybacillus flavithermus WK1 RepID=B7GHP4_ANOFW
Length = 101
Score = 100 bits (250), Expect = 4e-20
Identities = 50/91 (54%), Positives = 64/91 (70%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K +L+ A+A GL+K A+KA D++ I +AL NGD+V ++GFG FEVRERAAR
Sbjct: 10 NGMNKTELINAVAEASGLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAAR 69
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+GRNP TG ++IAASK P FK LKDAV
Sbjct: 70 KGRNPQTGEEIEIAASKVPAFKPGKALKDAV 100
[23][TOP]
>UniRef100_A6VW23 Histone family protein DNA-binding protein n=1 Tax=Marinomonas sp.
MWYL1 RepID=A6VW23_MARMS
Length = 90
Score = 100 bits (250), Expect = 4e-20
Identities = 51/88 (57%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA L+K A+ A D+ + IE AL GD+VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI A+K P FKA GLKDAVN
Sbjct: 63 PQTGEEIQIKAAKVPGFKAGKGLKDAVN 90
[24][TOP]
>UniRef100_Q47XM2 DNA-binding protein, HU family n=1 Tax=Colwellia psychrerythraea
34H RepID=Q47XM2_COLP3
Length = 90
Score = 100 bits (249), Expect = 5e-20
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA ++K A +A DS IG + D L +G++V +VGFGTF VR+RAAR GRN
Sbjct: 3 KSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QIAA+K P FKA LKDA N
Sbjct: 63 PQTGATIQIAAAKIPSFKAGKALKDACN 90
[25][TOP]
>UniRef100_B6IUF3 DNA-binding protein HupB n=1 Tax=Rhodospirillum centenum SW
RepID=B6IUF3_RHOCS
Length = 91
Score = 100 bits (249), Expect = 5e-20
Identities = 51/89 (57%), Positives = 60/89 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA L EA+A G +K AAK D++ I+ AL G+ V + GFGTF V ERAAR+GRN
Sbjct: 3 KADLAEAVAQATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNG 394
P TGA +QIAASK P F A LKDAVNG
Sbjct: 63 PQTGATIQIAASKQPKFTAGKALKDAVNG 91
[26][TOP]
>UniRef100_B6XA87 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens
DSM 30120 RepID=B6XA87_9ENTR
Length = 96
Score = 100 bits (249), Expect = 5e-20
Identities = 47/89 (52%), Positives = 63/89 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA E ++K A + D+ + + +L GD VT+VGFGTF VR+RAAR GRN
Sbjct: 8 KSQLIEKIAAEANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTGRN 67
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNG 394
P TG ++IAA+K P F+A GLKDAVNG
Sbjct: 68 PQTGKEIKIAAAKVPAFRAGKGLKDAVNG 96
[27][TOP]
>UniRef100_Q3ICD1 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Pseudoalteromonas
haloplanktis TAC125 RepID=Q3ICD1_PSEHT
Length = 91
Score = 100 bits (248), Expect = 6e-20
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LVE IAT+ ++K A +A D+ G + +L GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QIAA+ P FKA GLKD VN
Sbjct: 63 PQTGAEIQIAAATIPSFKAGKGLKDQVN 90
[28][TOP]
>UniRef100_B8I5L8 Histone family protein DNA-binding protein n=1 Tax=Clostridium
cellulolyticum H10 RepID=B8I5L8_CLOCE
Length = 91
Score = 100 bits (248), Expect = 6e-20
Identities = 51/88 (57%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ L+ +IAT+ GL K + A ++ I +E+ L GD+VT+VGFGTFEVRERAAR+GRN
Sbjct: 3 KSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAPVFKA GLKD VN
Sbjct: 63 PQTKEEITIPASKAPVFKAGKGLKDNVN 90
[29][TOP]
>UniRef100_B1HTA2 DNA-binding protein HU (DNA-binding protein II) (HB) n=1
Tax=Lysinibacillus sphaericus C3-41 RepID=B1HTA2_LYSSC
Length = 93
Score = 100 bits (248), Expect = 6e-20
Identities = 49/91 (53%), Positives = 64/91 (70%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K +LV ++A GL+K A+KA +++ I+DAL GD+V ++GFG FEVRERAAR
Sbjct: 2 NGVNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAAR 61
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+GRNP TG ++IAASK P FK LKDAV
Sbjct: 62 KGRNPQTGKEIEIAASKVPAFKPGKALKDAV 92
[30][TOP]
>UniRef100_A1WUM4 Histone family protein DNA-binding protein n=1 Tax=Halorhodospira
halophila SL1 RepID=A1WUM4_HALHL
Length = 90
Score = 100 bits (248), Expect = 6e-20
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EA+A L+K AA+A D+++ + DAL GD+VT+VGFGTF VRERAAR GRN
Sbjct: 3 KSELIEAVADSADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I ASK P FK LKDA+N
Sbjct: 63 PRTGESIDIPASKVPGFKPGKALKDAIN 90
[31][TOP]
>UniRef100_A3M570 DNA-binding protein HU-beta n=8 Tax=Acinetobacter
RepID=A3M570_ACIBT
Length = 90
Score = 100 bits (248), Expect = 6e-20
Identities = 51/87 (58%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + G++K A KA D+ I I +AL GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG LQI A+K P FKA GLKD+V
Sbjct: 63 PKTGEELQIKATKVPSFKAGKGLKDSV 89
[32][TOP]
>UniRef100_C8N866 DNA-binding protein HU-beta n=1 Tax=Cardiobacterium hominis ATCC
15826 RepID=C8N866_9GAMM
Length = 103
Score = 100 bits (248), Expect = 6e-20
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+AIA +TK A KA ++++ + + L GD+VT++GFGTFE RERAAR GRN
Sbjct: 3 KTELVDAIAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN-GREPKPAAAK 421
P TG +QIAAS P FKA LKDA+N + KPAA K
Sbjct: 63 PQTGKEIQIAASITPAFKAGKKLKDALNVPAKGKPAAKK 101
[33][TOP]
>UniRef100_C7R6D4 Histone family protein DNA-binding protein n=1 Tax=Kangiella
koreensis DSM 16069 RepID=C7R6D4_KANKD
Length = 90
Score = 100 bits (248), Expect = 6e-20
Identities = 48/88 (54%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA ++K A +A DS++G I D+L G++V++VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAAGADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI A+K P FKA LKDAVN
Sbjct: 63 PKTGETIQIKAAKVPGFKAGKALKDAVN 90
[34][TOP]
>UniRef100_C7IDB4 Histone family protein DNA-binding protein n=1 Tax=Clostridium
papyrosolvens DSM 2782 RepID=C7IDB4_9CLOT
Length = 91
Score = 100 bits (248), Expect = 6e-20
Identities = 51/88 (57%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ L+ +IAT+ GL K + A ++ I +E+ L GD+VT+VGFGTFEVRERAAR+GRN
Sbjct: 3 KSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAPVFKA GLKD VN
Sbjct: 63 PQTKEEITIPASKAPVFKAGKGLKDNVN 90
[35][TOP]
>UniRef100_B6BWB1 DNA-binding protein HU-beta n=1 Tax=beta proteobacterium KB13
RepID=B6BWB1_9PROT
Length = 90
Score = 100 bits (248), Expect = 6e-20
Identities = 52/88 (59%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+EAIA+ G TK A +A D+ I I AL GD VT++GFGTF+V +RAAR GRN
Sbjct: 3 KGELIEAIASATGSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA L+I A K P FKA GLKDAVN
Sbjct: 63 PQTGAELKIPARKVPSFKAGAGLKDAVN 90
[36][TOP]
>UniRef100_UPI0001BB966B integration host factor, beta subunit n=1 Tax=Acinetobacter junii
SH205 RepID=UPI0001BB966B
Length = 90
Score = 99.8 bits (247), Expect = 8e-20
Identities = 51/87 (58%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + G++K A KA D+ I I +AL GD VT+VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG LQI ASK P FK GLKD+V
Sbjct: 63 PKTGEELQIKASKVPSFKPGKGLKDSV 89
[37][TOP]
>UniRef100_Q6FCD8 DNA-binding protein HU-beta n=1 Tax=Acinetobacter sp. ADP1
RepID=Q6FCD8_ACIAD
Length = 90
Score = 99.8 bits (247), Expect = 8e-20
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + GL+K A KA D+ I + +AL GD VT+VGFGTF V++RAAR GRN
Sbjct: 3 KSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG LQI A+K P FKA GLKD+V
Sbjct: 63 PKTGEELQIKATKVPSFKAGKGLKDSV 89
[38][TOP]
>UniRef100_C9XSA0 DNA-binding protein HU n=4 Tax=Clostridium difficile
RepID=C9XSA0_CLODI
Length = 92
Score = 99.8 bits (247), Expect = 8e-20
Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + GLTK A A ++ + ++DAL+N ++V +VGFGTFE RERAARQGRN
Sbjct: 3 KAELVSKMAEKSGLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQGRN 62
Query: 308 P-STGAVLQIAASKAPVFKASVGLKDAVNG 394
P V+ I ASKAPVFKA GLKD +NG
Sbjct: 63 PRDPEQVIDIPASKAPVFKAGKGLKDIING 92
[39][TOP]
>UniRef100_C3ECC2 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis serovar
pakistani str. T13001 RepID=C3ECC2_BACTU
Length = 91
Score = 99.8 bits (247), Expect = 8e-20
Identities = 51/88 (57%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ +A + GL K A+ A D+L+ I+ AL NGD V ++GFGTFEVRERAAR+GRN
Sbjct: 3 KTELITQVAVKTGLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
PSTG L I A KAP FKA LK+AVN
Sbjct: 63 PSTGESLVIPAKKAPAFKAGKVLKEAVN 90
[40][TOP]
>UniRef100_B2FQR5 Putative DNA-binding protein HU-beta n=1 Tax=Stenotrophomonas
maltophilia K279a RepID=B2FQR5_STRMK
Length = 90
Score = 99.4 bits (246), Expect = 1e-19
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++A+A LTK +++A D+++ I AL +GD VT+VGFGTF+VR+RAAR GRN
Sbjct: 3 KTELIDAVAEAADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAASK P FKA LKDAVN
Sbjct: 63 PKTGDTIKIAASKNPSFKAGKALKDAVN 90
[41][TOP]
>UniRef100_A8FTI2 Histone family protein DNA-binding protein n=1 Tax=Shewanella
sediminis HAW-EB3 RepID=A8FTI2_SHESH
Length = 90
Score = 99.4 bits (246), Expect = 1e-19
Identities = 47/88 (53%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS IG + D L GD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKALKDAVN 90
[42][TOP]
>UniRef100_C5TJJ4 DNA-binding protein HU-beta n=1 Tax=Neisseria flavescens SK114
RepID=C5TJJ4_NEIFL
Length = 89
Score = 99.4 bits (246), Expect = 1e-19
Identities = 50/87 (57%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA E G++K A KA D+ + +AL NGD VT+VGFGTF V ERA RQGRN
Sbjct: 3 KSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG L IAA+K P F+A LKDA+
Sbjct: 63 PKTGEPLTIAAAKTPKFRAGKALKDAL 89
[43][TOP]
>UniRef100_C0EK55 Putative uncharacterized protein n=1 Tax=Neisseria flavescens
NRL30031/H210 RepID=C0EK55_NEIFL
Length = 109
Score = 99.4 bits (246), Expect = 1e-19
Identities = 50/87 (57%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA E G++K A KA D+ + +AL NGD VT+VGFGTF V ERA RQGRN
Sbjct: 23 KSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQGRN 82
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG L IAA+K P F+A LKDA+
Sbjct: 83 PKTGEPLTIAAAKTPKFRAGKALKDAL 109
[44][TOP]
>UniRef100_B0TLU6 Histone family protein DNA-binding protein n=2 Tax=Shewanella
RepID=B0TLU6_SHEHH
Length = 90
Score = 99.0 bits (245), Expect = 1e-19
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS IG + D L GD++ +VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKALKDAVN 90
[45][TOP]
>UniRef100_A0KJU4 DNA-binding protein HU-beta n=3 Tax=Aeromonas RepID=A0KJU4_AERHH
Length = 90
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D+ I + +AL GD+V +VGFGTF VRERAAR GRN
Sbjct: 3 KSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA K P FKA LKDAVN
Sbjct: 63 PQTGATIEIAAGKVPAFKAGKALKDAVN 90
[46][TOP]
>UniRef100_Q03WN5 Bacterial nucleoid protein Hbs n=2 Tax=Leuconostoc mesenteroides
RepID=Q03WN5_LEUMM
Length = 91
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+++A GLTK A + D++ IE+AL NG++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASK P FK LKDAV
Sbjct: 64 PQTGEEIQIAASKVPAFKPGKALKDAV 90
[47][TOP]
>UniRef100_Q1WTQ5 DNA-binding protein HU n=2 Tax=Lactobacillus salivarius
RepID=Q1WTQ5_LACS1
Length = 91
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA L+E +A + GLTK A A D++ I+DAL++G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 64 PQTGEEIEIPASKVPAFKPGKSLKDAV 90
[48][TOP]
>UniRef100_C0X5D9 DNA-binding protein HU n=22 Tax=Enterococcus faecalis
RepID=C0X5D9_ENTFA
Length = 91
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E +A+ GLTK A A D++ I++ L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASK P FK LKDAV
Sbjct: 64 PQTGQEIQIAASKVPAFKPGKALKDAV 90
[49][TOP]
>UniRef100_C0H343 Histone family protein DNA-binding protein n=1 Tax=Halothiobacillus
neapolitanus c2 RepID=C0H343_THINE
Length = 90
Score = 99.0 bits (245), Expect = 1e-19
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++A+A + G+ K +A A D+ I + DAL GD+VT+VGFGTF VRER AR GRN
Sbjct: 3 KSELIDAMAAKSGMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P +G ++IAAS+ P FKA GLKDAVN
Sbjct: 63 PRSGETIEIAASRLPSFKAGKGLKDAVN 90
[50][TOP]
>UniRef100_B4SLN4 Histone family protein DNA-binding protein n=3 Tax=Stenotrophomonas
RepID=B4SLN4_STRM5
Length = 90
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/88 (54%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++A+A LTK +++A D+++ + AL +GD VT+VGFGTF+VR+RAAR GRN
Sbjct: 3 KTELIDAVAEAADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAASK P FKA LKDAVN
Sbjct: 63 PKTGDTIKIAASKNPSFKAGKALKDAVN 90
[51][TOP]
>UniRef100_A6CTI0 Non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component n=1 Tax=Bacillus sp. SG-1
RepID=A6CTI0_9BACI
Length = 90
Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA D++ I+DAL NGD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELINAVAEAAELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I+ASK P FK LKDAV
Sbjct: 63 PQTGEEIEISASKVPAFKPGKALKDAV 89
[52][TOP]
>UniRef100_Q5E6Q2 HU, DNA-binding transcriptional regulator, beta subunit n=1
Tax=Vibrio fischeri ES114 RepID=Q5E6Q2_VIBF1
Length = 98
Score = 98.6 bits (244), Expect = 2e-19
Identities = 47/92 (51%), Positives = 65/92 (70%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
NT K++LV+ IA ++K A +A D+L+ + + L +GD+VT+VGFG+F VRERAAR
Sbjct: 7 NTVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAAR 66
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG ++I+A+K P FKA LKDA N
Sbjct: 67 TGRNPKTGEAIEISAAKVPAFKAGKALKDACN 98
[53][TOP]
>UniRef100_B1KLT4 Histone family protein DNA-binding protein n=1 Tax=Shewanella
woodyi ATCC 51908 RepID=B1KLT4_SHEWM
Length = 90
Score = 98.6 bits (244), Expect = 2e-19
Identities = 47/88 (53%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + D L +GD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGAEIKIAAANIPAFKAGKALKDAVN 90
[54][TOP]
>UniRef100_A0KYL6 Histone family protein DNA-binding protein n=1 Tax=Shewanella sp.
ANA-3 RepID=A0KYL6_SHESA
Length = 90
Score = 98.6 bits (244), Expect = 2e-19
Identities = 47/88 (53%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + + L GD++++VGFGTFEVRERA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGQEIKIAAAKIPAFKAGKALKDAVN 90
[55][TOP]
>UniRef100_C2HA77 DNA-binding protein II n=11 Tax=Enterococcus faecium
RepID=C2HA77_ENTFC
Length = 91
Score = 98.6 bits (244), Expect = 2e-19
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E +A+ LTK A A D++ I+DAL NG++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 64 PQTGEEIEIPASKVPAFKPGKALKDAV 90
[56][TOP]
>UniRef100_A4BM12 DNA-binding protein HU-beta, NS1 n=1 Tax=Nitrococcus mobilis Nb-231
RepID=A4BM12_9GAMM
Length = 90
Score = 98.6 bits (244), Expect = 2e-19
Identities = 49/88 (55%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E +A L+K A++A D+ + + DAL GD+VT+VGFGTF VRERAAR GRN
Sbjct: 3 KSELIEVVAQSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I ASK P FKA LKDAVN
Sbjct: 63 PRTGESITIPASKTPGFKAGKALKDAVN 90
[57][TOP]
>UniRef100_A3IEI4 DNA-binding protein HU (DNA-binding protein II) n=1 Tax=Bacillus
sp. B14905 RepID=A3IEI4_9BACI
Length = 90
Score = 98.6 bits (244), Expect = 2e-19
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV ++A GL+K A+KA +++ I+DAL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDAV
Sbjct: 63 PQTGKEIEIAASKVPAFKPGKALKDAV 89
[58][TOP]
>UniRef100_A1RL86 Histone family protein DNA-binding protein n=10 Tax=Shewanella
RepID=A1RL86_SHESW
Length = 90
Score = 98.6 bits (244), Expect = 2e-19
Identities = 47/88 (53%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + + L GD++++VGFGTFEVRERA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGEEIKIAAAKIPAFKAGKALKDAVN 90
[59][TOP]
>UniRef100_UPI0001972AFC hypothetical protein NEILACOT_01232 n=1 Tax=Neisseria lactamica
ATCC 23970 RepID=UPI0001972AFC
Length = 89
Score = 98.2 bits (243), Expect = 2e-19
Identities = 50/87 (57%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA E G++K A KA D+ + DAL GD VT+VGFGTF V ERA RQGRN
Sbjct: 3 KSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG L IAA+K P F+A LKDA+
Sbjct: 63 PKTGEPLTIAAAKTPKFRAGKALKDAL 89
[60][TOP]
>UniRef100_Q5QXP1 Bacterial nucleoid DNA-binding protein HU-beta n=1 Tax=Idiomarina
loihiensis RepID=Q5QXP1_IDILO
Length = 90
Score = 98.2 bits (243), Expect = 2e-19
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A DS+I + DAL D+V +VGFGTF VRER+AR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA+K P FKA LKDAVN
Sbjct: 63 PQTGETIQIAAAKVPSFKAGKALKDAVN 90
[61][TOP]
>UniRef100_Q21KA6 Bacterial nucleoid protein HU beta subunit n=1 Tax=Saccharophagus
degradans 2-40 RepID=Q21KA6_SACD2
Length = 90
Score = 98.2 bits (243), Expect = 2e-19
Identities = 49/88 (55%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA ++K A +A D++ I +AL NGD+V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA+K P FK LKDAVN
Sbjct: 63 PQTGAPIEIAAAKIPSFKPGKALKDAVN 90
[62][TOP]
>UniRef100_B6EHK7 DNA-binding protein HU-beta n=1 Tax=Aliivibrio salmonicida LFI1238
RepID=B6EHK7_ALISL
Length = 98
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/92 (51%), Positives = 65/92 (70%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
NT K++LV+ IA ++K A +A D+L+ + + L +GD+VT+VGFG+F VRERAAR
Sbjct: 7 NTVNKSQLVDQIAENADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAAR 66
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG ++I+A+K P FKA LKDA N
Sbjct: 67 TGRNPKTGEAIEISAAKVPAFKAGKALKDACN 98
[63][TOP]
>UniRef100_A8FEL3 Non-specific DNA-binding protein HBsu n=2 Tax=Bacillus pumilus
RepID=A8FEL3_BACP2
Length = 92
Score = 98.2 bits (243), Expect = 2e-19
Identities = 49/90 (54%), Positives = 63/90 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA DS+ I DAL NGD++ ++GFG FEVRER+AR+GRN
Sbjct: 3 KTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGR 397
P TGA ++I ASK P FK LKDAV G+
Sbjct: 63 PQTGAEIEIPASKVPAFKPGKALKDAVAGK 92
[64][TOP]
>UniRef100_Q5H431 Histone-like protein n=1 Tax=Xanthomonas oryzae pv. oryzae
RepID=Q5H431_XANOR
Length = 145
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/105 (49%), Positives = 68/105 (64%)
Frame = +2
Query: 77 VVRAQAGAEKSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIV 256
+V + A A K S K +L++ +A ++K A +A D+++ I AL GD VT+V
Sbjct: 42 IVDSAASAAKGVSRMN-KTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLV 100
Query: 257 GFGTFEVRERAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GFGTF+VRERA R GRNP TG ++IAASK P FKA LKDAVN
Sbjct: 101 GFGTFQVRERAERTGRNPKTGDSIKIAASKNPAFKAGKALKDAVN 145
[65][TOP]
>UniRef100_Q1WRB9 DNA-binding protein HU n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WRB9_LACS1
Length = 91
Score = 97.8 bits (242), Expect = 3e-19
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVEAIA ++G TK A A + +++AL++G +V I+GFG FEVRERAAR+GRN
Sbjct: 3 KNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I ASK P FK GLKDAVN
Sbjct: 63 PQTGKEIEIPASKVPAFKPGKGLKDAVN 90
[66][TOP]
>UniRef100_B0RTF3 Histone-like protein n=1 Tax=Xanthomonas campestris pv. campestris
str. B100 RepID=B0RTF3_XANCB
Length = 132
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/105 (49%), Positives = 68/105 (64%)
Frame = +2
Query: 77 VVRAQAGAEKSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIV 256
+V + A A K S K +L++ +A ++K A +A D+++ I AL GD VT+V
Sbjct: 29 IVDSAASAAKGVSRMN-KTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLV 87
Query: 257 GFGTFEVRERAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GFGTF+VRERA R GRNP TG ++IAASK P FKA LKDAVN
Sbjct: 88 GFGTFQVRERAERTGRNPKTGDSIKIAASKNPAFKAGKALKDAVN 132
[67][TOP]
>UniRef100_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544
RepID=C9KMW2_9FIRM
Length = 91
Score = 97.8 bits (242), Expect = 3e-19
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV ++A + GLTK A KA ++ I+ AL+ GD+V ++GFGTFEV+ER+AR GRN
Sbjct: 3 KNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T +QI ASK P FKA LKDAVN
Sbjct: 63 PRTNETIQIPASKNPAFKAGKALKDAVN 90
[68][TOP]
>UniRef100_C6PHS9 Histone family protein DNA-binding protein n=2
Tax=Thermoanaerobacter RepID=C6PHS9_9THEO
Length = 91
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/88 (59%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA LV IA + LTK A KA ++ I +E+AL NGD+V +VGFGTFEVRERA R+GRN
Sbjct: 3 KADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAP+FKA LKD VN
Sbjct: 63 PQTREEITIPASKAPIFKAGKALKDLVN 90
[69][TOP]
>UniRef100_B0K4Q5 Histone family protein DNA-binding protein n=6
Tax=Thermoanaerobacter RepID=B0K4Q5_THEPX
Length = 91
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/88 (59%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA LV IA + LTK A KA ++ I +E+AL NGD+V +VGFGTFEVRERA R+GRN
Sbjct: 3 KADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAP+FKA LKD VN
Sbjct: 63 PQTKEEITIPASKAPIFKAGKALKDLVN 90
[70][TOP]
>UniRef100_C2EIY3 DNA-binding protein HU n=1 Tax=Lactobacillus salivarius ATCC 11741
RepID=C2EIY3_9LACO
Length = 91
Score = 97.8 bits (242), Expect = 3e-19
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVEAIA ++G TK A A + +++AL++G +V I+GFG FEVRERAAR+GRN
Sbjct: 3 KNELVEAIAEKMGTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I ASK P FK GLKDAVN
Sbjct: 63 PQTGKEIEIPASKVPAFKPGKGLKDAVN 90
[71][TOP]
>UniRef100_Q8R7F9 Bacterial nucleoid DNA-binding protein n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R7F9_THETN
Length = 91
Score = 97.4 bits (241), Expect = 4e-19
Identities = 51/88 (57%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV IA + LTK A KA ++ I +++AL NGD+V +VGFGTFEVRERA R+GRN
Sbjct: 3 KAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAP+FKA LKD VN
Sbjct: 63 PQTREEITIPASKAPIFKAGKALKDLVN 90
[72][TOP]
>UniRef100_Q484B2 DNA-binding protein, HU family n=1 Tax=Colwellia psychrerythraea
34H RepID=Q484B2_COLP3
Length = 91
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/88 (55%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LVE IA ++K A +A DSLIG + L NG V +VGFGT++V +RAAR GRN
Sbjct: 3 KSELVEKIAEGADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QI+A+K P FKA LKDAVN
Sbjct: 63 PQTGAEIQISAAKVPAFKAGKALKDAVN 90
[73][TOP]
>UniRef100_Q31GE8 Histone-like DNA-binding protein n=1 Tax=Thiomicrospira crunogena
XCL-2 RepID=Q31GE8_THICR
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV AIA E GLTK AAKA ++ + + AL +GD V I+GFGTF+V ER+AR GRN
Sbjct: 3 KTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QI A+K P F A LK+AVN
Sbjct: 63 PQTGAEMQIPAAKVPKFSAGKALKEAVN 90
[74][TOP]
>UniRef100_Q2SK32 Bacterial nucleoid DNA-binding protein n=1 Tax=Hahella chejuensis
KCTC 2396 RepID=Q2SK32_HAHCH
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 44/88 (50%), Positives = 65/88 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++A+A ++K A +A D+++ + +AL G++VT++GFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I A+K P FKA LKDAVN
Sbjct: 63 PQTGATIKIDAAKVPSFKAGKALKDAVN 90
[75][TOP]
>UniRef100_Q1GX85 Bacterial nucleoid protein HU beta subunit n=1 Tax=Methylobacillus
flagellatus KT RepID=Q1GX85_METFK
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/88 (55%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+E IA E G++K A KA D+ + AL +GD VT++GFGTF V ERAAR GRN
Sbjct: 3 KTELIEEIAKEAGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA KAP FKA LKDA+N
Sbjct: 63 PQTGKEIKIAARKAPSFKAGKALKDALN 90
[76][TOP]
>UniRef100_B3PHK3 DNA-binding protein HU superfamily n=1 Tax=Cellvibrio japonicus
Ueda107 RepID=B3PHK3_CELJU
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/88 (55%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+EAIA + K A +A D+++ I AL NGD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KTELIEAIAASADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGEEIKIAAAKVPGFKAGKALKDAVN 90
[77][TOP]
>UniRef100_A8H611 Histone family protein DNA-binding protein n=1 Tax=Shewanella
pealeana ATCC 700345 RepID=A8H611_SHEPA
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS IG + + L GD++ +VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKALKDAVN 90
[78][TOP]
>UniRef100_A3QFX3 Histone family protein DNA-binding protein n=1 Tax=Shewanella
loihica PV-4 RepID=A3QFX3_SHELP
Length = 90
Score = 97.4 bits (241), Expect = 4e-19
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + D L +GD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKALKDAVN 90
[79][TOP]
>UniRef100_C4V3G7 DNA-binding protein HU n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V3G7_9FIRM
Length = 100
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/91 (53%), Positives = 65/91 (71%)
Frame = +2
Query: 119 TTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQ 298
T K +LV +A + LTK A KA ++L I+ AL GD+V ++GFGTFEV++R AR+
Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARK 69
Query: 299 GRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG V++IAAS+ PVFKA LKD+VN
Sbjct: 70 GRNPQTGKVIEIAASRNPVFKAGKALKDSVN 100
[80][TOP]
>UniRef100_C2LN92 DNA-binding protein HU-beta n=1 Tax=Proteus mirabilis ATCC 29906
RepID=C2LN92_PROMI
Length = 96
Score = 97.4 bits (241), Expect = 4e-19
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = +2
Query: 119 TTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQ 298
+ K +L++ IA +TK A + D+++ I ++L GD V +VGFGTF VR+RAAR
Sbjct: 5 SVNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAART 64
Query: 299 GRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG +QIAA+K P F+A GLKDAVN
Sbjct: 65 GRNPQTGKEIQIAAAKVPAFRAGKGLKDAVN 95
[81][TOP]
>UniRef100_UPI0001850F4C hypothetical protein Bcoam_11505 n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001850F4C
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 47/87 (54%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA D++ I++AL NGD+V ++GFG FEVRER+AR+GRN
Sbjct: 3 KTELINAVAEATELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDAV
Sbjct: 63 PQTGEEIEIAASKVPAFKPGKALKDAV 89
[82][TOP]
>UniRef100_Q1QVW4 Histone-like DNA-binding protein n=1 Tax=Chromohalobacter
salexigens DSM 3043 RepID=Q1QVW4_CHRSD
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 45/88 (51%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA + K A +A D+++ + D+L GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIEAIAASADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I+A+K P FKA LKD+VN
Sbjct: 63 PQTGQTIEISAAKVPTFKAGKALKDSVN 90
[83][TOP]
>UniRef100_Q1ICA5 DNA-binding protein HU-beta n=1 Tax=Pseudomonas entomophila L48
RepID=Q1ICA5_PSEE4
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERA R GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA GLKDAVN
Sbjct: 63 PQTGKAIKIAAAKVPGFKAGKGLKDAVN 90
[84][TOP]
>UniRef100_B4EU56 DNA-binding protein HU-beta n=1 Tax=Proteus mirabilis HI4320
RepID=B4EU56_PROMH
Length = 91
Score = 97.1 bits (240), Expect = 6e-19
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++ IA +TK A + D+++ I ++L GD V +VGFGTF VR+RAAR GRN
Sbjct: 3 KTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA+K P F+A GLKDAVN
Sbjct: 63 PQTGKEIQIAAAKVPAFRAGKGLKDAVN 90
[85][TOP]
>UniRef100_B1Y0T8 Histone family protein DNA-binding protein n=1 Tax=Leptothrix
cholodnii SP-6 RepID=B1Y0T8_LEPCP
Length = 116
Score = 97.1 bits (240), Expect = 6e-19
Identities = 46/91 (50%), Positives = 66/91 (72%)
Frame = +2
Query: 119 TTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQ 298
T K++L+E IA + ++K AA+A ++LIGG++ L GD V++VGFGTF V +RAAR
Sbjct: 26 TVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85
Query: 299 GRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TGAV++I +SK P F+ LKD++N
Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116
[86][TOP]
>UniRef100_B1J678 Histone family protein DNA-binding protein n=1 Tax=Pseudomonas
putida W619 RepID=B1J678_PSEPW
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERA R GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA GLKDAVN
Sbjct: 63 PQTGKTIKIAAAKVPGFKAGKGLKDAVN 90
[87][TOP]
>UniRef100_C7HJ75 Histone family protein DNA-binding protein n=1 Tax=Clostridium
thermocellum DSM 2360 RepID=C7HJ75_CLOTM
Length = 91
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/88 (54%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ +IA++ GL+K + A ++ I +E+AL GD+V +VGFGTFEV+ RAAR+GRN
Sbjct: 3 KTELINSIASKSGLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAPVFKA GLKD VN
Sbjct: 63 PQTKEEITIPASKAPVFKAGKGLKDIVN 90
[88][TOP]
>UniRef100_C5V4T1 Histone family protein DNA-binding protein n=1 Tax=Gallionella
ferruginea ES-2 RepID=C5V4T1_9PROT
Length = 91
Score = 97.1 bits (240), Expect = 6e-19
Identities = 50/88 (56%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
+ +L++A+AT+ G TK VA + +LI I + L GD +++VGFGTFEVRERAAR GRN
Sbjct: 3 RKELIDALATKTGSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA L+IAASK P FK LK AVN
Sbjct: 63 PKTGAELKIAASKVPAFKPGATLKSAVN 90
[89][TOP]
>UniRef100_C0N7W9 DNA-binding protein HU n=1 Tax=Methylophaga thiooxidans DMS010
RepID=C0N7W9_9GAMM
Length = 95
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/93 (51%), Positives = 63/93 (67%)
Frame = +2
Query: 113 SNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAA 292
+ K +L++A+A ++K AA+A D + + AL GD+VT+VGFGTF VRERAA
Sbjct: 3 NQAVNKYELIDAVAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAA 62
Query: 293 RQGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
R GRNP TG ++IAA+K P FKA LKDAVN
Sbjct: 63 RTGRNPRTGEEIKIAAAKIPAFKAGKALKDAVN 95
[90][TOP]
>UniRef100_A7BW88 DNA-binding protein HU n=1 Tax=Beggiatoa sp. PS RepID=A7BW88_9GAMM
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 49/88 (55%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++A+A +TK A KA D++I I+DAL D VT++GFGTF VRERAAR GRN
Sbjct: 3 KSELIQAVAESAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARVGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG L I A+ PVFK LKDAVN
Sbjct: 63 PRTGERLDIKAANVPVFKPGKALKDAVN 90
[91][TOP]
>UniRef100_A4BE20 DNA-binding protein HU n=1 Tax=Reinekea blandensis MED297
RepID=A4BE20_9GAMM
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++A+A ++K A +A D+++ + +AL GD+V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAVAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA+K P FKA LKDAVN
Sbjct: 63 PQTGEPIQIAAAKVPGFKAGKALKDAVN 90
[92][TOP]
>UniRef100_A0YBY0 DNA-binding protein HU n=1 Tax=marine gamma proteobacterium
HTCC2143 RepID=A0YBY0_9GAMM
Length = 90
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA L K A +A D+++ + AL +GD+V +VGFGTF V++RAAR GRN
Sbjct: 3 KSELIEAIAASADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QI A+K P FKA LKDAVN
Sbjct: 63 PQTGAEIQIKAAKVPGFKAGKALKDAVN 90
[93][TOP]
>UniRef100_Q2RMB5 Bacterial nucleoid protein Hbs n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RMB5_MOOTA
Length = 91
Score = 96.7 bits (239), Expect = 7e-19
Identities = 47/87 (54%), Positives = 64/87 (73%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ ++A + LTK A K ++++ IE+AL G++V +VGFGTFE++ERAAR GRN
Sbjct: 3 KMDLIASVAEKTDLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARVGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAA++APVFKA LKDAV
Sbjct: 63 PRTGEEIQIAATRAPVFKAGKALKDAV 89
[94][TOP]
>UniRef100_C8Q3S4 Histone family protein DNA-binding protein n=1 Tax=Pantoea sp.
At-9b RepID=C8Q3S4_9ENTR
Length = 93
Score = 96.7 bits (239), Expect = 7e-19
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K++L++ IA + ++K A + D+ +G + DAL GD V +VGFGTF VRERAAR
Sbjct: 2 NRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAAR 61
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG + I A K P F+A LKDAVN
Sbjct: 62 TGRNPQTGKEITIPAGKVPGFRAGKALKDAVN 93
[95][TOP]
>UniRef100_C4GGW6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147
RepID=C4GGW6_9NEIS
Length = 101
Score = 96.7 bits (239), Expect = 7e-19
Identities = 50/98 (51%), Positives = 66/98 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA + GLTK A KA D+ ++DAL +GD + +VGFGTF+V ERAARQG N
Sbjct: 3 KSELIEAIAQQAGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQGLN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGREPKPAAAK 421
P T ++I A++ P F A LKDAV +P AA K
Sbjct: 63 PRTKEAIKIPAARVPKFTAGKTLKDAVAASKPAKAAKK 100
[96][TOP]
>UniRef100_C0WTJ2 DNA-binding protein HU n=3 Tax=Lactobacillus RepID=C0WTJ2_LACBU
Length = 91
Score = 96.7 bits (239), Expect = 7e-19
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +ATE GLTK A A D++ I+ +L G++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[97][TOP]
>UniRef100_Q60BE5 DNA-binding protein HU-beta n=1 Tax=Methylococcus capsulatus
RepID=Q60BE5_METCA
Length = 90
Score = 96.3 bits (238), Expect = 9e-19
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+EAIA LTK A +A D++I I DAL GD V++VGFG+F V+ERA RQGRN
Sbjct: 3 KAELIEAIADAANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P FK LKDAVN
Sbjct: 63 PQTGDSITIKAAKIPSFKCGKALKDAVN 90
[98][TOP]
>UniRef100_Q3IF56 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Pseudoalteromonas
haloplanktis TAC125 RepID=Q3IF56_PSEHT
Length = 90
Score = 96.3 bits (238), Expect = 9e-19
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA + ++K A +A DS I + AL GD V +VGFGTF VR+RAAR GRN
Sbjct: 3 KSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA+ P FKA LKDAVN
Sbjct: 63 PQTGETIQIAAATIPAFKAGKALKDAVN 90
[99][TOP]
>UniRef100_Q03F89 Bacterial nucleoid protein Hbs n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F89_PEDPA
Length = 91
Score = 96.3 bits (238), Expect = 9e-19
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV+ +A GLTK A A D++ I+D L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDAV
Sbjct: 64 PQTGKEIEIAASKVPAFKPGKALKDAV 90
[100][TOP]
>UniRef100_C6XBM4 Histone family protein DNA-binding protein n=1 Tax=Methylovorus sp.
SIP3-4 RepID=C6XBM4_METSD
Length = 90
Score = 96.3 bits (238), Expect = 9e-19
Identities = 47/88 (53%), Positives = 59/88 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+E IAT G++K A K D+ + AL GD VT++GFGTF V ERAAR GRN
Sbjct: 3 KQELIEEIATSAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA KAP F+A LKDA+N
Sbjct: 63 PQTGKEIKIAARKAPAFRAGKALKDALN 90
[101][TOP]
>UniRef100_C4LDB6 Histone family protein DNA-binding protein n=1 Tax=Tolumonas
auensis DSM 9187 RepID=C4LDB6_TOLAT
Length = 90
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV+ I+ ++K A +A D+ I + +AL +GD+V++VGFGTF VRERA+R GRN
Sbjct: 3 KSQLVDKISESADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA K P FKA LKD+VN
Sbjct: 63 PQTGATIEIAACKQPAFKAGKALKDSVN 90
[102][TOP]
>UniRef100_B1MYB6 Bacterial nucleoid DNA-binding protein n=1 Tax=Leuconostoc citreum
KM20 RepID=B1MYB6_LEUCK
Length = 91
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/87 (52%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+++A GLTK A + D++ IE+AL NG++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LK+AV
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90
[103][TOP]
>UniRef100_A5EWF2 DNA-binding protein Hu n=1 Tax=Dichelobacter nodosus VCS1703A
RepID=A5EWF2_DICNV
Length = 104
Score = 96.3 bits (238), Expect = 9e-19
Identities = 49/98 (50%), Positives = 63/98 (64%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+ IA G+TK A KA D+ + ++L+ GD+VT++GFGTFE RER+AR G N
Sbjct: 3 KTELVDVIAEAAGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARIGHN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGREPKPAAAK 421
P T + IAAS P FKA LKDAVN + PA K
Sbjct: 63 PRTREKINIAASTTPAFKAGKKLKDAVNQPKADPAKKK 100
[104][TOP]
>UniRef100_C6M339 DNA-binding protein HU-beta n=1 Tax=Neisseria sicca ATCC 29256
RepID=C6M339_NEISI
Length = 89
Score = 96.3 bits (238), Expect = 9e-19
Identities = 49/87 (56%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA E G++K A KA D+ + +AL GD VT+VGFGTF V ERA RQGRN
Sbjct: 3 KSELIEAIAQEAGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG L IAA+K P F+A LKDA+
Sbjct: 63 PKTGEPLTIAAAKTPKFRAGKALKDAL 89
[105][TOP]
>UniRef100_B7RVD1 DNA-binding protein HU n=1 Tax=marine gamma proteobacterium
HTCC2148 RepID=B7RVD1_9GAMM
Length = 91
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++AIA L+K A +A D+++ + DAL GD+V++VGFGTF V+ R+AR GRN
Sbjct: 3 KTELIDAIAAAADLSKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I AS+ P FKA LKDAVN
Sbjct: 63 PQTGAAIEIKASEVPSFKAGKALKDAVN 90
[106][TOP]
>UniRef100_P08821 DNA-binding protein HU 1 n=6 Tax=Bacillus subtilis group
RepID=DBH1_BACSU
Length = 92
Score = 96.3 bits (238), Expect = 9e-19
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA DS+ I DAL NGD++ ++GFG FEVRER+AR+GRN
Sbjct: 3 KTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGR 397
P TG ++I ASK P FK LKDAV G+
Sbjct: 63 PQTGEEIEIPASKVPAFKPGKALKDAVAGK 92
[107][TOP]
>UniRef100_Q747Y3 DNA-binding protein HU n=1 Tax=Geobacter sulfurreducens
RepID=Q747Y3_GEOSL
Length = 94
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/91 (52%), Positives = 63/91 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV+A+A LTK A KA ++I + DAL GD+VT+VGFG+FEV R AR GRN
Sbjct: 3 KAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGRE 400
P TG ++IAA+K P F+ LKDAV G++
Sbjct: 63 PQTGKEIKIAAAKVPKFRPGKALKDAVAGKK 93
[108][TOP]
>UniRef100_Q2NV76 DNA-binding protein HU-beta n=1 Tax=Sodalis glossinidius str.
'morsitans' RepID=Q2NV76_SODGM
Length = 90
Score = 95.9 bits (237), Expect = 1e-18
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D++IG + ++L GD V +VGFGTF VRER+AR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P F+A GLKDAVN
Sbjct: 63 PQTGKEITIAAAKVPGFRAGKGLKDAVN 90
[109][TOP]
>UniRef100_Q12LA4 Histone-like DNA-binding protein n=1 Tax=Shewanella denitrificans
OS217 RepID=Q12LA4_SHEDO
Length = 90
Score = 95.9 bits (237), Expect = 1e-18
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + + L +GD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKSLKDAVN 90
[110][TOP]
>UniRef100_Q07ZY1 Histone family protein DNA-binding protein n=1 Tax=Shewanella
frigidimarina NCIMB 400 RepID=Q07ZY1_SHEFN
Length = 91
Score = 95.9 bits (237), Expect = 1e-18
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + + L +GD++++VGFGTFEVR+RA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGKEIKIAAANIPAFKAGKALKDAVN 90
[111][TOP]
>UniRef100_C5BTX9 DNA-binding protein HU-beta n=1 Tax=Teredinibacter turnerae T7901
RepID=C5BTX9_TERTT
Length = 90
Score = 95.9 bits (237), Expect = 1e-18
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LVEAIA ++K A +A D++ I +AL GD+V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELVEAIAASADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGDPIEIAAAKIPSFKAGKALKDAVN 90
[112][TOP]
>UniRef100_A1U1Q0 Bacterial nucleoid protein HU beta subunit n=1 Tax=Marinobacter
aquaeolei VT8 RepID=A1U1Q0_MARAV
Length = 90
Score = 95.9 bits (237), Expect = 1e-18
Identities = 47/87 (54%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA ++K A +A D++ I AL GD+VT++GFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FKA LKDAV
Sbjct: 63 PQTGAEIKIPASKVPGFKAGKALKDAV 89
[113][TOP]
>UniRef100_C3HBH4 DNA-binding protein HU 1 n=2 Tax=Bacillus thuringiensis
RepID=C3HBH4_BACTU
Length = 93
Score = 95.9 bits (237), Expect = 1e-18
Identities = 50/87 (57%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +L+ I +AL NGD+V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[114][TOP]
>UniRef100_B2GC36 DNA-binding protein n=3 Tax=Lactobacillus fermentum
RepID=B2GC36_LACF3
Length = 91
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/87 (55%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +AT GLTK A A D++ I+ +L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELVTNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[115][TOP]
>UniRef100_A5KX48 DNA-binding protein HU-beta n=1 Tax=Vibrionales bacterium SWAT-3
RepID=A5KX48_9GAMM
Length = 91
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LVE IAT ++K+ A A ++L+ GI L NGD V I+GFG+F+V RAAR GRN
Sbjct: 3 KSQLVEHIATSADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAASK P FKA LK+A N
Sbjct: 63 PRTGEEIQIAASKTPAFKAGKALKEACN 90
[116][TOP]
>UniRef100_Q7N0L6 DNA-binding protein HU-beta, NS1 (HU-1) n=1 Tax=Photorhabdus
luminescens subsp. laumondii RepID=Q7N0L6_PHOLL
Length = 91
Score = 95.5 bits (236), Expect = 2e-18
Identities = 46/89 (51%), Positives = 62/89 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA + ++K A + D+ I + AL +GD V +VGFGTF VRER+AR GRN
Sbjct: 3 KSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNG 394
P TG L+IAA+K P F+ GLKDAVNG
Sbjct: 63 PQTGKELKIAAAKVPAFRPGKGLKDAVNG 91
[117][TOP]
>UniRef100_Q0AI99 Histone family protein DNA-binding protein n=1 Tax=Nitrosomonas
eutropha C91 RepID=Q0AI99_NITEC
Length = 90
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/88 (55%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA +TK A A D + I+DAL D VT+VGFGTF+V ERAAR GRN
Sbjct: 3 KSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I A+K P F A LKDAVN
Sbjct: 63 PRTGAEIKIKAAKVPKFTAGKALKDAVN 90
[118][TOP]
>UniRef100_A4CD20 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Pseudoalteromonas
tunicata D2 RepID=A4CD20_9GAMM
Length = 90
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A DS I + AL +GD V +VGFG+F VRERAAR GRN
Sbjct: 3 KSQLIDEIAAGADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA+ P FKA LKDAVN
Sbjct: 63 PQTGATIEIAAANIPSFKAGKALKDAVN 90
[119][TOP]
>UniRef100_Q3BWP8 Histone-like protein n=1 Tax=Xanthomonas campestris pv. vesicatoria
str. 85-10 RepID=Q3BWP8_XANC5
Length = 90
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++ +A ++K A++A D+++ I AL GD VT+VGFGTF+VRERA R GRN
Sbjct: 3 KTELIDGVAAAADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAASK P FKA LKDAVN
Sbjct: 63 PKTGDSIKIAASKNPAFKAGKALKDAVN 90
[120][TOP]
>UniRef100_Q2W5P8 Bacterial nucleoid DNA-binding protein n=1 Tax=Magnetospirillum
magneticum AMB-1 RepID=Q2W5P8_MAGSA
Length = 117
Score = 95.1 bits (235), Expect = 2e-18
Identities = 52/106 (49%), Positives = 63/106 (59%)
Frame = +2
Query: 77 VVRAQAGAEKSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIV 256
VV G + S K LV +A GL+K A D+ I AL GD V +V
Sbjct: 12 VVSFSIGHDNSIGGLMNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLV 71
Query: 257 GFGTFEVRERAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAVNG 394
GFG+F V +RAA++GRNP TGA ++IAASKAP F A GLKDAVNG
Sbjct: 72 GFGSFSVTQRAAKEGRNPRTGATIKIAASKAPKFTAGKGLKDAVNG 117
[121][TOP]
>UniRef100_Q03SA0 Bacterial nucleoid protein Hbs n=1 Tax=Lactobacillus brevis ATCC
367 RepID=Q03SA0_LACBA
Length = 91
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +AT GLTK A A D++ ++ L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAQLVSDVATATGLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[122][TOP]
>UniRef100_A4J0R2 Bacterial nucleoid protein Hbs n=1 Tax=Desulfotomaculum reducens
MI-1 RepID=A4J0R2_DESRM
Length = 95
Score = 95.1 bits (235), Expect = 2e-18
Identities = 46/87 (52%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+ A+A + L+K A KA +++G IE+AL GD++ +VGFGTFE + R AR+GRN
Sbjct: 3 KAELISAVAEKTELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI A++ PVFKA LKDAV
Sbjct: 63 PQTGDTIQIPATRVPVFKAGKVLKDAV 89
[123][TOP]
>UniRef100_A5W632 Bacterial nucleoid protein HU beta subunit n=3 Tax=Pseudomonas
putida RepID=A5W632_PSEP1
Length = 90
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERA R GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I A+K P FKA GLKDAVN
Sbjct: 63 PQTGKAIKIEAAKVPGFKAGKGLKDAVN 90
[124][TOP]
>UniRef100_C9XXA5 DNA-binding protein HU-beta n=1 Tax=Cronobacter turicensis
RepID=C9XXA5_9ENTR
Length = 113
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/96 (48%), Positives = 63/96 (65%)
Frame = +2
Query: 104 KSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRE 283
K K++L++ IA ++K A +A D+LI + ++L +GD V +VGFGTF VRE
Sbjct: 18 KERKRRVNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRE 77
Query: 284 RAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
RAAR GRNP TG + IAA+K P F+A LKDAVN
Sbjct: 78 RAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN 113
[125][TOP]
>UniRef100_C2ESD8 DNA-binding protein HU n=1 Tax=Lactobacillus vaginalis ATCC 49540
RepID=C2ESD8_9LACO
Length = 91
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/87 (54%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +AT GLTK A A D++ I+ +L G++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[126][TOP]
>UniRef100_C1PEZ1 Histone family protein DNA-binding protein n=1 Tax=Bacillus
coagulans 36D1 RepID=C1PEZ1_BACCO
Length = 90
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A L+K KA D++ I++AL NGD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + IAASK P FK LKDAV
Sbjct: 63 PQTGEEIDIAASKVPAFKPGKALKDAV 89
[127][TOP]
>UniRef100_B8KA27 DNA-binding protein HU-beta n=1 Tax=Vibrio parahaemolyticus 16
RepID=B8KA27_VIBPA
Length = 90
Score = 95.1 bits (235), Expect = 2e-18
Identities = 49/88 (55%), Positives = 59/88 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVE IA L+K A +A D+LI + D L +GD+V +VGFGTF VR RAAR GRN
Sbjct: 3 KTQLVEKIAENADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIA +K P FKA LKDA N
Sbjct: 63 PKTGEEIQIAEAKVPSFKAGKALKDACN 90
[128][TOP]
>UniRef100_A6FE41 DNA-binding protein, HU family n=1 Tax=Moritella sp. PE36
RepID=A6FE41_9GAMM
Length = 91
Score = 95.1 bits (235), Expect = 2e-18
Identities = 45/87 (51%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L++ +A + ++K A +A D++I + + L+ + VT+VGFGTF VR+RAAR GRN
Sbjct: 3 KAQLIDCVAAKADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA +QIAASK P FKA LKDA+
Sbjct: 63 PQTGAEIQIAASKLPAFKAGKLLKDAL 89
[129][TOP]
>UniRef100_A4C492 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Pseudoalteromonas
tunicata D2 RepID=A4C492_9GAMM
Length = 91
Score = 95.1 bits (235), Expect = 2e-18
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LVE IAT+ ++K A++A D+ G + ++L G+ V +VGFGTF V+ RAAR GRN
Sbjct: 3 KAQLVEKIATDAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI+A+ P FKA GLKD+VN
Sbjct: 63 PQTGEEIQISAANIPSFKAGKGLKDSVN 90
[130][TOP]
>UniRef100_P0A3H2 DNA-binding protein HU n=7 Tax=Bacillaceae RepID=DBH_BACCA
Length = 90
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/87 (54%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A GL+K A KA D++ I +AL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 63 PQTGEEMEIPASKVPAFKPGKALKDAV 89
[131][TOP]
>UniRef100_Q7NUZ3 DNA-binding protein hu-beta n=1 Tax=Chromobacterium violaceum
RepID=Q7NUZ3_CHRVO
Length = 89
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA E ++K AAKA D ++ + AL GD VT+VGFGTF V ERA R GRN
Sbjct: 3 KSELIDAIAAEADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I A+++P F+A LKDA+
Sbjct: 63 PKTGATIKIPAARSPKFRAGKALKDAL 89
[132][TOP]
>UniRef100_Q65I20 Hbs n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65I20_BACLD
Length = 92
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/90 (52%), Positives = 62/90 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA DS+ I DAL NG+++ ++GFG FEVRER+AR+GRN
Sbjct: 3 KTELINAVAEASELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGR 397
P TG ++I ASK P FK LKDAV G+
Sbjct: 63 PQTGEEIEIPASKVPAFKPGKALKDAVAGK 92
[133][TOP]
>UniRef100_B5EQ32 Histone family protein DNA-binding protein n=2
Tax=Acidithiobacillus ferrooxidans RepID=B5EQ32_ACIF5
Length = 90
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/88 (53%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA E G+T+ A D+L+ + DAL GD+VT+VGFG+F V R AR+GRN
Sbjct: 3 KSELIEKIAEEAGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P+TGA + IAAS+ P FKA L+DAVN
Sbjct: 63 PATGAEIMIAASRTPKFKAGKALRDAVN 90
[134][TOP]
>UniRef100_B2SMI0 DNA-binding protein HU n=5 Tax=Xanthomonas RepID=B2SMI0_XANOP
Length = 90
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++ +A ++K A +A D+++ I AL GD VT+VGFGTF+VRERA R GRN
Sbjct: 3 KTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAASK P FKA LKDAVN
Sbjct: 63 PKTGDSIKIAASKNPAFKAGKALKDAVN 90
[135][TOP]
>UniRef100_A5D641 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum
thermopropionicum SI RepID=A5D641_PELTS
Length = 91
Score = 94.7 bits (234), Expect = 3e-18
Identities = 46/87 (52%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+ +A + LTK A KA + + + +AL GD+V +VGFGTFE+RERAAR+GRN
Sbjct: 3 KAELISNVAEKTELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + IAA++ PVFKA L+DAV
Sbjct: 63 PQTGEEINIAAARVPVFKAGKALRDAV 89
[136][TOP]
>UniRef100_A4XCD1 Histone family protein DNA-binding protein n=1 Tax=Salinispora
tropica CNB-440 RepID=A4XCD1_SALTO
Length = 91
Score = 94.7 bits (234), Expect = 3e-18
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K LVE +A + GLTK A A D+++ I DAL +G++V I GFGTFEV++R AR GRN
Sbjct: 3 KRTLVETVAAKAGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA KAP FK + LK+ V+
Sbjct: 63 PRTGETMEIAARKAPGFKPATALKNEVS 90
[137][TOP]
>UniRef100_Q1ZRN8 Putative bacterial nucleoid DNA-binding protein n=2
Tax=Photobacterium RepID=Q1ZRN8_PHOAS
Length = 90
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+ IA ++K A +A D+ I + D L +G++V +VGFGTF VRERAAR GRN
Sbjct: 3 KTQLVDKIAESADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA +QIAA+K P FK LKD+VN
Sbjct: 63 PQTGAEIQIAAAKVPGFKPGKALKDSVN 90
[138][TOP]
>UniRef100_C6PAA0 Histone family protein DNA-binding protein n=1
Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571
RepID=C6PAA0_CLOTS
Length = 91
Score = 94.7 bits (234), Expect = 3e-18
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA LV IA + LTK A KA ++ + +++AL GD+V +VGFGTFEVRERA R+GRN
Sbjct: 3 KADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T + I ASKAPVFKA LKD VN
Sbjct: 63 PQTKEEITIPASKAPVFKAGKALKDLVN 90
[139][TOP]
>UniRef100_C2E5R2 DNA-binding protein HU n=2 Tax=Lactobacillus johnsonii
RepID=C2E5R2_LACJO
Length = 91
Score = 94.7 bits (234), Expect = 3e-18
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A A D++ I++ L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVSEVAAKTDLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKDAV 90
[140][TOP]
>UniRef100_Q043T9 Bacterial nucleoid protein Hbs n=3 Tax=Lactobacillus gasseri
RepID=Q043T9_LACGA
Length = 91
Score = 94.7 bits (234), Expect = 3e-18
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A A D++ I++ L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVSEVAAKTDLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKDAV 90
[141][TOP]
>UniRef100_B0MPG4 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
15702 RepID=B0MPG4_9FIRM
Length = 105
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A KA +L+ I + L G+++ +VGFGTFEVRERAAR+G N
Sbjct: 17 KAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREGVN 76
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FKA LKDAV
Sbjct: 77 PRTGDKIKIAASKVPAFKAGSALKDAV 103
[142][TOP]
>UniRef100_A3YDM4 DNA-binding protein HU-beta n=1 Tax=Marinomonas sp. MED121
RepID=A3YDM4_9GAMM
Length = 90
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA L+K A A D+ + I AL GD+VT+VGFGTF V++RAAR GRN
Sbjct: 3 KSELIDAIAASADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P FKA GLKD+VN
Sbjct: 63 PQTGEEIAIKAAKVPGFKAGKGLKDSVN 90
[143][TOP]
>UniRef100_P05384 DNA-binding protein HU-beta n=6 Tax=Pseudomonas aeruginosa
RepID=DBHB_PSEAE
Length = 90
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGKPIKIAAAKIPGFKAGKALKDAVN 90
[144][TOP]
>UniRef100_UPI00018451CB hypothetical protein PROVRUST_00320 n=1 Tax=Providencia rustigianii
DSM 4541 RepID=UPI00018451CB
Length = 96
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/88 (50%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E +A+E ++K A + D+ + + +L GD VT+VGFGTF VR+RAAR GRN
Sbjct: 8 KSQLIEKVASEANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIGRN 67
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P F+A GLKDAVN
Sbjct: 68 PQTGKEIKIAAATVPAFRAGKGLKDAVN 95
[145][TOP]
>UniRef100_UPI00016A89CA Putative DNA-binding protein HU-alpha, HupA n=1 Tax=Burkholderia
oklahomensis C6786 RepID=UPI00016A89CA
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+E IA + L+K AA+A D+L+GG+ + L G VT+VGFGTFEV +RAAR GR+
Sbjct: 3 KTELIEHIARQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARGGRD 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I A+ P F+A LKDA+N
Sbjct: 63 PRTGAAIEIRAANVPKFRAGKALKDALN 90
[146][TOP]
>UniRef100_UPI00016A6354 Putative DNA-binding protein HU-alpha, HupA n=1 Tax=Burkholderia
oklahomensis EO147 RepID=UPI00016A6354
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+E IA + L+K AA+A D+L+GG+ + L G VT+VGFGTFEV +RAAR GR+
Sbjct: 3 KTELIEHIARQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARGGRD 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I A+ P F+A LKDA+N
Sbjct: 63 PRTGAAIEIRAANVPKFRAGKALKDALN 90
[147][TOP]
>UniRef100_UPI0000E87B77 Bacterial nucleoid DNA-binding protein n=1 Tax=Methylophilales
bacterium HTCC2181 RepID=UPI0000E87B77
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+EA+A+ G TK A +A D+ + + AL GD VT++GFGTF+V +RAAR GRN
Sbjct: 3 KGELIEAVASATGSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA L+IAA P FKA LK AVN
Sbjct: 63 PQTGAELKIAARTVPSFKAGAALKAAVN 90
[148][TOP]
>UniRef100_C6WVR9 Histone family protein DNA-binding protein n=1 Tax=Methylotenera
mobilis JLW8 RepID=C6WVR9_METML
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV +A E G+T+ + D++I + +AL GD V +VGFGTF+V ++AAR GRN
Sbjct: 3 KSELVAKVAAEAGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
PSTGA +QIAA APVFKA LKD VN
Sbjct: 63 PSTGATIQIAARNAPVFKAGKTLKDKVN 90
[149][TOP]
>UniRef100_B5FC01 DNA-binding protein HU-beta n=1 Tax=Vibrio fischeri MJ11
RepID=B5FC01_VIBFM
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV+ IA ++K A +A D+L+ + + L +GD+VT+VGFG+F VRERAAR GRN
Sbjct: 3 KSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I+A+K P FKA LKDA N
Sbjct: 63 PKTGEAIEISAAKVPAFKAGKALKDACN 90
[150][TOP]
>UniRef100_B1I182 Histone family protein DNA-binding protein n=1 Tax=Candidatus
Desulforudis audaxviator MP104C RepID=B1I182_DESAP
Length = 91
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/87 (52%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+ ++A + LTK A KA +++ I +AL GD+V +VGFGTFE RERAAR+GRN
Sbjct: 3 KAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + IAA+K PVFKA L+++V
Sbjct: 63 PQTGEEIDIAATKVPVFKAGKELRESV 89
[151][TOP]
>UniRef100_A7MFI5 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC
BAA-894 RepID=A7MFI5_ENTS8
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D+LI + ++L +GD V +VGFGTF VRERAAR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P F+A LKDAVN
Sbjct: 63 PQTGKEITIAAAKVPGFRAGKALKDAVN 90
[152][TOP]
>UniRef100_A4XTZ8 Bacterial nucleoid protein HU beta subunit n=1 Tax=Pseudomonas
mendocina ymp RepID=A4XTZ8_PSEMY
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P FKA LKDAVN
Sbjct: 63 PQTGKPISIAAAKIPGFKAGKALKDAVN 90
[153][TOP]
>UniRef100_A4VL81 DNA-binding protein HU n=1 Tax=Pseudomonas stutzeri A1501
RepID=A4VL81_PSEU5
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P FKA LKDAVN
Sbjct: 63 PQTGKPINIAAAKIPGFKAGKALKDAVN 90
[154][TOP]
>UniRef100_A0RBW4 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis str. Al Hakam
RepID=A0RBW4_BACAH
Length = 117
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/91 (52%), Positives = 60/91 (65%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K L+ A+A L+K A KA D++ I +AL GD+V ++GFG FEVRERAAR
Sbjct: 26 NGMNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAAR 85
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+GRNP TG ++IAASK P FK LKDAV
Sbjct: 86 KGRNPQTGEEIEIAASKVPAFKPGKALKDAV 116
[155][TOP]
>UniRef100_Q6SHE6 DNA-binding protein HU n=1 Tax=uncultured marine bacterium 439
RepID=Q6SHE6_9BACT
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 50/88 (56%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ LV AIA GLTK AA+A + G I AL +GD+V+I GFG+F VR RAAR GRN
Sbjct: 3 KSDLVAAIADGSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA + I+ASK P FKA LK++VN
Sbjct: 63 PQTGATIHISASKVPAFKAGKLLKESVN 90
[156][TOP]
>UniRef100_Q81FQ9 DNA-binding protein HU n=2 Tax=Bacillus cereus group
RepID=Q81FQ9_BACCR
Length = 114
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/91 (52%), Positives = 60/91 (65%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K L+ A+A L+K A KA D++ I +AL GD+V ++GFG FEVRERAAR
Sbjct: 23 NGMNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAAR 82
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+GRNP TG ++IAASK P FK LKDAV
Sbjct: 83 KGRNPQTGEEIEIAASKVPAFKPGKALKDAV 113
[157][TOP]
>UniRef100_C5V5L8 Histone family protein DNA-binding protein n=1 Tax=Gallionella
ferruginea ES-2 RepID=C5V5L8_9PROT
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ LV+AIAT ++K A +A D + I+ AL NG+ V++VGFG F V ERA R GRN
Sbjct: 3 KSDLVDAIATSADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRVGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA + I A+K P F+A GLKDAVN
Sbjct: 63 PQTGAAITIKAAKVPKFRAGKGLKDAVN 90
[158][TOP]
>UniRef100_C4FTD5 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
RepID=C4FTD5_9FIRM
Length = 91
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LVE +A + LTK ++L I++ L G++V ++GFGTFEVRERAAR+GRN
Sbjct: 4 KAELVEKVAAKTNLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FKA LKDAV
Sbjct: 64 PQTGKEIKIAASKVPGFKAGKALKDAV 90
[159][TOP]
>UniRef100_C2WWG2 DNA-binding protein HU n=4 Tax=Bacillus cereus group
RepID=C2WWG2_BACCE
Length = 93
Score = 94.4 bits (233), Expect = 4e-18
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +L+ I +AL NG++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[160][TOP]
>UniRef100_C2NFC1 DNA-binding protein HU n=15 Tax=Bacillus cereus group
RepID=C2NFC1_BACCE
Length = 104
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/91 (52%), Positives = 60/91 (65%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
N K L+ A+A L+K A KA D++ I +AL GD+V ++GFG FEVRERAAR
Sbjct: 13 NGMNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAAR 72
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+GRNP TG ++IAASK P FK LKDAV
Sbjct: 73 KGRNPQTGEEIEIAASKVPAFKPGKALKDAV 103
[161][TOP]
>UniRef100_C6VQK1 DNA-binding protein II n=3 Tax=Lactobacillus plantarum
RepID=C6VQK1_LACPJ
Length = 91
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A LTK A A D++ I+D L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELVNNVAAATNLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGDEIQIPASKVPAFKPGKALKDAV 90
[162][TOP]
>UniRef100_C2EMX0 DNA-binding protein HU n=1 Tax=Lactobacillus ultunensis DSM 16047
RepID=C2EMX0_9LACO
Length = 91
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/87 (52%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A++ LTK A A D++ G I+D L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI AS+ P FK LK+AV
Sbjct: 64 PQTGDEIQIPASEVPAFKPGKALKEAV 90
[163][TOP]
>UniRef100_B2Q707 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
25827 RepID=B2Q707_PROST
Length = 96
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA+E ++K A + D+ + + +L GD V +VGFGTF VRERAAR GRN
Sbjct: 8 KSQLIDQIASEANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTGRN 67
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P F+ GLKDAVN
Sbjct: 68 PQTGKEIKIAAAKVPAFRPGKGLKDAVN 95
[164][TOP]
>UniRef100_B1C2Z2 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM
1552 RepID=B1C2Z2_9FIRM
Length = 91
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVEAIA+ +TK K S I + DAL+ G++V++ GFG FE+RER R GRN
Sbjct: 3 KTELVEAIASNTNMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I+ASKAP FKAS LK+AVN
Sbjct: 63 PRTGETMTISASKAPAFKASSALKNAVN 90
[165][TOP]
>UniRef100_A3XII9 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=Leeuwenhoekiella
blandensis MED217 RepID=A3XII9_9FLAO
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ L++A+A + G+TK A KA +S +G IE +L GDRV++VGFG++ V +RAAR+GRN
Sbjct: 3 KSDLIDAMAEDAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA FKA L DAVN
Sbjct: 63 PQTGKTIQIAAKNVVKFKAGSDLSDAVN 90
[166][TOP]
>UniRef100_A3JKN8 Bacterial nucleoid DNA-binding protein n=1 Tax=Marinobacter sp.
ELB17 RepID=A3JKN8_9ALTE
Length = 90
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA ++K A +A D++ I AL D+VT++GFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAESADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA +QI ASK P FKA LKDAV
Sbjct: 63 PQTGAEIQIKASKVPGFKAGKALKDAV 89
[167][TOP]
>UniRef100_UPI000197C506 hypothetical protein PROVRETT_04480 n=1 Tax=Providencia rettgeri
DSM 1131 RepID=UPI000197C506
Length = 96
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L++ IA++ ++K A + D+ + + +L GD V +VGFGTF VRERAAR GRN
Sbjct: 8 KAQLIDQIASDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTGRN 67
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P F+ GLKDAVN
Sbjct: 68 PQTGKEIKIAAAKVPAFRPGKGLKDAVN 95
[168][TOP]
>UniRef100_Q15R49 Histone-like DNA-binding protein n=1 Tax=Pseudoalteromonas
atlantica T6c RepID=Q15R49_PSEA6
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K + +A D+L I AL GD+V +VGFGTF VRERAAR GRN
Sbjct: 3 KSQLIDQIAASADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARSGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI+A+K P FKA LKDA N
Sbjct: 63 PQTGETIQISAAKVPSFKAGKALKDACN 90
[169][TOP]
>UniRef100_C5D3E9 Histone family protein DNA-binding protein n=1 Tax=Geobacillus sp.
WCH70 RepID=C5D3E9_GEOSW
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A GL+K A KA D++ I +AL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 63 PQTGEEMEIPASKVPAFKPGKALKDAV 89
[170][TOP]
>UniRef100_B0KJG9 Histone family protein DNA-binding protein n=1 Tax=Pseudomonas
putida GB-1 RepID=B0KJG9_PSEPG
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V++RA R GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I A+K P FKA GLKDAVN
Sbjct: 63 PQTGKAIKIEAAKVPGFKAGKGLKDAVN 90
[171][TOP]
>UniRef100_A9VUT2 Histone family protein DNA-binding protein n=1 Tax=Bacillus
weihenstephanensis KBAB4 RepID=A9VUT2_BACWK
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 49/87 (56%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +L+ I +AL NGD+V +GFGTFEVRER+AR GRN
Sbjct: 3 KTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 63 PQTGEEMQIAASKAPAFKAGKELKEAV 89
[172][TOP]
>UniRef100_Q048V4 Bacterial nucleoid protein Hbs n=3 Tax=Lactobacillus delbrueckii
subsp. bulgaricus RepID=Q048V4_LACDB
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/87 (51%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV ++ + +K +A+ D+L IE+AL G++V ++GFGTFEVRERAAR+GRN
Sbjct: 3 KTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 63 PQTGAEIEIPASKVPAFKPGKALKDAV 89
[173][TOP]
>UniRef100_Q1ZH48 DNA-binding protein n=1 Tax=Psychromonas sp. CNPT3
RepID=Q1ZH48_9GAMM
Length = 91
Score = 94.0 bits (232), Expect = 5e-18
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++ IA ++K A++A D+ I + AL+ GD V+++GFG F V++RAAR GRN
Sbjct: 3 KGQLIDNIAESADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++I A+K P FKA LKDA+N
Sbjct: 63 PQTGAPIEIKAAKVPAFKAGKSLKDAIN 90
[174][TOP]
>UniRef100_C8ZYX6 DNA binding protein HU n=4 Tax=Enterococcus RepID=C8ZYX6_ENTGA
Length = 91
Score = 94.0 bits (232), Expect = 5e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+E +A LTK A A D++ I+DAL NG++V ++GFG FEVR RA R+GRN
Sbjct: 4 KAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 64 PQTGEEIKIPASKVPAFKPGKALKDAV 90
[175][TOP]
>UniRef100_C5NWY5 DNA-binding protein HU n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NWY5_9BACL
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/87 (50%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+ +A + GL K A A ++ + +E+ L G+++ I+GFG FEVRERAAR+GRN
Sbjct: 3 KSELISKVAEKSGLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P T V++IAASK P FKA LKDAV
Sbjct: 63 PQTNEVIEIAASKVPAFKAGKALKDAV 89
[176][TOP]
>UniRef100_C2XDK0 DNA-binding protein HU n=1 Tax=Bacillus cereus F65185
RepID=C2XDK0_BACCE
Length = 93
Score = 94.0 bits (232), Expect = 5e-18
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +L+ + +AL NG++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVVAEKAELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[177][TOP]
>UniRef100_B9ZM32 Histone family protein DNA-binding protein n=1 Tax=Thioalkalivibrio
sp. K90mix RepID=B9ZM32_9GAMM
Length = 90
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA E + K A + D+++ + D L GD+V++VGFGTF VRER AR GRN
Sbjct: 3 KSELIDAIAAEADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAASK P FKA LKD VN
Sbjct: 63 PRTGQSIQIAASKTPSFKAGKALKDRVN 90
[178][TOP]
>UniRef100_A9E6Q5 Fumarate hydratase n=1 Tax=Kordia algicida OT-1 RepID=A9E6Q5_9FLAO
Length = 101
Score = 94.0 bits (232), Expect = 5e-18
Identities = 46/93 (49%), Positives = 63/93 (67%)
Frame = +2
Query: 113 SNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAA 292
S K +L++A+A + G++K A K+ +S +G +E AL GDRV++VGFG++ V ERAA
Sbjct: 9 STIMNKTELIDAMAADAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAA 68
Query: 293 RQGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
R+GRNP TG +QIAA K FKA L AVN
Sbjct: 69 REGRNPQTGKTIQIAAKKVVKFKAGSDLGKAVN 101
[179][TOP]
>UniRef100_Q3AFK7 DNA-binding protein HU n=1 Tax=Carboxydothermus hydrogenoformans
Z-2901 RepID=Q3AFK7_CARHZ
Length = 89
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/87 (54%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV IA + +TK A KA ++++ IE+AL G++V +VGFGTFEVRERAAR+GRN
Sbjct: 3 KAELVSVIAEKAEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK PVFK LK+ +
Sbjct: 63 PQTGQEIEIPASKVPVFKPGKLLKEKI 89
[180][TOP]
>UniRef100_Q39YS6 Histone-like DNA-binding protein n=1 Tax=Geobacter metallireducens
GS-15 RepID=Q39YS6_GEOMG
Length = 94
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/91 (51%), Positives = 62/91 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV+A+A LTK A KA ++I + DAL GD+VT+VGFG+FEV R AR GRN
Sbjct: 3 KAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGRE 400
P TG ++IAA+K P F+ LKDAV ++
Sbjct: 63 PQTGKEIKIAAAKVPKFRPGKALKDAVAAKK 93
[181][TOP]
>UniRef100_Q2B616 Non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component n=1 Tax=Bacillus sp. NRRL
B-14911 RepID=Q2B616_9BACI
Length = 90
Score = 93.6 bits (231), Expect = 6e-18
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ A+A L+K A KA D++ I +AL NGD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELINAVAEAGELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDAV
Sbjct: 63 PQTGDEIEIAASKVPAFKPGKALKDAV 89
[182][TOP]
>UniRef100_C9RA18 Histone family protein DNA-binding protein n=1 Tax=Ammonifex
degensii KC4 RepID=C9RA18_9THEO
Length = 95
Score = 93.6 bits (231), Expect = 6e-18
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ LV +A + +TK A KA ++ I +AL GD+V +VGFGTFEVRERAAR+GRN
Sbjct: 3 KSDLVAQVAEKAEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TGA ++IAA K PVF+A LK AV+
Sbjct: 63 PQTGAEIEIAACKVPVFRAGKALKAAVS 90
[183][TOP]
>UniRef100_C9PEW2 DNA-binding protein HU-beta n=1 Tax=Vibrio furnissii CIP 102972
RepID=C9PEW2_VIBFU
Length = 90
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVE IA ++K A +A D+ I + D L +GD+V +VGFGTF VR RAAR GRN
Sbjct: 3 KTQLVEQIAANADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIA +K P FKA LKDA N
Sbjct: 63 PKTGEEIQIAEAKVPAFKAGKALKDACN 90
[184][TOP]
>UniRef100_C9P5S9 DNA-binding protein HU-beta n=1 Tax=Vibrio metschnikovii CIP 69.14
RepID=C9P5S9_VIBME
Length = 90
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVE IA ++K A +A D+ I + D L +GD+V +VGFGTF VR RAAR GRN
Sbjct: 3 KTQLVEKIAENADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIA +K P FKA LKDA N
Sbjct: 63 PKTGEEIQIAEAKVPAFKAGKALKDACN 90
[185][TOP]
>UniRef100_C7XU37 Integration host factor, alpha subunit n=1 Tax=Lactobacillus
coleohominis 101-4-CHN RepID=C7XU37_9LACO
Length = 91
Score = 93.6 bits (231), Expect = 6e-18
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A+ GLTK A A D++ I+ +L G++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KAELVSNVASATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[186][TOP]
>UniRef100_C3HSV2 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1 RepID=C3HSV2_BACTU
Length = 93
Score = 93.6 bits (231), Expect = 6e-18
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + IA + LT+ AA A +L+ I +AL NG++V I+GFGTFEVRE++AR GRN
Sbjct: 6 KTELTKVIAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[187][TOP]
>UniRef100_C3HBU2 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1 RepID=C3HBU2_BACTU
Length = 93
Score = 93.6 bits (231), Expect = 6e-18
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + IA + LT+ AA A +++ I +AL NG++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[188][TOP]
>UniRef100_C2M0P9 DNA-binding protein HU 1 n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0P9_STAHO
Length = 90
Score = 93.6 bits (231), Expect = 6e-18
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A + LTK A A D++ I+++L G++V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FKA LKDAV
Sbjct: 63 PQTGKEIEIPASKVPAFKAGKALKDAV 89
[189][TOP]
>UniRef100_C2E213 DNA-binding protein HU n=1 Tax=Lactobacillus jensenii JV-V16
RepID=C2E213_9LACO
Length = 91
Score = 93.6 bits (231), Expect = 6e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A A D++ I+D L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALKDAV 90
[190][TOP]
>UniRef100_B5UXB2 DNA-binding protein HU 1 n=1 Tax=Bacillus cereus AH1134
RepID=B5UXB2_BACCE
Length = 90
Score = 93.6 bits (231), Expect = 6e-18
Identities = 49/87 (56%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K KL + +A + LT+ AA A +L+ I +AL G++V I+GFGTFEVRER+AR GRN
Sbjct: 3 KTKLTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 63 PQTGEEMQIAASKAPAFKAGKELKEAV 89
[191][TOP]
>UniRef100_Q7MMG4 Bacterial nucleoid DNA-binding protein n=2 Tax=Vibrio vulnificus
RepID=Q7MMG4_VIBVY
Length = 97
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/91 (51%), Positives = 59/91 (64%)
Frame = +2
Query: 119 TTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQ 298
T K +LVE+IA ++K A +A D+ I + L +GD+V +VGFGTF VR RAAR
Sbjct: 7 TVNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 66
Query: 299 GRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
GRNP TG +QIA +K P FKA LKDA N
Sbjct: 67 GRNPKTGEEIQIAEAKVPSFKAGKALKDACN 97
[192][TOP]
>UniRef100_Q4L6H8 DNA-binding protein II n=1 Tax=Staphylococcus haemolyticus JCSC1435
RepID=Q4L6H8_STAHJ
Length = 90
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A + LTK A A D++ I+ +L G++V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEQADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FKA LKDAV
Sbjct: 63 PQTGKEIEIPASKVPAFKAGKALKDAV 89
[193][TOP]
>UniRef100_Q04AY5 Bacterial nucleoid protein Hbs n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04AY5_LACDB
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK ++A D++ I++ L G++V ++GFGTFEVR+RAAR+GRN
Sbjct: 4 KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIEIPASKGPAFKPGKALKDAV 90
[194][TOP]
>UniRef100_B6ISY3 DNA-binding protein HupA n=1 Tax=Rhodospirillum centenum SW
RepID=B6ISY3_RHOCS
Length = 90
Score = 93.2 bits (230), Expect = 8e-18
Identities = 50/88 (56%), Positives = 58/88 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K LV A+A GL+K A KA D++ GI AL GD V +VGFGTF V ERAA +GRN
Sbjct: 3 KNDLVAAVAEAAGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASEGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I ASK P FKA GLKDA+N
Sbjct: 63 PRTGEKISIPASKQPKFKAGKGLKDALN 90
[195][TOP]
>UniRef100_A5G9T2 Histone family protein DNA-binding protein n=2 Tax=Geobacter
RepID=A5G9T2_GEOUR
Length = 94
Score = 93.2 bits (230), Expect = 8e-18
Identities = 48/91 (52%), Positives = 60/91 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LVEA+A LTK A KA + I + AL GDRVT+VGFG+FEV R AR GRN
Sbjct: 3 KAELVEAVAKSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGRE 400
P TG ++IAA+K P F+ LKDAV ++
Sbjct: 63 PQTGKEIKIAAAKVPKFRPGKALKDAVASKK 93
[196][TOP]
>UniRef100_Q1GAJ8 Histone-like DNA-binding protein n=2 Tax=Lactobacillus delbrueckii
subsp. bulgaricus RepID=Q1GAJ8_LACDA
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK ++A D++ I++ L G++V ++GFGTFEVR+RAAR+GRN
Sbjct: 4 KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++I ASK P FK LKDAV
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKDAV 90
[197][TOP]
>UniRef100_Q3D3R3 DNA-binding protein HU n=6 Tax=Streptococcus agalactiae
RepID=Q3D3R3_STRAG
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ + D L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++IAASK P FKA LKDAV
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALKDAV 90
[198][TOP]
>UniRef100_D0BJA9 DNA-binding protein HU n=1 Tax=Granulicatella elegans ATCC 700633
RepID=D0BJA9_9LACT
Length = 92
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/87 (54%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV+ +A + LTK + A D+L I++AL G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELVDRVAKKTQLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P +G +QI ASK P FKA LKDAV
Sbjct: 64 PQSGEEIQIEASKVPAFKAGKALKDAV 90
[199][TOP]
>UniRef100_A8YV36 DNA-binding protein II HB n=2 Tax=Lactobacillus helveticus
RepID=A8YV36_LACH4
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A++ LTK A A D++ G I+D L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I AS+ P FK LK+AV
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90
[200][TOP]
>UniRef100_C8P860 DNA-binding protein HU n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P860_9LACO
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A GLTK A A D++ I+ +L G++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KAELVSNVANATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QI ASK P FK LKDAV
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90
[201][TOP]
>UniRef100_C5RC58 DNA-binding protein HU n=1 Tax=Weissella paramesenteroides ATCC
33313 RepID=C5RC58_WEIPA
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV +AT GLTK A A D++ I++ L G++V ++GFG FEVR RAAR+GRN
Sbjct: 4 KQELVTDVATATGLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDA+
Sbjct: 64 PQTGEEIEIAASKIPAFKPGKALKDAI 90
[202][TOP]
>UniRef100_B9J6C3 Small DNA-binding protein (Bacterial histone-like family) n=2
Tax=Bacillus cereus group RepID=B9J6C3_BACCQ
Length = 92
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/90 (51%), Positives = 63/90 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ +A + LTK A+ A D+++ I+ AL NG+ V ++GFGTFEVRERAAR+GRN
Sbjct: 3 KSELIKQVAIQSELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGR 397
P TG L I A K P FKA LK+AV +
Sbjct: 63 PHTGEALTIPAGKTPAFKAGKALKEAVKAK 92
[203][TOP]
>UniRef100_C2N9Z1 DNA-binding protein HU n=1 Tax=Bacillus cereus ATCC 10876
RepID=C2N9Z1_BACCE
Length = 93
Score = 93.2 bits (230), Expect = 8e-18
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +++ I +AL NG++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVVAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[204][TOP]
>UniRef100_A7GN47 Histone family protein DNA-binding protein n=56 Tax=Bacillus
RepID=A7GN47_BACCN
Length = 90
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A L+K A KA D++ I +AL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IAASK P FK LKDAV
Sbjct: 63 PQTGEEIEIAASKVPAFKPGKALKDAV 89
[205][TOP]
>UniRef100_C2LR12 DNA-binding protein HU 1 n=1 Tax=Streptococcus salivarius SK126
RepID=C2LR12_STRSL
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ IE+ L G++V ++GFG FEVRERAARQGRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + IAASK P FKA LKDAV
Sbjct: 64 PQTGEAISIAASKVPAFKAGKALKDAV 90
[206][TOP]
>UniRef100_C2KYF3 DNA-binding protein HU n=1 Tax=Oribacterium sinus F0268
RepID=C2KYF3_9FIRM
Length = 90
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K LV A+A + L+K A A +++ I +AL GD+V ++GFGTF+V ERAAR+GRN
Sbjct: 3 KVDLVSAVAKQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAASKAP FKA LKD VN
Sbjct: 63 PRTGETMKIAASKAPRFKAGKALKDRVN 90
[207][TOP]
>UniRef100_C2HP62 DNA-binding protein HU n=2 Tax=Lactobacillus acidophilus
RepID=C2HP62_LACAC
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 61/87 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A++ LTK A A D++ G I+D L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I AS+ P FK LK+AV
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90
[208][TOP]
>UniRef100_A4VWX4 Nucleoid DNA-binding protein n=6 Tax=Streptococcus suis
RepID=A4VWX4_STRSY
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ G + D L G++V ++GFG FEVRER+AR GRN
Sbjct: 4 KQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++IAASK P FKA LKDAV
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALKDAV 90
[209][TOP]
>UniRef100_B6G0K3 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G0K3_9CLOT
Length = 92
Score = 93.2 bits (230), Expect = 8e-18
Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A A ++ + +E+AL++G++V +VGFGTFE R+RAARQGRN
Sbjct: 3 KAELVSKMAEKSELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQGRN 62
Query: 308 P-STGAVLQIAASKAPVFKASVGLKDAVN 391
P + V+ I ASKAPVFKA GLKD VN
Sbjct: 63 PRNPEEVISIPASKAPVFKAGKGLKDKVN 91
[210][TOP]
>UniRef100_A5VJK5 Bacterial nucleoid protein Hbs n=8 Tax=Lactobacillus reuteri
RepID=A5VJK5_LACRD
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +AT GLTK A A D++ I+ +L G++V ++GFG FEVR+RAAR+GRN
Sbjct: 4 KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + I ASK P FK LKDAV
Sbjct: 64 PQTGEEINIPASKVPAFKPGKALKDAV 90
[211][TOP]
>UniRef100_A4A349 Histone-like bacterial DNA-binding protein n=1 Tax=Congregibacter
litoralis KT71 RepID=A4A349_9GAMM
Length = 115
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K+ L++AIA+ + K A +A D+++ I D L GD+V++VGFGTF V+ RAAR GRN
Sbjct: 27 KSDLIDAIASAADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDGRN 86
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++I AS P FKA LKDAVN
Sbjct: 87 PQTGETIKIKASNVPGFKAGKALKDAVN 114
[212][TOP]
>UniRef100_A3URL8 DNA-binding protein HU-beta n=1 Tax=Vibrio splendidus 12B01
RepID=A3URL8_VIBSP
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LVE IAT ++KD A A ++L+ GI + L GD V I+GFG+F+V RAAR GRN
Sbjct: 3 KSQLVEHIATSADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI+ASK P FKA LK++ N
Sbjct: 63 PRTGEEIQISASKTPAFKAGKALKESCN 90
[213][TOP]
>UniRef100_A0Z281 DNA-binding protein HU-beta (NS1) (HU-1) n=1 Tax=marine gamma
proteobacterium HTCC2080 RepID=A0Z281_9GAMM
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 49/88 (55%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+AIA E L+K A +A D+ I I AL D V++VGFGTF V+ RAAR+GRN
Sbjct: 3 KNELVDAIAEEADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P +G +QI AS AP FKA LKDAVN
Sbjct: 63 PRSGETIQIKASNAPGFKAGKALKDAVN 90
[214][TOP]
>UniRef100_P96045 DNA-binding protein HU n=4 Tax=Streptococcus thermophilus
RepID=DBH_STRTR
Length = 91
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ IE+ L G++V ++GFG FEVRERAARQGRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + IAASK P FKA LKDAV
Sbjct: 64 PQTGETISIAASKVPAFKAGKALKDAV 90
[215][TOP]
>UniRef100_Q5HFV0 DNA-binding protein HU n=42 Tax=Staphylococcus RepID=DBH_STAAC
Length = 90
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A + LTK A A D++ I+++L G++V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + I ASK P FKA LKDAV
Sbjct: 63 PQTGKEIDIPASKVPAFKAGKALKDAV 89
[216][TOP]
>UniRef100_Q483H6 DNA-binding protein, HU family n=1 Tax=Colwellia psychrerythraea
34H RepID=Q483H6_COLP3
Length = 91
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/89 (51%), Positives = 61/89 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+ I+ +TK A +A DSLI + L +G V +VGFGT++V +RAAR GRN
Sbjct: 3 KSELIAKISEGADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNG 394
P TGA +QI+A+K P FKA LKDAVNG
Sbjct: 63 PQTGAEIQISAAKVPAFKAGKALKDAVNG 91
[217][TOP]
>UniRef100_C5WHV6 DNA-binding protein HU n=1 Tax=Streptococcus dysgalactiae subsp.
equisimilis GGS_124 RepID=C5WHV6_STRDG
Length = 91
Score = 92.8 bits (229), Expect = 1e-17
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ IE L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++IAASK P FKA LKDAV
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALKDAV 90
[218][TOP]
>UniRef100_C0ZCC6 DNA-binding protein HU n=1 Tax=Brevibacillus brevis NBRC 100599
RepID=C0ZCC6_BREBN
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ +A LTK A KA D+++ I DAL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELIAKVAETTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++IA+SK P FK LKD++
Sbjct: 63 PQTGEEIEIASSKVPAFKPGKQLKDSI 89
[219][TOP]
>UniRef100_B2VHU2 HopD, DNA-binding protein HU-beta (Synonym HupB) n=1 Tax=Erwinia
tasmaniensis RepID=B2VHU2_ERWT9
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IAT+ ++K A + D+ IG + ++L GD V +VGFGTF VRERA R GRN
Sbjct: 3 KSELIDKIATDADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA K P F+A LKDAVN
Sbjct: 63 PQTGKEITIAAGKVPGFRAGKTLKDAVN 90
[220][TOP]
>UniRef100_A8GAR2 Histone family protein DNA-binding protein n=1 Tax=Serratia
proteamaculans 568 RepID=A8GAR2_SERP5
Length = 101
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/88 (50%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D++I + D+L GD V +VGFG+F VRER+AR GRN
Sbjct: 14 KSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTGRN 73
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+K P F+A LKDAVN
Sbjct: 74 PQTGKEIKIAAAKVPAFRAGKALKDAVN 101
[221][TOP]
>UniRef100_A1SUX0 DNA-binding protein HU beta subunit n=1 Tax=Psychromonas ingrahamii
37 RepID=A1SUX0_PSYIN
Length = 91
Score = 92.8 bits (229), Expect = 1e-17
Identities = 43/88 (48%), Positives = 59/88 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L++ IA ++K A +A D+ I + AL+ GD V+++GFG F V+ERAAR GRN
Sbjct: 3 KGQLIDNIAESADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P T +QIAA+K P FKA LKDA+N
Sbjct: 63 PQTNEPIQIAAAKVPAFKAGKSLKDAIN 90
[222][TOP]
>UniRef100_A1S4X8 DNA-binding protein, HU family n=1 Tax=Shewanella amazonensis SB2B
RepID=A1S4X8_SHEAM
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/88 (50%), Positives = 62/88 (70%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA+ ++K A +A DS I + + L +G ++++VGFGTFEVRERA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P +G ++I A+K P FKA LKDAVN
Sbjct: 63 PQSGKEIKIPAAKIPAFKAGKALKDAVN 90
[223][TOP]
>UniRef100_C6P669 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans
lithotrophicus ES-1 RepID=C6P669_9GAMM
Length = 94
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/89 (53%), Positives = 62/89 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
+ +L++A+AT+ G +K A + +LI + L GD V +VGFGTFEVR+RAAR GRN
Sbjct: 3 RKELIDALATKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARNGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNG 394
PSTGA ++I ASK P FKA LK AVNG
Sbjct: 63 PSTGAAIKIKASKQPAFKAGATLKAAVNG 91
[224][TOP]
>UniRef100_C6NH00 Histone family protein DNA-binding protein n=3 Tax=Pectobacterium
RepID=C6NH00_9ENTR
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA + ++K A + D++IG + ++L GD V +VGFGTF VRERAAR GRN
Sbjct: 3 KSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P F+A LKDAVN
Sbjct: 63 PQTGKEISIPAAKVPGFRAGKTLKDAVN 90
[225][TOP]
>UniRef100_C4UU92 DNA-binding protein HU n=1 Tax=Yersinia rohdei ATCC 43380
RepID=C4UU92_YERRO
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D++I + ++L GD V +VGFGTF VRER+AR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P F+A GLKDAVN
Sbjct: 63 PQTGKEISIPAAKVPGFRAGKGLKDAVN 90
[226][TOP]
>UniRef100_C3AE90 DNA-binding protein HU n=1 Tax=Bacillus mycoides DSM 2048
RepID=C3AE90_BACMY
Length = 93
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +++ I +AL N D+V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKMVAEKAELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[227][TOP]
>UniRef100_B7VPH0 DNA-binding protein HU-beta n=2 Tax=Vibrio RepID=B7VPH0_VIBSL
Length = 91
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LVE IAT ++K+ A A ++L+ GI L NGD V+I+GFG+F+V RAAR GRN
Sbjct: 3 KSQLVEHIATSADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI+ASK P FKA LK+ N
Sbjct: 63 PRTGEEIQISASKTPAFKAGKALKETCN 90
[228][TOP]
>UniRef100_A7KV42 DNA-binding HU protein n=1 Tax=Bacillus phage 0305phi8-36
RepID=A7KV42_9CAUD
Length = 111
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/96 (47%), Positives = 64/96 (66%)
Frame = +2
Query: 101 EKSASNTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVR 280
EK + K +L+ +A ++K A KA D++ GGI +AL G++V ++GFGTFE R
Sbjct: 15 EKVRTLIMNKTELINHVAETAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETR 74
Query: 281 ERAARQGRNPSTGAVLQIAASKAPVFKASVGLKDAV 388
+RAAR+GRNP TG ++IAA+K P FKA LK AV
Sbjct: 75 DRAARKGRNPQTGEEIEIAATKVPAFKAGKELKTAV 110
[229][TOP]
>UniRef100_P0A1R9 DNA-binding protein HU-beta n=28 Tax=Salmonella enterica
RepID=DBHB_SALTI
Length = 90
Score = 92.8 bits (229), Expect = 1e-17
Identities = 45/88 (51%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+E IA ++K A +A D++I + ++L GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P F+A LKDAVN
Sbjct: 63 PQTGKEITIAAAKVPSFRAGKALKDAVN 90
[230][TOP]
>UniRef100_P64388 DNA-binding protein HU-beta n=7 Tax=Neisseria meningitidis
RepID=DBHB_NEIMA
Length = 89
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L+EAIA E ++K A KA D+ + AL GD VT+VGFGTF V ERA RQGRN
Sbjct: 3 KSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG L IAA+K P F+A LKDA+
Sbjct: 63 PKTGEPLTIAAAKTPKFRAGKALKDAL 89
[231][TOP]
>UniRef100_C1DHF3 Histone-like bacterial DNA-binding protein n=1 Tax=Azotobacter
vinelandii DJ RepID=C1DHF3_AZOVD
Length = 90
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/88 (53%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K VA +A D++I + AL GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P FKA LKDAVN
Sbjct: 63 PQTGKPINIEAAKIPGFKAGKALKDAVN 90
[232][TOP]
>UniRef100_B9DUT0 DNA-binding protein HU n=1 Tax=Streptococcus uberis 0140J
RepID=B9DUT0_STRU0
Length = 91
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ IE L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++IAASK P FKA LKDAV
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALKDAV 90
[233][TOP]
>UniRef100_A5WFX6 Histone family protein DNA-binding protein n=1 Tax=Psychrobacter
sp. PRwf-1 RepID=A5WFX6_PSYWF
Length = 90
Score = 92.4 bits (228), Expect = 1e-17
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++LV++IA + GL K AA A ++++ + +AL N D +++VGFGTF V+ER AR GRN
Sbjct: 3 KSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG LQI AS+ P FKA GLKD +N
Sbjct: 63 PKTGDELQIPASRVPHFKAGKGLKDRLN 90
[234][TOP]
>UniRef100_Q2BGG0 DNA-binding protein HU n=1 Tax=Neptuniibacter caesariensis
RepID=Q2BGG0_9GAMM
Length = 91
Score = 92.4 bits (228), Expect = 1e-17
Identities = 45/88 (51%), Positives = 59/88 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++AIA + K A +A D+ + + AL NGD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIDAIAASADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG ++IAA+ P FK LKDAVN
Sbjct: 63 PQTGKPIEIAAATLPTFKPGKALKDAVN 90
[235][TOP]
>UniRef100_C9NS12 DNA-binding protein HU-beta n=2 Tax=Vibrio RepID=C9NS12_9VIBR
Length = 90
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVE IA L+K A +A D+ I + D L +GD+V +VGFGTF VR RAAR GRN
Sbjct: 3 KTQLVEKIAENADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIA +K P FKA LKD+ N
Sbjct: 63 PKTGEEIQIAEAKVPAFKAGKALKDSCN 90
[236][TOP]
>UniRef100_C7QH20 Histone family protein DNA-binding protein n=1 Tax=Catenulispora
acidiphila DSM 44928 RepID=C7QH20_CATAD
Length = 232
Score = 92.4 bits (228), Expect = 1e-17
Identities = 48/106 (45%), Positives = 69/106 (65%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+EA+A ++ +K A A D+++ I ++ +G +V+I GFG+FE +R AR RN
Sbjct: 3 KAQLIEAVADKLAASKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPARTARN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGREPKPAAAKAAAANDAA 445
P TG +++ AS AP FKA G KD VNG + PAAAK+AA A
Sbjct: 63 PRTGESVKVKASSAPKFKAGQGFKDMVNGDKKAPAAAKSAAKKTTA 108
[237][TOP]
>UniRef100_C6QPJ2 Histone family protein DNA-binding protein n=1 Tax=Geobacillus sp.
Y4.1MC1 RepID=C6QPJ2_9BACI
Length = 90
Score = 92.4 bits (228), Expect = 1e-17
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ +A GL+K A KA D++ I +AL GD+V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTELINTVAEISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 63 PQTGEEMEIPASKVPAFKPGKALKDAV 89
[238][TOP]
>UniRef100_C2Q519 DNA-binding protein HU n=1 Tax=Bacillus cereus AH621
RepID=C2Q519_BACCE
Length = 93
Score = 92.4 bits (228), Expect = 1e-17
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L + +A + LT+ AA A +++ I +AL N ++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KAELTKMVAEKAELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[239][TOP]
>UniRef100_B9CS29 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1
Tax=Staphylococcus capitis SK14 RepID=B9CS29_STACP
Length = 90
Score = 92.4 bits (228), Expect = 1e-17
Identities = 45/87 (51%), Positives = 58/87 (66%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A + LTK A A D++ I+ +L G++V ++GFG FEVRERAAR+GRN
Sbjct: 3 KTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG + I ASK P FKA LKDAV
Sbjct: 63 PQTGKEIDIPASKVPAFKAGKALKDAV 89
[240][TOP]
>UniRef100_C3RPM3 Predicted protein n=2 Tax=Bacteria RepID=C3RPM3_9MOLU
Length = 91
Score = 92.4 bits (228), Expect = 1e-17
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LVEAIA+ +TK K + + + +AL+ GD+V++ GFG FEVRER R GRN
Sbjct: 3 KTELVEAIASSTEMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAASKAP FK+S LK+AVN
Sbjct: 63 PRTGETMTIAASKAPAFKSSSALKNAVN 90
[241][TOP]
>UniRef100_A0NT95 Histone-like DNA-binding protein n=1 Tax=Labrenzia aggregata IAM
12614 RepID=A0NT95_9RHOB
Length = 91
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/88 (53%), Positives = 57/88 (64%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ A+A + GLTK A +A D+ + L +GD V I+GFG F V ERAA +GRN
Sbjct: 3 KNDLIAAVAEKTGLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATEGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QI ASK P FKA GLKDAVN
Sbjct: 63 PRTGETIQIPASKTPKFKAGKGLKDAVN 90
[242][TOP]
>UniRef100_Q9XB22 DNA-binding protein HU n=1 Tax=Streptococcus downei RepID=DBH_STRDO
Length = 91
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K L+ +A LTK +A A D++ IE L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TGA ++IAASK P FKA LKDAV
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALKDAV 90
[243][TOP]
>UniRef100_A4W7B1 Bacterial nucleoid protein HU beta subunit n=1 Tax=Enterobacter sp.
638 RepID=A4W7B1_ENT38
Length = 90
Score = 92.0 bits (227), Expect = 2e-17
Identities = 45/88 (51%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D+LI + + L +GD V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + IAA+K P F+A LKDAVN
Sbjct: 63 PQTGKEITIAAAKVPGFRAGKALKDAVN 90
[244][TOP]
>UniRef100_Q1Z7Z9 Putative bacterial nucleoid DNA-binding protein n=1
Tax=Photobacterium profundum 3TCK RepID=Q1Z7Z9_PHOPR
Length = 91
Score = 92.0 bits (227), Expect = 2e-17
Identities = 46/88 (52%), Positives = 59/88 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +LV+ IA ++K A +A D+ I + L +GD+V +VGFGTF VRERAAR GRN
Sbjct: 3 KTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG +QIAA+K P FK LKD+VN
Sbjct: 63 PQTGEEIQIAAAKVPGFKPGKALKDSVN 90
[245][TOP]
>UniRef100_Q0F0M1 Histone-like protein n=1 Tax=Mariprofundus ferrooxydans PV-1
RepID=Q0F0M1_9PROT
Length = 90
Score = 92.0 bits (227), Expect = 2e-17
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+L+ +A L+K A +A ++++ GI L NGD V++VGFGTF V ERAAR RN
Sbjct: 3 KAELINHVAAAADLSKAAAGEAVEAVLSGITGTLANGDAVSLVGFGTFSVAERAARTARN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +++ ASKAP FKA LKDAV
Sbjct: 63 PRTGEAIEVGASKAPKFKAGKALKDAV 89
[246][TOP]
>UniRef100_C4VMS1 DNA-binding protein HU n=3 Tax=Lactobacillus jensenii
RepID=C4VMS1_9LACO
Length = 91
Score = 92.0 bits (227), Expect = 2e-17
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
KA+LV +A + LTK A A D++ I++ L G++V ++GFGTFEVR RAAR+GRN
Sbjct: 4 KAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKGRN 63
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG ++I ASK P FK LKDAV
Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALKDAV 90
[247][TOP]
>UniRef100_A1JNM8 DNA-binding protein HU-beta n=7 Tax=Yersinia RepID=A1JNM8_YERE8
Length = 90
Score = 92.0 bits (227), Expect = 2e-17
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K++L++ IA ++K A +A D++I + ++L GD V +VGFGTF VRER+AR GRN
Sbjct: 3 KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVN 391
P TG + I A+K P F+A GLKDAVN
Sbjct: 63 PQTGKEISIPAAKVPGFRAGKGLKDAVN 90
[248][TOP]
>UniRef100_C4FNZ0 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC
17748 RepID=C4FNZ0_9FIRM
Length = 99
Score = 92.0 bits (227), Expect = 2e-17
Identities = 45/93 (48%), Positives = 62/93 (66%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L+ ++A + LTK A KA ++ + + L G +V ++GFGTFEVRERAAR+GRN
Sbjct: 3 KTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREGRN 62
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAVNGREPK 406
P G + IAASK+P FKA GLK+ VN + K
Sbjct: 63 PQNGKTITIAASKSPAFKAGKGLKEQVNAAKAK 95
[249][TOP]
>UniRef100_C2NV65 DNA-binding protein HU n=1 Tax=Bacillus cereus 172560W
RepID=C2NV65_BACCE
Length = 93
Score = 92.0 bits (227), Expect = 2e-17
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 128 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 307
K +L + +A + LT+ AA A +L+ I +AL G++V I+GFGTFEVRER+AR GRN
Sbjct: 6 KTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTGRN 65
Query: 308 PSTGAVLQIAASKAPVFKASVGLKDAV 388
P TG +QIAASKAP FKA LK+AV
Sbjct: 66 PQTGEEMQIAASKAPAFKAGKELKEAV 92
[250][TOP]
>UniRef100_C0CMG8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
DSM 10507 RepID=C0CMG8_9FIRM
Length = 102
Score = 92.0 bits (227), Expect = 2e-17
Identities = 48/92 (52%), Positives = 59/92 (64%)
Frame = +2
Query: 116 NTTGKAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAAR 295
NT K +LV A+A E L K S I + D L G++V +VGFGTFEV +RAAR
Sbjct: 9 NTMNKTELVAAMAKETKLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAAR 68
Query: 296 QGRNPSTGAVLQIAASKAPVFKASVGLKDAVN 391
+GRNP TG ++I+ASKAP FKA LKD VN
Sbjct: 69 EGRNPQTGETMKISASKAPKFKAGKALKDLVN 100