[UP]
[1][TOP]
>UniRef100_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=1 Tax=Chlamydomonas
reinhardtii RepID=Q8LK21_CHLRE
Length = 752
Score = 300 bits (767), Expect = 4e-80
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 8 AVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYK 187
AVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYK
Sbjct: 441 AVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYK 500
Query: 188 LVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAE 367
LVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAE
Sbjct: 501 LVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAE 560
Query: 368 TGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
TGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR
Sbjct: 561 TGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 591
[2][TOP]
>UniRef100_Q6JDV1 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii
RepID=Q6JDV1_CHLRE
Length = 311
Score = 298 bits (763), Expect = 1e-79
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +2
Query: 11 VCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKL 190
VCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKL
Sbjct: 1 VCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKL 60
Query: 191 VMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAET 370
VMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAET
Sbjct: 61 VMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAET 120
Query: 371 GRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
GRAVRLPMHMIEQLTRLKNLSAKLQTQLAR
Sbjct: 121 GRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 150
[3][TOP]
>UniRef100_Q948V6 Chloroplast RNA polymerase sigma factor (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=Q948V6_CHLRE
Length = 250
Score = 205 bits (521), Expect = 1e-51
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = +2
Query: 155 AKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWW 334
AKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWW
Sbjct: 7 AKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWW 66
Query: 335 IRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
IRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR
Sbjct: 67 IRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 108
[4][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 139 bits (349), Expect = 1e-31
Identities = 64/148 (43%), Positives = 102/148 (68%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LEK++ E+ T + AAA +D ++L+ R + G++ K+ ++KSN +LV+
Sbjct: 294 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 353
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G +IQDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QAV +SL++ R
Sbjct: 354 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 413
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM+E R+K +L ++ R
Sbjct: 414 TIRLPFHMVEATYRVKEARKQLYSENGR 441
[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 135 bits (339), Expect = 2e-30
Identities = 62/148 (41%), Positives = 100/148 (67%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + + R T + A+A +D +SL+ R G K+ ++KSN +LV+
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++G EK+DATKGF+F TYAHWWI+QAV +SL++ R
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM+E R+K +L ++ +
Sbjct: 406 MIRLPFHMVEATYRVKEARKQLYSETGK 433
[6][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 135 bits (339), Expect = 2e-30
Identities = 62/148 (41%), Positives = 100/148 (67%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + + R T + A+A +D +SL+ R G K+ ++KSN +LV+
Sbjct: 288 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 347
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++G EK+DATKGF+F TYAHWWI+QAV +SL++ R
Sbjct: 348 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 407
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM+E R+K +L ++ +
Sbjct: 408 MIRLPFHMVEATYRVKEARKQLYSETGK 435
[7][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 135 bits (339), Expect = 2e-30
Identities = 62/148 (41%), Positives = 100/148 (67%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + + R T + A+A +D +SL+ R G K+ ++KSN +LV+
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++G EK+DATKGF+F TYAHWWI+QAV +SL++ R
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM+E R+K +L ++ +
Sbjct: 406 MIRLPFHMVEATYRVKEARKQLYSETGK 433
[8][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 134 bits (338), Expect = 2e-30
Identities = 63/148 (42%), Positives = 97/148 (65%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE +K E+ + R AT E + AV M+ + + R G AK+ ++ SN +LV+
Sbjct: 290 QDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVV 349
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G+G +QDL+ EG GL++G EK+D TKGF+F TYAHWWIRQAV+RS+A+ R
Sbjct: 350 SIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSR 409
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+ L + R
Sbjct: 410 TIRLPIHLYEVISRINKAKRMLVQEHGR 437
[9][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 133 bits (335), Expect = 5e-30
Identities = 62/151 (41%), Positives = 100/151 (66%)
Frame = +2
Query: 8 AVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYK 187
A +D L LE+++ + + T + AAA +D +L+ R + G K+ ++KSN +
Sbjct: 282 AAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIR 341
Query: 188 LVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAE 367
LV+++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QAV +SL++
Sbjct: 342 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 401
Query: 368 TGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP HM+E R+K +L ++ R
Sbjct: 402 QSRTIRLPFHMVEATYRVKEARKQLYSENGR 432
[10][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 133 bits (334), Expect = 7e-30
Identities = 61/148 (41%), Positives = 100/148 (67%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + ++ T + AAA +D +L+ R + + K+ ++KSN +LV+
Sbjct: 280 QDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVI 339
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++GVEK+DA+KGF+F TYAHWWIRQAV RSL++ R
Sbjct: 340 SIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSR 399
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM++ R+K + ++ R
Sbjct: 400 TIRLPFHMVDATYRVKEARKQFYSENGR 427
[11][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 132 bits (332), Expect = 1e-29
Identities = 60/148 (40%), Positives = 98/148 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + + T + A+A +D ++L+ R G + K+ ++KSN +LV+
Sbjct: 286 QDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVI 345
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G QDLV EG +GL++G EK+DATKGF+F TYAHWWI+QAV +SL++ R
Sbjct: 346 SIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM+E R+K +L ++ +
Sbjct: 406 MIRLPFHMVEATYRVKEARKQLYSETGK 433
[12][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 132 bits (331), Expect = 2e-29
Identities = 59/148 (39%), Positives = 101/148 (68%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE+++ + ++ + + AAA +D +L+ R + G+ K+ ++KSN +LV+
Sbjct: 283 QDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVI 342
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QAV +SL++ R
Sbjct: 343 SIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSR 402
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM++ R+K +L ++ R
Sbjct: 403 TIRLPFHMVDATYRVKEARKQLYSENGR 430
[13][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 130 bits (328), Expect = 3e-29
Identities = 60/145 (41%), Positives = 98/145 (67%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LEK+ + + + + + AAA +D +L+ R + G K+ ++KSN +LV+
Sbjct: 291 QDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVI 350
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QAV +SL++ R
Sbjct: 351 SIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQ 451
+RLP HM+E R+K +L ++
Sbjct: 411 TIRLPFHMVEATYRVKEARKQLLSE 435
[14][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 129 bits (325), Expect = 8e-29
Identities = 59/148 (39%), Positives = 98/148 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LEK++ + ++ + R T E + AV++D SL+LR G AK+ L+ SN +LV+
Sbjct: 297 QDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGRSAKDKLVNSNLRLVV 356
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G+G + DL+ EG GL++G EK+D G++F TYA WWIRQAV+R++A+ R
Sbjct: 357 SIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATWWIRQAVTRAIADQSR 416
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+ + +L R
Sbjct: 417 IIRLPVHIYEVISRINKAKMTISQELGR 444
[15][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 129 bits (325), Expect = 8e-29
Identities = 59/142 (41%), Positives = 94/142 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
RD L LEKVK ++ + R + E + AV M+ + +LR G +K+ ++ SN +LV+
Sbjct: 304 RDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKEGRYSKDKMVNSNLRLVV 363
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K++ G+G + DL+ EG GL++G EK+D KGF+F TYAHWWIRQAV+R++A+ R
Sbjct: 364 SIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTYAHWWIRQAVTRAIADQSR 423
Query: 377 AVRLPMHMIEQLTRLKNLSAKL 442
+RLP+H+ E ++R+ L
Sbjct: 424 IIRLPIHLYEVISRINKAKKML 445
[16][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 127 bits (318), Expect = 5e-28
Identities = 57/143 (39%), Positives = 96/143 (67%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LE ++ +T+ R T E A A + E+LK + G +AK+ +++SN +LV+++ K
Sbjct: 42 LEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQAKDKMMRSNLRLVVSIAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ G + DL+ EG GL +GVEK+D KG+RF TYA+WWIRQA++R++A+TGR +RLP
Sbjct: 102 YRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWWIRQAITRAIADTGRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L++++ ++ +L R
Sbjct: 162 IHINEKLSKIRKAQREVSLELGR 184
[17][TOP]
>UniRef100_B8HU39 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HU39_CYAP4
Length = 372
Score = 126 bits (317), Expect = 7e-28
Identities = 59/143 (41%), Positives = 94/143 (65%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L ++K Q + L R AT E+AAA+ + + L++R G AK +++SN +LV+++ K
Sbjct: 93 LSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQVAKSKMIRSNLRLVVSIAKR 152
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DLV EG GL + EK+D KGF+F TYA+WWIRQ ++R++A R +RLP
Sbjct: 153 YLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFSTYAYWWIRQGITRAIANDSRTIRLP 212
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L L+ +L R
Sbjct: 213 IHIVEKLNKLKKLQRHLKKELQR 235
[18][TOP]
>UniRef100_Q7V934 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V934_PROMM
Length = 335
Score = 126 bits (316), Expect = 9e-28
Identities = 55/148 (37%), Positives = 97/148 (65%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE+++ + E PA+ +E+A A + LK + +G +AKE ++ +N +LV+
Sbjct: 54 QELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L ++ R
Sbjct: 174 TIRLPIHITEMLNKLKKGQRELSQEMGR 201
[19][TOP]
>UniRef100_Q7V6S8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V6S8_PROMM
Length = 320
Score = 126 bits (316), Expect = 9e-28
Identities = 55/148 (37%), Positives = 97/148 (65%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE+++ + E PA+ +E+A A + LK + +G +AKE ++ +N +LV+
Sbjct: 39 QELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVV 98
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 99 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 158
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L ++ R
Sbjct: 159 TIRLPIHITEMLNKLKKGQRELSQEMGR 186
[20][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 126 bits (316), Expect = 9e-28
Identities = 58/148 (39%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ T + A A D +L+ R + G+ K ++KSN +LV+
Sbjct: 253 QDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVI 312
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 313 SIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 372
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L+ QL R
Sbjct: 373 IIRLPAHMAEASSRVKECRRRLRRQLKR 400
[21][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 126 bits (316), Expect = 9e-28
Identities = 58/148 (39%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ T + A A D +L+ R + G+ K ++KSN +LV+
Sbjct: 56 QDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVI 115
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 116 SIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 175
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L+ QL R
Sbjct: 176 IIRLPAHMAEASSRVKECRRRLRRQLKR 203
[22][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 126 bits (316), Expect = 9e-28
Identities = 58/148 (39%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ T + A A D +L+ R + G+ K ++KSN +LV+
Sbjct: 210 QDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVI 269
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 270 SIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 329
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L+ QL R
Sbjct: 330 IIRLPAHMAEASSRVKECRRRLRRQLKR 357
[23][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 126 bits (316), Expect = 9e-28
Identities = 58/148 (39%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ T + A A D +L+ R + G+ K ++KSN +LV+
Sbjct: 253 QDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVI 312
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 313 SIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 372
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L+ QL R
Sbjct: 373 IIRLPAHMAEASSRVKECRRRLRRQLKR 400
[24][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 125 bits (315), Expect = 1e-27
Identities = 56/147 (38%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ Q L R +E A V M ++S + R G +AK+ +++SN +LV++
Sbjct: 97 DLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVS 156
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 157 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 216
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 217 IRLPVHLYETISRIKKTTKLLSQEMGR 243
[25][TOP]
>UniRef100_A2C8C3 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C8C3_PROM3
Length = 320
Score = 125 bits (315), Expect = 1e-27
Identities = 55/148 (37%), Positives = 97/148 (65%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE+++ + E PA+ +E+A A + LK + +G +AKE ++ +N +LV+
Sbjct: 39 QELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVV 98
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 99 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 158
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L ++ R
Sbjct: 159 TIRLPIHITEMLNKLKKGQRELSQEMGR 186
[26][TOP]
>UniRef100_Q7V9N8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7V9N8_PROMA
Length = 328
Score = 125 bits (314), Expect = 1e-27
Identities = 56/148 (37%), Positives = 95/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LEK++R+ E T + + E++A + V L R G++AKE ++ +N +LV+
Sbjct: 47 QELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVRAKERMVSANLRLVV 106
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 107 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 166
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L L R
Sbjct: 167 IIRLPIHITELLNKLKKGQRELSQHLER 194
[27][TOP]
>UniRef100_A9BD74 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BD74_PROM4
Length = 335
Score = 125 bits (314), Expect = 1e-27
Identities = 55/148 (37%), Positives = 98/148 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE +++ + T + +E+A+A + V +LK ++ G +AKE ++ +N +LV+
Sbjct: 54 QELMALENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRLGERAKERMVAANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK L QL+R
Sbjct: 174 AIRLPIHITEMLNKLKKGQRDLSQQLSR 201
[28][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 125 bits (313), Expect = 2e-27
Identities = 55/147 (37%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+V+ + + L R E A AV + + + + R G +AK+ +++SN +LV++
Sbjct: 108 DLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVS 167
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 168 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 227
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 228 IRLPVHLYETISRIKKTTKLLSQEMGR 254
[29][TOP]
>UniRef100_A2C609 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C609_PROM3
Length = 350
Score = 125 bits (313), Expect = 2e-27
Identities = 55/148 (37%), Positives = 96/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE+++ + E PA+ +E+A A + LK + G +AKE ++ +N +LV+
Sbjct: 69 QELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRRAKERMVSANLRLVV 128
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 129 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 188
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L ++ R
Sbjct: 189 TIRLPIHITEMLNKLKKGQRELSQEMGR 216
[30][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 125 bits (313), Expect = 2e-27
Identities = 59/153 (38%), Positives = 99/153 (64%), Gaps = 5/153 (3%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAA---AVAMDV--ESLKLRYDAGLKAKELLLKSN 181
+D ++LE V+ Q E+ R + E++ A+A +V LK R DAG +AK ++++N
Sbjct: 282 QDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQAN 341
Query: 182 YKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSL 361
+LV+++ K + K QDL+ EG GL++G EK+D +G++F TYAHWWIRQAV+RS+
Sbjct: 342 LRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSI 401
Query: 362 AETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++ R +RLP+H+ E ++R+ + +L + R
Sbjct: 402 SDQSRTIRLPVHLFEIISRMSKVERQLVMKYGR 434
[31][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 125 bits (313), Expect = 2e-27
Identities = 55/147 (37%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+V+ + + L R E A AV + + + + R G +AK+ +++SN +LV++
Sbjct: 109 DLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVS 168
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 169 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 228
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 229 IRLPVHLYETISRIKKTTKLLSQEMGR 255
[32][TOP]
>UniRef100_B0JY74 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JY74_MICAN
Length = 377
Score = 124 bits (312), Expect = 2e-27
Identities = 58/143 (40%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+V+++ ++ LHRP T E A+A+ +D E L+ R G AK +++SN +LV+++ K
Sbjct: 98 EEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKR 157
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 158 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 217
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ L R
Sbjct: 218 IHIVEKLNKLKKAQRILKQDLQR 240
[33][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 124 bits (311), Expect = 3e-27
Identities = 58/148 (39%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ + T + AAA D +L+ R + G+ K ++KSN +LV+
Sbjct: 241 QDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVI 300
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K G G DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 301 SIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 360
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L+ +L R
Sbjct: 361 IIRLPAHMAEASSRVKECCRRLRRELKR 388
[34][TOP]
>UniRef100_B1PVW0 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVW0_MICAE
Length = 377
Score = 124 bits (310), Expect = 4e-27
Identities = 58/143 (40%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+V+++ ++ LHRP T E A A+ +D E L+ R G AK +++SN +LV+++ K
Sbjct: 98 EEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKR 157
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 158 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 217
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ L R
Sbjct: 218 IHIVEKLNKLKKAQRILKQDLQR 240
[35][TOP]
>UniRef100_A8YJF2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YJF2_MICAE
Length = 377
Score = 124 bits (310), Expect = 4e-27
Identities = 58/143 (40%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+V+++ ++ LHRP T E A A+ +D E L+ R G AK +++SN +LV+++ K
Sbjct: 98 EEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKR 157
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 158 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 217
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ L R
Sbjct: 218 IHIVEKLNKLKKAQRILKQDLQR 240
[36][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 124 bits (310), Expect = 4e-27
Identities = 55/147 (37%), Positives = 96/147 (65%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+V+ + ++ L R E A AV + + + + R G +AK+ +++SN +LV++
Sbjct: 110 DLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVS 169
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 170 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 229
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 230 IRLPVHLYETISRIKKTTKLLSQEMGR 256
[37][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 123 bits (309), Expect = 6e-27
Identities = 57/147 (38%), Positives = 94/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + L R E A AV M++ K R G +AKE +++SN +LV++
Sbjct: 105 DLLELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVS 164
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 165 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 224
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 225 IRLPVHLYETISRIKKTTKLLSQEMGR 251
[38][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 123 bits (309), Expect = 6e-27
Identities = 55/147 (37%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + HR +E A AV M + + R G +AK+ +++SN +LV++
Sbjct: 106 DLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVS 165
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 166 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 225
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 226 IRLPVHLYETISRIKKTTKLLSQEMGR 252
[39][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 123 bits (309), Expect = 6e-27
Identities = 58/147 (39%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E R ++E AA V M V + R G +AKE +++SN +LV++
Sbjct: 175 DLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFRRRLMLGRRAKEKMVQSNLRLVVS 234
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 235 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 294
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 295 IRLPVHLYETISRIKKTTKVLSQEFGR 321
[40][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 123 bits (308), Expect = 7e-27
Identities = 56/147 (38%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ Q + R T +E A A M ++ + R G +AK+ +++SN +LV++
Sbjct: 94 DLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVS 153
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 154 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 213
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L +L R
Sbjct: 214 IRLPVHLYETISRIKKTTKILSQELGR 240
[41][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 123 bits (308), Expect = 7e-27
Identities = 57/147 (38%), Positives = 94/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L+LE++ Q E R ++E AA V M + + R G +AKE +++SN +LV++
Sbjct: 154 DLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVS 213
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 214 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 273
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 274 IRLPVHLYETISRIKKTTKVLSQEFGR 300
[42][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 123 bits (308), Expect = 7e-27
Identities = 54/147 (36%), Positives = 98/147 (66%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + ++L R + +E A V M++ + + R G +AK+ +++SN +LV++
Sbjct: 95 DLLELERLREKLRRSLGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVS 154
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 155 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 214
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 215 IRLPVHLYETISRIKKTTKILSQEMRR 241
[43][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 123 bits (308), Expect = 7e-27
Identities = 57/147 (38%), Positives = 94/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L+LE++ Q E R ++E AA V M + + R G +AKE +++SN +LV++
Sbjct: 177 DLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVS 236
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 237 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 296
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 297 IRLPVHLYETISRIKKTTKVLSQEFGR 323
[44][TOP]
>UniRef100_Q5N3S3 Group2 RNA polymerase sigma factor RpoD3 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5N3S3_SYNP6
Length = 326
Score = 122 bits (307), Expect = 9e-27
Identities = 54/130 (41%), Positives = 89/130 (68%)
Frame = +2
Query: 71 RPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVS 250
R + E AAA + +E L+ + G +AK ++++N +LV++V K ++ + + DL+
Sbjct: 63 RDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 122
Query: 251 EGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNL 430
EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP+H+ E+L ++K +
Sbjct: 123 EGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKM 182
Query: 431 SAKLQTQLAR 460
+L QL R
Sbjct: 183 QRQLSQQLGR 192
[45][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 122 bits (307), Expect = 9e-27
Identities = 55/147 (37%), Positives = 96/147 (65%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + L R + E AAAV ++ + R G +AK+ +++SN +LV++
Sbjct: 118 DLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVS 177
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 178 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 237
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 238 IRLPVHLYETISRIKKTTKLLSQEMGR 264
[46][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 122 bits (307), Expect = 9e-27
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L+LE++ Q E R +E AA V M + + R G +AKE +++SN +LV++
Sbjct: 170 DLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVS 229
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 230 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 289
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 290 IRLPVHLYETISRIKKTTKVLSQEFGR 316
[47][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 122 bits (307), Expect = 9e-27
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L+LE++ Q E R +E AA V M + + R G +AKE +++SN +LV++
Sbjct: 170 DLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVS 229
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 230 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 289
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 290 IRLPVHLYETISRIKKTTKVLSQEFGR 316
[48][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 122 bits (307), Expect = 9e-27
Identities = 54/147 (36%), Positives = 97/147 (65%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + L R + +E A V M++ + + R G +AK+ +++SN +LV++
Sbjct: 96 DLLELERLREKLRRNLGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVS 155
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 156 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 215
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 216 IRLPVHLYETISRIKKTTKILSQEMRR 242
[49][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 122 bits (307), Expect = 9e-27
Identities = 57/148 (38%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++ + + T + A A +D +L+ R D G+ K ++ SN +LV+
Sbjct: 277 QDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVI 336
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G + DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S++E +
Sbjct: 337 SIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQ 396
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP HM+E R+K +L+ +L R
Sbjct: 397 IFRLPAHMVEASYRVKECIKRLRRKLKR 424
[50][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 122 bits (307), Expect = 9e-27
Identities = 57/148 (38%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++ + + T + A A +D +L+ R D G+ K ++ SN +LV+
Sbjct: 277 QDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVI 336
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G + DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S++E +
Sbjct: 337 SIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQ 396
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP HM+E R+K +L+ +L R
Sbjct: 397 IFRLPAHMVEASYRVKECIKRLRRKLKR 424
[51][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 122 bits (307), Expect = 9e-27
Identities = 57/148 (38%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++ + + T + A A +D +L+ R D G+ K ++ SN +LV+
Sbjct: 277 QDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVI 336
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G + DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S++E +
Sbjct: 337 SIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQ 396
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP HM+E R+K +L+ +L R
Sbjct: 397 IFRLPAHMVEASYRVKECIKRLRRKLKR 424
[52][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 122 bits (307), Expect = 9e-27
Identities = 57/148 (38%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++ + + T + A A +D +L+ R D G+ K ++ SN +LV+
Sbjct: 276 QDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVI 335
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G + DL+ EG++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S++E +
Sbjct: 336 SIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQ 395
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP HM+E R+K +L+ +L R
Sbjct: 396 IFRLPAHMVEASYRVKECIKRLRRKLKR 423
[53][TOP]
>UniRef100_Q31QG5 RNA polymerase sigma factor rpoD3 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD3_SYNE7
Length = 320
Score = 122 bits (307), Expect = 9e-27
Identities = 54/130 (41%), Positives = 89/130 (68%)
Frame = +2
Query: 71 RPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVS 250
R + E AAA + +E L+ + G +AK ++++N +LV++V K ++ + + DL+
Sbjct: 57 RDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
Query: 251 EGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNL 430
EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP+H+ E+L ++K +
Sbjct: 117 EGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKM 176
Query: 431 SAKLQTQLAR 460
+L QL R
Sbjct: 177 QRQLSQQLGR 186
[54][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 122 bits (307), Expect = 9e-27
Identities = 55/147 (37%), Positives = 96/147 (65%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + L R + E AAAV ++ + R G +AK+ +++SN +LV++
Sbjct: 118 DLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVS 177
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 178 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 237
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 238 IRLPVHLYETISRIKKTTKLLSQEMGR 264
[55][TOP]
>UniRef100_Q8DM59 Group2 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus
elongatus BP-1 RepID=Q8DM59_THEEB
Length = 315
Score = 122 bits (306), Expect = 1e-26
Identities = 55/143 (38%), Positives = 94/143 (65%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
+ +++ + L+R T E AAA + L+ + G +AK ++++N +LV++V K
Sbjct: 39 MNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGERAKRKMVEANLRLVVSVAKK 98
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 99 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 158
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L +L R
Sbjct: 159 IHITEKLNKIKKAQRQLSQRLGR 181
[56][TOP]
>UniRef100_B7KAB6 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7424 RepID=B7KAB6_CYAP7
Length = 318
Score = 122 bits (306), Expect = 1e-26
Identities = 60/146 (41%), Positives = 95/146 (65%)
Frame = +2
Query: 23 FLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTV 202
F+ L+ +K +TL R E A+A + E L AG AKE ++++N +LV++V
Sbjct: 39 FMALQDIKDALTQTLKREPQDSEWASAAKITEEELHRAIAAGKAAKEKMVEANLRLVVSV 98
Query: 203 CKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAV 382
K ++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +
Sbjct: 99 AKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTI 158
Query: 383 RLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP+H+ E+L ++K K Q QL++
Sbjct: 159 RLPIHITEKLNKIK----KAQRQLSQ 180
[57][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 122 bits (306), Expect = 1e-26
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E R ++E AA V M + + R G +AKE +++SN +LV++
Sbjct: 198 DLLLLEELAAQFESDNGREPDTKEWAALVEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVS 257
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 258 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 317
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 318 IRLPVHLYETISRIKKTTKVLSQEFGR 344
[58][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 122 bits (306), Expect = 1e-26
Identities = 56/147 (38%), Positives = 94/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + L R E A V M++ + + R G +AKE +++SN +LV++
Sbjct: 99 DLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVS 158
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 159 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 218
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L +L R
Sbjct: 219 IRLPVHLYETISRIKKTTKILSQELGR 245
[59][TOP]
>UniRef100_B1XKF5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XKF5_SYNP2
Length = 328
Score = 122 bits (305), Expect = 2e-26
Identities = 56/143 (39%), Positives = 93/143 (65%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++ ++ E++L R AT EE A A + + L+ G +AK ++++N +LV+ + K
Sbjct: 51 LQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ GR +RLP
Sbjct: 111 YQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L L R
Sbjct: 171 IHITEKLNKIKKTQRQLAQDLGR 193
[60][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 122 bits (305), Expect = 2e-26
Identities = 55/147 (37%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + L T + A AV M + + + R G +AK+ +++SN +LV++
Sbjct: 123 DLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQSNLRLVVS 182
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 183 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 242
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L +L R
Sbjct: 243 IRLPVHLYETISRIKKTTKLLSQELGR 269
[61][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 122 bits (305), Expect = 2e-26
Identities = 57/148 (38%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++++ + T + AAA D +L+ R + G+ K ++KSN +LV+
Sbjct: 240 QDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVI 299
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K G G DL+ +G++GL++G EK+DA+KGFRF TY+HWWI+QA+ +S+ E +
Sbjct: 300 SIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQ 359
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP HM E +R+K +L +L R
Sbjct: 360 IIRLPAHMAEASSRVKECCRRLGRELKR 387
[62][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 121 bits (303), Expect = 3e-26
Identities = 57/147 (38%), Positives = 92/147 (62%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E R +E AA V M + + R G +AKE +++SN +LV++
Sbjct: 190 DLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVS 249
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 250 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 309
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 310 IRLPVHLYETISRIKKTTKVLSQEFGR 336
[63][TOP]
>UniRef100_Q0IDY7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IDY7_SYNS3
Length = 335
Score = 121 bits (303), Expect = 3e-26
Identities = 53/125 (42%), Positives = 84/125 (67%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
EE+A A + LK + AG +AKE ++ +N +LV++V K + + + DL+ EG G
Sbjct: 77 EEVAKAAGVSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 136
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 137 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELS 196
Query: 446 TQLAR 460
+L R
Sbjct: 197 QELGR 201
[64][TOP]
>UniRef100_A2BZ14 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BZ14_PROM5
Length = 333
Score = 121 bits (303), Expect = 3e-26
Identities = 53/148 (35%), Positives = 97/148 (65%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + EE+AA + + +K R AG +AKE ++ +N +LV+
Sbjct: 52 QEYMQVERAELEIIELTDNKPSVEELAAKLNLSSSQIKKRLRAGQRAKERMVAANLRLVV 111
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 112 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 171
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 172 AIRLPIHITEMLNKLKKGQRELSQEMSR 199
[65][TOP]
>UniRef100_P94906 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
RepID=P94906_MICAE
Length = 376
Score = 121 bits (303), Expect = 3e-26
Identities = 55/131 (41%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+V+++ ++ LHRP T E A A+ +D E L+ R G AK +++SN +LV+++ K
Sbjct: 98 EEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAKRKMIRSNLRLVVSIAKR 157
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 158 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 217
Query: 392 MHMIEQLTRLK 424
+H++E+L +LK
Sbjct: 218 IHIVEKLNKLK 228
[66][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 120 bits (302), Expect = 4e-26
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + ++E AA V M V + R G +AKE +++SN +LV++
Sbjct: 159 DLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVS 218
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 219 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 278
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 279 IRLPVHLYETISRIKKTTKVLSQEFGR 305
[67][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 120 bits (302), Expect = 4e-26
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + ++E AA V M V + R G +AKE +++SN +LV++
Sbjct: 169 DLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVS 228
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 229 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 288
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 289 IRLPVHLYETISRIKKTTKVLSQEFGR 315
[68][TOP]
>UniRef100_B9YSN2 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708
RepID=B9YSN2_ANAAZ
Length = 389
Score = 120 bits (302), Expect = 4e-26
Identities = 59/153 (38%), Positives = 96/153 (62%), Gaps = 3/153 (1%)
Frame = +2
Query: 11 VCRDFLFLEKVK---RQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSN 181
+ R FLE+VK E+ L + + E+AA M + L+ R G AK +++SN
Sbjct: 100 LARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRVAKRKMIRSN 159
Query: 182 YKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSL 361
+LV+++ K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++
Sbjct: 160 LRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAI 219
Query: 362 AETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A R +RLP+H++E+L +LK +L+ +LAR
Sbjct: 220 ANDARTIRLPIHIVEKLNKLKKAQRELKQKLAR 252
[69][TOP]
>UniRef100_A4CYD7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CYD7_SYNPV
Length = 355
Score = 120 bits (302), Expect = 4e-26
Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQC-EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE V+ + EK + E+A A + LK + AG +AKE ++ +N +LV
Sbjct: 73 QELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLV 132
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 133 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 192
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 193 RTIRLPIHITEMLNKLKKGQRELSQELGR 221
[70][TOP]
>UniRef100_A4CVK0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CVK0_SYNPV
Length = 322
Score = 120 bits (302), Expect = 4e-26
Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQC-EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE V+ + EK + E+A A + LK + AG +AKE ++ +N +LV
Sbjct: 39 QELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLV 98
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 99 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 158
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 159 RTIRLPIHITEMLNKLKKGQRELSQELGR 187
[71][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 120 bits (302), Expect = 4e-26
Identities = 57/147 (38%), Positives = 93/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + ++E AA V M V + R G +AKE +++SN +LV++
Sbjct: 166 DLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVS 225
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 226 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 285
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 286 IRLPVHLYETISRIKKTTKVLSQEFGR 312
[72][TOP]
>UniRef100_A0YTG7 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTG7_9CYAN
Length = 319
Score = 120 bits (302), Expect = 4e-26
Identities = 56/143 (39%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++ K + K L R + E A + ++ LK + G AK ++++N +LV++V K
Sbjct: 43 LQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQTAKRKMVEANLRLVVSVAKK 102
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 103 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 162
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K L L R
Sbjct: 163 IHITEKLNKIKKAQRSLAQDLGR 185
[73][TOP]
>UniRef100_Q31ME3 RNA polymerase sigma factor rpoD2 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD2_SYNE7
Length = 320
Score = 120 bits (302), Expect = 4e-26
Identities = 55/131 (41%), Positives = 90/131 (68%)
Frame = +2
Query: 68 HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
H P+ EE AAAV +++E L + + G +AK ++++N +LV+++ K + + DL+
Sbjct: 57 HEPS-KEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLI 115
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL +GVEK+D +KG++F TYA+WWIRQA++R++A+ R +RLP+H+ E+L +LK
Sbjct: 116 QEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKK 175
Query: 428 LSAKLQTQLAR 460
+L QL R
Sbjct: 176 TQRELSQQLGR 186
[74][TOP]
>UniRef100_Q7UZM9 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7UZM9_PROMP
Length = 333
Score = 120 bits (301), Expect = 5e-26
Identities = 52/148 (35%), Positives = 96/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + EE+A + + +K R AG +AKE ++ +N +LV+
Sbjct: 52 QEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQRAKERMVAANLRLVV 111
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 112 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 171
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 172 AIRLPIHITEMLNKLKKGQRELSQEMSR 199
[75][TOP]
>UniRef100_A2BTL1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BTL1_PROMS
Length = 344
Score = 120 bits (301), Expect = 5e-26
Identities = 51/148 (34%), Positives = 99/148 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+++ + + + +E++A + + ++K R AG +AKE ++ +N +LV+
Sbjct: 63 QEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRAGQRAKERMVAANLRLVV 122
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 123 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 182
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 183 AIRLPIHITEMLNKLKKGQRELSQEMSR 210
[76][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 120 bits (301), Expect = 5e-26
Identities = 54/147 (36%), Positives = 94/147 (63%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + H E A+AV M + + R G +AK+ +++SN +LV++
Sbjct: 110 DLLELERIREKLVEHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVS 169
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 170 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 229
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 230 IRLPVHLYETISRIKKTTKLLSQEMGR 256
[77][TOP]
>UniRef100_B0JTP4 Group 2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JTP4_MICAN
Length = 318
Score = 120 bits (300), Expect = 6e-26
Identities = 58/145 (40%), Positives = 94/145 (64%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
+FLEK+K + L + + + A + E L+ AG AK ++++N +LV++V
Sbjct: 40 IFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVA 99
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K ++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +R
Sbjct: 100 KKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIR 159
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
LP+H+ E+L ++K K Q QLA+
Sbjct: 160 LPIHITEKLNKIK----KAQRQLAQ 180
[78][TOP]
>UniRef100_B0C890 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C890_ACAM1
Length = 318
Score = 120 bits (300), Expect = 6e-26
Identities = 54/143 (37%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L+ ++ + + L R E +AA + L+ G AK ++++N +LV++V K
Sbjct: 42 LQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 102 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L +L R
Sbjct: 162 IHITEKLNKIKKTQRQLSQKLGR 184
[79][TOP]
>UniRef100_C7QVB1 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QVB1_CYAP0
Length = 318
Score = 120 bits (300), Expect = 6e-26
Identities = 56/146 (38%), Positives = 93/146 (63%)
Frame = +2
Query: 23 FLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTV 202
F+ LE +K + L + T + A A M + L+ +AG AK ++++N +LV++V
Sbjct: 39 FVALETLKESLTEELGQEPTIAQWAKAAKMTQKELRSAIEAGEAAKRKMVEANLRLVVSV 98
Query: 203 CKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAV 382
K ++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +
Sbjct: 99 AKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTI 158
Query: 383 RLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP+H+ E+L ++K +L + R
Sbjct: 159 RLPIHITEKLNKIKKAQRQLSQEKGR 184
[80][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 120 bits (300), Expect = 6e-26
Identities = 56/134 (41%), Positives = 93/134 (69%)
Frame = +2
Query: 59 KTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQ 238
K+ AT EE+A + ++++L+ DAG +AK+ L ++N +LV+++ K +VG+G
Sbjct: 158 KSREEKATEEELAE-IKEEIKNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFL 216
Query: 239 DLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTR 418
DL+ EG GL+K VEK+D KG++F TYA WWIRQA++R++A+ R +R+P+HM+E + +
Sbjct: 217 DLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 276
Query: 419 LKNLSAKLQTQLAR 460
L +S +L +L R
Sbjct: 277 LIRVSRQLLQELGR 290
[81][TOP]
>UniRef100_B4W0H2 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0H2_9CYAN
Length = 352
Score = 120 bits (300), Expect = 6e-26
Identities = 55/143 (38%), Positives = 93/143 (65%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L + K +TL R T +E A V ++ +LK + G +AK ++++N +LV+ + K
Sbjct: 76 LLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTRAKRKMIEANLRLVVAIAKK 135
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D T+G++F TYA+WWIRQA++R++A+ RA+RLP
Sbjct: 136 YQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLP 195
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K + +L +L R
Sbjct: 196 IHITEKLNKIKKVQRELSQRLGR 218
[82][TOP]
>UniRef100_A8YAB5 Genome sequencing data, contig C249 n=1 Tax=Microcystis aeruginosa
PCC 7806 RepID=A8YAB5_MICAE
Length = 318
Score = 120 bits (300), Expect = 6e-26
Identities = 58/145 (40%), Positives = 93/145 (64%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
+FLEK+K L + + + A + E L+ AG AK ++++N +LV++V
Sbjct: 40 IFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVA 99
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K ++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +R
Sbjct: 100 KKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIR 159
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
LP+H+ E+L ++K K Q QLA+
Sbjct: 160 LPIHITEKLNKIK----KAQRQLAQ 180
[83][TOP]
>UniRef100_A0ZCV4 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZCV4_NODSP
Length = 389
Score = 120 bits (300), Expect = 6e-26
Identities = 57/153 (37%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +2
Query: 11 VCRDFLFLEKVKR---QCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSN 181
+ R FLE+V+ E L +P T ++A + M + L+ R G AK +++SN
Sbjct: 100 LARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRVAKRKMIRSN 159
Query: 182 YKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSL 361
+LV+++ K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++
Sbjct: 160 LRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAI 219
Query: 362 AETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A R +RLP+H++E+L +LK +L+ +L R
Sbjct: 220 ANDARTIRLPIHIVEKLNKLKKAQRELKQKLCR 252
[84][TOP]
>UniRef100_B1X4M1 Type II alternative RNA polymerase sigma factor, sigma-70 family
protein n=1 Tax=Paulinella chromatophora
RepID=B1X4M1_PAUCH
Length = 321
Score = 120 bits (300), Expect = 6e-26
Identities = 52/148 (35%), Positives = 95/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + +++ +++ E T EE+A ++ + + +K + G +AKE ++ SN +LV+
Sbjct: 41 QELICIQETEQKLELKNGIKPTQEELANSLDLSINQVKRKIIHGKRAKEQMVSSNLRLVV 100
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K + + + DLV EG GL++GVEK+D T+G++F TYA+WWIRQ ++R+++E R
Sbjct: 101 SIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTRGYKFSTYAYWWIRQGITRAISEQSR 160
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E+L +LK L L R
Sbjct: 161 TIRLPIHITEELNKLKKAQRDLSQSLGR 188
[85][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 119 bits (299), Expect = 8e-26
Identities = 55/147 (37%), Positives = 92/147 (62%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ L R +E A V M + + R AG +AK+ +++SN +LV++
Sbjct: 90 DLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVS 149
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 150 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 209
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 210 IRLPVHLYETISRIKKTTKLLSQEMGR 236
[86][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 119 bits (299), Expect = 8e-26
Identities = 57/147 (38%), Positives = 92/147 (62%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + +E AA V M V + R G +AKE +++SN +LV++
Sbjct: 144 DLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVS 203
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 264 IRLPVHLYETISRIKKTTKVLSQEFGR 290
[87][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 119 bits (299), Expect = 8e-26
Identities = 54/147 (36%), Positives = 95/147 (64%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+++ + + + R T E + A+ M+ + + R G KAK+ ++ SN +LV++
Sbjct: 98 DLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVS 157
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 158 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 217
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L ++ R
Sbjct: 218 IRLPVHLYETISRIKKTTKILSQEMRR 244
[88][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 119 bits (299), Expect = 8e-26
Identities = 55/148 (37%), Positives = 95/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D L LE ++ + + T + A A +D ++L+ R + G+ K ++ SN +LV+
Sbjct: 252 QDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKNRMVTSNVRLVI 311
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ + F G G DL+ EG++GL++G EK+D++KGFRF TY+HWWI+QA+ +S++E +
Sbjct: 312 SIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYSHWWIKQAMRKSVSEQSQ 371
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP HM+E R+K + +L+ +L R
Sbjct: 372 IFRLPAHMVEASYRVKECTKRLRRKLRR 399
[89][TOP]
>UniRef100_Q10XF4 RNA polymerase, sigma 28 subunit n=1 Tax=Trichodesmium erythraeum
IMS101 RepID=Q10XF4_TRIEI
Length = 319
Score = 119 bits (298), Expect = 1e-25
Identities = 56/143 (39%), Positives = 92/143 (64%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++ + + L R T E A A + L+ G +AK ++++N +LV++V K
Sbjct: 43 LQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGERAKRKMVEANLRLVVSVAKK 102
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 103 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 162
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K + +L QL R
Sbjct: 163 IHITEKLNKIKKVQRQLTQQLGR 185
[90][TOP]
>UniRef100_Q0IBE2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IBE2_SYNS3
Length = 318
Score = 119 bits (298), Expect = 1e-25
Identities = 53/125 (42%), Positives = 83/125 (66%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
+E A A M LK + AG +AKE ++ +N +LV++V K + + + DL+ EG G
Sbjct: 60 DEWAKAAGMSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 119
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 120 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELS 179
Query: 446 TQLAR 460
+L R
Sbjct: 180 QELGR 184
[91][TOP]
>UniRef100_B5VZJ5 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Arthrospira
maxima CS-328 RepID=B5VZJ5_SPIMA
Length = 331
Score = 119 bits (298), Expect = 1e-25
Identities = 56/143 (39%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++ + + K L T + A V + V L+ G AK ++++N +LV++V K
Sbjct: 55 LQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKK 114
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 115 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 174
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L QL R
Sbjct: 175 IHITEKLNKIKKAQRQLAQQLGR 197
[92][TOP]
>UniRef100_B5INB3 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5INB3_9CHRO
Length = 335
Score = 119 bits (298), Expect = 1e-25
Identities = 57/149 (38%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSE-EIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE+++++ A S E+A A + LK R AG +AKE ++ +N +LV
Sbjct: 48 QELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGRRAKERMVAANLRLV 107
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 108 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 167
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 168 RTIRLPIHITETLNKLKKGQRELSQELGR 196
[93][TOP]
>UniRef100_B5IJI5 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IJI5_9CHRO
Length = 319
Score = 119 bits (298), Expect = 1e-25
Identities = 57/149 (38%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSE-EIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE+++++ A S E+A A + LK R AG +AKE ++ +N +LV
Sbjct: 32 QELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGRRAKERMVAANLRLV 91
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 92 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 151
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 152 RTIRLPIHITETLNKLKKGQRELSQELGR 180
[94][TOP]
>UniRef100_Q7NEW6 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NEW6_GLOVI
Length = 362
Score = 119 bits (297), Expect = 1e-25
Identities = 57/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L +K + +L + E+ A A + + LK + AG +AK+ ++++N +LV++V K
Sbjct: 82 LTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSRAKKKMIEANLRLVVSVAKK 141
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ +G + DLV EG GL + VEK+D TKG+RF TYA+WWIRQ ++R++A R +RLP
Sbjct: 142 YQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLP 201
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L R+K KL L R
Sbjct: 202 VHITEKLNRIKKTQRKLSQNLGR 224
[95][TOP]
>UniRef100_Q5MZI5 Group2 RNA polymerase sigma factor RpoD2 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5MZI5_SYNP6
Length = 320
Score = 119 bits (297), Expect = 1e-25
Identities = 54/131 (41%), Positives = 89/131 (67%)
Frame = +2
Query: 68 HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
H P+ EE AAAV +++E L + + G +AK ++++N +LV+++ K + + DL+
Sbjct: 57 HEPS-KEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLI 115
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL +G EK+D +KG++F TYA+WWIRQA++R++A+ R +RLP+H+ E+L +LK
Sbjct: 116 QEGTLGLERGFEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKK 175
Query: 428 LSAKLQTQLAR 460
+L QL R
Sbjct: 176 TQRELSQQLGR 186
[96][TOP]
>UniRef100_Q2JRK5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JRK5_SYNJA
Length = 361
Score = 119 bits (297), Expect = 1e-25
Identities = 53/145 (36%), Positives = 93/145 (64%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L +++ +R+ + + + EE+AAA+ + V +L+ R G +A+ L+ +N +LV++V
Sbjct: 81 LLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKLINANLRLVVSVA 140
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K ++ +G DL+ EG GL++ EK++A +GFRF TYAHWWIRQ ++R +A R +R
Sbjct: 141 KKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQARTIR 200
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
LP+HM++++ LK + +L R
Sbjct: 201 LPVHMVDKVRLLKRTNRELMKARGR 225
[97][TOP]
>UniRef100_A3Z7W8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z7W8_9SYNE
Length = 321
Score = 119 bits (297), Expect = 1e-25
Identities = 52/124 (41%), Positives = 83/124 (66%)
Frame = +2
Query: 89 EIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGL 268
E+A A + LK + AG +AKE ++ +N +LV++V K + + + DL+ EG GL
Sbjct: 64 ELATAAGLSALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGL 123
Query: 269 LKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQT 448
++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 124 VRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQ 183
Query: 449 QLAR 460
+L R
Sbjct: 184 ELGR 187
[98][TOP]
>UniRef100_A3Z449 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z449_9SYNE
Length = 309
Score = 119 bits (297), Expect = 1e-25
Identities = 52/124 (41%), Positives = 83/124 (66%)
Frame = +2
Query: 89 EIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGL 268
E+A A + LK + AG +AKE ++ +N +LV++V K + + + DL+ EG GL
Sbjct: 52 ELATAAGLSALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGL 111
Query: 269 LKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQT 448
++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 112 VRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQ 171
Query: 449 QLAR 460
+L R
Sbjct: 172 ELGR 175
[99][TOP]
>UniRef100_Q318B2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q318B2_PROM9
Length = 344
Score = 118 bits (296), Expect = 2e-25
Identities = 51/148 (34%), Positives = 98/148 (66%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + EE+++ + + + +K R AG +AKE ++ +N +LV+
Sbjct: 63 QEYMQVERAELEIIELTGDKPSIEELSSKLNLSIPIIKKRLRAGQRAKERMVAANLRLVV 122
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 123 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 182
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 183 AIRLPIHITEMLNKLKKGQRELSQEMSR 210
[100][TOP]
>UniRef100_B1XQ38 Sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQ38_SYNP2
Length = 318
Score = 118 bits (296), Expect = 2e-25
Identities = 57/143 (39%), Positives = 95/143 (66%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK+K + + + + +E A A + LK + G +AK+ ++++N +LV++V K
Sbjct: 42 LEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 102 YIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K K Q QLA+
Sbjct: 162 IHITEKLNKIK----KAQRQLAQ 180
[101][TOP]
>UniRef100_A5GM05 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GM05_SYNPW
Length = 322
Score = 118 bits (296), Expect = 2e-25
Identities = 54/135 (40%), Positives = 85/135 (62%)
Frame = +2
Query: 56 EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHI 235
EK + E+A A + LK + AG +AKE ++ +N +LV++V K + + +
Sbjct: 53 EKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMEL 112
Query: 236 QDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLT 415
DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L
Sbjct: 113 LDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLN 172
Query: 416 RLKNLSAKLQTQLAR 460
+LK +L L R
Sbjct: 173 KLKKGQRELSQDLGR 187
[102][TOP]
>UniRef100_A5GI14 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GI14_SYNPW
Length = 355
Score = 118 bits (296), Expect = 2e-25
Identities = 54/135 (40%), Positives = 85/135 (62%)
Frame = +2
Query: 56 EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHI 235
EK + E+A A + LK + AG +AKE ++ +N +LV++V K + + +
Sbjct: 87 EKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMEL 146
Query: 236 QDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLT 415
DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L
Sbjct: 147 LDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLN 206
Query: 416 RLKNLSAKLQTQLAR 460
+LK +L L R
Sbjct: 207 KLKKGQRELSQDLGR 221
[103][TOP]
>UniRef100_P96034 Sigma factor n=1 Tax=Synechococcus sp. RepID=P96034_SYNSP
Length = 317
Score = 118 bits (296), Expect = 2e-25
Identities = 57/143 (39%), Positives = 95/143 (66%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK+K + + + + +E A A + LK + G +AK+ ++++N +LV++V K
Sbjct: 42 LEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 102 YIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K K Q QLA+
Sbjct: 162 IHITEKLNKIK----KAQRQLAQ 180
[104][TOP]
>UniRef100_C6WAH7 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
RepID=C6WAH7_ACTMD
Length = 330
Score = 118 bits (296), Expect = 2e-25
Identities = 55/125 (44%), Positives = 83/125 (66%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
E A A + L+ GL+AK LL++N +LV+++ K + G+G + DL+ EG G
Sbjct: 70 ETTTALNAGRADELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 129
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L++ VEK+D TKGF+F TYA WWIRQA++R +A+ GR +RLP+H++EQ+ +L + L
Sbjct: 130 LIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLH 189
Query: 446 TQLAR 460
QL R
Sbjct: 190 QQLGR 194
[105][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 118 bits (295), Expect = 2e-25
Identities = 56/147 (38%), Positives = 91/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E T +E AA V M + + R +AKE +++SN +LV++
Sbjct: 157 DLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLMLARRAKEKMVQSNLRLVVS 216
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 217 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 276
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 277 IRLPVHLYETISRIKKTTKVLSQEFGR 303
[106][TOP]
>UniRef100_A2C578 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C578_PROM1
Length = 335
Score = 118 bits (295), Expect = 2e-25
Identities = 54/148 (36%), Positives = 92/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D + LE ++ + E L A + LK + +G +AKE ++ +N +LV+
Sbjct: 54 QDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRRAKERMVAANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++RLP+H+ E L +LK +L +L+R
Sbjct: 174 SIRLPIHITEMLNKLKKGQRELSQELSR 201
[107][TOP]
>UniRef100_P96032 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
RepID=P96032_SYNSP
Length = 328
Score = 118 bits (295), Expect = 2e-25
Identities = 54/143 (37%), Positives = 92/143 (64%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++ ++ E++L R T EE A A + + L+ G +AK ++++N +LV+ + ++
Sbjct: 51 LQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIARN 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ GR +RLP
Sbjct: 111 IKKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L L R
Sbjct: 171 IHITEKLNKIKKTQRQLAQDLGR 193
[108][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 118 bits (295), Expect = 2e-25
Identities = 56/147 (38%), Positives = 92/147 (62%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E ++E AA V M + + R G +AKE +++SN +LV++
Sbjct: 222 DLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVS 281
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 282 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 341
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 342 IRLPVHLYETISRIKKTTKTLSQEFGR 368
[109][TOP]
>UniRef100_B8C130 RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8C130_THAPS
Length = 318
Score = 118 bits (295), Expect = 2e-25
Identities = 58/144 (40%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAV--AMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCK 208
E+V+ + E L RP T +E A A+ M V +K + L+AK L +SN +LV+++ K
Sbjct: 35 EEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAK 94
Query: 209 SFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRL 388
+ G+G ++QDL EG GL + EK+D +GFRF TYA WWI+Q + R++A+ R +RL
Sbjct: 95 RYQGRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRL 154
Query: 389 PMHMIEQLTRLKNLSAKLQTQLAR 460
P+H+ +QL+ ++ LQ +L R
Sbjct: 155 PVHIHDQLSIVRKAERDLQNELGR 178
[110][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 117 bits (294), Expect = 3e-25
Identities = 53/126 (42%), Positives = 87/126 (69%)
Frame = +2
Query: 83 SEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVK 262
SEE A + ++++L+ D G AK+ L ++N +LV+++ K +VG+G DL+ EG
Sbjct: 173 SEEEKAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 232
Query: 263 GLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKL 442
GL+K VEK+D KG++F TYA WWIRQA++R++A+ R +R+P+HM+E + +L +S +L
Sbjct: 233 GLIKAVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 292
Query: 443 QTQLAR 460
+L R
Sbjct: 293 LQELGR 298
[111][TOP]
>UniRef100_B7KBG8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KBG8_CYAP7
Length = 372
Score = 117 bits (294), Expect = 3e-25
Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ ++Q + L RP T E A A+ + E L+ R G AK +++SN +LV+++ K
Sbjct: 93 EEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGRSAKRKMIRSNLRLVVSIAKR 152
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 153 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 212
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ QL R
Sbjct: 213 IHIVEKLNKLKKAQRVLKQQLHR 235
[112][TOP]
>UniRef100_D0CM17 Type II alternative RNA polymerase sigma factor, sigma-70 family
n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CM17_9SYNE
Length = 335
Score = 117 bits (294), Expect = 3e-25
Identities = 53/148 (35%), Positives = 92/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE ++ + E + + +A A + LK + G +AKE ++ +N +LV+
Sbjct: 54 QELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRRAKERMVAANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L +L R
Sbjct: 174 TIRLPIHITEMLNKLKKGQRELSQELGR 201
[113][TOP]
>UniRef100_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7GEJ9_PHATR
Length = 329
Score = 117 bits (294), Expect = 3e-25
Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMD--VESLKLRYDAGLKAKELLLKSNYKLVMTVCK 208
E + Q E L RP T +E A + D V LK + L+AK L +SN +LV+++ K
Sbjct: 35 EATREQLEAELLRPPTYQEWATKIQPDMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAK 94
Query: 209 SFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRL 388
+ +G QDL EG+ GL + EK+D +GFRF TYA WWI+Q++ R++A+ GR +RL
Sbjct: 95 RYQHRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQSIMRAIADQGRTIRL 154
Query: 389 PMHMIEQLTRLKNLSAKLQTQLAR 460
P+H+ +Q+ L+ + +L+ +L R
Sbjct: 155 PVHIHDQINALRKVERELKAELGR 178
[114][TOP]
>UniRef100_Q46II1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46II1_PROMT
Length = 335
Score = 117 bits (293), Expect = 4e-25
Identities = 54/148 (36%), Positives = 92/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D + LE ++ + E L A + LK + +G +AKE ++ +N +LV+
Sbjct: 54 QDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRRAKERMVAANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++RLP+H+ E L +LK +L +L+R
Sbjct: 174 SIRLPIHITEMLNKLKKGQRELSQELSR 201
[115][TOP]
>UniRef100_Q3ANG0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ANG0_SYNSC
Length = 335
Score = 117 bits (293), Expect = 4e-25
Identities = 52/148 (35%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE ++ + + + +++A A + LK + G +AKE ++ +N +LV+
Sbjct: 54 QELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRRAKERMVAANLRLVV 113
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 114 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 173
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L +L R
Sbjct: 174 TIRLPIHITEMLNKLKKGQRELSQELGR 201
[116][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 117 bits (293), Expect = 4e-25
Identities = 55/152 (36%), Positives = 95/152 (62%), Gaps = 5/152 (3%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEI-----AAAVAMDVESLKLRYDAGLKAKELLLKSNY 184
D L LE+ + + + + EE+ A V M + + R G +AKE +++SN
Sbjct: 118 DLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMSLPEFRRRLHRGRRAKEKMVQSNL 177
Query: 185 KLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLA 364
+LV+++ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A
Sbjct: 178 RLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 237
Query: 365 ETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+ R +RLP+H+ E ++R+K ++ +L +L R
Sbjct: 238 DQSRTIRLPVHLYETISRIKKVTKQLSQELGR 269
[117][TOP]
>UniRef100_Q117X0 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q117X0_TRIEI
Length = 336
Score = 117 bits (293), Expect = 4e-25
Identities = 56/144 (38%), Positives = 94/144 (65%)
Frame = +2
Query: 29 FLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCK 208
FLE +K + E+ L+R AT E A + + + LK G +AK+ ++++N +LV+ + K
Sbjct: 60 FLE-LKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAK 118
Query: 209 SFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRL 388
+ + DL+ EG GL +GVEK+D T+G++F TYA+WWIRQA++R++A+ R +RL
Sbjct: 119 KYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRL 178
Query: 389 PMHMIEQLTRLKNLSAKLQTQLAR 460
P+H+ E+L ++K + +L L R
Sbjct: 179 PIHITEKLNKIKRVQRELIQSLGR 202
[118][TOP]
>UniRef100_A3PFB9 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PFB9_PROM0
Length = 344
Score = 117 bits (293), Expect = 4e-25
Identities = 50/148 (33%), Positives = 96/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + +E++ + + +K R AG +AKE ++ +N +LV+
Sbjct: 63 QEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRAGQRAKERMVAANLRLVV 122
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 123 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 182
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 183 AIRLPIHITEMLNKLKKGQRELSQEMSR 210
[119][TOP]
>UniRef100_B4VTM7 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VTM7_9CYAN
Length = 331
Score = 117 bits (293), Expect = 4e-25
Identities = 57/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LE+ K + L T E A A ++ L+ AG AK ++++N +LV++V K
Sbjct: 54 LEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKK 113
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RLP
Sbjct: 114 YIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLP 173
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L L R
Sbjct: 174 IHITEKLNKIKKAQRQLSQTLGR 196
[120][TOP]
>UniRef100_A0ZFS4 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZFS4_NODSP
Length = 332
Score = 117 bits (293), Expect = 4e-25
Identities = 56/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L +V+ + R + EE A A ++V L G AK ++++N +LV++V K
Sbjct: 56 LHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGETAKRKMVEANLRLVVSVAKK 115
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 116 YIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLP 175
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L QL R
Sbjct: 176 IHITEKLNKIKKAQRQLSQQLGR 198
[121][TOP]
>UniRef100_A0YY85 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YY85_9CYAN
Length = 331
Score = 117 bits (293), Expect = 4e-25
Identities = 52/142 (36%), Positives = 89/142 (62%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSF 214
++++ + L R S E+A A + L ++ G+ AK+ ++ SN +LV+++ K +
Sbjct: 53 KELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGIIAKQKMISSNLRLVVSIAKRY 112
Query: 215 VGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPM 394
+ +G DL+ EG GL + EK+D KG++F TYA+WWIRQ ++R++A GR VRLP+
Sbjct: 113 LNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTVRLPV 172
Query: 395 HMIEQLTRLKNLSAKLQTQLAR 460
H++EQL +L+ + L+ L R
Sbjct: 173 HVVEQLNKLQGIHQDLRRSLRR 194
[122][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 117 bits (293), Expect = 4e-25
Identities = 55/147 (37%), Positives = 92/147 (62%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L+LE++ Q E ++E AA V M + + R G +AK +++SN +LV++
Sbjct: 179 DLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVS 238
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 239 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 298
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 299 IRLPVHLYETISRIKKTTKVLSQEFGR 325
[123][TOP]
>UniRef100_B8HR54 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7425 RepID=B8HR54_CYAP4
Length = 318
Score = 117 bits (292), Expect = 5e-25
Identities = 57/144 (39%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 32 LEKVKRQCEKTL-HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCK 208
+++V+ + L H P +E AA + E L+ + G AK ++++N +LV++V K
Sbjct: 42 VQQVREELSDRLGHEPDLTEWATAAKLSEAE-LQGVVNRGELAKRKMVEANLRLVVSVAK 100
Query: 209 SFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRL 388
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE GR +RL
Sbjct: 101 KYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRL 160
Query: 389 PMHMIEQLTRLKNLSAKLQTQLAR 460
P+H+ E+L ++K +L QL R
Sbjct: 161 PIHITEKLNKIKKAQRQLSQQLGR 184
[124][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 117 bits (292), Expect = 5e-25
Identities = 55/147 (37%), Positives = 91/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E+ ++E A V M + R G +AKE +++SN +LV++
Sbjct: 188 DLLLLEELAGQFEQDNGHYPDNKEWAVLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVS 247
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 248 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 307
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 308 IRLPVHLYETISRIKKTTKVLSQEFGR 334
[125][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 117 bits (292), Expect = 5e-25
Identities = 55/132 (41%), Positives = 87/132 (65%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L LEKV+ + ++ + R T E + AV M+ +LR G AK+ L+ SN +LV+++
Sbjct: 298 LKLEKVRAELQRDMGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIV 357
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K++ G+G + DL+ G GL++G EK+D GF+F TYA WWIRQAV+RS+ + R +R
Sbjct: 358 KNYQGRGMTLPDLIQRGSLGLIRGAEKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIR 417
Query: 386 LPMHMIEQLTRL 421
LP+H+ E ++R+
Sbjct: 418 LPVHIYEVISRI 429
[126][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 116 bits (291), Expect = 7e-25
Identities = 58/155 (37%), Positives = 98/155 (63%), Gaps = 8/155 (5%)
Frame = +2
Query: 20 DFLFLEKVK-RQCEKTLHRPATSEEI-------AAAVAMDVESLKLRYDAGLKAKELLLK 175
D L +E+V+ R C++ T+EE+ A + M V + + R G KAKE +++
Sbjct: 132 DLLEMERVRDRLCQEL---GCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQ 188
Query: 176 SNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSR 355
SN +LV+++ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R
Sbjct: 189 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 248
Query: 356 SLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++A+ R +RLP+H+ E ++R+K + L ++ R
Sbjct: 249 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 283
[127][TOP]
>UniRef100_Q7UA00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7UA00_SYNPX
Length = 332
Score = 116 bits (291), Expect = 7e-25
Identities = 53/148 (35%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D + +E ++ + E + +++A A + LK + G +AKE ++ +N +LV+
Sbjct: 51 QDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRRAKERMVAANLRLVV 110
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 111 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 170
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L +L R
Sbjct: 171 TIRLPIHITEMLNKLKKGQRELSQELGR 198
[128][TOP]
>UniRef100_Q3B0L4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3B0L4_SYNS9
Length = 332
Score = 116 bits (291), Expect = 7e-25
Identities = 52/143 (36%), Positives = 89/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
+E ++ + E +++A A + LK + G +AKE ++ +N +LV++V K
Sbjct: 56 IETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHRAKERMVAANLRLVVSVAKK 115
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP
Sbjct: 116 YTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLP 175
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E L +LK +L +L R
Sbjct: 176 IHITEMLNKLKKGQRELSQELGR 198
[129][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 116 bits (291), Expect = 7e-25
Identities = 55/147 (37%), Positives = 91/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E+ + + E A V M + R G +AKE +++SN +LV++
Sbjct: 120 DLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVS 179
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 180 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 239
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 240 IRLPVHLYETISRIKKTTKVLSQEFGR 266
[130][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 116 bits (291), Expect = 7e-25
Identities = 55/147 (37%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q ++E AA V M + R G +AKE +++SN +LV++
Sbjct: 163 DLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVS 222
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 223 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 282
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 283 IRLPVHLYETISRIKKTTKVLSQEFGR 309
[131][TOP]
>UniRef100_Q062S3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q062S3_9SYNE
Length = 332
Score = 116 bits (291), Expect = 7e-25
Identities = 52/143 (36%), Positives = 89/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
+E ++ + E +++A A + LK + G +AKE ++ +N +LV++V K
Sbjct: 56 IETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHRAKERMVAANLRLVVSVAKK 115
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP
Sbjct: 116 YTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLP 175
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E L +LK +L +L R
Sbjct: 176 IHITEMLNKLKKGQRELSQELGR 198
[132][TOP]
>UniRef100_A3Z1L6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3Z1L6_9SYNE
Length = 330
Score = 116 bits (291), Expect = 7e-25
Identities = 54/149 (36%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQCE-KTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE+ +++ E + + ++ E A+A + LK + +G +AKE ++ +N +LV
Sbjct: 48 QELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLV 107
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 108 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 167
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 168 RTIRLPIHITETLNKLKKGQRELSQELGR 196
[133][TOP]
>UniRef100_A3YWT8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YWT8_9SYNE
Length = 349
Score = 116 bits (291), Expect = 7e-25
Identities = 54/149 (36%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Frame = +2
Query: 17 RDFLFLEKVKRQCE-KTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLV 193
++ + LE+ +++ E + + ++ E A+A + LK + +G +AKE ++ +N +LV
Sbjct: 64 QELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLV 123
Query: 194 MTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETG 373
++V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE
Sbjct: 124 VSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKS 183
Query: 374 RAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
R +RLP+H+ E L +LK +L +L R
Sbjct: 184 RTIRLPIHITETLNKLKKGQRELSQELGR 212
[134][TOP]
>UniRef100_Q8DKM8 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DKM8_THEEB
Length = 309
Score = 116 bits (290), Expect = 9e-25
Identities = 57/148 (38%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+ + L + + K L R AT EE AAA + L G +AK+ ++++N +LV+
Sbjct: 28 QQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGERAKQKMIEANLRLVV 87
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DLV EG GL +GVEK+D T+G++F TYA+WWIRQA++R++A+ R
Sbjct: 88 SVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQAR 147
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E+L ++K +L +L R
Sbjct: 148 TIRLPIHITEKLNKIKRTQRELAQKLGR 175
[135][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 116 bits (290), Expect = 9e-25
Identities = 55/152 (36%), Positives = 94/152 (61%), Gaps = 5/152 (3%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEI-----AAAVAMDVESLKLRYDAGLKAKELLLKSNY 184
D L LE+ + + + + EE+ A V M + + R G +AKE +++SN
Sbjct: 117 DLLELERAREAVFQRMGLWSDPEEVPDTLWAEEVKMSLPEFRRRLHRGRRAKEKMVQSNL 176
Query: 185 KLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLA 364
+LV+++ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A
Sbjct: 177 RLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 236
Query: 365 ETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+ R +RLP+H+ E ++R+K ++ L +L R
Sbjct: 237 DQSRTIRLPVHLYETISRIKKVTKLLSQELGR 268
[136][TOP]
>UniRef100_B8HQG4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HQG4_CYAP4
Length = 327
Score = 116 bits (290), Expect = 9e-25
Identities = 54/143 (37%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L + + + +L R T+EE A + V L G +AK+ ++++N +LV++V K
Sbjct: 51 LLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + + DL+ EG GL +GVEK+D T+G++F TYA+WWIRQA++R++A+ R VRLP
Sbjct: 111 YQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTVRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K L +L R
Sbjct: 171 IHITEKLNKIKKAQRVLSQRLGR 193
[137][TOP]
>UniRef100_A5GQ42 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GQ42_SYNR3
Length = 324
Score = 116 bits (290), Expect = 9e-25
Identities = 53/148 (35%), Positives = 94/148 (63%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + LE+ + + + + EE+A++ + L+ R G +AKE ++ +N +LV+
Sbjct: 43 QELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVV 102
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D T+G++F TYA+WWIRQ ++R++AE R
Sbjct: 103 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSR 162
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E L +LK +L +L R
Sbjct: 163 TIRLPIHITETLNKLKKGQRELSQELGR 190
[138][TOP]
>UniRef100_B9NYX2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9NYX2_PROMA
Length = 333
Score = 116 bits (290), Expect = 9e-25
Identities = 50/148 (33%), Positives = 96/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + +E++ + + +K R AG +AKE ++ +N +LV+
Sbjct: 52 QEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRAGQRAKERMVAANLRLVV 111
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 112 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 171
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 172 AIRLPIHITEMLNKLKKGQRELSQEMSR 199
[139][TOP]
>UniRef100_A3IUR2 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IUR2_9CHRO
Length = 369
Score = 116 bits (290), Expect = 9e-25
Identities = 53/143 (37%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVES-LKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ ++Q + L RP T E A+ + + + R G AK +++SN +LV+++ K
Sbjct: 90 EETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGRTAKRKMIRSNLRLVVSIAKR 149
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 150 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 209
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ +L R
Sbjct: 210 IHVVEKLNKLKKAQRVLKQKLQR 232
[140][TOP]
>UniRef100_C8XG81 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Nakamurella multipartita DSM 44233
RepID=C8XG81_9ACTO
Length = 334
Score = 115 bits (289), Expect = 1e-24
Identities = 52/114 (45%), Positives = 80/114 (70%)
Frame = +2
Query: 119 ESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDAT 298
+ L++ G +A+ LL +N +LV+++ K + G+G + DL+ EG GL++ VEK+D T
Sbjct: 85 KDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 144
Query: 299 KGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
KGF+F TYA WWIRQA+SR +A+ GR +RLP+H++EQ+ +L L +L QL R
Sbjct: 145 KGFKFSTYATWWIRQAISRGMADQGRTIRLPVHLVEQVNKLSRLKRELHQQLGR 198
[141][TOP]
>UniRef100_Q3MDZ8 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MDZ8_ANAVT
Length = 416
Score = 115 bits (289), Expect = 1e-24
Identities = 52/122 (42%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A M VE L+ GL++KE ++K+N +LV++V K + +G + DLV EG GL +
Sbjct: 157 AEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 216
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D TKG+RF TYA+WWIRQ ++R++A + R +RLP+H+ E+L ++K K+ +
Sbjct: 217 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEK 276
Query: 455 AR 460
R
Sbjct: 277 GR 278
[142][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 115 bits (289), Expect = 1e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 112 DLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVS 171
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 172 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 231
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 232 IRLPVHLYETISRIKKTTKVLSQEFGR 258
[143][TOP]
>UniRef100_B2J5S6 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J5S6_NOSP7
Length = 378
Score = 115 bits (289), Expect = 1e-24
Identities = 56/153 (36%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Frame = +2
Query: 11 VCRDFLFLEKVKR---QCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSN 181
+ R FLE+++ L + T EIA+ + M + L+ R G AK +++SN
Sbjct: 89 LARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRVAKRKMIRSN 148
Query: 182 YKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSL 361
+LV+++ K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++
Sbjct: 149 LRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAI 208
Query: 362 AETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A R +RLP+H++E+L +LK +L+ +L R
Sbjct: 209 ANDARTIRLPIHIVEKLNKLKKAQRELKQKLCR 241
[144][TOP]
>UniRef100_A8G7D5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G7D5_PROM2
Length = 344
Score = 115 bits (289), Expect = 1e-24
Identities = 50/148 (33%), Positives = 96/148 (64%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++++ +E+ + + + + +E++ + + +K R AG +AKE ++ +N +LV+
Sbjct: 63 QEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQRAKERMVAANLRLVV 122
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K + + + DL+ EG GL++GVEK+D +G++F TYA+WWIRQ ++R++AE R
Sbjct: 123 SVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSR 182
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
A+RLP+H+ E L +LK +L +++R
Sbjct: 183 AIRLPIHITEMLNKLKKGQRELSQEMSR 210
[145][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 115 bits (289), Expect = 1e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 112 DLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVS 171
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 172 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 231
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 232 IRLPVHLYETISRIKKTTKVLSQEFGR 258
[146][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 115 bits (289), Expect = 1e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 116 DLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVS 175
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 176 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 235
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 236 IRLPVHLYETISRIKKTTKVLSQEFGR 262
[147][TOP]
>UniRef100_Q9FD90 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus
RepID=Q9FD90_SYNEL
Length = 398
Score = 115 bits (289), Expect = 1e-24
Identities = 56/137 (40%), Positives = 88/137 (64%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L ++++ + LHR A +D+E LK G +AK+ ++K+N +LV++V K
Sbjct: 124 LTELRQALQLGLHR------WAEVCQLDLEELKQVCKEGQRAKDHMIKANLRLVVSVAKK 177
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ +G + DLV EG GL + VEK+D TKG+RF TYA+WWIRQ ++R++A R +RLP
Sbjct: 178 YQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLP 237
Query: 392 MHMIEQLTRLKNLSAKL 442
+H+ E+LTR+K K+
Sbjct: 238 VHVTEKLTRIKKAQRKI 254
[148][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 115 bits (289), Expect = 1e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 112 DLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVS 171
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 172 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 231
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 232 IRLPVHLYETISRIKKTTKVLSQEFGR 258
[149][TOP]
>UniRef100_Q03066 RNA polymerase sigma-C factor n=1 Tax=Nostoc sp. PCC 7120
RepID=RPSC_ANASP
Length = 416
Score = 115 bits (289), Expect = 1e-24
Identities = 52/122 (42%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A M VE L+ GL++KE ++K+N +LV++V K + +G + DLV EG GL +
Sbjct: 157 AEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 216
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D TKG+RF TYA+WWIRQ ++R++A + R +RLP+H+ E+L ++K K+ +
Sbjct: 217 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEK 276
Query: 455 AR 460
R
Sbjct: 277 GR 278
[150][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 115 bits (288), Expect = 2e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q ++E A+ V M + R G +AKE +++SN +LV++
Sbjct: 180 DLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVS 239
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 240 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 299
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 300 IRLPVHLYETISRIKKTTKVLSQEFGR 326
[151][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 115 bits (288), Expect = 2e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 113 DLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFRRRLLLGRRAKEKMVQSNLRLVVS 172
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 173 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 232
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 233 IRLPVHLYETISRIKKTTKVLSQEFGR 259
[152][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 115 bits (288), Expect = 2e-24
Identities = 54/147 (36%), Positives = 90/147 (61%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A + M + + R G +AKE +++SN +LV++
Sbjct: 113 DLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFRRRLLLGRRAKEKMVQSNLRLVVS 172
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 173 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 232
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 233 IRLPVHLYETISRIKKTTKVLSQEFGR 259
[153][TOP]
>UniRef100_Q05XW0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05XW0_9SYNE
Length = 321
Score = 115 bits (288), Expect = 2e-24
Identities = 51/125 (40%), Positives = 82/125 (65%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
E +A + LK + AG +AKE ++ +N +LV++V K + + + DL+ EG G
Sbjct: 63 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 122
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 123 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELS 182
Query: 446 TQLAR 460
+L R
Sbjct: 183 QELGR 187
[154][TOP]
>UniRef100_Q05UJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05UJ7_9SYNE
Length = 341
Score = 115 bits (288), Expect = 2e-24
Identities = 51/125 (40%), Positives = 82/125 (65%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
E +A + LK + AG +AKE ++ +N +LV++V K + + + DL+ EG G
Sbjct: 83 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 142
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L++GVEK+D T+G++F TYA+WWIRQ ++R++AE R +RLP+H+ E L +LK +L
Sbjct: 143 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELS 202
Query: 446 TQLAR 460
+L R
Sbjct: 203 QELGR 207
[155][TOP]
>UniRef100_C7MNW8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Cryptobacterium
curtum DSM 15641 RepID=C7MNW8_CRYCD
Length = 422
Score = 115 bits (288), Expect = 2e-24
Identities = 55/133 (41%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYD--------AGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQD 241
E++ AA A + E L R GL AK+ L+++N +LV+++ K +VG+G D
Sbjct: 153 EQLEAAEADNAEELSRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLD 212
Query: 242 LVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRL 421
L+ EG GL++ VEK+D TKGF+F TYA WWIRQA++R++A+ R +R+P+HM+E + +L
Sbjct: 213 LIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 272
Query: 422 KNLSAKLQTQLAR 460
+ +L +L R
Sbjct: 273 VRIQRQLLQELGR 285
[156][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 115 bits (288), Expect = 2e-24
Identities = 55/145 (37%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAM--DVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
LE+ +R + + T E A DVE L+ G KAKE ++ +N +LV+++
Sbjct: 309 LEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIA 368
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K + +G +QDL+ EG GL++GVEK+DA +GFRF TYA WWIRQ+++R+++++ R++R
Sbjct: 369 KRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIR 428
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
LP+H+ + ++ ++ + LQ +L R
Sbjct: 429 LPVHVHDTISLIRKQTKALQVELGR 453
[157][TOP]
>UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=Q55525_SYNY3
Length = 345
Score = 115 bits (287), Expect = 2e-24
Identities = 54/139 (38%), Positives = 85/139 (61%)
Frame = +2
Query: 44 KRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGK 223
K+ L R + E A A + V L G +AK ++++N +LV+ + K + +
Sbjct: 72 KKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKR 131
Query: 224 GPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMI 403
DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ GR +RLP+H+
Sbjct: 132 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHIT 191
Query: 404 EQLTRLKNLSAKLQTQLAR 460
E+L ++K +L QL R
Sbjct: 192 EKLNKIKKTQRELSQQLGR 210
[158][TOP]
>UniRef100_Q3MBX2 Sigma 28 (Flagella/Sporulation) n=1 Tax=Anabaena variabilis ATCC
29413 RepID=Q3MBX2_ANAVT
Length = 332
Score = 115 bits (287), Expect = 2e-24
Identities = 55/143 (38%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++V+ + L R + EE A A ++ L G AK ++++N +LV++V K
Sbjct: 56 LQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEVAKRKMVEANLRLVVSVAKK 115
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 116 YIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLP 175
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L +L R
Sbjct: 176 IHITEKLNKIKKAQRQLSQRLGR 198
[159][TOP]
>UniRef100_B2IZR4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZR4_NOSP7
Length = 339
Score = 115 bits (287), Expect = 2e-24
Identities = 52/131 (39%), Positives = 86/131 (65%)
Frame = +2
Query: 68 HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
H P T +E A V + E L+L+ G +AK+ ++++N +LV+ V K + + DL+
Sbjct: 76 HEP-TLQEWADRVELGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLI 134
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL +GV+K+D G++F TYA+WWIRQ ++R++A+ GR +RLP+H+ E+L ++K
Sbjct: 135 QEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLNKIKR 194
Query: 428 LSAKLQTQLAR 460
+ +L QL R
Sbjct: 195 VQRELSQQLGR 205
[160][TOP]
>UniRef100_B2IV51 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IV51_NOSP7
Length = 416
Score = 115 bits (287), Expect = 2e-24
Identities = 52/122 (42%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A + VE L+ GL+AKE ++K+N +LV++V K + +G + DLV EG GL +
Sbjct: 157 AEIAKLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 216
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D TKG+RF TYA+WWIRQ ++R++A + R +RLP+H+ E+L ++K K+ +
Sbjct: 217 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEK 276
Query: 455 AR 460
R
Sbjct: 277 GR 278
[161][TOP]
>UniRef100_B1X0Q3 Group 2 sigma-70 RNA polymerase sigma factor D n=1 Tax=Cyanothece
sp. ATCC 51142 RepID=B1X0Q3_CYAA5
Length = 318
Score = 115 bits (287), Expect = 2e-24
Identities = 52/143 (36%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK++ + + + T + A A + + ++G AK ++++N +LV++V K
Sbjct: 42 LEKLREEIIEETGQEPTESQWAKAAKLSKREFRSIVESGEAAKRKMVEANLRLVVSVAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 102 YLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L Q R
Sbjct: 162 IHITEKLNKIKKAQRELSQQKGR 184
[162][TOP]
>UniRef100_Q4C529 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C529_CROWT
Length = 318
Score = 115 bits (287), Expect = 2e-24
Identities = 53/143 (37%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK++ + + + T+ + A A + + +AG AK ++++N +LV++V K
Sbjct: 42 LEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 102 YLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L Q R
Sbjct: 162 IHITEKLNKIKKAQRELSQQKGR 184
[163][TOP]
>UniRef100_B9YR14 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708
RepID=B9YR14_ANAAZ
Length = 417
Score = 115 bits (287), Expect = 2e-24
Identities = 52/122 (42%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A + VE L+ GL+AKE ++K+N +LV++V K + +G + DLV EG GL +
Sbjct: 158 AEIAKLKVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 217
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D TKG+RF TYA+WWIRQ ++R++A + R +RLP+H+ E+L ++K K+ +
Sbjct: 218 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEK 277
Query: 455 AR 460
R
Sbjct: 278 GR 279
[164][TOP]
>UniRef100_A0ZIW0 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZIW0_NODSP
Length = 442
Score = 115 bits (287), Expect = 2e-24
Identities = 52/122 (42%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A + VE L+ GL+AKE ++K+N +LV++V K + +G + DLV EG GL +
Sbjct: 183 AEIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLER 242
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D TKG+RF TYA+WWIRQ ++R++A + R +RLP+H+ E+L ++K K+ +
Sbjct: 243 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEK 302
Query: 455 AR 460
R
Sbjct: 303 GR 304
[165][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 115 bits (287), Expect = 2e-24
Identities = 49/98 (50%), Positives = 74/98 (75%)
Frame = +2
Query: 167 LLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQA 346
++KSN +LV+++ K++ G G +IQDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QA
Sbjct: 1 MIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 60
Query: 347 VSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
V +SL++ R +RLP HM+E R+K +L ++ R
Sbjct: 61 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 98
[166][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 114 bits (286), Expect = 3e-24
Identities = 54/147 (36%), Positives = 89/147 (60%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE++ Q E + E A M + + R G +AKE +++SN +LV++
Sbjct: 115 DLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVS 174
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 175 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 234
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 235 IRLPVHLYETISRIKKTTKVLSQEFGR 261
[167][TOP]
>UniRef100_B2J979 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2J979_NOSP7
Length = 332
Score = 114 bits (286), Expect = 3e-24
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 11/158 (6%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLH-----------RPATSEEIAAAVAMDVESLKLRYDAGLKAKEL 166
+ + ++V+R C TLH R T EE A A ++ L G AK
Sbjct: 43 EIFYGKQVQRSC--TLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEIAKRK 100
Query: 167 LLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQA 346
++++N +LV++V K ++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA
Sbjct: 101 MVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 160
Query: 347 VSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++R++AE R +RLP+H+ E+L ++K +L +L R
Sbjct: 161 ITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGR 198
[168][TOP]
>UniRef100_B0BZB6 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0BZB6_ACAM1
Length = 318
Score = 114 bits (286), Expect = 3e-24
Identities = 56/146 (38%), Positives = 91/146 (62%)
Frame = +2
Query: 23 FLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTV 202
F+ L+ +K+ ++ L R T E A + V L+ G KA +++SN +LV+++
Sbjct: 39 FVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHKANRKMVESNLRLVVSI 98
Query: 203 CKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAV 382
K + DL+ EG GL +GVEK+D KG+RF TYA+WWIRQA++R++AE R +
Sbjct: 99 AKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWWIRQAMTRAIAEQERTI 158
Query: 383 RLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP+H+ E+L++L+ + +L +L R
Sbjct: 159 RLPIHINEKLSKLRKVRRQLSQKLHR 184
[169][TOP]
>UniRef100_B5W322 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5W322_SPIMA
Length = 407
Score = 114 bits (286), Expect = 3e-24
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 22/172 (12%)
Frame = +2
Query: 11 VCRDFLFLEKVK-RQCEKTLHRPATSEEIAAA---------------------VAMDVES 124
V + ++ L KV+ R C K HRP+ AA + VE
Sbjct: 98 VLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAELANLSVEE 157
Query: 125 LKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKG 304
LK GL+AK+ ++K+N +LV++V K + +G + DL+ EG GL + VEK+D T+G
Sbjct: 158 LKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRG 217
Query: 305 FRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RF TY++WWIRQ ++R++A R +RLP+H+ E+L ++K K+ + +R
Sbjct: 218 YRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSR 269
[170][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
Length = 298
Score = 114 bits (286), Expect = 3e-24
Identities = 54/133 (40%), Positives = 85/133 (63%)
Frame = +2
Query: 62 TLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQD 241
TL R T E AAA + L AG +AK ++++N +LV++V K ++ + + D
Sbjct: 32 TLDREPTRTEWAAAGGISEAELAAIVTAGEQAKHRMVEANLRLVVSVAKKYIKRNVDLLD 91
Query: 242 LVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRL 421
L+ EG G+ +GVEK+D +KG+RF TYA+WWIRQA++R++AE R +RLP+H+ E+L ++
Sbjct: 92 LIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 151
Query: 422 KNLSAKLQTQLAR 460
K + Q R
Sbjct: 152 KKAQRQFTQQHGR 164
[171][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 114 bits (286), Expect = 3e-24
Identities = 50/143 (34%), Positives = 92/143 (64%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
++++ + + L R T+ E+A A+ + + R G +K +++SN +LV+++ K
Sbjct: 95 MDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMIRSNLRLVVSIAKR 154
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 155 YLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWWIRQAITRTIANDARTIRLP 214
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK + +L+ +L R
Sbjct: 215 IHIVEKLNKLKKVQRELKQKLQR 237
[172][TOP]
>UniRef100_B4AZF8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AZF8_9CHRO
Length = 343
Score = 114 bits (286), Expect = 3e-24
Identities = 55/143 (38%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ +++ + L RP + E A A+ + E L+ R G AK +++SN +LV+++ K
Sbjct: 64 EEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGRAAKRKMIRSNLRLVVSIAKR 123
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 124 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 183
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ QL R
Sbjct: 184 IHIVEKLNKLKKAQRVLKQQLHR 206
[173][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 114 bits (286), Expect = 3e-24
Identities = 45/136 (33%), Positives = 93/136 (68%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D + L++++ + ++ + T + A + +D ++LK+R + G + + ++ N +LV+
Sbjct: 211 QDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVI 270
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K++ +G +QDL+ G GL++ EK+D ++GF+F TYA+WWIRQ+++++L E R
Sbjct: 271 SVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSR 330
Query: 377 AVRLPMHMIEQLTRLK 424
+RLP+H++E +TR++
Sbjct: 331 TIRLPVHIVESMTRIR 346
[174][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 114 bits (286), Expect = 3e-24
Identities = 45/136 (33%), Positives = 93/136 (68%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D + L++++ + ++ + T + A + +D ++LK+R + G + + ++ N +LV+
Sbjct: 308 QDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVI 367
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+V K++ +G +QDL+ G GL++ EK+D ++GF+F TYA+WWIRQ+++++L E R
Sbjct: 368 SVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSR 427
Query: 377 AVRLPMHMIEQLTRLK 424
+RLP+H++E +TR++
Sbjct: 428 TIRLPVHIVESMTRIR 443
[175][TOP]
>UniRef100_Q10WG0 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10WG0_TRIEI
Length = 384
Score = 114 bits (285), Expect = 3e-24
Identities = 52/148 (35%), Positives = 86/148 (58%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
++ + EK+ + L R T E+A A L R AK ++ SN +LV+
Sbjct: 98 QELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVV 157
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQ ++R++A GR
Sbjct: 158 SIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGR 217
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H++EQ+ +L+ + L+ L R
Sbjct: 218 TIRLPVHVVEQINKLRRVYRDLRRSLNR 245
[176][TOP]
>UniRef100_P73666 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=P73666_SYNY3
Length = 318
Score = 114 bits (285), Expect = 3e-24
Identities = 50/129 (38%), Positives = 84/129 (65%)
Frame = +2
Query: 74 PATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSE 253
P + E A A + + L+ G +AK ++++N +LV++V K ++ + + DL+ E
Sbjct: 56 PVSPSEWAKAADLSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQE 115
Query: 254 GVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLS 433
G G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP+H+ E+L ++K
Sbjct: 116 GTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQ 175
Query: 434 AKLQTQLAR 460
+L + R
Sbjct: 176 RQLSQEKGR 184
[177][TOP]
>UniRef100_B0CFS6 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0CFS6_ACAM1
Length = 318
Score = 114 bits (285), Expect = 3e-24
Identities = 55/143 (38%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L+++K++ + L R T +E A + V L+ G KA +++SN +LV+++ K
Sbjct: 42 LQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKLGHKANRKMVESNLRLVVSIAKK 101
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ DL+ EG GL +GVEK+D KG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 102 YNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWWIRQAMTRAIAEQERTIRLP 161
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L++L+ + +L +L R
Sbjct: 162 IHINEKLSKLRKVRRQLSQKLHR 184
[178][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 114 bits (285), Expect = 3e-24
Identities = 49/108 (45%), Positives = 76/108 (70%)
Frame = +2
Query: 137 YDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFG 316
Y GL+A+ +L+ +N +LV+++ K +VG+G DL+ EG GL+K VEK+D TKGF+F
Sbjct: 213 YYDGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFS 272
Query: 317 TYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
TYA WWIRQA++R++A+ R +R+P+HM+E + +L + L L R
Sbjct: 273 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGR 320
[179][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 114 bits (285), Expect = 3e-24
Identities = 53/126 (42%), Positives = 85/126 (67%)
Frame = +2
Query: 83 SEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVK 262
SEE + ++ LK G +AK+ L ++N +LV+++ K +VG+G DL+ EG
Sbjct: 353 SEEDMMNLEAQIKILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 412
Query: 263 GLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKL 442
GL+K VEK+D TKG++F TYA WWIRQA++R++A+ R +R+P+HM+E + +L +S +L
Sbjct: 413 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 472
Query: 443 QTQLAR 460
+L R
Sbjct: 473 LQELGR 478
[180][TOP]
>UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AVJ3_9CHRO
Length = 328
Score = 114 bits (285), Expect = 3e-24
Identities = 57/143 (39%), Positives = 87/143 (60%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK K + L R + E A V M E L G +AK ++++N +LV+ + K
Sbjct: 52 LEK-KDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ R +RLP
Sbjct: 111 YQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L QL R
Sbjct: 171 IHITEKLNKIKKTQRELSQQLGR 193
[181][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 114 bits (285), Expect = 3e-24
Identities = 55/140 (39%), Positives = 90/140 (64%)
Frame = +2
Query: 41 VKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVG 220
+KR+ EK + E V +E + + +KAK+++++SN +LV+++ K +V
Sbjct: 299 LKREVEKLRNEIGVIPEEIKRVMGIIEQGRKKV---VKAKQVMIQSNLRLVVSIAKKYVN 355
Query: 221 KGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHM 400
+G H DL+ EG GL+K V+KYD KG++F TYA WWIRQA++R++A+ R +R+P+HM
Sbjct: 356 RGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHM 415
Query: 401 IEQLTRLKNLSAKLQTQLAR 460
IE + R+ S +L +L R
Sbjct: 416 IETINRIIKASKRLFQELGR 435
[182][TOP]
>UniRef100_A5Z979 RNA polymerase sigma factor n=1 Tax=Eubacterium ventriosum ATCC
27560 RepID=A5Z979_9FIRM
Length = 429
Score = 114 bits (285), Expect = 3e-24
Identities = 50/114 (43%), Positives = 80/114 (70%)
Frame = +2
Query: 113 DVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYD 292
++E K + + + AKE L+++N +LV+++ K + G+G DLV EG GL+KGVEK+D
Sbjct: 177 ELELAKRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFD 236
Query: 293 ATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
TKG++ TYA WWIRQ+V+R+LA+ R +R+P+HM+E + R+ + KL +L
Sbjct: 237 YTKGYKLSTYATWWIRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLEL 290
[183][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 114 bits (284), Expect = 4e-24
Identities = 48/99 (48%), Positives = 76/99 (76%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G KAK+ L ++N +LV+++ K +VG+G DL+ EG GL+K VEK+D TKGF+F TYA
Sbjct: 124 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 183
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKL 442
WWIRQA++R++A+ R +R+P+HM+E + ++K +S++L
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQL 222
[184][TOP]
>UniRef100_Q3AVS8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AVS8_SYNS9
Length = 377
Score = 114 bits (284), Expect = 4e-24
Identities = 53/125 (42%), Positives = 82/125 (65%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
E A A+D + LKL G +AK+ ++++N +LV+ V K + +G I DLV EG G
Sbjct: 114 EAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLG 173
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L + VEK+D T+GFRF TYA+WWIRQ ++R++A R +RLP+H+ E+L R+K + ++
Sbjct: 174 LERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRVQQEIA 233
Query: 446 TQLAR 460
+ R
Sbjct: 234 SNEGR 238
[185][TOP]
>UniRef100_Q31M40 RNA polymerase sigma factor n=2 Tax=Synechococcus elongatus
RepID=Q31M40_SYNE7
Length = 398
Score = 114 bits (284), Expect = 4e-24
Identities = 55/137 (40%), Positives = 87/137 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L ++++ + LHR A +D+E LK G +AK+ ++K+N +LV++V K
Sbjct: 124 LTELRQALQLGLHR------WAEVCQLDLEELKQVCKEGQRAKDHMIKANLRLVVSVAKK 177
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ +G + DLV EG GL + VEK+D TKG+RF TYA+WWIRQ ++R++A R +RLP
Sbjct: 178 YQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLP 237
Query: 392 MHMIEQLTRLKNLSAKL 442
+H+ E+L R+K K+
Sbjct: 238 VHVTEKLNRIKKAQRKI 254
[186][TOP]
>UniRef100_B4WMN7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WMN7_9SYNE
Length = 467
Score = 114 bits (284), Expect = 4e-24
Identities = 51/143 (35%), Positives = 86/143 (60%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
+E + +TL R T E+A A L+ + AK +++SN +LV+++ K
Sbjct: 188 IEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARAAKRRMIRSNLRLVVSIAKR 247
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQ ++R++A R +RLP
Sbjct: 248 YLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLP 307
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK +L+ +L R
Sbjct: 308 IHIVEKLNKLKKAQRELRKELQR 330
[187][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 114 bits (284), Expect = 4e-24
Identities = 54/143 (37%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Frame = +2
Query: 17 RDFLFLEKVKRQC-EKTLHRPATSE-EIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKL 190
+D + LE ++ E+T SE + AAA ++V +L+ R G AK ++++N +L
Sbjct: 229 QDLMHLESIRENLIEETGPGVELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRL 288
Query: 191 VMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAET 370
V+++ K + QDL+ EG GL++G EK+D +G++F TYAHWWIRQAV+RS+++
Sbjct: 289 VVSIAKKYANTNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQ 348
Query: 371 GRAVRLPMHMIEQLTRLKNLSAK 439
R +RLP+H+ E ++R+ + K
Sbjct: 349 SRTIRLPVHLFEIISRISKMEQK 371
[188][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 114 bits (284), Expect = 4e-24
Identities = 49/135 (36%), Positives = 86/135 (63%)
Frame = +2
Query: 56 EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHI 235
EK P +SE AA DV+ + +AKE ++ +N +LV+++ K +V +G +
Sbjct: 172 EKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSL 231
Query: 236 QDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLT 415
QDL+ EG GL++ EK+D+ KGF+F TYA WW++QAV+R++A+ R +RLP+H+ + ++
Sbjct: 232 QDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTIS 291
Query: 416 RLKNLSAKLQTQLAR 460
++ + L ++ R
Sbjct: 292 AIRKTTRTLNIEIGR 306
[189][TOP]
>UniRef100_Q8ZSA3 RNA polymerase sigma factor n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8ZSA3_ANASP
Length = 323
Score = 113 bits (283), Expect = 6e-24
Identities = 50/148 (33%), Positives = 93/148 (62%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+ + L+K K +K L+ + +E+A V + +K + G +AK+ ++ +N +LV+
Sbjct: 41 QQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQGTQAKQKMMVANLRLVV 100
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+ K + + + DL+ EG GL +GVEK+D T+G++F TYA+WWI QA++R++++ R
Sbjct: 101 AIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPTRGYKFSTYAYWWISQAMTRAISQQSR 160
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E+L + K + +L +L R
Sbjct: 161 TIRLPIHITEKLNKFKKVQRELSQKLKR 188
[190][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 113 bits (283), Expect = 6e-24
Identities = 48/105 (45%), Positives = 76/105 (72%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G +AK L+K+N +LV++V K + G+G H+ DL+ EG GL++ EK+D T+GF+F TYA
Sbjct: 106 GERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTRGFKFSTYA 165
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQ ++R++A R +RLP+H++E++ R+K + +L QL R
Sbjct: 166 TWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGR 210
[191][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 113 bits (283), Expect = 6e-24
Identities = 54/131 (41%), Positives = 86/131 (65%)
Frame = +2
Query: 68 HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
H TS+ ++AA D L + G A+ LL++N +LV+++ K + G+G + DL+
Sbjct: 59 HLLETSKRLSAAKKKD---LAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLI 115
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL++ +EK+D TKGF+F TYA WWIRQA++R +A+ R +RLP+H++EQ+ +L
Sbjct: 116 QEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLAR 175
Query: 428 LSAKLQTQLAR 460
+ +L QL R
Sbjct: 176 IKRELHQQLGR 186
[192][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 113 bits (283), Expect = 6e-24
Identities = 54/147 (36%), Positives = 89/147 (60%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+ Q E + +E A M + + R G +AKE +++SN +LV++
Sbjct: 137 DLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVS 196
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 197 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 256
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 257 IRLPVHLYETISRIKKTTKVLSQEFGR 283
[193][TOP]
>UniRef100_Q3MDW4 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MDW4_ANAVT
Length = 378
Score = 113 bits (283), Expect = 6e-24
Identities = 56/155 (36%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Frame = +2
Query: 11 VCRDFLFLEKVKR-----QCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLK 175
+ R FLE+V+ Q + LH T ++AA + + + L+ R G AK +++
Sbjct: 89 LARRVRFLEEVRDLQADLQLQLGLH--PTKAQVAAQLEITEKQLENRLYQGRVAKRKMIR 146
Query: 176 SNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSR 355
SN +LV+++ K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R
Sbjct: 147 SNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITR 206
Query: 356 SLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++A R +RLP+H++E+L +LK +L+ + +R
Sbjct: 207 AIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSR 241
[194][TOP]
>UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K8N4_CYAP7
Length = 328
Score = 113 bits (283), Expect = 6e-24
Identities = 57/143 (39%), Positives = 86/143 (60%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LEK K Q L + E A V M E L G +AK ++++N +LV+ + K
Sbjct: 52 LEK-KDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ R +RLP
Sbjct: 111 YQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L QL R
Sbjct: 171 IHITEKLNKIKKTQRELSQQLGR 193
[195][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZW2_NOSP7
Length = 332
Score = 113 bits (283), Expect = 6e-24
Identities = 52/132 (39%), Positives = 86/132 (65%)
Frame = +2
Query: 65 LHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDL 244
L R T +E + + +SL + G KAK+ ++++N +LV+++ K + DL
Sbjct: 67 LKRQPTQKEWIENINIGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDL 126
Query: 245 VSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLK 424
+ EG GL +GVEK+D TKG++F TY +WWIRQA++R++AE GR +RLP+H+ E+L ++K
Sbjct: 127 IQEGSLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIK 186
Query: 425 NLSAKLQTQLAR 460
+ +L +L R
Sbjct: 187 RIQRELTQKLGR 198
[196][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 113 bits (283), Expect = 6e-24
Identities = 54/147 (36%), Positives = 89/147 (60%)
Frame = +2
Query: 20 DFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMT 199
D L LE+ Q E + +E A M + + R G +AKE +++SN +LV++
Sbjct: 137 DLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVS 196
Query: 200 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 379
+ K ++ +G QDL+ EG GL++ EK+D KG++F TYA WWIRQA++R++A+ R
Sbjct: 197 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 256
Query: 380 VRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E ++R+K + L + R
Sbjct: 257 IRLPVHLYETISRIKKTTKVLSQEFGR 283
[197][TOP]
>UniRef100_Q4BYC5 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BYC5_CROWT
Length = 328
Score = 113 bits (283), Expect = 6e-24
Identities = 53/144 (36%), Positives = 92/144 (63%)
Frame = +2
Query: 29 FLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCK 208
FLEK + +K L + T +E + + ++ ++L + G +AK ++++N +LV+ + K
Sbjct: 51 FLEKKEELADK-LGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAK 109
Query: 209 SFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRL 388
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ R +RL
Sbjct: 110 KYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRL 169
Query: 389 PMHMIEQLTRLKNLSAKLQTQLAR 460
P+H+ E+L ++K +L L R
Sbjct: 170 PIHITEKLNKIKKTQRELSQTLGR 193
[198][TOP]
>UniRef100_Q4BWZ3 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BWZ3_CROWT
Length = 374
Score = 113 bits (283), Expect = 6e-24
Identities = 53/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDV-ESLKLRYDAGLKAKELLLKSNYKLVMTV 202
L +E+ K++ ++ L R + E A A+ + + + R G AK +++SN +LV+++
Sbjct: 92 LEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGRIAKRKMIRSNLRLVVSI 151
Query: 203 CKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAV 382
K ++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +
Sbjct: 152 AKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTI 211
Query: 383 RLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP+H++E+L +LK L+ +L R
Sbjct: 212 RLPIHVVEKLNKLKKAQRVLKQKLQR 237
[199][TOP]
>UniRef100_B7CAE6 RNA polymerase sigma factor n=1 Tax=Eubacterium biforme DSM 3989
RepID=B7CAE6_9FIRM
Length = 409
Score = 113 bits (283), Expect = 6e-24
Identities = 54/137 (39%), Positives = 86/137 (62%)
Frame = +2
Query: 50 QCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGP 229
Q ++ + P SEE +A + G +AK+ L+ SN +LV+++ K +VG+G
Sbjct: 143 QAKEDIKNPDLSEEEKKKLAKIIAD-------GEEAKQTLISSNLRLVVSIAKKYVGRGM 195
Query: 230 HIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQ 409
DL+ EG GL+K VEK+D TKGF+F TYA WWIRQ+++R++A+ R +R+P+HM+E
Sbjct: 196 LFLDLIQEGNCGLIKAVEKFDYTKGFKFSTYATWWIRQSITRAIADQARTIRIPVHMVET 255
Query: 410 LTRLKNLSAKLQTQLAR 460
+ +L + +L L R
Sbjct: 256 INKLTRIQRQLVQDLGR 272
[200][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 113 bits (283), Expect = 6e-24
Identities = 49/135 (36%), Positives = 86/135 (63%)
Frame = +2
Query: 56 EKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHI 235
EK P +SE AA DV+ + +AKE ++ +N +LV+++ K +V +G +
Sbjct: 172 EKLQREPTSSEWTAACKVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSL 231
Query: 236 QDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLT 415
QDL+ EG GL++ EK+D+ KGF+F TYA WW++QAV+R++A+ R +RLP+H+ + ++
Sbjct: 232 QDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTIS 291
Query: 416 RLKNLSAKLQTQLAR 460
++ + L ++ R
Sbjct: 292 AIRKTTRTLNIEIGR 306
[201][TOP]
>UniRef100_Q2JT33 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JT33_SYNJA
Length = 364
Score = 113 bits (282), Expect = 7e-24
Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVA-------MDVESLKLRYDAGLKAKELLLK 175
+D++ L V+ + +K L R T E AA + E L+ G +AKE ++K
Sbjct: 72 QDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQIQRIGKRAKEHMIK 131
Query: 176 SNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSR 355
+N +LV++V K + +G + DL+ EG GL + VEK+D KG+RF TYA+WWIRQ ++R
Sbjct: 132 ANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWWIRQGITR 191
Query: 356 SLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++A R +RLP+H+ E+L ++K KL + R
Sbjct: 192 AIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGR 226
[202][TOP]
>UniRef100_B7K407 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7K407_CYAP8
Length = 328
Score = 113 bits (282), Expect = 7e-24
Identities = 53/143 (37%), Positives = 89/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L ++K Q + + +E A AV + LK + G +AK ++++N +LV+ + K
Sbjct: 51 LFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ R +RLP
Sbjct: 111 YQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L +L R
Sbjct: 171 IHITEKLNKIKKTQRELSQKLGR 193
[203][TOP]
>UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ73_CYAA5
Length = 328
Score = 113 bits (282), Expect = 7e-24
Identities = 51/143 (35%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L + K + ++L + + +E A V ++ ++L + G +AK ++++N +LV+ + K
Sbjct: 51 LLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKK 110
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D TKG++F TYA+WWIRQA++R++A+ R +RLP
Sbjct: 111 YQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLP 170
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L L R
Sbjct: 171 IHITEKLNKIKKTQRELSQTLGR 193
[204][TOP]
>UniRef100_B0C599 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C599_ACAM1
Length = 318
Score = 113 bits (282), Expect = 7e-24
Identities = 55/145 (37%), Positives = 89/145 (61%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
+ L+++K+Q + L R E A + V L+ G A +++SN +LV+++
Sbjct: 40 IMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQTANRKMVESNLRLVVSIA 99
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K + DL+ EG GL +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +R
Sbjct: 100 KKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYAYWWIRQAMTRAIAEQERTIR 159
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
LP+H+ E+L +L+ + +L +L R
Sbjct: 160 LPIHINEKLNKLRKVKRQLSLKLHR 184
[205][TOP]
>UniRef100_B0C249 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0C249_ACAM1
Length = 327
Score = 113 bits (282), Expect = 7e-24
Identities = 51/132 (38%), Positives = 86/132 (65%)
Frame = +2
Query: 65 LHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDL 244
L R + EE A + L+L G +AK+ ++++N +LV++V K + + + DL
Sbjct: 62 LGREPSLEEWAEKANLSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDL 121
Query: 245 VSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLK 424
+ EG GL +GVEK+D T+G++F TYA+WWIRQA++R++A+ R +RLP+H+ E+L ++K
Sbjct: 122 IQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIK 181
Query: 425 NLSAKLQTQLAR 460
+L +L R
Sbjct: 182 KAQRELSQKLGR 193
[206][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 113 bits (282), Expect = 7e-24
Identities = 52/118 (44%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Frame = +2
Query: 113 DVESLKLR--YDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEK 286
DVE L LR D G +A+E L +N +LV++V K ++G+G + DL+ EG GL++ VEK
Sbjct: 147 DVERLALRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEK 206
Query: 287 YDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++ TKGF+F TYA WWIRQA++R++A+ R +R+P+HM+E + R+ + +L + R
Sbjct: 207 FNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGR 264
[207][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 113 bits (282), Expect = 7e-24
Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Frame = +2
Query: 80 TSEEIAAAVAMDVESL----KLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
T E++ A A + L L D G A+E L ++N +LV++V K ++G+G + DL+
Sbjct: 275 TVEDVQQACAAARDQLWRDWNLAIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLI 334
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL++ VEK+D KGF+F TYA WWIRQA++R++A+ R +R+P+HM+E + RL
Sbjct: 335 QEGNVGLIRAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMR 394
Query: 428 LSAKLQTQLAR 460
S ++ +L R
Sbjct: 395 ESRRMLQELGR 405
[208][TOP]
>UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
RepID=A4X4X9_SALTO
Length = 332
Score = 113 bits (282), Expect = 7e-24
Identities = 52/128 (40%), Positives = 84/128 (65%)
Frame = +2
Query: 77 ATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEG 256
AT ++ A+ D+E + G AK+ LL++N +LV+++ K + G+G DL+ EG
Sbjct: 71 ATCTPVSVALRADLELVAAE---GRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEG 127
Query: 257 VKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSA 436
GL++ VEK+D TKG++F TYA WWIRQA++R++A+ R +R+P+HM+EQ+ R+
Sbjct: 128 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRTRR 187
Query: 437 KLQTQLAR 460
+L L R
Sbjct: 188 ELSVSLGR 195
[209][TOP]
>UniRef100_C7N4Z8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4Z8_SLAHD
Length = 394
Score = 113 bits (282), Expect = 7e-24
Identities = 48/105 (45%), Positives = 77/105 (73%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
GL AK+ L+++N +LV+++ K +VG+G DL+ EG GL++ VEK+D TKGF+F TYA
Sbjct: 153 GLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 212
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQA++R++A+ R +R+P+HM+E + +L + +L +L R
Sbjct: 213 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGR 257
[210][TOP]
>UniRef100_C7MZ75 RNA polymerase sigma factor, sigma-70 family n=1
Tax=Saccharomonospora viridis DSM 43017
RepID=C7MZ75_SACVD
Length = 342
Score = 113 bits (282), Expect = 7e-24
Identities = 49/105 (46%), Positives = 76/105 (72%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G +AK LL++N +LV+++ K + G+G + DL+ EG GL++ VEK+D TKGF+F TYA
Sbjct: 102 GEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 161
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQA++R +A+ GR +RLP+H++EQ+ +L + L +L R
Sbjct: 162 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGR 206
[211][TOP]
>UniRef100_C4DDY0 RNA polymerase sigma factor n=1 Tax=Stackebrandtia nassauensis DSM
44728 RepID=C4DDY0_9ACTO
Length = 323
Score = 113 bits (282), Expect = 7e-24
Identities = 52/124 (41%), Positives = 82/124 (66%), Gaps = 6/124 (4%)
Frame = +2
Query: 107 AMDVESLKLRYDA------GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGL 268
A ++ L+L D G +AK +LLK+N +LV+++ K +VG+G + DL+ EG GL
Sbjct: 64 ARPIDDLQLERDLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQEGNLGL 123
Query: 269 LKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQT 448
++ VEK+D TKGF+F TYA WWIRQA++R++A+ R +R+P H EQ+ R+ + +L
Sbjct: 124 IRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRVPAHTAEQINRIAKIRRELTA 183
Query: 449 QLAR 460
+ R
Sbjct: 184 EQGR 187
[212][TOP]
>UniRef100_B9YR21 RNA polymerase, sigma 32 subunit, RpoH n=1 Tax='Nostoc azollae'
0708 RepID=B9YR21_ANAAZ
Length = 274
Score = 113 bits (282), Expect = 7e-24
Identities = 52/127 (40%), Positives = 84/127 (66%)
Frame = +2
Query: 80 TSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGV 259
T EE AA+ ++ L G AK ++++N +LV++V K ++ + + DL+ EG
Sbjct: 14 TLEEWAASAQVEPVELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGS 73
Query: 260 KGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAK 439
G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP+H+ E+L ++K +
Sbjct: 74 IGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQ 133
Query: 440 LQTQLAR 460
L +L R
Sbjct: 134 LSQKLGR 140
[213][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 113 bits (282), Expect = 7e-24
Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPA--TSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKL 190
+D + LE ++ + A T + A+A ++V++L R G AK ++++N +L
Sbjct: 43 QDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDGKSAKNEMIQANLRL 102
Query: 191 VMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAET 370
V+++ K + QDL+ EG GL++G EK+D +G++F TYAHWWIRQAV+RS+++
Sbjct: 103 VVSIAKKYANSNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQ 162
Query: 371 GRAVRLPMHMIEQLTRLKNLSAK 439
R +RLP+H+ E ++R+ + K
Sbjct: 163 SRTIRLPVHLFEIISRISKMEQK 185
[214][TOP]
>UniRef100_Q0I680 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I680_SYNS3
Length = 376
Score = 112 bits (281), Expect = 1e-23
Identities = 50/125 (40%), Positives = 83/125 (66%)
Frame = +2
Query: 86 EEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKG 265
E A ++ D L+LR G KA++ ++++N +LV+ V K + +G + DLV EG G
Sbjct: 113 ETWANLISTDSRELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLG 172
Query: 266 LLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQ 445
L + VEK+D+T+GFRF TY++WWIRQ ++R++A R +RLP+H+ E+L R+K + ++
Sbjct: 173 LERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIA 232
Query: 446 TQLAR 460
+ R
Sbjct: 233 SNEGR 237
[215][TOP]
>UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J7M4_NOSP7
Length = 327
Score = 112 bits (281), Expect = 1e-23
Identities = 52/148 (35%), Positives = 87/148 (58%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+ + L K K LHR E A V ++ G +AK+ ++++N +LV+
Sbjct: 46 QQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETEVQQTVAQGKRAKQKMIEANLRLVV 105
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
+ K + + DL+ EG GL +GVEK+D +G++F TYA+WWIRQA++R++A+ GR
Sbjct: 106 AIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGR 165
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+RLP+H+ E+L ++K + +L L R
Sbjct: 166 TIRLPIHITEKLNKIKKVQRELAQTLGR 193
[216][TOP]
>UniRef100_A5GWT3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GWT3_SYNR3
Length = 370
Score = 112 bits (281), Expect = 1e-23
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 22/175 (12%)
Frame = +2
Query: 2 HQAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKA-------- 157
H V R E+ R+ K H+P+ S+ A A + L+ + AG KA
Sbjct: 59 HPDVARLEALEEQRLRETSKLGHQPSQSQW-AQACGLSAGELRAQVQAGNKAWAELLDMS 117
Query: 158 --------------KELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDA 295
KE ++++N +LV+ V K + +G + DLV EG GL +GVEKYD
Sbjct: 118 PGDLQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYDP 177
Query: 296 TKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
T+GFRF TYA+WWIRQ ++R++A R +RLP+H+ E+L R+K + ++L R
Sbjct: 178 TRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQRDIASRLGR 232
[217][TOP]
>UniRef100_B1XNJ6 RNA polymerase sigma factor n=2 Tax=Synechococcus
RepID=B1XNJ6_SYNP2
Length = 365
Score = 112 bits (281), Expect = 1e-23
Identities = 53/143 (37%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMD-VESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ + + ++ L R T+EE A+ + ++ V+ L G AK +++SN +LV+++ K
Sbjct: 86 EERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGRVAKRKMIRSNLRLVVSIAKR 145
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 146 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 205
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ L R
Sbjct: 206 IHIVEKLNKLKKAQRTLKQTLQR 228
[218][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 112 bits (281), Expect = 1e-23
Identities = 55/131 (41%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Frame = +2
Query: 80 TSEEIAAAVAMDVESLKLRYDA----GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
T EE+ + D +L+ R++ G A++ L ++N +LV++V K + G+G + DLV
Sbjct: 272 TDEEVWELLRRDEAALQARWEEFVVRGDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLV 331
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL++ VEK+ KGF+F TYA WWIRQA++R++A+ R +R+P+HM+EQ+ RL
Sbjct: 332 QEGNLGLIRAVEKFQHHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIR 391
Query: 428 LSAKLQTQLAR 460
S +LQ +L R
Sbjct: 392 TSRRLQQELGR 402
[219][TOP]
>UniRef100_C2CP37 RNA polymerase sigma factor n=1 Tax=Corynebacterium striatum ATCC
6940 RepID=C2CP37_CORST
Length = 337
Score = 112 bits (281), Expect = 1e-23
Identities = 52/131 (39%), Positives = 86/131 (65%)
Frame = +2
Query: 68 HRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 247
++ A +E+I A D LK+ G KA+ LL++N +LV+++ K + G+G + DL+
Sbjct: 74 YKLANAEKITRAEKRD---LKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLI 130
Query: 248 SEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKN 427
EG GL++ +EK+D KGF+F TYA WWIRQA++R +A+ R +RLP+H++EQ+ +L
Sbjct: 131 QEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSR 190
Query: 428 LSAKLQTQLAR 460
+ ++ L R
Sbjct: 191 IKREMYQSLGR 201
[220][TOP]
>UniRef100_C2AAT6 RNA polymerase sigma factor n=1 Tax=Thermomonospora curvata DSM
43183 RepID=C2AAT6_THECU
Length = 357
Score = 112 bits (281), Expect = 1e-23
Identities = 55/138 (39%), Positives = 88/138 (63%), Gaps = 4/138 (2%)
Frame = +2
Query: 59 KTLHRPATSEEIAAAVAM----DVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKG 226
KT+ +EE A A + L+L G +AK+ L+++N +LV+++ K +VG+G
Sbjct: 85 KTIEAGLFAEEKLARAAFISPRERLDLELIAREGARAKQRLIEANLRLVVSIAKRYVGRG 144
Query: 227 PHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIE 406
DL+ EG GL++ VEK+D TKGF+F TYA WWIRQA++R++A+ R +R+P+HM+E
Sbjct: 145 MLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 204
Query: 407 QLTRLKNLSAKLQTQLAR 460
+ +L + +L L R
Sbjct: 205 TINKLVRVQRQLHQDLGR 222
[221][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FBN4_9CLOT
Length = 372
Score = 112 bits (281), Expect = 1e-23
Identities = 50/102 (49%), Positives = 74/102 (72%)
Frame = +2
Query: 155 AKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWW 334
AK+ L ++N +LV+++ K +VG+G DL+ EG GL+K VEKYD +KGF+F TYA WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 335 IRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
IRQA++RS+A+ R +R+P+HM+E + RL S +L +L R
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGR 236
[222][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 112 bits (281), Expect = 1e-23
Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Frame = +2
Query: 113 DVESLKLRYDAG-LKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKY 289
D + R AG +AK +L+ SN +LV+++ K +VG+G DL+ EG GL+K VEK+
Sbjct: 153 DEPEIARRIQAGDEEAKRILISSNLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKF 212
Query: 290 DATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
D TKGF+F TYA WWIRQA++R++A+ R +R+P+HM+E + +L + +L L R
Sbjct: 213 DYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRVQRQLVQDLGR 269
[223][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
RepID=B6FWI1_9CLOT
Length = 388
Score = 112 bits (281), Expect = 1e-23
Identities = 50/116 (43%), Positives = 81/116 (69%)
Frame = +2
Query: 113 DVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYD 292
+VE K ++ AK+ L+++N +LV+++ K +VG+G DL+ EG GL+K VEK+D
Sbjct: 137 EVEYAKRMHEGDELAKQRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFD 196
Query: 293 ATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
KGF+F TYA WWIRQA++R++A+ R +R+P+HM+E + +L +S +L +L R
Sbjct: 197 YEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLMRVSRQLLQELGR 252
[224][TOP]
>UniRef100_P33118 RNA polymerase sigma factor sigB n=1 Tax=Corynebacterium
diphtheriae RepID=RPSB_CORDI
Length = 329
Score = 112 bits (281), Expect = 1e-23
Identities = 51/127 (40%), Positives = 85/127 (66%)
Frame = +2
Query: 80 TSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGV 259
+ E + A+ D LK+ G KA+ LL++N +LV+++ K + G+G + DL+ EG
Sbjct: 70 SQEPLTRAMKRD---LKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 126
Query: 260 KGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAK 439
GL++ +EK+D +KGF+F TYA WWIRQA++R +A+ R +RLP+H++EQ+ +L + +
Sbjct: 127 LGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRE 186
Query: 440 LQTQLAR 460
+ QL R
Sbjct: 187 MYQQLGR 193
[225][TOP]
>UniRef100_Q7V3X0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V3X0_PROMM
Length = 376
Score = 112 bits (280), Expect = 1e-23
Identities = 51/121 (42%), Positives = 79/121 (65%)
Frame = +2
Query: 98 AAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKG 277
A +D LK AG +AK+ ++++N +LV+ V K + +G + DLV EG GL +
Sbjct: 117 ALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTLGLERA 176
Query: 278 VEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLA 457
VEK+D T+GFRF TYA+WWIRQ ++R++A R +RLPMH+ E+L R+K + ++ +
Sbjct: 177 VEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPMHITEKLNRIKRVQQEIASSQG 236
Query: 458 R 460
R
Sbjct: 237 R 237
[226][TOP]
>UniRef100_B7K1W1 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7K1W1_CYAP8
Length = 375
Score = 112 bits (280), Expect = 1e-23
Identities = 53/143 (37%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ ++Q + L P T + A A+ D + + R G AK +++SN +LV+++ K
Sbjct: 96 EQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAKRKMIRSNLRLVVSIAKR 155
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 156 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 215
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ +L R
Sbjct: 216 IHIVEKLNKLKKAQRILKQKLQR 238
[227][TOP]
>UniRef100_B1WQ30 RNA polymerase sigma factor n=2 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ30_CYAA5
Length = 374
Score = 112 bits (280), Expect = 1e-23
Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVES-LKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ ++Q ++ L + E A A+ + + + R G AK +++SN +LV+++ K
Sbjct: 95 EETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAKRKMIRSNLRLVVSIAKR 154
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 155 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 214
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ +L R
Sbjct: 215 IHVVEKLNKLKKAQRVLKQKLQR 237
[228][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 112 bits (280), Expect = 1e-23
Identities = 48/105 (45%), Positives = 75/105 (71%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G +A++ L ++N +LV+++ K +VG+G H DL+ EG GL+K VEK+D TKGF+F TYA
Sbjct: 224 GERARQELAEANLRLVVSIAKRYVGRGMHFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYA 283
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQA++R++A+ R +R+P+HM+E + +L + L L R
Sbjct: 284 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRTLIQDLGR 328
[229][TOP]
>UniRef100_C8WGN9 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Eggerthella lenta DSM 2243 RepID=C8WGN9_9ACTN
Length = 409
Score = 112 bits (280), Expect = 1e-23
Identities = 47/105 (44%), Positives = 77/105 (73%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G+ AK+ L+++N +LV+++ K +VG+G DL+ EG GL++ VEK+D TKGF+F TYA
Sbjct: 168 GIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 227
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQA++R++A+ R +R+P+HM+E + +L + +L +L R
Sbjct: 228 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGR 272
[230][TOP]
>UniRef100_C7QR32 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 8802 RepID=C7QR32_CYAP0
Length = 375
Score = 112 bits (280), Expect = 1e-23
Identities = 53/143 (37%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 35 EKVKRQCEKTLHRPATSEEIAAAVAMDVE-SLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
E+ ++Q + L P T + A A+ D + + R G AK +++SN +LV+++ K
Sbjct: 96 EQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAKRKMIRSNLRLVVSIAKR 155
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ +G DL+ EG GL + EK+D KG++F TYA+WWIRQA++R++A R +RLP
Sbjct: 156 YLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLP 215
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H++E+L +LK L+ +L R
Sbjct: 216 IHIVEKLNKLKKAQRILKQKLQR 238
[231][TOP]
>UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM
7454 RepID=B6WAP8_9FIRM
Length = 617
Score = 112 bits (280), Expect = 1e-23
Identities = 56/148 (37%), Positives = 87/148 (58%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 196
+D EK K C+K E A DV+ L +AK+ L ++N +LV+
Sbjct: 342 KDLERFEKTKELCKKIF-------EDQGFDADDVKRLNRAIFDANRAKQKLAETNLRLVV 394
Query: 197 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 376
++ K +VG+G DL+ EG GL+K V+KYD +GF+F TYA WWIRQA++R++A+ R
Sbjct: 395 SIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRGFKFSTYATWWIRQAITRAIADQAR 454
Query: 377 AVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+R+P+HM+E + +L + +L L R
Sbjct: 455 TIRIPVHMVETINKLVRIQRQLVQDLGR 482
[232][TOP]
>UniRef100_B4WFP5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WFP5_9SYNE
Length = 431
Score = 112 bits (280), Expect = 1e-23
Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A M VE + + G +AKE ++K+N +LV++V K + +G + DL+ EG GL +
Sbjct: 172 AEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 231
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKL-QTQ 451
VEK+D TKG+RF TYA+WWIRQ ++R++A R +RLP+H+ E+L ++K K+ QTQ
Sbjct: 232 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTQ 291
[233][TOP]
>UniRef100_A0YXP5 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YXP5_9CYAN
Length = 333
Score = 112 bits (280), Expect = 1e-23
Identities = 51/143 (35%), Positives = 91/143 (63%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
LE+ + +K H P+ +E A V + + L D G +AK+ ++++N +LV+++ K
Sbjct: 58 LEEKDKLTKKLEHEPSKTEW-ANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKK 116
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
+ + DL+ EG GL +GVEK+D +G++F TYA+WW+RQA++R++A+ GR +RLP
Sbjct: 117 YQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLP 176
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K + L + R
Sbjct: 177 IHITEKLNKIKRVQRDLVQKYGR 199
[234][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 112 bits (280), Expect = 1e-23
Identities = 48/105 (45%), Positives = 75/105 (71%)
Frame = +2
Query: 146 GLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYA 325
G +A++ L ++N +LV+++ K +VG+G H DL+ EG GL+K VEK+D TKGF+F TYA
Sbjct: 217 GERARQELAEANLRLVVSIAKRYVGRGMHFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYA 276
Query: 326 HWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
WWIRQA++R++A+ R +R+P+HM+E + +L + L L R
Sbjct: 277 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRTLIQDLGR 321
[235][TOP]
>UniRef100_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium
RepID=Q9ZTL1_CYACA
Length = 589
Score = 112 bits (280), Expect = 1e-23
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Frame = +2
Query: 11 VCRDFLF---LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSN 181
+C++ F LE V+ + + R E A M V L+ + G +AK ++ +N
Sbjct: 280 ICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRAKNRMVAAN 339
Query: 182 YKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSL 361
+LV+ K F +G QDLV EG GL++GVEKYDA +GFRF TYA WWIRQ + ++L
Sbjct: 340 LRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIRQGIHKAL 399
Query: 362 AETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
E + RLP+H+ E + ++ S +L L R
Sbjct: 400 LECSKMFRLPVHVNEMIKEIRRCSYELMNILGR 432
[236][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 112 bits (280), Expect = 1e-23
Identities = 53/146 (36%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHR-PATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTV 202
L E VK L R P SE AA DV + +AKE ++ +N +LV+++
Sbjct: 144 LHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSI 203
Query: 203 CKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAV 382
K +V +G +QDL+ EG GL++ EK+D+ KGF+F TYA WW++QAV+R++A+ R +
Sbjct: 204 AKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTI 263
Query: 383 RLPMHMIEQLTRLKNLSAKLQTQLAR 460
RLP+H+ + ++ ++ + L ++ R
Sbjct: 264 RLPVHLYDTISAIRKTTRNLNIEIGR 289
[237][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 112 bits (280), Expect = 1e-23
Identities = 52/152 (34%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDV----ESLKLRYDAGLKAKELLLKSNY 184
+D ++L V CE+ E A++ + L+ R + G +AK ++++N
Sbjct: 298 QDLMYLNSV---CERLEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANL 354
Query: 185 KLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLA 364
+LV+++ K + K QDL+ EG GL++G EK+D +G++F TYAHWWIRQAV+RS++
Sbjct: 355 RLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSIS 414
Query: 365 ETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+ R +RLP+H+ E ++R+ + ++ +L R
Sbjct: 415 DQSRTIRLPVHLFEIISRMSKVERQMVLKLGR 446
[238][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 112 bits (279), Expect = 2e-23
Identities = 54/140 (38%), Positives = 88/140 (62%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L LE K + ++ + T E++AA++ M L+ + A+E L SN +LVM++
Sbjct: 210 LLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIA 269
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
+ + G + DLV G+ GLL+G+EK+D++KGF+ TY +WWIRQ VSR+L E R +R
Sbjct: 270 QRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 329
Query: 386 LPMHMIEQLTRLKNLSAKLQ 445
LP H+ E+L+ ++N +L+
Sbjct: 330 LPSHLHERLSLIRNAKIRLE 349
[239][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 112 bits (279), Expect = 2e-23
Identities = 54/140 (38%), Positives = 88/140 (62%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L LE K + ++ + T E++AA++ M L+ + A+E L SN +LVM++
Sbjct: 221 LLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIA 280
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
+ + G + DLV G+ GLL+G+EK+D++KGF+ TY +WWIRQ VSR+L E R +R
Sbjct: 281 QRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 340
Query: 386 LPMHMIEQLTRLKNLSAKLQ 445
LP H+ E+L+ ++N +L+
Sbjct: 341 LPSHLHERLSLIRNAKIRLE 360
[240][TOP]
>UniRef100_Q9KHE8 Group 2 sigma 70-type sigma factor D n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE8_ANASP
Length = 332
Score = 112 bits (279), Expect = 2e-23
Identities = 53/143 (37%), Positives = 90/143 (62%)
Frame = +2
Query: 32 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKS 211
L++++ + R + EE A A ++ L G AK ++++N +LV++V K
Sbjct: 56 LQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEIAKRKMVEANLRLVVSVAKK 115
Query: 212 FVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLP 391
++ + + DL+ EG G+ +GVEK+D TKG+RF TYA+WWIRQA++R++AE R +RLP
Sbjct: 116 YIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLP 175
Query: 392 MHMIEQLTRLKNLSAKLQTQLAR 460
+H+ E+L ++K +L +L R
Sbjct: 176 IHITEKLNKIKKAQRQLSQRLGR 198
[241][TOP]
>UniRef100_Q2JNL1 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JNL1_SYNJB
Length = 361
Score = 112 bits (279), Expect = 2e-23
Identities = 49/139 (35%), Positives = 89/139 (64%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L +++ +++ + + E +A A+ + V +L+ R G +A+ L+ +N +LV++V
Sbjct: 81 LLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQAQRKLINANLRLVVSVA 140
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K ++ +G DL+ EG GL++ EK++A +GFRF TYAHWWIRQ ++R +A R +R
Sbjct: 141 KKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQARTIR 200
Query: 386 LPMHMIEQLTRLKNLSAKL 442
LP+HM++++ LK + +L
Sbjct: 201 LPVHMVDKVRLLKRTNREL 219
[242][TOP]
>UniRef100_Q2JIA4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIA4_SYNJB
Length = 366
Score = 112 bits (279), Expect = 2e-23
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Frame = +2
Query: 17 RDFLFLEKVKRQCEKTLHR-PATSEEIAAA------VAMDVESLKLRYDAGLKAKELLLK 175
+D++ L ++ + +K L R P +E +A A + E L+ G +AKE ++K
Sbjct: 74 QDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQIQRIGKRAKEHMIK 133
Query: 176 SNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSR 355
+N +LV++V K + +G + DL+ EG GL + VEK+D KG+RF TYA+WWIRQ ++R
Sbjct: 134 ANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWWIRQGITR 193
Query: 356 SLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
++A R +RLP+H+ E+L ++K KL + R
Sbjct: 194 AIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGR 228
[243][TOP]
>UniRef100_C4LJ07 RNA polymerase sigma factor n=1 Tax=Corynebacterium kroppenstedtii
DSM 44385 RepID=C4LJ07_CORK4
Length = 621
Score = 112 bits (279), Expect = 2e-23
Identities = 52/128 (40%), Positives = 87/128 (67%)
Frame = +2
Query: 77 ATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEG 256
A++ +++ A + D+ S+ G KAK LL++N +LV+++ K + G+G DL+ EG
Sbjct: 361 ASNTKLSPAQSRDLRSIA---HDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEG 417
Query: 257 VKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSA 436
GL++ VEK+D TKG++F TYA WWIRQA++RS+A+ R +R+P+HM+E + +L +
Sbjct: 418 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQR 477
Query: 437 KLQTQLAR 460
+L L+R
Sbjct: 478 ELLQDLSR 485
[244][TOP]
>UniRef100_A0LVM5 RNA polymerase sigma factor n=1 Tax=Acidothermus cellulolyticus 11B
RepID=A0LVM5_ACIC1
Length = 413
Score = 112 bits (279), Expect = 2e-23
Identities = 51/116 (43%), Positives = 81/116 (69%)
Frame = +2
Query: 113 DVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYD 292
D+E+++ D G +AK +L++N +LV++V K + +G D++ EG GL++ VEK+D
Sbjct: 165 DLEAIR---DDGARAKAHMLEANLRLVVSVAKRYSNRGMAFLDVIQEGNLGLIRAVEKFD 221
Query: 293 ATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
TKG++F TYA WWIRQA++R+LA+ R +RLP+H++EQL +L L +L Q R
Sbjct: 222 YTKGYKFSTYAMWWIRQAITRALADQARTIRLPVHVVEQLNKLTRLQRELHQQFGR 277
[245][TOP]
>UniRef100_Q061Y0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q061Y0_9SYNE
Length = 355
Score = 112 bits (279), Expect = 2e-23
Identities = 51/122 (41%), Positives = 81/122 (66%)
Frame = +2
Query: 95 AAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLK 274
A A++ + LKL G +AK+ ++++N +LV+ V K + +G I DLV EG GL +
Sbjct: 95 AEQAAIEAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLER 154
Query: 275 GVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
VEK+D T+GFRF TYA+WWIRQ ++R++A R +RLP+H+ E+L R+K + ++ +
Sbjct: 155 AVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRVQQEIASNE 214
Query: 455 AR 460
R
Sbjct: 215 GR 216
[246][TOP]
>UniRef100_Q05V50 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05V50_9SYNE
Length = 364
Score = 112 bits (279), Expect = 2e-23
Identities = 49/118 (41%), Positives = 81/118 (68%)
Frame = +2
Query: 107 AMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEK 286
A++ + L+ R G +A++ ++++N +LV+TV K + +G + DLV EG GL + VEK
Sbjct: 108 ALESKELQKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEK 167
Query: 287 YDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
+D T+GFRF TYA+WWIRQ ++R++A R +RLP+H+ E+L R+K + ++ T R
Sbjct: 168 FDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGR 225
[247][TOP]
>UniRef100_C5VCH9 RNA polymerase sigma factor n=1 Tax=Corynebacterium matruchotii
ATCC 14266 RepID=C5VCH9_9CORY
Length = 365
Score = 112 bits (279), Expect = 2e-23
Identities = 48/112 (42%), Positives = 78/112 (69%)
Frame = +2
Query: 125 LKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKG 304
LK+ G KA+ LL++N +LV+++ K + G+G + DL+ EG GL++ +EK+D KG
Sbjct: 118 LKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKG 177
Query: 305 FRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAR 460
F+F TYA WWIRQA++R +A+ R +RLP+H++EQ+ +L + ++ QL R
Sbjct: 178 FKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGR 229
[248][TOP]
>UniRef100_C5VCG4 RNA polymerase sigma factor n=1 Tax=Corynebacterium matruchotii
ATCC 14266 RepID=C5VCG4_9CORY
Length = 608
Score = 112 bits (279), Expect = 2e-23
Identities = 54/145 (37%), Positives = 89/145 (61%)
Frame = +2
Query: 26 LFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVC 205
L+ + +Q EK ++ AV D+ ++ G KAK LL++N +LV+++
Sbjct: 331 LYADYRMKQMEKAYSNGDKEAKLTPAVKRDLRAIARD---GRKAKNHLLEANLRLVVSLA 387
Query: 206 KSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVR 385
K + G+G DL+ EG GL++ VEK+D TKG++F TYA WWIRQA++R++A+ R +R
Sbjct: 388 KRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIR 447
Query: 386 LPMHMIEQLTRLKNLSAKLQTQLAR 460
+P+HM+E + +L + +L L R
Sbjct: 448 IPVHMVEVINKLGRIQRELLQDLGR 472
[249][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDH0_9ACTO
Length = 334
Score = 112 bits (279), Expect = 2e-23
Identities = 52/128 (40%), Positives = 83/128 (64%)
Frame = +2
Query: 77 ATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEG 256
AT ++ + D+E + G AK+ LL++N +LV+++ K + G+G DL+ EG
Sbjct: 73 ATCTPVSTVLRADLEIIVAE---GRTAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEG 129
Query: 257 VKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSA 436
GL++ VEK+D TKGF+F TYA WWIRQA++R++A+ R +R+P+HM+EQ+ R+
Sbjct: 130 NLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARR 189
Query: 437 KLQTQLAR 460
+L L R
Sbjct: 190 ELAVTLGR 197
[250][TOP]
>UniRef100_C0FDC5 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FDC5_9CLOT
Length = 377
Score = 112 bits (279), Expect = 2e-23
Identities = 48/109 (44%), Positives = 77/109 (70%)
Frame = +2
Query: 128 KLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGF 307
K + + + AKE L+++N +LV+++ K + G+G DLV EG GL+KGVEK+D TKG+
Sbjct: 132 KRKAEGDVSAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGY 191
Query: 308 RFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQL 454
+ TYA WWIRQ+V+R+LA+ R +R+P+HM+E + ++ + KL +L
Sbjct: 192 KLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLEL 240