AV392905 ( CM098d09_r )

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[1][TOP]
>UniRef100_C1EFA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Micromonas sp. RCC299
            RepID=C1EFA8_9CHLO
          Length = 1616

 Score =  156 bits (394), Expect = 9e-37
 Identities = 75/111 (67%), Positives = 94/111 (84%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            TTNDV+AML TYGVEAAR T+++EV++VF  YGIGVD RHL+LIADFM  QG YR C+R 
Sbjct: 1502 TTNDVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVDARHLTLIADFMMQQGNYRPCSRA 1561

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
            GIE+S SPFLKMS+ETAA FL DAT++G+ D L+SP++R+ +GRV +LGTG
Sbjct: 1562 GIETSPSPFLKMSYETAAAFLVDATMKGAEDTLESPSSRIVMGRVPDLGTG 1612

[2][TOP]
>UniRef100_Q00WA2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q00WA2_OSTTA
          Length = 1789

 Score =  154 bits (390), Expect = 3e-36
 Identities = 75/118 (63%), Positives = 90/118 (76%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N V  ++ T+GVEA RAT++ EVQ+VFS YGIGVD RHLSLI DFMT QG YR CNR G
Sbjct: 1659 SNSVWDIMQTFGVEAGRATLVSEVQAVFSVYGIGVDARHLSLIGDFMTQQGEYRPCNRSG 1718

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IE S+SPFLKMS+ETA  FLT+AT+RG  DDL SP++R+ VGR V LGTG   L   +
Sbjct: 1719 IEKSISPFLKMSYETATAFLTEATIRGETDDLSSPSSRIVVGRTVNLGTGSFSLKHDV 1776

[3][TOP]
>UniRef100_A4SAV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4SAV6_OSTLU
          Length = 1663

 Score =  153 bits (387), Expect = 6e-36
 Identities = 75/118 (63%), Positives = 89/118 (75%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N V  ++ T+GVEA R+T++ EVQ+VF  YGIGVD RHLSLI DFMT QG YR CNR G
Sbjct: 1527 SNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIGVDTRHLSLIGDFMTQQGEYRPCNRSG 1586

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IE S SPFLKMS+ETA  FLTDAT+RG  DDL SP++R+ VGR V+LGTG   L   I
Sbjct: 1587 IEKSTSPFLKMSYETATAFLTDATIRGETDDLSSPSSRIVVGRTVDLGTGSFSLKHDI 1644

[4][TOP]
>UniRef100_P15398 DNA-directed RNA polymerase I subunit rpa1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPA1_SCHPO
          Length = 1689

 Score =  152 bits (383), Expect = 2e-35
 Identities = 74/114 (64%), Positives = 88/114 (77%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L  YGVEAAR  I+ EV SVF  YGI VDPRHLSLIAD+MT +GGY+A NR+G
Sbjct: 1566 TNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMG 1625

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            IE + SPF KMSFET  HFLT+A LRG VDDL +P++RL VGRV   GTG  ++
Sbjct: 1626 IEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679

[5][TOP]
>UniRef100_C1N756 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1N756_9CHLO
          Length = 1665

 Score =  149 bits (375), Expect = 1e-34
 Identities = 72/110 (65%), Positives = 87/110 (79%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV+AM+ TYGVEAAR T++ EV+ VF  YGI VD RHLSLI DFM  QG YR C+R G
Sbjct: 1531 TNDVYAMMQTYGVEAARETLVAEVRGVFGVYGIAVDARHLSLIGDFMMAQGDYRPCSRAG 1590

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
            +E+S SP LKMSFETAA FL DAT+RG  D L+SP+AR+ +GR V++GTG
Sbjct: 1591 METSTSPLLKMSFETAAAFLVDATMRGQEDTLESPSARIVLGRTVDMGTG 1640

[6][TOP]
>UniRef100_B6K3G0 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6K3G0_SCHJY
          Length = 1657

 Score =  149 bits (375), Expect = 1e-34
 Identities = 74/118 (62%), Positives = 89/118 (75%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L  YGVEAAR  I+RE+ SVF  YGI VD RHLSLIAD+MT +GGY+A NR+G
Sbjct: 1536 TNDIAAVLRIYGVEAARNAIVREISSVFGVYGIDVDHRHLSLIADYMTFEGGYKAFNRMG 1595

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IE S SPF KMSFET  HFLTDA L GS D++ +P+ARL VGRV   GTG  +L+  +
Sbjct: 1596 IEYSTSPFAKMSFETTCHFLTDAALSGSKDEVMNPSARLVVGRVGNFGTGSFDLLTPV 1653

[7][TOP]
>UniRef100_B9SL65 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SL65_RICCO
          Length = 1686

 Score =  148 bits (373), Expect = 2e-34
 Identities = 70/119 (58%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
            +N++HAML TYGVEAAR TI+RE+  VF +YGI V  RHLSLIADFMTH GGYR  +R+ 
Sbjct: 1566 SNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMG 1625

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI  S+SPF KMSFETA+ F+ +A L G +D+L++P+AR+C+G  V++GTG  +L+Q++
Sbjct: 1626 GIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKL 1684

[8][TOP]
>UniRef100_UPI0001983DA2 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
            RepID=UPI0001983DA2
          Length = 1740

 Score =  146 bits (369), Expect = 7e-34
 Identities = 73/119 (61%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
            +N+VHAML T+GVEAARATI++EV +VF+AYG+ V+ RHLSLIADFMTH GGYR  NR  
Sbjct: 1620 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1679

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI  SVSPF KM+FETA+ F+ +A   G  D+L+S +AR+C+G  V++GTGC +L+Q+I
Sbjct: 1680 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKI 1738

[9][TOP]
>UniRef100_A7PWB4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7PWB4_VITVI
          Length = 1518

 Score =  146 bits (369), Expect = 7e-34
 Identities = 73/119 (61%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
            +N+VHAML T+GVEAARATI++EV +VF+AYG+ V+ RHLSLIADFMTH GGYR  NR  
Sbjct: 1398 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1457

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI  SVSPF KM+FETA+ F+ +A   G  D+L+S +AR+C+G  V++GTGC +L+Q+I
Sbjct: 1458 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKI 1516

[10][TOP]
>UniRef100_B3S2I6 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3S2I6_TRIAD
          Length = 1724

 Score =  146 bits (368), Expect = 9e-34
 Identities = 69/118 (58%), Positives = 89/118 (75%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN++HAM  TYG+EAA   I++E+++VF  YGI V+ RHLSLIAD+MT++G YR  NR+G
Sbjct: 1604 TNEIHAMASTYGIEAAYRAIIKEIENVFRVYGIDVNYRHLSLIADYMTYEGSYRPLNRLG 1663

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            + S  SPF KMSFET  HFL +AT  G +D LKSP++RL  GRVV  GTGC +LVQ +
Sbjct: 1664 MASCSSPFQKMSFETTVHFLREATAHGEIDVLKSPSSRLVTGRVVNGGTGCFDLVQPL 1721

[11][TOP]
>UniRef100_A7S9W9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nematostella vectensis
            RepID=A7S9W9_NEMVE
          Length = 1242

 Score =  146 bits (368), Expect = 9e-34
 Identities = 71/118 (60%), Positives = 90/118 (76%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+HA+  TYG+EAA   I +EV++VF  YGI VDPRHL+L++D+MT++G  +A NRIG
Sbjct: 1124 TNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIG 1183

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IESS SPF KMSFET  HFL  A L G ++ LKSP++RL VGRVV  GTG  EL+Q +
Sbjct: 1184 IESSASPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGGGTGSFELLQPL 1241

[12][TOP]
>UniRef100_C3ZBW5 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZBW5_BRAFL
          Length = 1731

 Score =  143 bits (361), Expect = 6e-33
 Identities = 68/118 (57%), Positives = 91/118 (77%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N +HAM  TYG+EAA   I++E++ VF+ YGI VDPRHLSL+AD+MT++G Y+  NR G
Sbjct: 1613 SNHIHAMANTYGIEAACRIIVKEIKEVFAVYGIEVDPRHLSLVADYMTYEGVYKPFNRTG 1672

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+S+ SPF +MSFET+  FL +AT+ G+ DDLKSP+ARL  GR V  GTGC EL+Q +
Sbjct: 1673 IQSNASPFQQMSFETSMQFLKEATISGAKDDLKSPSARLVTGRPVMGGTGCFELLQPL 1730

[13][TOP]
>UniRef100_B9HA71 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HA71_POPTR
          Length = 464

 Score =  140 bits (354), Expect = 4e-32
 Identities = 67/119 (56%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
           +N +H ML  YGVEAAR TI+RE++ VF++YGI V+ RHLSLIAD+MTH G YR  +RI 
Sbjct: 344 SNSIHGMLKAYGVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIG 403

Query: 339 GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           GI  S+SP  KMSFETA+ F+ +A L G VD+L++P+AR+C+G  V++GTG  +L+Q++
Sbjct: 404 GISESISPLSKMSFETASKFIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKL 462

[14][TOP]
>UniRef100_UPI00006A0029 DNA-directed RNA polymerase I subunit RPA1 (EC 2.7.7.6) (DNA-directed
            RNA polymerase I largest subunit) (RNA polymerase I 194
            kDa subunit) (RPA194) (A190). n=1 Tax=Xenopus (Silurana)
            tropicalis RepID=UPI00006A0029
          Length = 1733

 Score =  134 bits (338), Expect = 3e-30
 Identities = 64/116 (55%), Positives = 88/116 (75%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+H M  T+G+EAA   + RE++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NRIG
Sbjct: 1615 SNDIHTMAKTFGIEAALRVVEREIKDVFAVYGIEVDPRHLSLVADYMCFEGTYKPLNRIG 1674

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
            ++SS SPF +M+FET+  FL DAT+ G+ DDL+SP+A L VG+VV+ GTG  +L Q
Sbjct: 1675 MQSSSSPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLKQ 1730

[15][TOP]
>UniRef100_Q3UZ02 Putative uncharacterized protein (Fragment) n=1 Tax=Mus musculus
           RepID=Q3UZ02_MOUSE
          Length = 742

 Score =  134 bits (338), Expect = 3e-30
 Identities = 66/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 624 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 683

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 684 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 741

[16][TOP]
>UniRef100_Q3UHI3 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=Q3UHI3_MOUSE
          Length = 1717

 Score =  134 bits (338), Expect = 3e-30
 Identities = 66/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1599 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1659 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1716

[17][TOP]
>UniRef100_O35134 DNA-directed RNA polymerase I subunit RPA1 n=2 Tax=Mus musculus
            RepID=RPA1_MOUSE
          Length = 1717

 Score =  134 bits (338), Expect = 3e-30
 Identities = 66/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1599 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1659 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1716

[18][TOP]
>UniRef100_Q0DAZ6 Os06g0612200 protein n=2 Tax=Oryza sativa Japonica Group
           RepID=Q0DAZ6_ORYSJ
          Length = 237

 Score =  134 bits (337), Expect = 4e-30
 Identities = 68/117 (58%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HAML TYGVEAARATI+ EV+ VF AYGI VD RHL+LIADFMT  GGYR  +R+G
Sbjct: 111 SNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLG 170

Query: 336 I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
           + + S SPF KM+FETA  F+ +A   G  D L  P+A +C+G+ V++GTG   L+Q
Sbjct: 171 MGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQ 227

[19][TOP]
>UniRef100_Q8UVY7 DNA-directed RNA polymerase n=1 Tax=Xenopus laevis RepID=Q8UVY7_XENLA
          Length = 1730

 Score =  134 bits (337), Expect = 4e-30
 Identities = 64/116 (55%), Positives = 89/116 (76%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  T+G+EAA   + +E++ VF+ YGI VDPRHLSL+AD+M  +G YR  NRIG
Sbjct: 1612 SNDIHAIANTFGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGTYRPLNRIG 1671

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
            ++SS SPF +M+FET+  FL DAT+ G+ DDL+SP+A L VG+VV+ GTG  +L Q
Sbjct: 1672 MQSSSSPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLKQ 1727

[20][TOP]
>UniRef100_Q69X40 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q69X40_ORYSJ
          Length = 1748

 Score =  134 bits (337), Expect = 4e-30
 Identities = 68/117 (58%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAML TYGVEAARATI+ EV+ VF AYGI VD RHL+LIADFMT  GGYR  +R+G
Sbjct: 1622 SNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLG 1681

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
            + + S SPF KM+FETA  F+ +A   G  D L  P+A +C+G+ V++GTG   L+Q
Sbjct: 1682 MGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQ 1738

[21][TOP]
>UniRef100_C5YUX4 Putative uncharacterized protein Sb09g027230 n=1 Tax=Sorghum
           bicolor RepID=C5YUX4_SORBI
          Length = 311

 Score =  134 bits (337), Expect = 4e-30
 Identities = 68/120 (56%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           T+ND+HA+L TYGVEAAR TI+ EV  VF  YGI VD RHLS+IADFMT  GGYR  NRI
Sbjct: 184 TSNDIHAILKTYGVEAARNTIINEVSGVFKPYGIDVDMRHLSMIADFMTLDGGYRPMNRI 243

Query: 339 GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           GI + S SPF KM+FETA  F+ +A   G  D L+ P+A +C+G+  ++GTG   L+Q +
Sbjct: 244 GIGQFSTSPFGKMTFETATKFIVEAATHGEADFLECPSASVCLGKPPKVGTGIFGLLQNL 303

[22][TOP]
>UniRef100_B9FU47 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9FU47_ORYSJ
          Length = 209

 Score =  134 bits (337), Expect = 4e-30
 Identities = 68/117 (58%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HAML TYGVEAARATI+ EV+ VF AYGI VD RHL+LIADFMT  GGYR  +R+G
Sbjct: 83  SNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLG 142

Query: 336 I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
           + + S SPF KM+FETA  F+ +A   G  D L  P+A +C+G+ V++GTG   L+Q
Sbjct: 143 MGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQ 199

[23][TOP]
>UniRef100_B8B4L0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8B4L0_ORYSI
          Length = 1350

 Score =  134 bits (337), Expect = 4e-30
 Identities = 68/117 (58%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAML TYGVEAARATI+ EV+ VF AYGI VD RHL+LIADFMT  GGYR  +R+G
Sbjct: 1224 SNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLG 1283

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
            + + S SPF KM+FETA  F+ +A   G  D L  P+A +C+G+ V++GTG   L+Q
Sbjct: 1284 MGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQ 1340

[24][TOP]
>UniRef100_C0JAC0 DNA-directed RNA polymerase n=1 Tax=Oryza coarctata
            RepID=C0JAC0_ORYCO
          Length = 1830

 Score =  133 bits (335), Expect = 6e-30
 Identities = 67/117 (57%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAML  YGVEAARATI++EV  VFSAYGI VD RHL++IADFMT  GGYR  +R G
Sbjct: 1704 SNDIHAMLKIYGVEAARATIIQEVSGVFSAYGINVDMRHLNMIADFMTFDGGYRPMSRQG 1763

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQ 169
            + + S SPF KM+FETA  F+ +A   G  D L  P+A +C+G+ V++GTG   L+Q
Sbjct: 1764 MGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASICLGKPVKMGTGSFGLLQ 1820

[25][TOP]
>UniRef100_UPI00002506FD DNA-directed RNA polymerase I subunit RPA1 (EC 2.7.7.6) (DNA-directed
            RNA polymerase I largest subunit) (RNA polymerase I 194
            kDa subunit) (RPA194) (A194). n=1 Tax=Rattus norvegicus
            RepID=UPI00002506FD
          Length = 1716

 Score =  133 bits (334), Expect = 8e-30
 Identities = 65/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1598 SNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1657

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1658 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1715

[26][TOP]
>UniRef100_Q0U0A2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0U0A2_PHANO
          Length = 1691

 Score =  133 bits (334), Expect = 8e-30
 Identities = 67/123 (54%), Positives = 88/123 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  ML  YGVEA RATI+RE+ +VFS +GI VD RHL+LIAD MT  GG+   NRIG
Sbjct: 1544 TNDIVGMLQLYGVEACRATIVREMHAVFSGHGISVDLRHLNLIADTMTKGGGFTPFNRIG 1603

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
            ++++VSPF KMSFET   FL DA L    DDL +P+AR+ VGR+ +LGTG  +++  +  
Sbjct: 1604 LKTNVSPFSKMSFETTVGFLKDAVLERDWDDLSNPSARIVVGRLGKLGTGAFDVLAPVNV 1663

Query: 156  LAP 148
            + P
Sbjct: 1664 IDP 1666

[27][TOP]
>UniRef100_O54889 DNA-directed RNA polymerase I subunit RPA1 n=1 Tax=Rattus norvegicus
            RepID=RPA1_RAT
          Length = 1716

 Score =  133 bits (334), Expect = 8e-30
 Identities = 65/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1598 SNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1657

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL  AT+ GS D+LKSP+A L VG+VV+ GTG  EL Q +
Sbjct: 1658 IQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPL 1715

[28][TOP]
>UniRef100_UPI0000EBD25A PREDICTED: similar to polymerase (RNA) I polypeptide A, 194kDa n=1
            Tax=Bos taurus RepID=UPI0000EBD25A
          Length = 1717

 Score =  132 bits (333), Expect = 1e-29
 Identities = 65/118 (55%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1599 SNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  ATL GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1659 IRSNSSPLQQMTFETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1716

[29][TOP]
>UniRef100_UPI000179E6F1 UPI000179E6F1 related cluster n=1 Tax=Bos taurus RepID=UPI000179E6F1
          Length = 1729

 Score =  132 bits (333), Expect = 1e-29
 Identities = 65/118 (55%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1611 SNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1670

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  ATL GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1671 IRSNSSPLQQMTFETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1728

[30][TOP]
>UniRef100_Q5KIF6 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KIF6_CRYNE
          Length = 1727

 Score =  132 bits (332), Expect = 1e-29
 Identities = 64/115 (55%), Positives = 84/115 (73%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            ++ND++A+L T+GVEAAR  I+ EV SVF AYGI VD RHL++IAD+MTH GG+R  NR 
Sbjct: 1607 SSNDIYAILQTFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTHAGGFRPFNRT 1666

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI +  SP LK SFET   FL++ATL G  DDL SPAA++ +G+    GTG  ++
Sbjct: 1667 GISAKSSPLLKASFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAFDI 1721

[31][TOP]
>UniRef100_Q86H36 DNA-directed RNA polymerase I subunit rpa1 n=1 Tax=Dictyostelium
            discoideum RepID=RPA1_DICDI
          Length = 1615

 Score =  132 bits (332), Expect = 1e-29
 Identities = 62/118 (52%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND++A+L  YGVEA R  +  E+ +VF+AYGI VD RHL L+ D+MT +GGYRA NRIG
Sbjct: 1497 TNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIG 1556

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IE++ SPF KMSFET   FL+ A+L G  D + SP++R+ +G++V+ GTG   +V  +
Sbjct: 1557 IENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTIVAPV 1614

[32][TOP]
>UniRef100_UPI00005A33A4 PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
            (RNA polymerase I 194 kDa subunit) (RPA194) n=1 Tax=Canis
            lupus familiaris RepID=UPI00005A33A4
          Length = 1699

 Score =  132 bits (331), Expect = 2e-29
 Identities = 64/118 (54%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1581 SNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1640

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1641 IRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1698

[33][TOP]
>UniRef100_UPI0000EB2786 DNA-directed RNA polymerase I subunit RPA1 (EC 2.7.7.6) (DNA-directed
            RNA polymerase I largest subunit) (RNA polymerase I 194
            kDa subunit) (RPA194) (A190). n=1 Tax=Canis lupus
            familiaris RepID=UPI0000EB2786
          Length = 1726

 Score =  132 bits (331), Expect = 2e-29
 Identities = 64/118 (54%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1608 SNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1667

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1668 IRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1725

[34][TOP]
>UniRef100_UPI0001797135 PREDICTED: polymerase (RNA) I polypeptide A, 194kDa n=1 Tax=Equus
            caballus RepID=UPI0001797135
          Length = 1719

 Score =  131 bits (330), Expect = 2e-29
 Identities = 64/118 (54%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1601 SNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1660

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 1661 IRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 1718

[35][TOP]
>UniRef100_UPI0000E1F513 PREDICTED: polymerase (RNA) I polypeptide A, 194kDa isoform 4 n=1
            Tax=Pan troglodytes RepID=UPI0000E1F513
          Length = 1515

 Score =  131 bits (329), Expect = 3e-29
 Identities = 64/118 (54%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1397 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1456

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1457 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1514

[36][TOP]
>UniRef100_UPI0000E1F511 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Pan troglodytes
            RepID=UPI0000E1F511
          Length = 1662

 Score =  131 bits (329), Expect = 3e-29
 Identities = 64/118 (54%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1544 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1603

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1604 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1661

[37][TOP]
>UniRef100_UPI0000E1F510 PREDICTED: polymerase (RNA) I polypeptide A, 194kDa isoform 3 n=2
            Tax=Pan troglodytes RepID=UPI0000E1F510
          Length = 1723

 Score =  131 bits (329), Expect = 3e-29
 Identities = 64/118 (54%), Positives = 86/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1605 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1664

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1665 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1722

[38][TOP]
>UniRef100_B2VT60 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2VT60_PYRTR
          Length = 1790

 Score =  131 bits (329), Expect = 3e-29
 Identities = 65/118 (55%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ AML  YGVEA RATI+RE+ +VFS +GI VD RHL+LIAD MT  GG+   +RIG
Sbjct: 1587 TNDIAAMLRIYGVEAGRATIVREMHNVFSGHGISVDHRHLNLIADTMTKGGGFTPFSRIG 1646

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ +VSPF+KMSFET   FL DA L    D+LK+P+AR+ VGR+  +GTG  +++  +
Sbjct: 1647 LKGNVSPFMKMSFETTVGFLKDAVLERDWDELKNPSARIVVGRLGGIGTGAFDVLAPV 1704

[39][TOP]
>UniRef100_C5LXY1 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LXY1_9ALVE
          Length = 1775

 Score =  130 bits (328), Expect = 4e-29
 Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAARA I++EV  VF  YGIGVDPRHL LI+D+MTH GG+R  +R G
Sbjct: 1632 TNDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVDPRHLMLISDYMTHHGGFRPFSRRG 1691

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGC----VELVQ 169
            +E+  SP+L+M+FET+ +FLT A      D LKSPA  + VG+   +GTGC    +E+ +
Sbjct: 1692 MEAHASPWLQMTFETSVNFLTKACNNAQYDTLKSPAGSIIVGKQASVGTGCFDLRMEMPK 1751

Query: 168  QIGGLA 151
             + GLA
Sbjct: 1752 SVRGLA 1757

[40][TOP]
>UniRef100_C5KZW7 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5KZW7_9ALVE
          Length = 1774

 Score =  130 bits (328), Expect = 4e-29
 Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAARA I++EV  VF  YGIGVDPRHL LI+D+MTH GG+R  +R G
Sbjct: 1631 TNDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVDPRHLMLISDYMTHHGGFRPFSRRG 1690

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGC----VELVQ 169
            +E+  SP+L+M+FET+ +FLT A      D LKSPA  + VG+   +GTGC    +E+ +
Sbjct: 1691 MEAHASPWLQMTFETSVNFLTKACNNAQYDTLKSPAGSIIVGKQASVGTGCFDLRMEMPK 1750

Query: 168  QIGGLA 151
             + GLA
Sbjct: 1751 SVRGLA 1756

[41][TOP]
>UniRef100_C5KJT1 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5KJT1_9ALVE
          Length = 1549

 Score =  130 bits (328), Expect = 4e-29
 Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAARA I++EV  VF  YGIGVDPRHL LI+D+MTH GG+R  +R G
Sbjct: 1406 TNDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVDPRHLMLISDYMTHHGGFRPFSRRG 1465

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGC----VELVQ 169
            +E+  SP+L+M+FET+ +FLT A      D LKSPA  + VG+   +GTGC    +E+ +
Sbjct: 1466 MEAHASPWLQMTFETSVNFLTKACNNAQYDTLKSPAGSIIVGKQASVGTGCFDLRMEMPK 1525

Query: 168  QIGGLA 151
             + GLA
Sbjct: 1526 SVRGLA 1531

[42][TOP]
>UniRef100_B2B231 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2B231_PODAN
          Length = 1706

 Score =  130 bits (326), Expect = 7e-29
 Identities = 64/118 (54%), Positives = 84/118 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAARA I+RE+  VF ++GI VD RHLSLIAD+MT  GG+   NRIG
Sbjct: 1580 TNDIAQVLEFYGVEAARANIVRELSGVFDSHGIAVDKRHLSLIADYMTRNGGFSPFNRIG 1639

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +  +VSPF KMS+ET   FL DA + G  D L +P++RL VG++  LGTG  +L+ Q+
Sbjct: 1640 LTGNVSPFTKMSYETTVGFLKDAVMDGEWDPLMTPSSRLVVGKLGGLGTGAFDLLTQV 1697

[43][TOP]
>UniRef100_A3LYS3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3LYS3_PICST
          Length = 1644

 Score =  130 bits (326), Expect = 7e-29
 Identities = 64/120 (53%), Positives = 85/120 (70%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+  VF  YGI V  RHL L+ D MT +G Y A NR 
Sbjct: 1523 TSNDVAAVLRTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLLGDMMTREGTYLAFNRQ 1582

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            GI+SS S F+KMS+ET   FLT A L G  +DL+SP+AR+ +G++  +GTG  +++ Q+G
Sbjct: 1583 GIDSSTSAFMKMSYETTCQFLTKAVLDGDREDLESPSARIVLGKLSNVGTGSFDVLAQLG 1642

[44][TOP]
>UniRef100_Q5RAX8 DNA-directed RNA polymerase n=1 Tax=Pongo abelii RepID=Q5RAX8_PONAB
          Length = 1659

 Score =  129 bits (325), Expect = 9e-29
 Identities = 64/118 (54%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M   G Y+  NR G
Sbjct: 1541 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFGGVYKPLNRFG 1600

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1601 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPL 1658

[45][TOP]
>UniRef100_C5KQT6 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5KQT6_9ALVE
          Length = 1662

 Score =  129 bits (324), Expect = 1e-28
 Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAARA I++EV  VF  YGIGVDPRHL LI+D+MTH GG+R  +R G
Sbjct: 1480 TNDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVDPRHLMLISDYMTHHGGFRPFSRRG 1539

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGC----VELVQ 169
            +E+  SP+L+M+FET+ +FLT A      D LKSPA  + VG+   +GTGC    +E+ +
Sbjct: 1540 MEAHASPWLQMTFETSVNFLTKACNNAQYDTLKSPAGSIIVGKQACVGTGCFDLRMEMPK 1599

Query: 168  QIGGLA 151
             + GLA
Sbjct: 1600 SVRGLA 1605

[46][TOP]
>UniRef100_Q9H6T2 cDNA: FLJ21915 fis, clone HEP03920 n=1 Tax=Homo sapiens
           RepID=Q9H6T2_HUMAN
          Length = 495

 Score =  129 bits (324), Expect = 1e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 377 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 436

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 437 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 494

[47][TOP]
>UniRef100_Q96AG9 POLR1A protein (Fragment) n=1 Tax=Homo sapiens RepID=Q96AG9_HUMAN
          Length = 574

 Score =  129 bits (324), Expect = 1e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 456 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 515

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 516 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 573

[48][TOP]
>UniRef100_B9ZVN9 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B9ZVN9_HUMAN
          Length = 1659

 Score =  129 bits (324), Expect = 1e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1541 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1600

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 1601 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 1658

[49][TOP]
>UniRef100_B7ZKR9 DNA-directed RNA polymerase n=3 Tax=Homo sapiens RepID=B7ZKR9_HUMAN
          Length = 1720

 Score =  129 bits (324), Expect = 1e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1602 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1661

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 1662 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 1719

[50][TOP]
>UniRef100_O95602 DNA-directed RNA polymerase I subunit RPA1 n=1 Tax=Homo sapiens
            RepID=RPA1_HUMAN
          Length = 1720

 Score =  129 bits (324), Expect = 1e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1602 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1661

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  FL  AT+ GS D+L+SP+A L VG+VV  GTG  EL Q +
Sbjct: 1662 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPL 1719

[51][TOP]
>UniRef100_B7S4C1 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
            1055/1 RepID=B7S4C1_PHATR
          Length = 1674

 Score =  129 bits (323), Expect = 2e-28
 Identities = 61/110 (55%), Positives = 83/110 (75%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+ A+   YGVEAAR++I+++++ VF AYGI VDPRHLSLIAD+MT  GGY+A NRIG
Sbjct: 1558 SNDIWAIRCAYGVEAARSSIVQQIRGVFGAYGIEVDPRHLSLIADYMTFDGGYKAMNRIG 1617

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
            +E + S  L+MSFET  HFL  A L   +D+++SP+A + VGR +  GTG
Sbjct: 1618 MEETSSTLLQMSFETTLHFLRQAALVEDMDEMQSPSANIVVGRPIRHGTG 1667

[52][TOP]
>UniRef100_UPI000151B566 hypothetical protein PGUG_03709 n=1 Tax=Pichia guilliermondii ATCC
            6260 RepID=UPI000151B566
          Length = 1632

 Score =  128 bits (322), Expect = 2e-28
 Identities = 62/120 (51%), Positives = 86/120 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+ A+L TYGVEAAR TI+ E+ +VF  Y I V  RHL LI D MT +G Y A NR 
Sbjct: 1512 TSNDIAAVLKTYGVEAARNTIVNEINNVFDRYAISVSSRHLDLIGDMMTREGTYLAFNRQ 1571

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            GI+SS S F+KMS+ET   FLT A L G+ +DL+SP+A++ VG++  +GTG  +++ ++G
Sbjct: 1572 GIDSSTSAFMKMSYETTCQFLTKAVLDGTTEDLESPSAQIVVGKLSNVGTGSFDVLAKMG 1631

[53][TOP]
>UniRef100_A5DKA8 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
            RepID=A5DKA8_PICGU
          Length = 1632

 Score =  128 bits (322), Expect = 2e-28
 Identities = 62/120 (51%), Positives = 86/120 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+ A+L TYGVEAAR TI+ E+ +VF  Y I V  RHL LI D MT +G Y A NR 
Sbjct: 1512 TSNDIAAVLKTYGVEAARNTIVNEINNVFDRYAISVSSRHLDLIGDMMTREGTYLAFNRQ 1571

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            GI+SS S F+KMS+ET   FLT A L G+ +DL+SP+A++ VG++  +GTG  +++ ++G
Sbjct: 1572 GIDSSTSAFMKMSYETTCQFLTKAVLDGTTEDLESPSAQIVVGKLSNVGTGSFDVLAKMG 1631

[54][TOP]
>UniRef100_Q59LW3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q59LW3_CANAL
          Length = 1665

 Score =  128 bits (321), Expect = 3e-28
 Identities = 63/119 (52%), Positives = 85/119 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV+A+L TYGVEAAR TI+ E+  VF  YGI V  RHL LIAD MT +G Y A NR 
Sbjct: 1544 TSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQ 1603

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  ++L+SP+A++ +G++  +GTG  ++  Q+
Sbjct: 1604 GIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQM 1662

[55][TOP]
>UniRef100_C4YCY1 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YCY1_CANAL
          Length = 1577

 Score =  128 bits (321), Expect = 3e-28
 Identities = 63/119 (52%), Positives = 85/119 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV+A+L TYGVEAAR TI+ E+  VF  YGI V  RHL LIAD MT +G Y A NR 
Sbjct: 1456 TSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQ 1515

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  ++L+SP+A++ +G++  +GTG  ++  Q+
Sbjct: 1516 GIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQM 1574

[56][TOP]
>UniRef100_B9W974 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9W974_CANDC
          Length = 1656

 Score =  128 bits (321), Expect = 3e-28
 Identities = 63/119 (52%), Positives = 85/119 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV+A+L TYGVEAAR TI+ E+  VF  YGI V  RHL LIAD MT +G Y A NR 
Sbjct: 1535 TSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQ 1594

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  ++L+SP+A++ +G++  +GTG  ++  Q+
Sbjct: 1595 GIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQM 1653

[57][TOP]
>UniRef100_C5MB39 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
            RepID=C5MB39_CANTT
          Length = 845

 Score =  127 bits (320), Expect = 3e-28
 Identities = 61/119 (51%), Positives = 86/119 (72%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND++A+L TYGVEAAR TI+ E+  VF+ YGI V  RHL LIAD MT +G Y A NR 
Sbjct: 723  TSNDIYAVLKTYGVEAARNTIVNEIYRVFNTYGISVSSRHLDLIADMMTREGTYLAFNRQ 782

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  ++L+SP++++ +G++  +GTG  ++  Q+
Sbjct: 783  GIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSSKIVMGKLASVGTGSFDVFAQM 841

[58][TOP]
>UniRef100_C4YAX5 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4YAX5_CLAL4
          Length = 1248

 Score =  127 bits (320), Expect = 3e-28
 Identities = 64/122 (52%), Positives = 86/122 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+ A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT +G Y A NR G
Sbjct: 1127 SNDISAVLRTYGVEAARNTIVNEINNVFSTYAISVSSRHLDLIADMMTREGSYLAFNRQG 1186

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
            I+SS S F KMS+ET   FLT A L G  +DL+SP+AR+ +G++  +GTG  +++ Q+  
Sbjct: 1187 IDSSTSAFKKMSYETTCQFLTKAVLDGDREDLESPSARIVMGKLSNVGTGSFDVMAQMPT 1246

Query: 156  LA 151
            +A
Sbjct: 1247 VA 1248

[59][TOP]
>UniRef100_UPI0000E804C6 PREDICTED: similar to RNA polymerase I 194 kDa subunit n=1 Tax=Gallus
            gallus RepID=UPI0000E804C6
          Length = 1286

 Score =  127 bits (319), Expect = 5e-28
 Identities = 59/118 (50%), Positives = 88/118 (74%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM   YG+E+A   +++E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1168 SNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFG 1227

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL +AT+ G+ D+L+SP+A L +G+VV+ GTG  +L Q +
Sbjct: 1228 IQSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQPL 1285

[60][TOP]
>UniRef100_UPI0000ECC671 DNA-directed RNA polymerase I subunit RPA1 (EC 2.7.7.6)
           (DNA-directed RNA polymerase I largest subunit) (RNA
           polymerase I 194 kDa subunit) (RPA194) (A190). n=1
           Tax=Gallus gallus RepID=UPI0000ECC671
          Length = 745

 Score =  127 bits (319), Expect = 5e-28
 Identities = 59/118 (50%), Positives = 88/118 (74%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HAM   YG+E+A   +++E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 627 SNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFG 686

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I+SS SP  +M+FET+  FL +AT+ G+ D+L+SP+A L +G+VV+ GTG  +L Q +
Sbjct: 687 IQSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQPL 744

[61][TOP]
>UniRef100_UPI0000ECC670 DNA-directed RNA polymerase I subunit RPA1 (EC 2.7.7.6) (DNA-directed
            RNA polymerase I largest subunit) (RNA polymerase I 194
            kDa subunit) (RPA194) (A190). n=1 Tax=Gallus gallus
            RepID=UPI0000ECC670
          Length = 917

 Score =  127 bits (319), Expect = 5e-28
 Identities = 59/118 (50%), Positives = 88/118 (74%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HAM   YG+E+A   +++E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 799  SNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFG 858

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+SS SP  +M+FET+  FL +AT+ G+ D+L+SP+A L +G+VV+ GTG  +L Q +
Sbjct: 859  IQSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQPL 916

[62][TOP]
>UniRef100_Q6C1S4 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6C1S4_YARLI
          Length = 1628

 Score =  127 bits (319), Expect = 5e-28
 Identities = 61/114 (53%), Positives = 85/114 (74%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++A+L TYGVEAAR T+++E+ +VF  Y I V+ RHL LIAD MT +G Y A NR+G
Sbjct: 1505 SNDIYAVLKTYGVEAARNTMVQEINNVFKTYAITVNLRHLELIADMMTREGTYLAFNRMG 1564

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            ++S+ SPFLKMS+ET   FLT A L G  D L+SP+AR+ +GR+  +GTG  ++
Sbjct: 1565 VDSNTSPFLKMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLSGVGTGSFDV 1618

[63][TOP]
>UniRef100_C5JKG0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis SLH14081
            RepID=C5JKG0_AJEDS
          Length = 1645

 Score =  127 bits (319), Expect = 5e-28
 Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  ML+ YGVEAARA+I+RE+ +VF ++ I VD RHL+LI D MTH GG+RA NR+G
Sbjct: 1526 TNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNRHLNLIGDVMTHAGGFRAFNRMG 1585

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ S SPF+KMSFET   FL DA L    D+L SP++R+ +GRV  +GTG  +++  +G
Sbjct: 1586 LVKDSTSPFMKMSFETTVGFLRDAVLERDWDNLDSPSSRIVMGRVGTIGTGAFDVLAPVG 1645

[64][TOP]
>UniRef100_C5G7Q4 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
            RepID=C5G7Q4_AJEDR
          Length = 1646

 Score =  127 bits (319), Expect = 5e-28
 Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  ML+ YGVEAARA+I+RE+ +VF ++ I VD RHL+LI D MTH GG+RA NR+G
Sbjct: 1527 TNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNRHLNLIGDVMTHAGGFRAFNRMG 1586

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ S SPF+KMSFET   FL DA L    D+L SP++R+ +GRV  +GTG  +++  +G
Sbjct: 1587 LVKDSTSPFMKMSFETTVGFLRDAVLERDWDNLDSPSSRIVMGRVGTIGTGAFDVLAPVG 1646

[65][TOP]
>UniRef100_A8NX07 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NX07_COPC7
          Length = 138

 Score =  127 bits (318), Expect = 6e-28
 Identities = 62/117 (52%), Positives = 83/117 (70%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND++A+L TYGVE ARA I++EV  VF+AY I VD RHL LIAD+MT  GGY+  NR G
Sbjct: 20  SNDIYALLKTYGVEMARAAILKEVGGVFAAYSIQVDRRHLELIADYMTFDGGYKPFNRKG 79

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           + ++ SP LK S+ET A FL+DATL G  DDL +P+  + +GR    GTG  +++ Q
Sbjct: 80  LSTNPSPLLKASYETTAAFLSDATLYGDFDDLTTPSGNIVLGRPNATGTGVFDVLMQ 136

[66][TOP]
>UniRef100_A7EW95 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
            UF-70 RepID=A7EW95_SCLS1
          Length = 1705

 Score =  126 bits (317), Expect = 8e-28
 Identities = 60/119 (50%), Positives = 87/119 (73%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TND+ AML  YGVEA R+TI++E+ SVF+ + I VD RHL+LIAD+MT  GG+   NR 
Sbjct: 1575 STNDIAAMLENYGVEACRSTIVQELHSVFAGHAIQVDMRHLNLIADYMTRGGGFSPFNRN 1634

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G++ SVSPF+KMSFET   FL DA      DDL +P++R+ +GR+ ++GTG  +++ ++
Sbjct: 1635 GMKGSVSPFMKMSFETTVGFLADAVAECDWDDLANPSSRIVIGRMSKVGTGAFDVLTKV 1693

[67][TOP]
>UniRef100_A5DSZ8 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5DSZ8_LODEL
          Length = 1668

 Score =  126 bits (317), Expect = 8e-28
 Identities = 61/119 (51%), Positives = 84/119 (70%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+ ++L TYGVEAAR TI+ E+  VF  YGI V P HL LIAD MT +G Y A NR 
Sbjct: 1545 TSNDIASVLRTYGVEAARNTIVNEIYRVFDTYGISVSPHHLELIADMMTREGSYLAFNRQ 1604

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  ++L+SP+A++ +G++  +GTG  ++  Q+
Sbjct: 1605 GIDSSTSSFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQM 1663

[68][TOP]
>UniRef100_UPI0001760178 PREDICTED: polymerase (RNA) I polypeptide A n=1 Tax=Danio rerio
            RepID=UPI0001760178
          Length = 1692

 Score =  126 bits (316), Expect = 1e-27
 Identities = 62/118 (52%), Positives = 84/118 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VHAM  TYG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1574 SNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFG 1633

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I+S+ SP  +M+FET+  FL  AT+ GS D L SP+A L VG+VV+ GTG  +L Q +
Sbjct: 1634 IQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDLKQPL 1691

[69][TOP]
>UniRef100_UPI0001A2CE6F UPI0001A2CE6F related cluster n=1 Tax=Danio rerio
           RepID=UPI0001A2CE6F
          Length = 732

 Score =  126 bits (316), Expect = 1e-27
 Identities = 62/118 (52%), Positives = 84/118 (71%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +N+VHAM  TYG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 614 SNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFG 673

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I+S+ SP  +M+FET+  FL  AT+ GS D L SP+A L VG+VV+ GTG  +L Q +
Sbjct: 674 IQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDLKQPL 731

[70][TOP]
>UniRef100_A4RCX8 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
            RepID=A4RCX8_MAGGR
          Length = 1719

 Score =  126 bits (316), Expect = 1e-27
 Identities = 63/118 (53%), Positives = 83/118 (70%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TNDV A+L  YGVEA RA I+RE+++VF ++ I VD RHL+LIAD MT  GG+   NR+
Sbjct: 1590 STNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHLNLIADHMTRSGGFTPFNRM 1649

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            G+  +VSPF KMSFET   FL DA L G  DDL +P+ RL +GR+  +GTG  ++  Q
Sbjct: 1650 GLSGNVSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGRLVMGRLGHVGTGAFDVFTQ 1707

[71][TOP]
>UniRef100_Q1E235 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E235_COCIM
          Length = 1690

 Score =  125 bits (315), Expect = 1e-27
 Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N +H ML  YGVEAARA+I+RE+ SVF ++ I VD RHL+LI D MT  GG+R  NR+G
Sbjct: 1571 SNSIHHMLTLYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGFRPFNRMG 1630

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            I + S SPF+KMSFET   FL DA L    D+L +P++R+ +GRV  +GTG  +++  +G
Sbjct: 1631 IVKDSTSPFMKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDVLAPVG 1690

[72][TOP]
>UniRef100_C5PA97 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PA97_COCP7
          Length = 1690

 Score =  125 bits (315), Expect = 1e-27
 Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N +H ML  YGVEAARA+I+RE+ SVF ++ I VD RHL+LI D MT  GG+R  NR+G
Sbjct: 1571 SNSIHHMLTLYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGFRPFNRMG 1630

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            I + S SPF+KMSFET   FL DA L    D+L +P++R+ +GRV  +GTG  +++  +G
Sbjct: 1631 IVKDSTSPFMKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDVLAPVG 1690

[73][TOP]
>UniRef100_UPI000155D146 PREDICTED: similar to RNA polymerase I 194 kDa subunit n=1
           Tax=Ornithorhynchus anatinus RepID=UPI000155D146
          Length = 560

 Score =  125 bits (314), Expect = 2e-27
 Identities = 62/118 (52%), Positives = 85/118 (72%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+HAM  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 442 SNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIQVDPRHLSLVADYMCFEGVYKPLNRYG 501

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           I+S+ SP  +M+FET+  FL  AT  G  D+L+SP+A L VG+VV+ GTG  +L Q +
Sbjct: 502 IQSNSSPLQQMTFETSFKFLKQATHDGVSDELRSPSACLVVGKVVKGGTGLFDLKQPL 559

[74][TOP]
>UniRef100_UPI00003BD73B hypothetical protein DEHA0C11682g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD73B
          Length = 1644

 Score =  125 bits (314), Expect = 2e-27
 Identities = 62/119 (52%), Positives = 85/119 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            ++ND+ A+L TYGVEAAR TI+ EVQ+VF  Y I V  RHL LI D MT +G Y A NR 
Sbjct: 1523 SSNDIAAVLRTYGVEAARNTIVNEVQNVFDRYAIAVSSRHLDLIGDMMTREGTYLAFNRQ 1582

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  +DL+SP+AR+ +G++  +GTG  +++ ++
Sbjct: 1583 GIDSSTSAFMKMSYETTCQFLTKAVLDGEREDLESPSARIVMGKLSNVGTGSFDVLARM 1641

[75][TOP]
>UniRef100_Q9SVY0 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
            RepID=Q9SVY0_ARATH
          Length = 1670

 Score =  125 bits (314), Expect = 2e-27
 Identities = 61/119 (51%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
            +N +H ML  +GVEAAR TI+RE+  VF +YGI V  RHL+LIAD+MT  GGYR  +R+ 
Sbjct: 1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI  S SPF +M+FETA  F+  A   G  D L++P+AR+C+G     GTGC +L+Q++
Sbjct: 1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRV 1668

[76][TOP]
>UniRef100_Q759A3 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
            RepID=Q759A3_ASHGO
          Length = 1640

 Score =  125 bits (314), Expect = 2e-27
 Identities = 63/119 (52%), Positives = 84/119 (70%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1518 TSNDVSAVLKTYGVEAARNTIVNEINNVFSRYAISVSYRHLDLIADMMTRQGTYLAFNRQ 1577

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+ESS S  +KMS+ET   FLT A L    ++LKSP+A+L +G++  +GTG  +++ ++
Sbjct: 1578 GMESSTSSLMKMSYETTCQFLTKAVLDNEREELKSPSAKLVLGKLNSVGTGAFDILAKV 1636

[77][TOP]
>UniRef100_B5RT96 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RT96_DEBHA
          Length = 1644

 Score =  125 bits (314), Expect = 2e-27
 Identities = 62/119 (52%), Positives = 85/119 (71%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            ++ND+ A+L TYGVEAAR TI+ EVQ+VF  Y I V  RHL LI D MT +G Y A NR 
Sbjct: 1523 SSNDIAAVLRTYGVEAARNTIVNEVQNVFDRYAIAVSSRHLDLIGDMMTREGTYLAFNRQ 1582

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+SS S F+KMS+ET   FLT A L G  +DL+SP+AR+ +G++  +GTG  +++ ++
Sbjct: 1583 GIDSSTSAFMKMSYETTCQFLTKAVLDGEREDLESPSARIVMGKLSNVGTGSFDVLARM 1641

[78][TOP]
>UniRef100_B8M0T3 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8M0T3_TALSN
          Length = 1689

 Score =  125 bits (313), Expect = 2e-27
 Identities = 62/119 (52%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAAR+TI+RE+  VFS + I VD RHL+LI D MTH GG+++ +R G
Sbjct: 1570 TNSIHDMLIFYGVEAARSTIIREMSDVFSGHSITVDNRHLNLIGDVMTHSGGFKSYSRNG 1629

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             I+ S SPF K SFET+  F+ DA L    DDLKSP++R+ VGR+  +GTG  +++  +
Sbjct: 1630 LIKESNSPFSKSSFETSVGFMRDAVLERDFDDLKSPSSRIVVGRLGNVGTGAFDILAPV 1688

[79][TOP]
>UniRef100_UPI000023EF7C hypothetical protein FG04291.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023EF7C
          Length = 1694

 Score =  124 bits (312), Expect = 3e-27
 Identities = 61/118 (51%), Positives = 83/118 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L  YGVEAAR  I+ E+  VF ++GI VD RHL+LI D MT  GG+   NR+G
Sbjct: 1568 TNDIAAVLEVYGVEAARQNIVNELDGVFGSHGIKVDNRHLNLIGDHMTRNGGFTPFNRMG 1627

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ +VSPF KMSFET   FL DA L G  DDL +P+ RL +GR+ ++GTG  +++ Q+
Sbjct: 1628 LKGNVSPFTKMSFETTLGFLKDAVLDGDWDDLSTPSGRLVMGRLGKVGTGGFDVLAQL 1685

[80][TOP]
>UniRef100_Q8WZX8 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q8WZX8_NEUCR
          Length = 1701

 Score =  124 bits (312), Expect = 3e-27
 Identities = 60/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+  +L  YGVEAAR +I+RE+  VF  +GIGVDPRHL+LI D+MT  GG+   NR+G
Sbjct: 1575 TNDIAQVLEIYGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDYMTRNGGFTPFNRMG 1634

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +  +VSPF KMS+ET   FL DA L G  D L +P+ RL VG++   GTG  ++  ++
Sbjct: 1635 LTGNVSPFTKMSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGVTGTGSFDVFTKV 1692

[81][TOP]
>UniRef100_C9SE91 DNA-directed RNA polymerase I subunit RPA1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SE91_9PEZI
          Length = 1686

 Score =  124 bits (311), Expect = 4e-27
 Identities = 61/118 (51%), Positives = 83/118 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L  YGVEA R+ I+ E+ +VF  +GI VD RHL+LIAD+MT  GGY   NR G
Sbjct: 1559 TNDIAAVLDVYGVEACRSNIVLELGNVFGGHGISVDNRHLNLIADYMTRNGGYTPFNRNG 1618

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +  +VSPF KMSFET   FL DA L G  DDL +P++RL +GR+ + GTG  +++ ++
Sbjct: 1619 LRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLTTPSSRLVMGRLGKTGTGAFDVLTKL 1676

[82][TOP]
>UniRef100_C6HCI4 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
            RepID=C6HCI4_AJECH
          Length = 1676

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA I+RE+ +VF  + I VD RHL+LI D MTH G +RA NR+G
Sbjct: 1557 TNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMG 1616

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ S SPF+KMSFET   FL DA L    D+L  P++R+ +GRV  +GTG  +++  +G
Sbjct: 1617 LVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDVLAPVG 1676

[83][TOP]
>UniRef100_C4R1Z5 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R1Z5_PICPG
          Length = 1640

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/118 (52%), Positives = 84/118 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND +A+L TYGVEAAR TI+ E+ +VF  Y I V  RHL LIAD MT QG Y A NR G
Sbjct: 1518 SNDTYAVLRTYGVEAARNTIVNEINNVFGRYAIAVSSRHLDLIADMMTRQGTYLAFNRQG 1577

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            IE+S S F+KMS+ET   FLT A L    ++L+SP+ARL VG++ ++GTG  +++ ++
Sbjct: 1578 IENSTSSFMKMSYETTCQFLTKAVLDNDREELESPSARLVVGKLSKVGTGIFDVMARM 1635

[84][TOP]
>UniRef100_C0NL49 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
            RepID=C0NL49_AJECG
          Length = 1697

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA I+RE+ +VF  + I VD RHL+LI D MTH G +RA NR+G
Sbjct: 1578 TNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMG 1637

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ S SPF+KMSFET   FL DA L    D+L  P++R+ +GRV  +GTG  +++  +G
Sbjct: 1638 LVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDVLAPVG 1697

[85][TOP]
>UniRef100_B0CXW7 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0CXW7_LACBS
          Length = 1711

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/118 (52%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++A+L TYGVE ARA I+RE+  +F AY I VD RHL LIAD+MT  GGY+  NR G
Sbjct: 1593 SNDIYAILKTYGVEMARAAILREMGGIFGAYNIQVDRRHLELIADYMTFDGGYKPFNRKG 1652

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I ++ SP LK S+ET   FL+DATL G  DDL +P+  + +GR    GTG  ++V  I
Sbjct: 1653 ISTNPSPLLKASYETTGAFLSDATLYGDFDDLSTPSGNIVLGRPNCTGTGVFDVVMGI 1710

[86][TOP]
>UniRef100_A7TPJ8 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
            70294 RepID=A7TPJ8_VANPO
          Length = 1656

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/119 (52%), Positives = 84/119 (70%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1534 TSNDVSAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1593

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+E+S S  +KMS+ET   FLT A L    ++LKSP+AR+ +G++  +GTG  +++ ++
Sbjct: 1594 GMETSTSSLMKMSYETTCQFLTKAVLDNENEELKSPSARIVLGKLNNVGTGAFDVLSKV 1652

[87][TOP]
>UniRef100_A6R8S3 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6R8S3_AJECN
          Length = 1573

 Score =  124 bits (311), Expect = 4e-27
 Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA I+RE+ +VF  + I VD RHL+LI D MTH G +RA NR+G
Sbjct: 1454 TNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMG 1513

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ S SPF+KMSFET   FL DA L    D+L  P++R+ +GRV  +GTG  +++  +G
Sbjct: 1514 LVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDVLAPVG 1573

[88][TOP]
>UniRef100_A9UY22 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=A9UY22_MONBE
          Length = 1592

 Score =  124 bits (310), Expect = 5e-27
 Identities = 62/117 (52%), Positives = 81/117 (69%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            NDV+AM  TYGVEA + +I+RE+ +VF  YGI V+ RHLSL+AD+M  +G YR  NRI +
Sbjct: 1467 NDVNAMFETYGVEAGQRSIIRELSAVFDVYGIAVNHRHLSLVADYMAFEGDYRGMNRISM 1526

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             SS  PFLKMSFE+   FL  +TLRG  D L+S ++RL +G V   GTG   +VQ +
Sbjct: 1527 RSSTDPFLKMSFESTTDFLRASTLRGDHDTLQSNSSRLVLGAVTAGGTGVCSVVQPL 1583

[89][TOP]
>UniRef100_C8ZH93 Rpa190p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8ZH93_YEAST
          Length = 1664

 Score =  124 bits (310), Expect = 5e-27
 Identities = 64/123 (52%), Positives = 84/123 (68%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1542 TSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1601

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            G+E+S S F+KMS+ET   FLT A L    + L SP+AR+ VG++  +GTG  +++ ++ 
Sbjct: 1602 GMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVP 1661

Query: 159  GLA 151
              A
Sbjct: 1662 NAA 1664

[90][TOP]
>UniRef100_B6QC93 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QC93_PENMQ
          Length = 1689

 Score =  124 bits (310), Expect = 5e-27
 Identities = 62/115 (53%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAAR+TI+RE+  VFS + I VD RHL+LI D MTH GG+++ +R G
Sbjct: 1570 TNSIHDMLIYYGVEAARSTIIREMSDVFSGHSITVDNRHLNLIGDVMTHSGGFKSYSRNG 1629

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
             I  S SPF K SFET+  F+ DA L    DDLKSP++R+ VGR+  +GTG  ++
Sbjct: 1630 LIRESNSPFSKSSFETSVGFMRDAVLERDFDDLKSPSSRIVVGRLGNVGTGAFDI 1684

[91][TOP]
>UniRef100_B3LK00 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
            RepID=B3LK00_YEAS1
          Length = 1664

 Score =  124 bits (310), Expect = 5e-27
 Identities = 64/123 (52%), Positives = 84/123 (68%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1542 TSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1601

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            G+E+S S F+KMS+ET   FLT A L    + L SP+AR+ VG++  +GTG  +++ ++ 
Sbjct: 1602 GMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVP 1661

Query: 159  GLA 151
              A
Sbjct: 1662 NAA 1664

[92][TOP]
>UniRef100_P10964 DNA-directed RNA polymerase I subunit RPA1 n=4 Tax=Saccharomyces
            cerevisiae RepID=RPA1_YEAST
          Length = 1664

 Score =  124 bits (310), Expect = 5e-27
 Identities = 64/123 (52%), Positives = 84/123 (68%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1542 TSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1601

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            G+E+S S F+KMS+ET   FLT A L    + L SP+AR+ VG++  +GTG  +++ ++ 
Sbjct: 1602 GMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVP 1661

Query: 159  GLA 151
              A
Sbjct: 1662 NAA 1664

[93][TOP]
>UniRef100_B0EDI6 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
            RepID=B0EDI6_ENTDI
          Length = 1568

 Score =  123 bits (309), Expect = 7e-27
 Identities = 56/118 (47%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV+A+L  YGVEAAR  ++ E+ SVF AYGI VDPRHL+L+AD+MT++G Y++ NR G
Sbjct: 1448 TNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPRHLNLVADYMTYEGEYKSLNRSG 1507

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ + SPF K++FET+  FL    + G  D+LKSP+  + +G+ +  GTG  ++  ++
Sbjct: 1508 MDHNPSPFTKITFETSLGFLAKTCVSGQKDNLKSPSGSVVMGKNMVFGTGAFDIYTEL 1565

[94][TOP]
>UniRef100_C4JYF5 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JYF5_UNCRE
          Length = 1666

 Score =  123 bits (309), Expect = 7e-27
 Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N +H ML  YGVEAARA+I+RE+ SVF ++ I VD RHL+LI D MT  GGYR  NR+G
Sbjct: 1547 SNSIHHMLTFYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGYRPFNRMG 1606

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            I + S SP  KMSFET   FL DA L    D+L +P++R+ +GRV  +GTG  +++  +G
Sbjct: 1607 IVKDSTSPLTKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDVLAPVG 1666

[95][TOP]
>UniRef100_C5FC46 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FC46_NANOT
          Length = 1680

 Score =  123 bits (308), Expect = 9e-27
 Identities = 65/120 (54%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N V  ML  YGVEAARATI+ EV +VF  +GI VD RHL+LIAD MT  GGYR  NR+G
Sbjct: 1561 SNSVSHMLGLYGVEAARATIVNEVGAVFDGHGIKVDNRHLTLIADVMTQTGGYRPFNRMG 1620

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
            I + S SP +KMSFET   FL DA L    D+L  P++R+ VGRV  +GTG  +++  +G
Sbjct: 1621 IVKDSTSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDVLAPVG 1680

[96][TOP]
>UniRef100_C1GUK2 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1GUK2_PARBA
          Length = 1691

 Score =  123 bits (308), Expect = 9e-27
 Identities = 61/120 (50%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA+I+RE+ +VF+++ I VD RHL+LI D MTH GG+RA NR+G
Sbjct: 1572 TNSIADMLVWYGVEAARASIIREMATVFNSHSISVDNRHLNLIGDVMTHAGGFRAFNRMG 1631

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ + SP +KMSFET   FL DA L    D+L  P+ R+ +GRV  +GTG  +++  +G
Sbjct: 1632 LVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRVGTVGTGAFDVLAPVG 1691

[97][TOP]
>UniRef100_C7YZ78 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YZ78_NECH7
          Length = 1674

 Score =  122 bits (307), Expect = 1e-26
 Identities = 59/118 (50%), Positives = 84/118 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L  YGVEAAR+ I++E+  VF ++GI VD RHL+LI D MT  GG+   NR+G
Sbjct: 1548 TNDIAAVLAVYGVEAARSNIVQELAGVFGSHGIKVDNRHLNLIGDHMTRNGGFTPFNRMG 1607

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ +VSPF KMSFET   FL DA L G  DDL +P+ R  +G++ ++GTG  +++ Q+
Sbjct: 1608 LKGNVSPFTKMSFETTLSFLKDAVLDGDWDDLATPSGRSVMGKLGKVGTGGFDVLAQL 1665

[98][TOP]
>UniRef100_C1FYI4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1FYI4_PARBD
          Length = 1691

 Score =  122 bits (307), Expect = 1e-26
 Identities = 61/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA+I+RE+ +VF ++ I VD RHL+LI D MTH GG+RA NR+G
Sbjct: 1572 TNSIADMLVWYGVEAARASIIREMATVFDSHSISVDNRHLNLIGDVMTHAGGFRAFNRMG 1631

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ + SP +KMSFET   FL DA L    D+L  P+ R+ +GRV  +GTG  +++  +G
Sbjct: 1632 LVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRVGTVGTGAFDVLAPVG 1691

[99][TOP]
>UniRef100_C0S421 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0S421_PARBP
          Length = 1691

 Score =  122 bits (307), Expect = 1e-26
 Identities = 61/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  MLV YGVEAARA+I+RE+ +VF ++ I VD RHL+LI D MTH GG+RA NR+G
Sbjct: 1572 TNSIADMLVWYGVEAARASIIREMATVFDSHSISVDNRHLNLIGDVMTHAGGFRAFNRMG 1631

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
             ++ + SP +KMSFET   FL DA L    D+L  P+ R+ +GRV  +GTG  +++  +G
Sbjct: 1632 LVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRVGTVGTGAFDVLAPVG 1691

[100][TOP]
>UniRef100_UPI000179161A PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
            n=1 Tax=Acyrthosiphon pisum RepID=UPI000179161A
          Length = 1606

 Score =  122 bits (306), Expect = 1e-26
 Identities = 57/116 (49%), Positives = 84/116 (72%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND+  ML TYG+EAA   I++EV++VF  YGI VD RHLSLIAD+MT+ G Y+A NR+G+
Sbjct: 1491 NDIQMMLNTYGIEAANRVIIKEVKNVFKVYGINVDTRHLSLIADYMTYDGKYKALNRVGM 1550

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
                SP  +MSFE+  ++L  +T+RG  D+L SP++ L +G+  ++G+G V+L+ Q
Sbjct: 1551 NGCPSPLQQMSFESTLNYLKKSTVRGLKDNLVSPSSTLIIGQQAQIGSGLVKLLWQ 1606

[101][TOP]
>UniRef100_UPI0000D56583 PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
            n=1 Tax=Tribolium castaneum RepID=UPI0000D56583
          Length = 1619

 Score =  122 bits (306), Expect = 1e-26
 Identities = 59/117 (50%), Positives = 83/117 (70%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND+H M  TYG+EAA   I++EVQ VF+ YGI VDPRHLSLIAD+MT  G +   +R G+
Sbjct: 1503 NDIHKMAETYGIEAAMKIIVKEVQDVFNVYGIKVDPRHLSLIADYMTFNGTFEPLSRKGM 1562

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ESS SP  +M+FE++  FL +AT+ G  D+L +P++ L VG+    GTGC E++ ++
Sbjct: 1563 ESSASPLQQMTFESSLTFLRNATIGGKRDNLTNPSSCLMVGKPCVTGTGCFEVLHKM 1619

[102][TOP]
>UniRef100_C4M3E6 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
            RepID=C4M3E6_ENTHI
          Length = 1570

 Score =  122 bits (306), Expect = 1e-26
 Identities = 55/118 (46%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV+A+L  YGVEAAR  ++ E+ SVF AYGI VDPRHL+L+AD+MT++G Y++ NR G
Sbjct: 1450 TNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPRHLNLVADYMTYEGEYKSLNRSG 1509

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ + SPF K++FET+  FL    + G  D+L+SP+  + +G+ +  GTG  ++  ++
Sbjct: 1510 MDHNPSPFTKITFETSLGFLAKTCVSGQKDNLRSPSGSVVMGKNMVFGTGAFDIYTEL 1567

[103][TOP]
>UniRef100_UPI0001867C20 hypothetical protein BRAFLDRAFT_129163 n=1 Tax=Branchiostoma floridae
            RepID=UPI0001867C20
          Length = 1546

 Score =  121 bits (304), Expect = 2e-26
 Identities = 57/97 (58%), Positives = 76/97 (78%)
 Frame = -2

Query: 453  REVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGIESSVSPFLKMSFETAAHFLT 274
            +E++ VF+ YGI VDPRHLSL+AD+MT++G Y+  NR GI+S+ SPF +MSFET+  FL 
Sbjct: 1449 QEIKEVFAVYGIEVDPRHLSLVADYMTYEGVYKPFNRTGIQSNASPFQQMSFETSMQFLK 1508

Query: 273  DATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +AT+ G+ DDLKSP+ARL  GR V  GTGC EL+Q +
Sbjct: 1509 EATISGAKDDLKSPSARLVTGRPVMGGTGCFELLQPL 1545

[104][TOP]
>UniRef100_Q6CIX4 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CIX4_KLULA
          Length = 1653

 Score =  121 bits (304), Expect = 2e-26
 Identities = 62/117 (52%), Positives = 82/117 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR G
Sbjct: 1534 SNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQG 1593

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            +ESS S  +KMS+ET   FLT A L    ++LKSP+A++ +G++  +GTG  +L+ +
Sbjct: 1594 MESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSK 1650

[105][TOP]
>UniRef100_C5DV78 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DV78_ZYGRC
          Length = 1667

 Score =  121 bits (303), Expect = 3e-26
 Identities = 62/118 (52%), Positives = 83/118 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV A+L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR G
Sbjct: 1546 SNDVAAVLRTYGVEAARNTIVYEINNVFSRYAISVSFRHLDLIADLMTRQGNYLAFNRQG 1605

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E+S S F+KMS+ET   FLT A L    + L+SP+AR+ +G++  +GTG  +++ +I
Sbjct: 1606 METSTSSFMKMSYETTCQFLTKAVLDNDREKLQSPSARIVLGKLNNVGTGAFDVLTKI 1663

[106][TOP]
>UniRef100_A1CP71 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CP71_ASPCL
          Length = 1734

 Score =  120 bits (302), Expect = 4e-26
 Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML  YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1615 TNSIHHMLTLYGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1674

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ S SP  KMSFET   FL DA +    D+LKSP++R+ VGR   +GTG  +++  +
Sbjct: 1675 LVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVVGRAGMVGTGAFDVLAPV 1733

[107][TOP]
>UniRef100_B0XG16 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XG16_CULQU
          Length = 1692

 Score =  120 bits (301), Expect = 6e-26
 Identities = 57/118 (48%), Positives = 87/118 (73%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++A+  TYG+EAA   I++EVQ+VF  YGI ++PRHL L+AD+MT  G +++ +R G
Sbjct: 1573 SNDIYAVAQTYGIEAASRVIVKEVQNVFKVYGIEINPRHLLLVADYMTADGTFKSLSRKG 1632

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E++VSP  ++SFE++  FL  ATL+G+ D L SP++RL VG++ + GTG   L  QI
Sbjct: 1633 MEANVSPLQQISFESSIQFLKAATLKGNGDHLDSPSSRLMVGKLCKSGTGSFGLYNQI 1690

[108][TOP]
>UniRef100_A7ARZ5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7ARZ5_BABBO
          Length = 2016

 Score =  120 bits (301), Expect = 6e-26
 Identities = 61/117 (52%), Positives = 79/117 (67%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND+  +   YG+EAARA+I+ E+Q+VFS YGI VD RHLSLIADFMT++G  R  NR G+
Sbjct: 1864 NDIATVYRYYGIEAARASIVSELQNVFSVYGINVDYRHLSLIADFMTNKGDIRTFNRYGM 1923

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
                SP L+MSFE+   F+ DA  RG  DDL SPA  +  GR + LG G  +++ QI
Sbjct: 1924 ARHASPLLQMSFESTLKFIMDACERGGYDDLGSPAGAIVAGRPIRLGGGLCKVLPQI 1980

[109][TOP]
>UniRef100_Q6FV16 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FV16_CANGA
          Length = 1643

 Score =  120 bits (301), Expect = 6e-26
 Identities = 59/119 (49%), Positives = 83/119 (69%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+ ++L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1523 TSNDIASVLQTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1582

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+E+S S  +KMS+ET   FLT A L    + L+SP+AR+ +G++  +GTG  +++ ++
Sbjct: 1583 GMETSTSSLMKMSYETTCQFLTKAVLDNEREQLESPSARIVLGKLNNVGTGAFDILSKV 1641

[110][TOP]
>UniRef100_C5DG15 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5DG15_LACTC
          Length = 1654

 Score =  120 bits (301), Expect = 6e-26
 Identities = 60/119 (50%), Positives = 83/119 (69%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV ++L TYGVEAAR TI+ E+ +VFS Y I V  RHL LIAD MT QG Y A NR 
Sbjct: 1532 TSNDVASVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQ 1591

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+E+S S  +KMS+ET   FLT A L    ++L SP+AR+ +G++  +GTG  +++ ++
Sbjct: 1592 GMETSTSSLMKMSYETTCQFLTKAVLDNECENLDSPSARIVLGKLNNVGTGAFDVLAKV 1650

[111][TOP]
>UniRef100_UPI00015B5184 PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
            n=1 Tax=Nasonia vitripennis RepID=UPI00015B5184
          Length = 1694

 Score =  119 bits (298), Expect = 1e-25
 Identities = 61/125 (48%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ +  TYG+EAA   I++EV+ VF  YGI VD RHLSLIAD+MT +G ++  +R G
Sbjct: 1561 SNDIYGISQTYGIEAANRVIVKEVKDVFKMYGITVDTRHLSLIADYMTFEGRFQPLSRKG 1620

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGC----VELVQ 169
            +E S SP  +MSFE++ +FL +ATL+G  DDL SP++RL +G+    GTG     V++ Q
Sbjct: 1621 MEDSASPLQQMSFESSLNFLKNATLQGKNDDLTSPSSRLMLGQPCNSGTGAFSLMVDIQQ 1680

Query: 168  QIGGL 154
            QI  L
Sbjct: 1681 QISQL 1685

[112][TOP]
>UniRef100_UPI00016E3D4E UPI00016E3D4E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E3D4E
          Length = 1681

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VH M  TYG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 1563 SNEVHTMATTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGIYKPLNRHA 1622

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  F+  AT+ GS D L SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1623 ICSNSSPLQQMTFETSYRFIKQATMLGSHDRLVSPSASLVVGKVVKGGTGLFELKQPL 1680

[113][TOP]
>UniRef100_UPI00016E3D4D UPI00016E3D4D related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E3D4D
          Length = 1691

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VH M  TYG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 1573 SNEVHTMATTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGIYKPLNRHA 1632

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  F+  AT+ GS D L SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1633 ICSNSSPLQQMTFETSYRFIKQATMLGSHDRLVSPSASLVVGKVVKGGTGLFELKQPL 1690

[114][TOP]
>UniRef100_UPI00016E3D4C UPI00016E3D4C related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E3D4C
          Length = 1713

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VH M  TYG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 1595 SNEVHTMATTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGIYKPLNRHA 1654

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  F+  AT+ GS D L SP+A L VG+VV+ GTG  EL Q +
Sbjct: 1655 ICSNSSPLQQMTFETSYRFIKQATMLGSHDRLVSPSASLVVGKVVKGGTGLFELKQPL 1712

[115][TOP]
>UniRef100_Q5CFH2 RNA polymerase A/beta'/A'' subunit n=1 Tax=Cryptosporidium hominis
           RepID=Q5CFH2_CRYHO
          Length = 472

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/110 (54%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
 Frame = -2

Query: 513 NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG- 337
           ND+  +   YGVEAAR  I+ E+++VFS YGI VD RHL+LI+D +T  G  R  NR+G 
Sbjct: 306 NDIQTVYKYYGVEAARHCIINELRNVFSVYGINVDYRHLTLISDSITASGKLRVFNRMGT 365

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
           I  ++SPFL+MSFET+  FLT+A LRG++D+LKSPA+ + VG++V +GTG
Sbjct: 366 ISYNISPFLQMSFETSMKFLTEACLRGALDNLKSPASSISVGKMVSVGTG 415

[116][TOP]
>UniRef100_Q6MYA4 DNA-directed RNA polymerase n=1 Tax=Aspergillus fumigatus
            RepID=Q6MYA4_ASPFU
          Length = 1692

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1573 TNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1632

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ S SP  KMSFET   FL DA +    D+LKSP++R+  GR   +GTG  +++  +
Sbjct: 1633 LVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGTGAFDVLAPV 1691

[117][TOP]
>UniRef100_Q4WS60 DNA-directed RNA polymerase n=1 Tax=Aspergillus fumigatus
            RepID=Q4WS60_ASPFU
          Length = 1680

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1561 TNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1620

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ S SP  KMSFET   FL DA +    D+LKSP++R+  GR   +GTG  +++  +
Sbjct: 1621 LVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGTGAFDVLAPV 1679

[118][TOP]
>UniRef100_Q4PB85 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4PB85_USTMA
          Length = 1795

 Score =  119 bits (297), Expect = 2e-25
 Identities = 61/114 (53%), Positives = 76/114 (66%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND+ A+L TYGVEAARA I+ E++ +F  YGI V PRHL LIAD+ T  GG+R  NR G
Sbjct: 1670 TNDIGAVLHTYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTAAGGFRPFNRSG 1729

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            I  S S  LK SFE    F+  + L G VD LK+P+++L VGR V  GTG  E+
Sbjct: 1730 ISESSSTLLKASFEMTMAFIGGSALHGEVDMLKTPSSKLVVGRPVNSGTGTPEI 1783

[119][TOP]
>UniRef100_B0XRP3 DNA-directed RNA polymerase n=1 Tax=Aspergillus fumigatus A1163
            RepID=B0XRP3_ASPFC
          Length = 1680

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1561 TNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1620

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ S SP  KMSFET   FL DA +    D+LKSP++R+  GR   +GTG  +++  +
Sbjct: 1621 LVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGTGAFDVLAPV 1679

[120][TOP]
>UniRef100_A1D226 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D226_NEOFI
          Length = 1681

 Score =  119 bits (297), Expect = 2e-25
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML+ YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1562 TNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1621

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ S SP  KMSFET   FL DA +    D+LKSP++R+  GR   +GTG  +++  +
Sbjct: 1622 LVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGTGAFDVLAPV 1680

[121][TOP]
>UniRef100_B9QJU7 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii VEG
            RepID=B9QJU7_TOXGO
          Length = 2676

 Score =  118 bits (295), Expect = 3e-25
 Identities = 60/109 (55%), Positives = 79/109 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV A+L  YG+EAAR  + RE++ VFSAYGI VD RHL+LIADFMTH G  R  NR+G
Sbjct: 2438 TNDVRAVLKYYGIEAARVCLARELERVFSAYGIKVDYRHLALIADFMTHGGTLRPFNRLG 2497

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGT 190
            + +S +PFL+MS+ET+  FLT+A  R +VD L +P+  L VG    +G+
Sbjct: 2498 MAASNAPFLQMSYETSFKFLTEACERAAVDSLSTPSGSLVVGAPSVIGS 2546

[122][TOP]
>UniRef100_B9PNT4 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1
            RepID=B9PNT4_TOXGO
          Length = 2626

 Score =  118 bits (295), Expect = 3e-25
 Identities = 60/109 (55%), Positives = 79/109 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV A+L  YG+EAAR  + RE++ VFSAYGI VD RHL+LIADFMTH G  R  NR+G
Sbjct: 2388 TNDVRAVLKYYGIEAARVCLARELERVFSAYGIKVDYRHLALIADFMTHGGTLRPFNRLG 2447

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGT 190
            + +S +PFL+MS+ET+  FLT+A  R +VD L +P+  L VG    +G+
Sbjct: 2448 MAASNAPFLQMSYETSFKFLTEACERAAVDSLSTPSGSLVVGAPSVIGS 2496

[123][TOP]
>UniRef100_B6KG86 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
            RepID=B6KG86_TOXGO
          Length = 2768

 Score =  118 bits (295), Expect = 3e-25
 Identities = 60/109 (55%), Positives = 79/109 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TNDV A+L  YG+EAAR  + RE++ VFSAYGI VD RHL+LIADFMTH G  R  NR+G
Sbjct: 2530 TNDVRAVLKYYGIEAARVCLARELERVFSAYGIKVDYRHLALIADFMTHGGTLRPFNRLG 2589

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGT 190
            + +S +PFL+MS+ET+  FLT+A  R +VD L +P+  L VG    +G+
Sbjct: 2590 MAASNAPFLQMSYETSFKFLTEACERAAVDSLSTPSGSLVVGAPSVIGS 2638

[124][TOP]
>UniRef100_UPI00017B5891 UPI00017B5891 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B5891
          Length = 1708

 Score =  117 bits (294), Expect = 4e-25
 Identities = 59/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VHAM   YG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 1590 SNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHA 1649

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            I S+ SP  +M+FET+  F+  AT+ GS D L SP+A L VG++V+ GTG  EL Q +
Sbjct: 1650 IRSNSSPLQQMTFETSYKFIKQATMLGSHDRLASPSASLVVGKLVKGGTGLFELKQPL 1707

[125][TOP]
>UniRef100_Q23DD6 DNA-directed RNA polymerase n=1 Tax=Tetrahymena thermophila SB210
            RepID=Q23DD6_TETTH
          Length = 1727

 Score =  117 bits (294), Expect = 4e-25
 Identities = 53/118 (44%), Positives = 83/118 (70%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+ A+   YG+EAAR  I++E+ +VF  YG+ VD RHL LIAD++T  G  +A NR+ 
Sbjct: 1610 SNDIAALNKCYGIEAARNAIVKEIVTVFGVYGVVVDYRHLYLIADYLTFSGEMKAMNRVW 1669

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ S+SPFLKMSFET   FLT+A     +D L +P++ + +GRV ++GTG  +++ ++
Sbjct: 1670 MDESISPFLKMSFETCVKFLTNAATNNEIDTLSTPSSSIVLGRVPQVGTGVFDILHKV 1727

[126][TOP]
>UniRef100_Q16K29 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q16K29_AEDAE
          Length = 1686

 Score =  117 bits (294), Expect = 4e-25
 Identities = 55/122 (45%), Positives = 87/122 (71%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++A+  TYG+EAA   I++EVQ+VF  YGI ++PRHL L+AD+MT  G +++ +R G
Sbjct: 1565 SNDIYAIAQTYGIEAAARVIVKEVQNVFKVYGITINPRHLLLVADYMTADGTFKSMSRKG 1624

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
            +ES+VSP  ++SFE++  FL  A L+G+ D L SP++RL VG++ + GTG   +  ++  
Sbjct: 1625 MESNVSPLQQISFESSIQFLKAAALKGNGDHLDSPSSRLMVGQLCKSGTGAFSVYSKVQA 1684

Query: 156  LA 151
             A
Sbjct: 1685 AA 1686

[127][TOP]
>UniRef100_Q0D0E1 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D0E1_ASPTN
          Length = 1691

 Score =  117 bits (293), Expect = 5e-25
 Identities = 59/119 (49%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML  YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+RA NR G
Sbjct: 1572 TNSIHHMLQFYGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDVMTQSGGFRAFNRNG 1631

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++   SPF KMSFET   FL +A +    D+L+SP++R+ VGR   +GTG  +++  +
Sbjct: 1632 LVKDGTSPFAKMSFETTVGFLKEAVIERDFDNLRSPSSRIVVGRPGIVGTGAFDVLAPV 1690

[128][TOP]
>UniRef100_B4P775 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4P775_DROYA
          Length = 1642

 Score =  117 bits (292), Expect = 6e-25
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1524 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1583

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1584 MEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

[129][TOP]
>UniRef100_B4LLN1 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4LLN1_DROVI
          Length = 1648

 Score =  117 bits (292), Expect = 6e-25
 Identities = 60/118 (50%), Positives = 81/118 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1530 SNDIHAIARTYGIEAANQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1589

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL +A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1590 MEHSSSPLQQMSFESSLQFLRNAAGFGRPDELNSPSSRLMVGLPVRNGTGAFELLTKI 1647

[130][TOP]
>UniRef100_P91875 DNA-directed RNA polymerase I subunit RPA1 n=1 Tax=Drosophila
            melanogaster RepID=RPA1_DROME
          Length = 1642

 Score =  117 bits (292), Expect = 6e-25
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1524 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1583

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1584 MEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

[131][TOP]
>UniRef100_UPI000180C7E3 PREDICTED: similar to RNA polymerase I large subunit n=1 Tax=Ciona
            intestinalis RepID=UPI000180C7E3
          Length = 1547

 Score =  116 bits (291), Expect = 8e-25
 Identities = 58/122 (47%), Positives = 83/122 (68%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N VH++   YG+EAAR  +++E+ +VF+ YGI VD RHL+LI D+M ++G Y+  NR+ 
Sbjct: 1426 SNCVHSVAQMYGIEAARRVVVKEIANVFAVYGIEVDQRHLNLIGDYMCYEGVYKPFNRMA 1485

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
            IES VSP  +MSFET   FL  A L G  D L+SP+AR+  G+VV+ GTG   L+  +  
Sbjct: 1486 IESCVSPLQQMSFETTMKFLNSAALYGLQDRLQSPSARIVTGQVVKGGTGNFSLLCPVAK 1545

Query: 156  LA 151
            +A
Sbjct: 1546 MA 1547

[132][TOP]
>UniRef100_Q291D4 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q291D4_DROPS
          Length = 1647

 Score =  116 bits (291), Expect = 8e-25
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1529 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1588

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  DDL SP++RL VG  V  GTG  +L+ +I
Sbjct: 1589 MEHSSSPLQQMSFESSLQFLKSAAGFGRSDDLNSPSSRLMVGLPVRNGTGAFDLLTKI 1646

[133][TOP]
>UniRef100_B4GAV6 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4GAV6_DROPE
          Length = 1647

 Score =  116 bits (291), Expect = 8e-25
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1529 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1588

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  DDL SP++RL VG  V  GTG  +L+ +I
Sbjct: 1589 MEHSSSPLQQMSFESSLQFLKSAAGFGRSDDLNSPSSRLMVGLPVRNGTGAFDLLTKI 1646

[134][TOP]
>UniRef100_B8N4P4 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8N4P4_ASPFN
          Length = 1673

 Score =  116 bits (291), Expect = 8e-25
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML  YGVEAARA+I+RE+  VF  + I VD RHL+LI D MT  GG+R  NR G
Sbjct: 1554 TNSIHHMLNLYGVEAARASIVREMTEVFEGHSISVDNRHLNLIGDVMTQSGGFRPFNRNG 1613

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ + SP  KMSFET   FL DA      D+LKSP++R+ VGRV  +GTG  +++  +
Sbjct: 1614 LVKDASSPLAKMSFETTVGFLRDAVQERDYDNLKSPSSRIVVGRVGTVGTGAFDVLAPV 1672

[135][TOP]
>UniRef100_B4QFV8 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
            RepID=B4QFV8_DROSI
          Length = 1642

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1524 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1583

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1584 MEHSSSPLQQMSFESSLQFLKSAAGFGRSDELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

[136][TOP]
>UniRef100_B4MRK4 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4MRK4_DROWI
          Length = 1649

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1531 SNDIHAIARTYGIEAAAQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1590

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1591 MEHSSSPLQQMSFESSLQFLRSAAGFGRPDELNSPSSRLMVGLPVRNGTGAFELLTKI 1648

[137][TOP]
>UniRef100_B4KP10 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4KP10_DROMO
          Length = 1649

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1531 SNDIHAIARTYGIEAATQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1590

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1591 MEHSSSPLQQMSFESSLQFLRSAAGFGRPDELNSPSSRLMVGLPVRNGTGAFELLTRI 1648

[138][TOP]
>UniRef100_B4HRE8 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4HRE8_DROSE
          Length = 1585

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1467 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1526

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1527 MEHSSSPLQQMSFESSLQFLKSAAGFGRSDELSSPSSRLMVGLPVRNGTGAFELLTKI 1584

[139][TOP]
>UniRef100_B3NR27 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NR27_DROER
          Length = 1642

 Score =  116 bits (290), Expect = 1e-24
 Identities = 59/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1524 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1583

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ ++
Sbjct: 1584 MEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKL 1641

[140][TOP]
>UniRef100_B3MEH6 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MEH6_DROAN
          Length = 1643

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1525 SNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 1584

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL  A   G  D+L SP++RL VG  V  GTG  EL+ +I
Sbjct: 1585 MEHSSSPLQQMSFESSLQFLRSAAGFGRQDELNSPSSRLMVGLPVRNGTGAFELLTKI 1642

[141][TOP]
>UniRef100_UPI0000DB7146 PREDICTED: similar to RNA polymerase I subunit CG10122-PA n=1
            Tax=Apis mellifera RepID=UPI0000DB7146
          Length = 1665

 Score =  115 bits (289), Expect = 1e-24
 Identities = 56/118 (47%), Positives = 85/118 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++++  TYG+EAA   I++EV+ VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 1538 SNDIYSISQTYGIEAANRVIIKEVRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKG 1597

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++ +FL +A L+G  D+L+SP++RL +G+  + GTG   L+ +I
Sbjct: 1598 MEESASPLQQMSFESSLNFLKNAALQGKRDNLESPSSRLMLGQPCKSGTGICSLLVKI 1655

[142][TOP]
>UniRef100_B4J683 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4J683_DROGR
          Length = 903

 Score =  114 bits (286), Expect = 3e-24
 Identities = 59/118 (50%), Positives = 80/118 (67%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I++EV +VF  YGI VD RHLSLIAD+MT  G ++  +R G
Sbjct: 785  SNDIHAIARTYGIEAAAQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKG 844

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +E S SP  +MSFE++  FL +A   G  D L SP++RL VG  V  GTG  EL+ ++
Sbjct: 845  MEHSSSPLQQMSFESSLQFLRNAAGFGRPDQLNSPSSRLMVGLPVRNGTGAFELLTKM 902

[143][TOP]
>UniRef100_B8C4Z8 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8C4Z8_THAPS
          Length = 1671

 Score =  114 bits (284), Expect = 5e-24
 Identities = 55/115 (47%), Positives = 76/115 (66%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+  +   YGVEAAR +I  +++ VF+ YGI VDPRHLSLIADFMT+ G Y+  NRIG
Sbjct: 1554 SNDIWGIRCAYGVEAARMSIADQIRGVFAVYGISVDPRHLSLIADFMTYDGEYKPMNRIG 1613

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            +    S FL+MSFE+ + F+ DA L    D + SP+A + +G  +  GTG  E +
Sbjct: 1614 MADISSTFLQMSFESTSVFMVDAALHKRNDPMMSPSANIVMGHPIRHGTGAFECI 1668

[144][TOP]
>UniRef100_B6AA07 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
            RepID=B6AA07_9CRYT
          Length = 1981

 Score =  113 bits (283), Expect = 7e-24
 Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+  +   YG+EAAR  ++ E+ +VF+ YGI VD RHLSLI D +T  G  R  +R+G
Sbjct: 1837 SNDIQTVYKYYGIEAARKCLINELTNVFAVYGINVDYRHLSLIGDTVTFSGSIRVFSRVG 1896

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
             +  S SPFL+MSFET+  FL DA  RG++D LKSPA+ + VG++  +GTG
Sbjct: 1897 NVAHSTSPFLQMSFETSIKFLADACSRGAIDSLKSPASSISVGKICSVGTG 1947

[145][TOP]
>UniRef100_A2QRS4 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
            RepID=A2QRS4_ASPNC
          Length = 1680

 Score =  113 bits (283), Expect = 7e-24
 Identities = 57/119 (47%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML  YGVEAARA+I++E+  VF  + I VD RHL+LI D MT  GG+R  NR G
Sbjct: 1561 TNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRPFNRNG 1620

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++   SP  KMSFET   +L +A +    D+LKSP+AR+ VGR   +GTG  +++  +
Sbjct: 1621 LVKDGSSPLAKMSFETTVGYLKEAVVERDFDNLKSPSARIVVGRTGTVGTGAFDVLAPV 1679

[146][TOP]
>UniRef100_Q4UI00 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4UI00_THEAN
          Length = 1999

 Score =  112 bits (281), Expect = 1e-23
 Identities = 58/117 (49%), Positives = 76/117 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            NDV  +   YG+EAAR+ I+ E+Q VFS YGI VD RHL+LIADFMT +G  R   R G+
Sbjct: 1864 NDVATVFKYYGIEAARSCIVSELQKVFSVYGIKVDYRHLTLIADFMTQKGDVRTFTRYGM 1923

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
                SP L+MSFE+   FL DA+ RG+ D+LKSPA  L  G+ V +G+    L+  +
Sbjct: 1924 ARHTSPLLQMSFESTMKFLMDASERGAYDNLKSPAGGLMTGKPVHVGSSLCRLMHVV 1980

[147][TOP]
>UniRef100_UPI000187F52A hypothetical protein MPER_15635 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187F52A
          Length = 108

 Score =  111 bits (278), Expect = 3e-23
 Identities = 54/103 (52%), Positives = 71/103 (68%)
 Frame = -2

Query: 471 ARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGIESSVSPFLKMSFET 292
           ARA I+RE+  VF AYGI VD RHL LIAD+MT +GGY+  NR GI ++ SP LK S+ET
Sbjct: 2   ARAAILREMSGVFGAYGIQVDRRHLELIADYMTFEGGYKPFNRKGISANPSPLLKASYET 61

Query: 291 AAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            A FL+DATL G  DDL +P+  + +GR    GTG  +++  +
Sbjct: 62  TAAFLSDATLHGDFDDLSTPSGNIVLGRPNHTGTGAFDVLMPL 104

[148][TOP]
>UniRef100_Q4N7L1 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N7L1_THEPA
          Length = 1996

 Score =  110 bits (276), Expect = 4e-23
 Identities = 57/117 (48%), Positives = 76/117 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            NDV  +L  YG+EAAR+ I+ E+Q VFS YGI V+ RHL+LIADFMT +G  R   R G+
Sbjct: 1861 NDVATVLKYYGIEAARSCIVSELQKVFSVYGIKVNYRHLTLIADFMTQKGDVRTFTRYGM 1920

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
                SP L+MSFE+   FL  A+ RG+ D+LKSPA  L  G+ V +G+    L+  +
Sbjct: 1921 AKHTSPLLQMSFESTMKFLMQASQRGAYDNLKSPAGGLMAGKPVHVGSSLCRLMHVV 1977

[149][TOP]
>UniRef100_UPI0000E46841 PREDICTED: similar to RNA polymerase I large subunit n=1
            Tax=Strongylocentrotus purpuratus RepID=UPI0000E46841
          Length = 1742

 Score =  110 bits (275), Expect = 6e-23
 Identities = 53/87 (60%), Positives = 69/87 (79%)
 Frame = -2

Query: 450  EVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGIESSVSPFLKMSFETAAHFLTD 271
            EV+ VFS YGI VDPRHLSL++D+MT +G YR  NRIG+ES+ SP  KM+FE+   FL +
Sbjct: 1656 EVRDVFSVYGITVDPRHLSLVSDYMTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLRE 1715

Query: 270  ATLRGSVDDLKSPAARLCVGRVVELGT 190
            AT++G+ D+L+SP+ARL VGRVV  GT
Sbjct: 1716 ATIQGAKDNLQSPSARLVVGRVVNGGT 1742

[150][TOP]
>UniRef100_C4Q0S7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4Q0S7_SCHMA
          Length = 1784

 Score =  109 bits (272), Expect = 1e-22
 Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN++  M  TYG+EAARA + REV  VF  YGI V+ RHLSLI+D++T  G Y A NR  
Sbjct: 1664 TNNITVMNETYGIEAARAALQREVSGVFGHYGIHVNSRHLSLISDYLTKFGVYHAFNRRS 1723

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVE-LGTGCVELVQQI 163
            + S  SP  +M+FET A+ L  +    S+D+L SP+A L  GR+V   GT C EL+Q++
Sbjct: 1724 MSSHPSPIQQMTFETVANVLKHSLQNDSMDNLVSPSASLVAGRIVHYAGTNCFELLQKL 1782

[151][TOP]
>UniRef100_A2FYC2 DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
           n=1 Tax=Trichomonas vaginalis G3 RepID=A2FYC2_TRIVA
          Length = 370

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/115 (46%), Positives = 76/115 (66%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +L  YG+EAAR  I++EV SVF  Y I VD RHLSLIADF+T+ G +   +R  
Sbjct: 252 TNDIAIILKHYGIEAARMAIIKEVNSVFKNYMIDVDMRHLSLIADFVTNSGDWLGMSRHT 311

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           ++   SP  +MSFET   FLT  T+ G  D ++SP+A L  G V+++G+G  E++
Sbjct: 312 MKKCASPLQQMSFETTTAFLTQCTMHGGKDMMESPSASLTAGNVIKMGSGLCEIL 366

[152][TOP]
>UniRef100_A2DXG9 DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
           n=1 Tax=Trichomonas vaginalis G3 RepID=A2DXG9_TRIVA
          Length = 257

 Score =  108 bits (269), Expect = 3e-22
 Identities = 54/115 (46%), Positives = 76/115 (66%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +L  YG+EAAR  I++EV SVF  Y I VD RHLSLIADF+T+ G +   +R  
Sbjct: 139 TNDIAIILKHYGIEAARMAIIKEVNSVFKNYMIDVDMRHLSLIADFVTNTGDWLGMSRHT 198

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           ++   SP  +MSFET   FLT  T+ G  D ++SP+A L  G V+++G+G  E++
Sbjct: 199 MKKCASPLQQMSFETTTAFLTQCTMHGGKDMMESPSASLTAGNVIKMGSGLCEIL 253

[153][TOP]
>UniRef100_UPI000186D8C3 DNA-directed RNA polymerase I largest subunit, putative n=1
            Tax=Pediculus humanus corporis RepID=UPI000186D8C3
          Length = 1659

 Score =  107 bits (268), Expect = 4e-22
 Identities = 52/115 (45%), Positives = 75/115 (65%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV+ ++ T G+EA    I++E+  VF  YGI VD RHL L+AD+MT+QG Y   NRIG
Sbjct: 1540 SNDVNKVVETLGIEAGVRIIVKELNDVFGVYGITVDHRHLLLVADYMTNQGNYSPFNRIG 1599

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            +  S SP  +MSFE +  FL  + +R   D + SP+AR+  GR  + GTGC +++
Sbjct: 1600 LADSSSPLQQMSFERSTGFLKKSLVRNQEDFMNSPSARIMAGRFCKSGTGCFDVM 1654

[154][TOP]
>UniRef100_Q4SFA8 DNA-directed RNA polymerase n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SFA8_TETNG
          Length = 1949

 Score =  107 bits (266), Expect = 6e-22
 Identities = 52/105 (49%), Positives = 73/105 (69%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N+VHAM   YG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 1558 SNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHA 1617

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVV 202
            I S+ SP  +M+FET+  F+  AT+ GS D L SP+A L VG+++
Sbjct: 1618 IRSNSSPLQQMTFETSYKFIKQATMLGSHDRLASPSASLVVGKLL 1662

[155][TOP]
>UniRef100_B6HAC6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6HAC6_PENCW
          Length = 1671

 Score =  106 bits (265), Expect = 8e-22
 Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +H ML  YGVEAAR TI+RE+ +VF  + I VD RHL+LI D MT  G ++A +R G
Sbjct: 1552 TNSIHDMLNLYGVEAARGTIVREMDAVFKGHSISVDNRHLNLIGDVMTQSGSFKAFSRNG 1611

Query: 336  -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             ++ + S F + SFET    L D  L    D+LKSP++R+ VGRV  +GTG  +++  +
Sbjct: 1612 LVKDASSAFARASFETTVGALKDVVLERGNDNLKSPSSRIVVGRVGTVGTGSFDILAPV 1670

[156][TOP]
>UniRef100_A8QBY2 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8QBY2_MALGO
          Length = 1673

 Score =  106 bits (264), Expect = 1e-21
 Identities = 54/110 (49%), Positives = 73/110 (66%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+ A+L  YGVEAARA I+ E++ +F  YGIGV  RH+ LIAD+ T  G +R  +R G
Sbjct: 1552 SNDIGALLYCYGVEAARAAIVSELKGIFDTYGIGVSMRHMFLIADYQTAFGDFRPFSRGG 1611

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
            +  + SP LK SFE    FL+ A+L   +DDL SP++ + VGR V  GTG
Sbjct: 1612 LADAPSPLLKASFEMTMAFLSGASLFQEMDDLTSPSSNIVVGRPVRSGTG 1661

[157][TOP]
>UniRef100_Q4YXG8 DNA-directed RNA polymerase n=1 Tax=Plasmodium berghei
            RepID=Q4YXG8_PLABE
          Length = 2577

 Score =  105 bits (262), Expect = 2e-21
 Identities = 51/119 (42%), Positives = 77/119 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++ ++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  ++ NR GI
Sbjct: 2457 NDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFNRYGI 2516

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
             +  + F KMSFE A  F+    ++ S+D L +P++ L  G+ +++GT    +V  I G
Sbjct: 2517 NAYRNVFHKMSFECATSFMIQGCIQNSIDYLSTPSSSLFFGKHIKVGTNVSNIVTCIKG 2575

[158][TOP]
>UniRef100_A0DJB3 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia
            RepID=A0DJB3_PARTE
          Length = 1696

 Score =  105 bits (262), Expect = 2e-21
 Identities = 51/116 (43%), Positives = 80/116 (68%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND+ A++  +G+EAAR  I++E+ +VF AYG+ VD RHL LIAD+MT  G  RA NRI +
Sbjct: 1576 NDIVAIMNAFGIEAARNAIIKEILAVFGAYGVAVDYRHLYLIADYMTFGGQIRAMNRIYM 1635

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            + + +PF KM+FET+  FLT+A L    D   + +++L +GRV ++G+   +++ Q
Sbjct: 1636 DFNTAPFGKMTFETSTQFLTNACLNRETDTFNNLSSQLVIGRVPKVGSNLCDVLYQ 1691

[159][TOP]
>UniRef100_Q7RJK4 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
            RepID=Q7RJK4_PLAYO
          Length = 2594

 Score =  103 bits (258), Expect = 5e-21
 Identities = 50/117 (42%), Positives = 76/117 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++ ++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  ++ NR G+
Sbjct: 2474 NDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFNRYGM 2533

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
             +  + F KMSFE A  F+    ++ SVD L +P++ L  G+ +++GT    +V  I
Sbjct: 2534 AACRNVFHKMSFECATTFMIQGCIQNSVDYLSTPSSSLFFGKHIKVGTNVSNIVTSI 2590

[160][TOP]
>UniRef100_B3L6H5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
            RepID=B3L6H5_PLAKH
          Length = 2592

 Score =  103 bits (258), Expect = 5e-21
 Identities = 51/119 (42%), Positives = 77/119 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++ ++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  ++ +R G+
Sbjct: 2472 NDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFSRHGL 2531

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
                + F KMSFE A +FLT   +  SVD L + ++ L  G+ +++GT   ++V  I G
Sbjct: 2532 GCFRNVFHKMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNVADIVTHIEG 2590

[161][TOP]
>UniRef100_A5KB21 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
            RepID=A5KB21_PLAVI
          Length = 2695

 Score =  103 bits (258), Expect = 5e-21
 Identities = 51/119 (42%), Positives = 77/119 (64%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++ ++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  ++ +R G+
Sbjct: 2575 NDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFSRHGL 2634

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIGG 157
                + F KMSFE A +FLT   +  SVD L + ++ L  G+ +++GT   ++V  I G
Sbjct: 2635 GCFRNVFHKMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNVADIVTHIEG 2693

[162][TOP]
>UniRef100_Q8I410 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
            RepID=Q8I410_PLAF7
          Length = 2914

 Score =  102 bits (255), Expect = 1e-20
 Identities = 50/114 (43%), Positives = 75/114 (65%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++A++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  +A NR G+
Sbjct: 2793 NDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDLKAFNRHGL 2852

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
                + F KMSFE A +FL    +  S+D L + ++ L  G+ +++GT   ++V
Sbjct: 2853 GYFRNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNLADIV 2906

[163][TOP]
>UniRef100_Q26008 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum
            RepID=Q26008_PLAFA
          Length = 2910

 Score =  102 bits (255), Expect = 1e-20
 Identities = 50/114 (43%), Positives = 75/114 (65%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            ND++A++ TYG+EA R  I +E++ VF AYGI +D RHLS I+DFMTH G  +A NR G+
Sbjct: 2792 NDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDLKAFNRHGL 2851

Query: 333  ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
                + F KMSFE A +FL    +  S+D L + ++ L  G+ +++GT   ++V
Sbjct: 2852 GYFRNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNLADIV 2905

[164][TOP]
>UniRef100_UPI0000220D7C Hypothetical protein CBG20734 n=1 Tax=Caenorhabditis briggsae AF16
            RepID=UPI0000220D7C
          Length = 1723

 Score =  100 bits (250), Expect = 5e-20
 Identities = 52/115 (45%), Positives = 73/115 (63%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ +L  YGVEA    I  E+ +VF+ YGI V  RHLSL AD+MT  G  +  NR  
Sbjct: 1584 SNDLNLILENYGVEACAKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGA 1643

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            + SS SP  KM+FET   FL +A L+G  D++ SP+AR+ +G +   GTG  +L+
Sbjct: 1644 MSSSSSPLQKMTFETTMAFLREALLQGEEDNVNSPSARIVMGALPRGGTGSFDLI 1698

[165][TOP]
>UniRef100_A8XYH3 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
            RepID=A8XYH3_CAEBR
          Length = 1764

 Score =  100 bits (250), Expect = 5e-20
 Identities = 52/115 (45%), Positives = 73/115 (63%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ +L  YGVEA    I  E+ +VF+ YGI V  RHLSL AD+MT  G  +  NR  
Sbjct: 1625 SNDLNLILENYGVEACAKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGA 1684

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            + SS SP  KM+FET   FL +A L+G  D++ SP+AR+ +G +   GTG  +L+
Sbjct: 1685 MSSSSSPLQKMTFETTMAFLREALLQGEEDNVNSPSARIVMGALPRGGTGSFDLI 1739

[166][TOP]
>UniRef100_O17628 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
            RepID=O17628_CAEEL
          Length = 1737

 Score =  100 bits (249), Expect = 6e-20
 Identities = 53/115 (46%), Positives = 72/115 (62%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ +L  YGVEA    I  E+ +VF+ YGI V  RHLSL AD+MT  G  +  NR  
Sbjct: 1597 SNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGA 1656

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            + SS SP  KM+FET   FL +A L G  D++ SP+ARL +G +   GTG  +L+
Sbjct: 1657 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLL 1711

[167][TOP]
>UniRef100_B7Z284 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z284_HUMAN
          Length = 1207

 Score =  100 bits (249), Expect = 6e-20
 Identities = 46/87 (52%), Positives = 63/87 (72%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+HA+  TYG+EAA   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR G
Sbjct: 1107 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1166

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRG 256
            I S+ SP  +M+FET+  FL  AT+ G
Sbjct: 1167 IRSNSSPLQQMTFETSFQFLKQATMLG 1193

[168][TOP]
>UniRef100_Q8SS15 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
            RepID=Q8SS15_ENCCU
          Length = 1395

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ + +T GVEAAR  I+ EV  VF  YGI +D RHL LIAD+MT +G Y   +R G
Sbjct: 1272 SNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRHG 1331

Query: 336  IESSVSPFLKMSFETA-AHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            + +  SP  ++SFE+  ++F T AT     D L +P+A L VG  V  GTGC +L+  I
Sbjct: 1332 LGADDSPIQRISFESCYSNFKTAATFH-LEDKLSNPSASLTVGNPVRCGTGCFDLIHNI 1389

[169][TOP]
>UniRef100_C6LRR9 DNA-directed RNA polymerase n=1 Tax=Giardia intestinalis ATCC 50581
            RepID=C6LRR9_GIALA
          Length = 2144

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 49/118 (41%), Positives = 69/118 (58%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN+++ +   YG+EAAR++I+ E+  VFS Y I VD RHLSLIAD MT  G  R  NR+ 
Sbjct: 2027 TNNINQIFEIYGIEAARSSIIEEIHRVFSTYHIEVDERHLSLIADSMTLSGCVRGLNRLE 2086

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +       LK SFE+A   +    L    D L++PA  + VG+    GTG  +L+ Q+
Sbjct: 2087 MRHQTEEILKASFESACTSIAAGALTSGFDSLRAPAGAVTVGQYPFQGTGSFDLLSQL 2144

[170][TOP]
>UniRef100_A8B7R7 DNA-directed RNA polymerase n=1 Tax=Giardia lamblia ATCC 50803
            RepID=A8B7R7_GIALA
          Length = 2142

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 50/118 (42%), Positives = 66/118 (55%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN++  +   YG+EAAR  I+ E+  VFS Y I VD RHLSLIAD MT  G  R  NR+ 
Sbjct: 2025 TNNISQIFEIYGIEAARNAIIEEIHRVFSTYHIEVDERHLSLIADSMTLSGCVRGLNRLE 2084

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +       LK SFE+A   L    L    D L++PA  + VG+    GTG  +L+ Q+
Sbjct: 2085 MRHQTEELLKASFESACTSLAAGALTSGFDSLRAPAGAVTVGQYPSQGTGSFDLLTQL 2142

[171][TOP]
>UniRef100_Q2GP10 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2GP10_CHAGB
          Length = 1475

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 42/74 (56%), Positives = 56/74 (75%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TND+  +L  YGVEA R+ I+ E+  VF+ +GI VDPRHL+LIAD+MT  GG+ A NRI
Sbjct: 1388 STNDIAQVLEVYGVEACRSNIVAELSGVFAGHGIAVDPRHLNLIADYMTRNGGFSAFNRI 1447

Query: 339  GIESSVSPFLKMSF 298
            G+  +VSPF KMS+
Sbjct: 1448 GLTGNVSPFTKMSY 1461

[172][TOP]
>UniRef100_UPI00017B50E6 UPI00017B50E6 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B50E6
          Length = 192

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/87 (49%), Positives = 60/87 (68%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +N+VHAM   YG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 103 SNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHA 162

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRG 256
           I S+ SP  +M+FET+  F+  AT+ G
Sbjct: 163 IRSNSSPLQQMTFETSYKFIKQATMLG 189

[173][TOP]
>UniRef100_Q4TEZ8 Chromosome undetermined SCAF4966, whole genome shotgun sequence.
           (Fragment) n=1 Tax=Tetraodon nigroviridis
           RepID=Q4TEZ8_TETNG
          Length = 163

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/87 (49%), Positives = 60/87 (68%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +N+VHAM   YG+E A   I +E++ VF+ YGI VDPRHLSL+AD+M  +G Y+  NR  
Sbjct: 76  SNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHA 135

Query: 336 IESSVSPFLKMSFETAAHFLTDATLRG 256
           I S+ SP  +M+FET+  F+  AT+ G
Sbjct: 136 IRSNSSPLQQMTFETSYKFIKQATMLG 162

[174][TOP]
>UniRef100_A8Q5K0 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8Q5K0_BRUMA
          Length = 1687

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 45/115 (39%), Positives = 72/115 (62%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND++ M   YG+EA    +++E+  VF+ YGI V+ RHL+L AD+MT  G  +  +R  
Sbjct: 1560 SNDLNMMCNNYGIEACGRALVKEIIRVFTPYGIDVNWRHLTLAADYMTFTGRIQPFSRGA 1619

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            +  S SP  +M+FET   F+ DA + G  D L SP++RL +G ++  GTG  +++
Sbjct: 1620 MSLSASPLQRMTFETTIAFMRDALINGDDDHLMSPSSRLVIGGLLRGGTGIFDVM 1674

[175][TOP]
>UniRef100_A9BKN5 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKN5_9CRYP
          Length = 1496

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 42/117 (35%), Positives = 76/117 (64%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TND++A++  YG+EAAR T++RE+ ++F    I ++  HL LI+D++T  G +R  +R G
Sbjct: 1380 TNDIYALMNRYGIEAARETLVRELNTIFQIQSILINYHHLDLISDYITRLGNFRPFSRKG 1439

Query: 336  IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            I    SP  K+++ETA  FL + +L   +D L S +  + +G++ ++GTG  +++ +
Sbjct: 1440 I-CEESPLQKITYETALEFLINFSLNKQIDFLDSASGSISLGKICKMGTGTFDIISR 1495

[176][TOP]
>UniRef100_B7XHV6 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
            RepID=B7XHV6_ENTBH
          Length = 1270

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 46/119 (38%), Positives = 69/119 (57%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND++A+ +  G+EA R TI+ E+++VF  YGI +   HL LIAD+M H G Y+  NR 
Sbjct: 1150 TSNDIYAIFLHLGIEACRITIINEIKAVFDIYGIIISEEHLELIADYMCHNGTYQPFNRY 1209

Query: 339  GIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
                + S   KMSFE+    + +A      D +  P+A + VG  ++ GTG  EL+  I
Sbjct: 1210 TFNMNDSIIQKMSFESCFKNIKEAVTFQLKDKISVPSANITVGNKIQNGTGLFELLYNI 1268

[177][TOP]
>UniRef100_Q976A6 DNA-directed RNA polymerase subunit A'' n=1 Tax=Sulfolobus tokodaii
           RepID=RPOA2_SULTO
          Length = 392

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++H +  T+G+EAAR  I RE++ V    G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 271 TNNIHEIADTFGIEAAREAIAREIKKVLEEQGLDVDMRHILLVADIMTRTGVVRQIGRHG 330

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           +    S  L + +FE     L DA  RG +++ K     + +G+ + LGTG VEL  ++
Sbjct: 331 VTGEKSSVLARAAFEVTVKHLLDAAARGEMEEFKGVVENIIIGQPIRLGTGIVELTMRL 389

[178][TOP]
>UniRef100_UPI00003C8496 DNA-directed RNA polymerase subunit A'''''''' n=1 Tax=Ferroplasma
           acidarmanus fer1 RepID=UPI00003C8496
          Length = 504

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+  +   +G+EAAR  I RE ++  S  G+ VD RHL L+AD MT  G  RA  R 
Sbjct: 382 TTNDIIEIENVFGIEAARNAIYREAENTLSEQGLNVDKRHLMLVADMMTFSGAVRAVGRQ 441

Query: 339 GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           GI    S  L + +FE  +  L  A L G +D L   A  + VG+ + LGTG ++LV
Sbjct: 442 GISGRKSSVLARAAFEITSKHLLKAGLLGEIDPLAGVAENIIVGQPITLGTGAIDLV 498

[179][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+NDV+ +L   G+EA R  +MRE++ V    G  V+ RHL+++ D MTH+GG  A  R 
Sbjct: 1313 TSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRR 1372

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI  S   P ++ SFE     L +A      D LK  +A + VG++  +GTGC  L
Sbjct: 1373 GINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGL 1428

[180][TOP]
>UniRef100_Q3SE61 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia
            RepID=Q3SE61_PARTE
          Length = 1751

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            TT+DV+ +    G+EAARA ++ E + +F+ YGI ++ RHL L+ D+MTH+G   A NR 
Sbjct: 1413 TTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYINYRHLYLLYDWMTHRGRLTAVNRN 1472

Query: 339  GIE--SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            GI     VS   K SFE     L DA +   +D ++  +  +  G++   GTGC EL+
Sbjct: 1473 GINRIPEVSVLRKSSFEETVEILYDAAVFSEIDHMRGLSENIIFGQLCPHGTGCFELM 1530

[181][TOP]
>UniRef100_A0BYP5 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia
            RepID=A0BYP5_PARTE
          Length = 1750

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            TT+DV+ +    G+EAARA ++ E + +F+ YGI ++ RHL L+ D+MTH+G   A NR 
Sbjct: 1413 TTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYINYRHLYLLYDWMTHRGRLTAVNRN 1472

Query: 339  GIE--SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            GI     VS   K SFE     L DA +   +D ++  +  +  G++   GTGC EL+
Sbjct: 1473 GINRIPEVSVLRKSSFEETVEILYDAAVFSEIDHMRGLSENIIFGQLCPHGTGCFELM 1530

[182][TOP]
>UniRef100_O28390 DNA-directed RNA polymerase subunit A'' n=1 Tax=Archaeoglobus
           fulgidus RepID=RPOA2_ARCFU
          Length = 380

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTN+++ +    G+EAAR  I+RE        G+ VD RH+ L+AD MT  G  R   R 
Sbjct: 257 TTNNIYEIYEVLGIEAARNAIIREALDTLEEQGLEVDVRHIMLVADVMTADGELRQIGRH 316

Query: 339 GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
           G+       L + +FE   + L DA +RG  D L+     + VG+ ++LGTG VELV ++
Sbjct: 317 GVAGEKQSILARAAFEMTVNNLLDAAVRGEEDHLRGITENIIVGQPIKLGTGDVELVLKM 376

Query: 162 GG 157
           GG
Sbjct: 377 GG 378

[183][TOP]
>UniRef100_UPI0000E46840 PREDICTED: similar to RNA polymerase I large subunit n=1
           Tax=Strongylocentrotus purpuratus RepID=UPI0000E46840
          Length = 73

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 40/72 (55%), Positives = 55/72 (76%)
 Frame = -2

Query: 378 MTHQGGYRACNRIGIESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVE 199
           MT +G YR  NRIG+ES+ SP  KM+FE+   FL +AT++G+ D+L+SP+ARL VGRVV 
Sbjct: 1   MTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLREATIQGAKDNLQSPSARLVVGRVVN 60

Query: 198 LGTGCVELVQQI 163
            GTGC +L+Q +
Sbjct: 61  GGTGCFDLIQPL 72

[184][TOP]
>UniRef100_A5ULN5 DNA-dependent RNA polymerase, subunit A, RpoA n=1
           Tax=Methanobrevibacter smithii ATCC 35061
           RepID=A5ULN5_METS3
          Length = 403

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+H +    G+EAAR +I+ E ++     G+ VD RH+ L+AD MT +G  ++  R 
Sbjct: 281 TTNDIHEIETVLGIEAARQSIINEARNTLENQGLSVDVRHIMLVADIMTSEGEVKSIGRH 340

Query: 339 GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCV 181
           GI    S  L + +FE     L  A++RG VDDL      + +G+ + LGTG +
Sbjct: 341 GISGEKSSVLARAAFEETGKHLLRASIRGEVDDLTGIIENIIIGQPIPLGTGSI 394

[185][TOP]
>UniRef100_B9AEP5 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii
           DSM 2375 RepID=B9AEP5_METSM
          Length = 403

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+H +    G+EAAR +I+ E ++     G+ VD RH+ L+AD MT +G  ++  R 
Sbjct: 281 TTNDIHEIETVLGIEAARQSIINEARNTLENQGLSVDVRHIMLVADIMTSEGEVKSIGRH 340

Query: 339 GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCV 181
           GI    S  L + +FE     L  A++RG VDDL      + +G+ + LGTG +
Sbjct: 341 GISGEKSSVLARAAFEETGKHLLRASIRGEVDDLTGIIENIIIGQPIPLGTGSI 394

[186][TOP]
>UniRef100_UPI0001A48A43 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT n=1 Tax=Sulfolobus
           shibatae RepID=UPI0001A48A43
          Length = 395

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +   +G+EAAR  I+RE+  V +  G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 274 TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHG 333

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +    +  L + +FE     L DA  RG V++ K     + +G  ++LGTG VEL  +
Sbjct: 334 VTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 391

[187][TOP]
>UniRef100_UPI0000164E43 DNA-directed RNA polymerase subunit A'''''''' n=1 Tax=Thermoplasma
           volcanium GSS1 RepID=UPI0000164E43
          Length = 513

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +    G+EAAR  I+ E Q      G+ VD RHL L+AD MT  G  RA  R G
Sbjct: 389 TNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTG 448

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I    S  L + +FE     L  A + G VD L   A  + VG+ + LGTG V+++
Sbjct: 449 ISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAVDII 504

[188][TOP]
>UniRef100_Q5FC19 Protein Y48E1A.1b, confirmed by transcript evidence n=1
           Tax=Caenorhabditis elegans RepID=Q5FC19_CAEEL
          Length = 120

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 44/93 (47%), Positives = 59/93 (63%)
 Frame = -2

Query: 450 EVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGIESSVSPFLKMSFETAAHFLTD 271
           E+ +VF+ YGI V  RHLSL AD+MT  G  +  NR  + SS SP  KM+FET   FL +
Sbjct: 2   EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLRE 61

Query: 270 ATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           A L G  D++ SP+ARL +G +   GTG  +L+
Sbjct: 62  ALLHGEEDNVNSPSARLVMGALPRGGTGSFDLL 94

[189][TOP]
>UniRef100_B8YB54 RNA polymerase subunit 1C n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB54_SULSH
          Length = 395

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +   +G+EAAR  I+RE+  V +  G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 274 TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHG 333

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +    +  L + +FE     L DA  RG V++ K     + +G  ++LGTG VEL  +
Sbjct: 334 VTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 391

[190][TOP]
>UniRef100_Q979F5 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermoplasma
           volcanium RepID=RPOA2_THEVO
          Length = 508

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +    G+EAAR  I+ E Q      G+ VD RHL L+AD MT  G  RA  R G
Sbjct: 384 TNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTG 443

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I    S  L + +FE     L  A + G VD L   A  + VG+ + LGTG V+++
Sbjct: 444 ISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAVDII 499

[191][TOP]
>UniRef100_C3MZM9 DNA-directed RNA polymerase subunit A'' n=6 Tax=Sulfolobus
           islandicus RepID=RPOA2_SULIA
          Length = 392

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +   +G+EAAR  I+RE+  V +  G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 271 TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHG 330

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +    +  L + +FE     L DA  RG V++ K     + +G  ++LGTG VEL  +
Sbjct: 331 VTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 388

[192][TOP]
>UniRef100_P58192 DNA-directed RNA polymerase subunit A'' n=2 Tax=Sulfolobus
           solfataricus RepID=RPOA2_SULSO
          Length = 392

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +   +G+EAAR  I+RE+  V +  G+ VD RH+ LIAD MT  G  R   R G
Sbjct: 271 TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHG 330

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +    +  L + +FE     L DA  RG V++ K     + +G  ++LGTG VEL  +
Sbjct: 331 VTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 388

[193][TOP]
>UniRef100_A4YCR0 DNA-directed RNA polymerase subunit A'' n=1 Tax=Metallosphaera
           sedula DSM 5348 RepID=RPOA2_METS5
          Length = 392

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++H +    GVEAAR  I RE++ V    G+ VD RH+ L++D MT  G  R   R G
Sbjct: 271 TNNLHEVESVLGVEAARELITREIKRVLEEQGLDVDIRHIELVSDIMTRTGEVRQIGRHG 330

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +     S   + +FE     L DA  RG +++ K     + +G+ ++LGTG VEL+ +
Sbjct: 331 VTGEKTSVLARAAFEVTVKHLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMVELLMR 388

[194][TOP]
>UniRef100_A2BN35 DNA-directed RNA polymerase subunit A'' n=1 Tax=Hyperthermus
           butylicus DSM 5456 RepID=A2BN35_HYPBU
          Length = 424

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN +H +    G+EAAR  ++RE++ V    G+ VD RHL L+AD MT  G  R   R G
Sbjct: 288 TNSIHEIEEVLGIEAARTMLIREMKDVLDEQGLDVDIRHLMLVADIMTMTGRVRQIGRHG 347

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
           +     SPF + +FE     L  A + G VD L   A  + VG V+ +GTG VE+
Sbjct: 348 VSGEKPSPFARAAFEMTTQNLYAAAVEGEVDRLLGVAETVIVGGVIRVGTGMVEV 402

[195][TOP]
>UniRef100_Q8TXI9 DNA-directed RNA polymerase largest subunit, the N-terminal part
           n=1 Tax=Methanopyrus kandleri RepID=Q8TXI9_METKA
          Length = 429

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND   + V  GVEA R  I+ +++ V+ + GI VDPRH  LI+D M+  G  R+   +G
Sbjct: 296 TNDPKIVDVLLGVEAGRNAIIEQLEEVYESQGISVDPRHFMLISDMMSFWGELRSVRSVG 355

Query: 336 ----IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
               +E   SP  K +FE  +  LT+    G V++L+     + VG+ V +GTG VEL
Sbjct: 356 GYSVMELKGSPLTKAAFEYVSRVLTETATSGDVEELRGVLENIIVGKPVPVGTGTVEL 413

[196][TOP]
>UniRef100_P11514 DNA-directed RNA polymerase subunit A'' n=1 Tax=Sulfolobus
           acidocaldarius RepID=RPOA2_SULAC
          Length = 393

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++H +    G+EAAR  I RE++ V    G+ VD RH+ L++D MT  G  R   R G
Sbjct: 272 TNNIHEVEEVLGIEAARELISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHG 331

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           +    S  L + +FE     L DA  RG  ++ K     + +G+ + LGTG VEL  +
Sbjct: 332 VTGEKSSVLARAAFEVTVKHLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVELTMK 389

[197][TOP]
>UniRef100_A8MAA3 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Caldivirga
           maquilingensis IC-167 RepID=A8MAA3_CALMQ
          Length = 388

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           ++D+H +    G+EAAR  IMRE+++V    G+ VD RHL ++AD MT  G  R   R G
Sbjct: 269 SHDIHEVAEVLGIEAARTMIMRELKAVLDDQGLDVDTRHLMMVADVMTWDGKVRQIGRHG 328

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           +    VSP  + +FE     L +A   G  +  K     +  GR V +GTG VEL+
Sbjct: 329 VAGQKVSPLARAAFEVTVKNLIEAAYMGESEKFKGVVENIISGRYVPIGTGYVELM 384

[198][TOP]
>UniRef100_O27126 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOA2_METTH
          Length = 451

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+H +    G+EAAR  I+ E +      G+ VD RH+ L+AD MT  G  ++  R 
Sbjct: 330 TTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIGRH 389

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           GI     S   + SFE     L  A++RG VD L      + +G+ + LGTG V +V +
Sbjct: 390 GISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVSVVMK 448

[199][TOP]
>UniRef100_Q6L2G0 DNA-directed RNA polymerase subunit A'''' n=1 Tax=Picrophilus
           torridus RepID=Q6L2G0_PICTO
          Length = 508

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +    G+EAAR  I  E +   S  G+ VD RHL L+AD MT  G  RA  R G
Sbjct: 383 TNDIIEIEQVLGIEAARNAIYLEAERTLSEQGLNVDKRHLMLVADMMTFSGNVRAVGRQG 442

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I    S  L + +FE  +  L  A L G VD L   A  + VG+ + LGTG + LV
Sbjct: 443 ISGRKSSVLARAAFEITSKHLLKAGLLGEVDQLAGVAENIIVGQPITLGTGAINLV 498

[200][TOP]
>UniRef100_Q12WS7 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanococcoides
           burtonii DSM 6242 RepID=Q12WS7_METBU
          Length = 386

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           +TN++  +   +G+EAAR  I++E        G+ VD RHL L++D MT  G  +   R 
Sbjct: 262 STNNIGEIYEVFGIEAARFAIIKEASDTLREQGLTVDIRHLMLVSDIMTCDGEVKQIGRH 321

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           GI     S F + +FE   + L DA +RG +D+L      + VG+ ++LGTG V LV
Sbjct: 322 GISGEKASVFARAAFEVTVNHLLDAGMRGDIDELNGVTENIIVGQPIKLGTGDVHLV 378

[201][TOP]
>UniRef100_P09847 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Winter RepID=RPOA2_METTW
          Length = 449

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+H +    G+EAAR  I+ E +      G+ VD RH+ L+AD MT  G  ++  R 
Sbjct: 330 TTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIGRH 389

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           GI     S   + SFE     L  A++RG VD L      + +G+ + LGTG V ++ +
Sbjct: 390 GISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVSVIMK 448

[202][TOP]
>UniRef100_Q74MX8 NEQ427 n=1 Tax=Nanoarchaeum equitans RepID=Q74MX8_NANEQ
          Length = 374

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTND+H +    G++AAR  I+ E+Q V    G+ +D R+L LIAD MT+ G      R 
Sbjct: 243 TTNDIHEIAKVLGIDAAREAIIEEIQKVLEEQGLEIDVRYLLLIADVMTYYGEVLGFTRH 302

Query: 339 GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           G+ E   SP  + +FE     L DA L G  DDL++    + + +   +GTG ++LV
Sbjct: 303 GLMERKPSPLERATFEVPFKNLADAALLGEKDDLRAVIVNVLINQPAPMGTGRIKLV 359

[203][TOP]
>UniRef100_A0B559 DNA-directed RNA polymerase, subunit A' n=1 Tax=Methanosaeta
           thermophila PT RepID=A0B559_METTP
          Length = 384

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN+++ +    G+EAAR  I+ E        G+ VD RH+ L+AD MT  G  +   R G
Sbjct: 260 TNNINEICEVLGIEAARNAIINEATETLREQGLQVDVRHIMLVADIMTCDGDVKQIGRHG 319

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           +     S   + +FE   + + DA +RG VDDL+     + VG+ + LGTG V+LV
Sbjct: 320 VSGEKASVLARAAFEVTVNHILDAAIRGDVDDLRGVTENVIVGQPIRLGTGDVQLV 375

[204][TOP]
>UniRef100_C8SAT4 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8SAT4_FERPL
          Length = 376

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN+++ +    G+EAAR  ++ E  +     G+ VD RH+ L+AD MT  G  +   R G
Sbjct: 254 TNNIYEIYEVLGIEAARNAVINEALATLEEQGLEVDVRHIMLVADAMTADGELKQIGRHG 313

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQIG 160
           +       L + +FE   + L +A++RG VD L      + VG+ ++LGTG VELV ++G
Sbjct: 314 VAGEKQSILARAAFEMTVNNLLEASVRGEVDRLNGITENIIVGQPIKLGTGDVELVLKLG 373

Query: 159 G 157
           G
Sbjct: 374 G 374

[205][TOP]
>UniRef100_B1YC26 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Thermoproteus
           neutrophilus V24Sta RepID=B1YC26_THENV
          Length = 379

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+H +    G+EAARA + +E++ V    G+ VD RH+ L+AD MT  G  +   R G
Sbjct: 261 SNDLHEVEEVLGIEAARALVAQEIKRVLEEQGLDVDIRHMYLVADTMTWSGRLKPIGRHG 320

Query: 336 -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            + +  SP  + +FE     L +A++RG  +  K     +  GR V +GTG V L+ Q
Sbjct: 321 VVGAKESPLARAAFEVTVKTLVEASVRGEEEQFKGVVENIVAGRYVPVGTGIVRLLMQ 378

[206][TOP]
>UniRef100_P15353 DNA-directed RNA polymerase subunit A'' n=1 Tax=Halococcus morrhuae
           RepID=RPOA2_HALMO
          Length = 393

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIG-VDPRHLSLIADFMTHQGGYRACNR 343
           T N++H +    GVEAAR TI+ E  +     G+G V+ RHL L+AD MT +G   +  R
Sbjct: 263 TCNNIHEVYRNLGVEAARETIIDETMNTLEEQGLGDVNIRHLMLVADIMTAEGTIESIGR 322

Query: 342 IGIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            GI  + +  L + +FE   + L DA + G VDDL      + VG+ ++LGTG V L  +
Sbjct: 323 HGISGNKNSVLARAAFEVTVNHLLDAAVHGEVDDLDGVTENVIVGKPIKLGTGDVNL--R 380

Query: 165 IGG 157
           +GG
Sbjct: 381 MGG 383

[207][TOP]
>UniRef100_A1RWW4 DNA-directed RNA polymerase, subunit A' n=1 Tax=Thermofilum pendens
           Hrk 5 RepID=A1RWW4_THEPD
          Length = 403

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTN++  +    G+EAARA I++E++ V   +G+ VD RH+ ++AD MT+ G  R   R 
Sbjct: 272 TTNNILEIYEVLGIEAARAAIIKEIKKVLDEHGLDVDWRHIMMVADAMTYSGKVRQVGRH 331

Query: 339 GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVG-RVVELGTGCVEL 175
           G+       L + SFE     L +A LRG +D+L+     + +G + + LGTG V+L
Sbjct: 332 GVAGEKGSVLARASFEVTVKNLVEAALRGELDELRGVIENVIIGSKPIPLGTGSVKL 388

[208][TOP]
>UniRef100_P14247 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanococcus
           vannielii SB RepID=RPOA2_METVS
          Length = 386

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTN++  +    GVEAAR  I+RE+ +     G+ VD RHL ++AD MT  G  +   R 
Sbjct: 259 TTNNIVEIQDVLGVEAARNAIIREMDATLGNQGLTVDKRHLMMVADLMTTDGVVKPIGRH 318

Query: 339 GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
           GI     S   + +FE     L  A++RG VDDL      + VG+ + +GTGC+ +
Sbjct: 319 GIGGEKASVLARAAFEETVKHLYSASMRGYVDDLSGVVENIIVGKPISMGTGCINV 374

[209][TOP]
>UniRef100_Q8PUR2 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanosarcina
           mazei RepID=RPOA2_METMA
          Length = 408

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           +TN+++ +    G+EAAR  I++E        G+ VD RH+ L+AD MT  G  +   R 
Sbjct: 267 STNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDGEVKQIGRH 326

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           GI     S F + +FE   + L DA +RG VD L+     + VG+ + +GTG V L+ +
Sbjct: 327 GISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTGDVHLISR 385

[210][TOP]
>UniRef100_Q8TRB8 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanosarcina
           acetivorans RepID=RPOA2_METAC
          Length = 397

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           +TN+++ +    G+EAAR  I++E        G+ VD RH+ L+AD MT  G  +   R 
Sbjct: 264 STNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTCDGEVKQIGRH 323

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
           GI     S F + +FE   + L DA +RG VD L+     + VG+ + +GTG V L+ +
Sbjct: 324 GISGEKASVFARAAFEVTVNHLLDAGMRGDVDQLQGVTENIIVGQPIRMGTGDVHLISR 382

[211][TOP]
>UniRef100_A5ATH2 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5ATH2_VITVI
          Length = 814

 Score = 80.1 bits (196), Expect = 8e-14
 Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI- 340
           +N+VHAML TYGVEA RAT ++EV ++ +AYG+  +  H S I DFM H  GY+  NR  
Sbjct: 641 SNNVHAMLNTYGVEATRATXIKEVFNISNAYGVKDNIHHXSEIVDFMIHSDGYQPMNRHG 700

Query: 339 GIESSVSPFLKMSFETAAHFL 277
           GI  SVS F KM+FE A+ F+
Sbjct: 701 GITESVSLFNKMTFEIASKFI 721

[212][TOP]
>UniRef100_Q03586 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermoplasma
           acidophilum RepID=RPOA2_THEAC
          Length = 508

 Score = 80.1 bits (196), Expect = 8e-14
 Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TND+  +    G+EAAR  I+ E        G+ VD RHL L+AD MT  G  RA  R G
Sbjct: 384 TNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTG 443

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I    S  L + +FE     L  A + G VD L   A  + VG+ + LGTG V+++
Sbjct: 444 ISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAVDII 499

[213][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV  M VT G+E  RA ++ E++ V S  G  V+ RHL+++AD MT +G   +  R G
Sbjct: 1355 SNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHIMSITRHG 1414

Query: 336  IES-SVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTG 187
            I        ++ SFE  A  L +A + G VDD+K  A  + +G++  +GTG
Sbjct: 1415 INRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTG 1465

[214][TOP]
>UniRef100_Q0W8G8 DNA-directed RNA polymerase, subunit A2 n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W8G8_UNCMA
          Length = 384

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN+++ +    G+EAAR  I++E     S  G+ VD RH+ L+AD MT  G  +   R G
Sbjct: 261 TNNINEIAEVLGIEAARNAIIKETLDTLSEQGLTVDIRHIMLVADMMTIDGEVKQIGRHG 320

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I    +  L + +FE   + L DA + G VD+L      + VG+ ++LGTG VEL+
Sbjct: 321 ISGEKASVLSRAAFEVTVNHLLDAAVAGEVDELTGVTENVIVGQPIQLGTGDVELL 376

[215][TOP]
>UniRef100_C7DHC3 RNA polymerase Rpb1 domain 5 n=1 Tax=Candidatus Micrarchaeum
           acidiphilum ARMAN-2 RepID=C7DHC3_9EURY
          Length = 347

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +N++  +   YGVEAAR  I  E++S     G  V  RH+SL+AD MT+ G  R+  R G
Sbjct: 219 SNNLFDVFKVYGVEAARNMIANELKSTIENEGFTVSFRHVSLLADTMTYNGAIRSAGRHG 278

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           I     S F + ++E       +A++ G VD+LK  A  + +G+ +++GTG V+LV
Sbjct: 279 IAGEKASVFARAAYEETVKHFVNASIFGEVDELKGVAENILIGKQIKVGTGRVKLV 334

[216][TOP]
>UniRef100_A9VCM2 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
            RepID=A9VCM2_MONBE
          Length = 1414

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = -2

Query: 513  NDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIGI 334
            N V  +  T G+EAAR+ IM +VQ V S YGI ++PRH  L++D MT +G      R GI
Sbjct: 1270 NHVMELEQTLGIEAARSIIMDQVQYVMSNYGIHINPRHTMLMSDLMTFKGEVLGITRFGI 1329

Query: 333  -ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
             +   S F+  SFE     L DA LRG+ D +   +  + +G  + +GTG  +L+ +
Sbjct: 1330 AKMKESVFMLASFEKTTDHLFDAALRGTTDSVDGVSECIILGVPMRIGTGLFKLLHE 1386

[217][TOP]
>UniRef100_Q464Y8 DNA-directed RNA polymerase, subunit A' n=1 Tax=Methanosarcina
           barkeri str. Fusaro RepID=Q464Y8_METBF
          Length = 426

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           +TN+++ +    G+EAAR  I++E        G+ VD RH+ L++D MT  G  +   R 
Sbjct: 266 STNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVSDLMTCDGEVKQIGRH 325

Query: 339 GIE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
           GI     S F + +FE   + L DA +RG VD L+     + VG+ + +GTG V L+
Sbjct: 326 GISGEKASVFARAAFEVTVNHLLDAGMRGDVDQLQGVTENIIVGQPIRMGTGDVHLI 382

[218][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +ND+  +L   G+EA R +++ E++ V S+YGI V+ RHLS + D MT +G   A  R G
Sbjct: 1243 SNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQRGILTAITRHG 1302

Query: 336  IES-SVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            I     SP  K SFE     L +A +    D LK     + +G++   GTGC E+
Sbjct: 1303 INRVDSSPLRKCSFEETVEILLEAAVFAETDPLKGITENIIMGQLAPFGTGCFEI 1357

[219][TOP]
>UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
            RepID=C4M626_ENTHI
          Length = 1379

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N +  +    G+EAAR+TI+ E+++V  AYG+ +D RHL L++D MT +G      R 
Sbjct: 1246 TSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRY 1305

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            GI +   S F   SFE     L DA +    D++K  +  + VG  V LGTG ++++
Sbjct: 1306 GISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQIL 1362

[220][TOP]
>UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
            RepID=B0EG66_ENTDI
          Length = 1379

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N +  +    G+EAAR+TI+ E+++V  AYG+ +D RHL L++D MT +G      R 
Sbjct: 1246 TSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRY 1305

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            GI +   S F   SFE     L DA +    D++K  +  + VG  V LGTG ++++
Sbjct: 1306 GISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQIL 1362

[221][TOP]
>UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
            RepID=C4V991_NOSCE
          Length = 1335

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N +  +    G+EAARA I+ E++ V   +GI +DPRH+ L+AD MT++G      R 
Sbjct: 1213 TSNAILEIQEVLGIEAARAHIISEIEYVVGKHGIKIDPRHVMLLADTMTYKGEVLGITRF 1272

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI + S S  +  SFE  +  L +A +R   D++K  +  + +G+ + +GTG V+L
Sbjct: 1273 GISKMSCSTLMLASFEQTSEHLFEAAIRSRSDEVKGVSESIILGKNIGIGTGEVQL 1328

[222][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XZZ0_ASPFC
          Length = 1453

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TN+V  M    G+EAAR TI++E+  V     +G+DPRH+ L+AD MT++G      R 
Sbjct: 1296 STNNVMEMRDVLGIEAARVTIVQEISEVMK--DMGIDPRHMQLLADVMTYKGEVLGITRF 1353

Query: 339  GIESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+       L++ SFE  A  L DA   G  D ++  +  + +G+ V LGTG +E+V+++
Sbjct: 1354 GLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVVRKL 1413

[223][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D5Y9_NEOFI
          Length = 1453

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TN+V  M    G+EAAR TI++E+  V     +G+DPRH+ L+AD MT++G      R 
Sbjct: 1296 STNNVMEMRDVLGIEAARVTIVQEISEVMK--DMGIDPRHMQLLADVMTYKGEVLGITRF 1353

Query: 339  GIESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+       L++ SFE  A  L DA   G  D ++  +  + +G+ V LGTG +E+V+++
Sbjct: 1354 GLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVVRKL 1413

[224][TOP]
>UniRef100_A4WNA0 DNA-directed RNA polymerase, subunit A' n=1 Tax=Pyrobaculum
           arsenaticum DSM 13514 RepID=A4WNA0_PYRAR
          Length = 379

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+H +    G+EAARA + +E++ V    G+ VD RH+ ++AD MT  G  R   R G
Sbjct: 261 SNDLHEVEEVLGIEAARALVAQEIKRVLDEQGLDVDIRHMYMVADTMTWSGRLRPIGRHG 320

Query: 336 -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            + +  SP  + +FE     L +A++RG  +  K     +  G+ + +GTG V L+ Q
Sbjct: 321 VVGTKESPLARAAFEVTVKTLIEASVRGEEEAFKGVVESIIAGKYIPIGTGIVRLLMQ 378

[225][TOP]
>UniRef100_A3DMP5 DNA-directed RNA polymerase, subunit A' n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DMP5_STAMF
          Length = 421

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +    G+EAARA I+RE ++V    G+ VD RHL L+AD MT  G  R   R+G
Sbjct: 275 TNNIAEIEEILGIEAARAAIIRETKNVLEDQGLDVDIRHLILLADMMTWTGKIRQVGRMG 334

Query: 336 IE-SSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
           I     S   + +FE     L +A + G VD LK     + +G+ V +GTG VE+
Sbjct: 335 IAGEKPSVLARATFEMTVQKLVEAAVEGEVDMLKGVPENVIIGQPVPVGTGIVEI 389

[226][TOP]
>UniRef100_B3A010 RNA polymerase subunit C n=1 Tax=Haloarcula japonica
           RepID=B3A010_HALJP
          Length = 395

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIG-VDPRHLSLIADFMTHQGGYRACNR 343
           T N++H +    GVEAAR T++ E  +     G+  V+ RHL L+AD MT++G   +  R
Sbjct: 272 TCNNIHEIYRELGVEAARETLINETMNTLEEQGLDDVNVRHLMLVADIMTNEGTIESIGR 331

Query: 342 IGIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI  S    L + +FE   + L DA + G VD+L      + VG+ ++LGTG V L
Sbjct: 332 HGISGSKDSVLARAAFEVTVNHLLDAAIHGEVDELDGVTENVIVGKPIKLGTGDVNL 388

[227][TOP]
>UniRef100_Q5UZR5 DNA-directed RNA polymerase subunit A'' n=1 Tax=Haloarcula
           marismortui RepID=RPOA2_HALMA
          Length = 395

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIG-VDPRHLSLIADFMTHQGGYRACNR 343
           T N++H +    GVEAAR T++ E  +     G+  V+ RHL L+AD MT++G   +  R
Sbjct: 272 TCNNIHEIYRELGVEAARETLINETMNTLEEQGLDDVNVRHLMLVADIMTNEGTIESIGR 331

Query: 342 IGIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI  S    L + +FE   + L DA + G VD+L      + VG+ ++LGTG V L
Sbjct: 332 HGISGSKDSVLARAAFEVTVNHLLDAAIHGEVDELDGVTENVIVGKPIKLGTGDVNL 388

[228][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+  +  T+G+E AR  I  E+ +V S  G  V+ RHLSL+ D MT +G   A  R 
Sbjct: 1278 TSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRH 1337

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            G+   +    +K SFE     L +A   G  D LK  +  + +G+V+  GTGC +L+
Sbjct: 1338 GVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLL 1394

[229][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
            RepID=A9V5W6_MONBE
          Length = 1307

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+  +  T+G+E AR  I  E+ +V S  G  V+ RHLSL+ D MT +G   A  R 
Sbjct: 842  TSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRH 901

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            G+   +    +K SFE     L +A   G  D LK  +  + +G+V+  GTGC +L+
Sbjct: 902  GVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLL 958

[230][TOP]
>UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0V3B7_PHANO
          Length = 1473

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +N V  +    G+EAARATIMRE+ +V     + +DPRH++L+AD MT +G      R G
Sbjct: 1336 SNHVMEVRTVLGIEAARATIMREISAVMG--NMDIDPRHMALLADVMTFKGDVYGITRFG 1393

Query: 336  IESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            ++ +    L++ SFE     L +A  RG  D +   +  + +G+ ++LGTG +++V+ +
Sbjct: 1394 LQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQSMKLGTGALQVVRPL 1452

[231][TOP]
>UniRef100_Q8ZYQ7 DNA-directed RNA polymerase subunit A'' n=1 Tax=Pyrobaculum
           aerophilum RepID=RPOA2_PYRAE
          Length = 379

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           +ND+H +    G+EA RA + +E++ V    G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 261 SNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIRHMYLVADAMTWSGRLRPIGRHG 320

Query: 336 -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            + S  SP  + +FE     L +A++RG  +  K     +  G+ V +GTG V L+ Q
Sbjct: 321 VVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIAGKYVPIGTGIVRLLMQ 378

[232][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4UCP5_THEAN
          Length = 1678

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV  +   +G+EAAR  ++RE+++V S  G  V+ RHLSL+ D MT +G   +  R G
Sbjct: 1343 SNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHG 1402

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            I  +   P +K SFE     L  A + G VD LK     + VG++   GTG  +++
Sbjct: 1403 INRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPYGTGAFDIM 1458

[233][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N0F9_THEPA
          Length = 1681

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            +NDV  +   +G+EAAR  ++RE+++V S  G  V+ RHLSL+ D MT +G   +  R G
Sbjct: 1343 SNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHG 1402

Query: 336  I-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            I  +   P +K SFE     L  A + G VD LK     + VG++   GTG  +++
Sbjct: 1403 INRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPYGTGAFDIM 1458

[234][TOP]
>UniRef100_C9RDK7 RNA polymerase Rpb1 domain 5 n=1 Tax=Methanocaldococcus vulcanius M7
            RepID=C9RDK7_9EURY
          Length = 799

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            TTN++  +    G+EAAR  I+ E+++     G+ VD RHL L+AD MT  G  +   R 
Sbjct: 669  TTNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDVRHLMLVADIMTADGEVKPIGRH 728

Query: 339  GIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            G+       L + +FE     L  +  RG VD LK     + VG+ + LGTGCV+L+
Sbjct: 729  GVAGEKGSVLARAAFEETVKHLYASAERGDVDKLKGVIENVIVGKPIYLGTGCVDLM 785

[235][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+  ++   G+EA R  +++E+++V S  G  V+ RHL+++AD MT++G   A  R 
Sbjct: 1346 TSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRH 1405

Query: 339  GIES-SVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            GI      P ++ SFE     L DA +    DD+K     + +G++  LGTG  E+
Sbjct: 1406 GINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEV 1461

[236][TOP]
>UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum
            RepID=UPI00017927B1
          Length = 1355

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N+   +    G+EA+RATI+ E+ SV   +GI +DPRH  LIAD MT +G      R 
Sbjct: 1201 TSNNTFQVWNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTSRGELLGITRF 1260

Query: 339  GIESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV 172
            G+       L + SFE  +  L DA   G  D +   +  + +G  + LGTG  +L+
Sbjct: 1261 GLSKMKESVLNLASFEKTSDHLFDAAYYGQTDTINGVSESIIMGIPINLGTGFFKLI 1317

[237][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8C4M1_THAPS
          Length = 1422

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            TTN +  +  T GVEAAR +I  E+  + +AYGIG+D RHL L++D MT +G      R 
Sbjct: 1281 TTNHIIEVEQTLGVEAARTSISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRF 1340

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQ 166
            G+ +   S  +  SFE     L DA + G  D +   +  + +G  + +GTG  +L+++
Sbjct: 1341 GVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDGVSECIIMGIPIPIGTGLFKLLKR 1399

[238][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
            RepID=Q2U3T5_ASPOR
          Length = 1447

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TN+V  M    G+EAAR TI+RE+  V     + +DPRH+ L+AD MT++G      R 
Sbjct: 1296 STNNVMEMREVLGIEAARTTIVREISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRF 1353

Query: 339  GIESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+       L++ SFE  A  L DA   G  D ++  +  + +G+ V LGTG +E+V+++
Sbjct: 1354 GLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRRM 1413

[239][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FEK3_NANOT
          Length = 1443

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN +  M    G+EAAR TI+ E+ SV S  G+ +DPRH+ L+AD MT++G      R G
Sbjct: 1289 TNHIMEMRDVLGIEAARTTIIDEISSVMS--GMSIDPRHMQLLADVMTYKGEVLGITRFG 1346

Query: 336  IESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +       L++ SFE  A  L DA   G  D ++  +  + +G+ + LGTG +E+V+ +
Sbjct: 1347 LAKIRDSVLQLASFEKTADHLFDAGGAGRRDAVQGVSECIIMGKTISLGTGSMEVVRDL 1405

[240][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
            RepID=B8NTG3_ASPFN
          Length = 1436

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            +TN+V  M    G+EAAR TI+RE+  V     + +DPRH+ L+AD MT++G      R 
Sbjct: 1285 STNNVMEMREVLGIEAARTTIVREISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRF 1342

Query: 339  GIESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            G+       L++ SFE  A  L DA   G  D ++  +  + +G+ V LGTG +E+V+++
Sbjct: 1343 GLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRRM 1402

[241][TOP]
>UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q6K6_MALGO
          Length = 1376

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN V  M    G+EAAR++I RE+    +++G+ +DPRH+ L+AD MT++G      R G
Sbjct: 1244 TNHVMEMQQVLGIEAARSSIYREIDYTMASHGMSIDPRHVMLLADVMTYKGEVLGITRFG 1303

Query: 336  IESSVSPFLKM-SFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVE-LGTGCVELVQQI 163
            +       L + SFE     L DA L G  D +   +  + +G   + +GTG   LV Q 
Sbjct: 1304 VAKMKDSVLMLASFEKTTDHLFDAALFGKSDSISGVSESIIMGNPAQTVGTGMPALVSQK 1363

Query: 162  GGLAP 148
              LAP
Sbjct: 1364 PTLAP 1368

[242][TOP]
>UniRef100_C7P942 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Methanocaldococcus
           fervens AG86 RepID=C7P942_METFA
          Length = 387

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++  +    G+EAAR  I+ E+++     G+ VD RHL L+AD MT  G  +   R G
Sbjct: 260 TNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDIRHLMLVADMMTADGEVKPIGRHG 319

Query: 336 IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
           +       L + +FE     L  A  RG VD LK     + VG+ + LGTGCVEL
Sbjct: 320 VAGEKGSVLARAAFEETVKHLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVEL 374

[243][TOP]
>UniRef100_Q58446 Mja rpoA2 intein n=1 Tax=Methanocaldococcus jannaschii
            RepID=RPOA2_METJA
          Length = 859

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = -2

Query: 516  TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
            TN++  +    G+EAAR  I+ E+++     G+ VD RHL L+AD MT  G  +   R G
Sbjct: 731  TNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDIRHLMLVADIMTADGEVKPIGRHG 790

Query: 336  IESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
            +       L + +FE     L  A  RG VD LK     + VG+ + LGTGCVEL
Sbjct: 791  VAGEKGSVLARAAFEETVKHLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVEL 845

[244][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+  +    G+EA R  + RE+  V S  G  V+ RHL+L+ D MT +G   A  R 
Sbjct: 1328 TSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRH 1387

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV--- 172
            G+      P +K SFE     L +A   G  D +K  +  + +G++   GTGC +L+   
Sbjct: 1388 GVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDA 1447

Query: 171  QQIGGLAPGH 142
            ++ G ++P +
Sbjct: 1448 EKCGAMSPSY 1457

[245][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+ND+  +    G+EA R  + RE+  V S  G  V+ RHL+L+ D MT +G   A  R 
Sbjct: 1328 TSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRH 1387

Query: 339  GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELV--- 172
            G+      P +K SFE     L +A   G  D +K  +  + +G++   GTGC +L+   
Sbjct: 1388 GVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDA 1447

Query: 171  QQIGGLAPGH 142
            ++ G ++P +
Sbjct: 1448 EKCGAMSPSY 1457

[246][TOP]
>UniRef100_Q3IUN1 DNA-directed RNA polymerase subunit A'' (Subunit C) n=1
            Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IUN1_NATPD
          Length = 894

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIG-VDPRHLSLIADFMTHQGGYRACNR 343
            T N++H +    G+EAAR  I+ E  +     G+  V+ RHL L+AD MT+ G   +  R
Sbjct: 764  TCNNIHEIHNNLGIEAAREAIIEETMNTLEEQGLDDVNIRHLMLVADIMTNNGEIESIGR 823

Query: 342  IGIESSVSPFL-KMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
             GI  +    L + +FE   + L DA + G VDDL      + VG+ ++LGTG V+L
Sbjct: 824  HGISGNKDSVLARAAFEVTVNHLLDAAIHGEVDDLDGVTENVIVGKPIKLGTGDVDL 880

[247][TOP]
>UniRef100_A8TEB9 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Methanococcus
           voltae A3 RepID=A8TEB9_METVO
          Length = 387

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -2

Query: 519 TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
           TTN++  +    GVEAAR  I+ E+ +  S  G+ VDPRHL +++D MT  G  +   R 
Sbjct: 261 TTNNIIEIQDVLGVEAARNAIIYEMAATLSNQGLTVDPRHLMMVSDLMTTDGVVKPIGRH 320

Query: 339 GI-ESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVEL 175
           GI     S   + +FE     L  A++RG  D+L      + VG+ + +GTGC+ +
Sbjct: 321 GIGGEKASVLARAAFEETVKHLYSASMRGYSDELDGVVENIIVGKPISIGTGCINV 376

[248][TOP]
>UniRef100_Q9V113 DNA-directed RNA polymerase subunit A'' n=1 Tax=Pyrococcus abyssi
           RepID=RPOA2_PYRAB
          Length = 397

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = -2

Query: 516 TNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRIG 337
           TN++H +    G+EAAR  I+ E+ +     G+ VD RH+ L+AD MT  G  R   R G
Sbjct: 268 TNNIHEIAEVLGIEAARNAIIEEIMNTMREQGLEVDIRHIMLVADIMTLDGVVRPIGRHG 327

Query: 336 -IESSVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            +    S   + +FE     L +A  RG VD+L      + +G+ V +GTG V+L  ++
Sbjct: 328 VVGEKASVLARAAFEITVQHLFEAAERGEVDNLSGVIENVLIGQPVPVGTGMVKLTMKL 386

[249][TOP]
>UniRef100_UPI0001505876 NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside
            binding / zinc ion binding n=1 Tax=Arabidopsis thaliana
            RepID=UPI0001505876
          Length = 1376

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N+V  +  T G+EAAR TI+ E+ +V   +G+ +D RH+ L+AD MT++G      R 
Sbjct: 1242 TSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRT 1301

Query: 339  GIES-SVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+    S  ++ SFE     L  A   G VD+++     + +G  ++LGTG ++++Q+ 
Sbjct: 1302 GIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRT 1361

Query: 162  GGL 154
              L
Sbjct: 1362 DDL 1364

[250][TOP]
>UniRef100_Q9LVH0 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
            RepID=Q9LVH0_ARATH
          Length = 1383

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
 Frame = -2

Query: 519  TTNDVHAMLVTYGVEAARATIMREVQSVFSAYGIGVDPRHLSLIADFMTHQGGYRACNRI 340
            T+N+V  +  T G+EAAR TI+ E+ +V   +G+ +D RH+ L+AD MT++G      R 
Sbjct: 1249 TSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRT 1308

Query: 339  GIES-SVSPFLKMSFETAAHFLTDATLRGSVDDLKSPAARLCVGRVVELGTGCVELVQQI 163
            GI+    S  ++ SFE     L  A   G VD+++     + +G  ++LGTG ++++Q+ 
Sbjct: 1309 GIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRT 1368

Query: 162  GGL 154
              L
Sbjct: 1369 DDL 1371