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[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 310 bits (794), Expect = 7e-83
Identities = 156/156 (100%), Positives = 156/156 (100%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE
Sbjct: 131 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 190
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA
Sbjct: 191 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 250
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD 470
VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD
Sbjct: 251 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD 286
[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 102 bits (253), Expect = 4e-20
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI+TLRNGVVRVED E+NLYAAIDLVCDKIR+KL ++KEKAI++G WPG+AGPKE+V+
Sbjct: 135 TIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGKWPGKAGPKENVEGR 194
Query: 183 DFQEYLKEVKMDTQ 224
+ +++TQ
Sbjct: 195 RTSKSTSRCQVETQ 208
[3][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 94.4 bits (233), Expect = 8e-18
Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKA--ISRGAWPGRAGPKEDVD 176
T+++ R+GV+R E+ + YA+IDL I+ KL+KIKEK + R G G E+
Sbjct: 132 TLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEKETEVRRDGDGGAGGAWEE-- 189
Query: 177 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDAL 356
+ +D L + +E AE + A V+R+K + P+TVEEA++ L
Sbjct: 190 --------ELPLLDDDLVEADELAAAVGAEDEQTVVAKVVRTKVFEMP-PLTVEEALEQL 240
Query: 357 EAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+ VGH+FY FR+ T V I+Y+R+ GGYG+I+P+
Sbjct: 241 DNVGHNFYCFRDEATGQVNILYRRKEGGYGLIIPK 275
[4][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 92.4 bits (228), Expect = 3e-17
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ +YA+ID+V D IR KL+KIKEK G P + +
Sbjct: 148 TLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKD------GGHGRPSKMRKQP 201
Query: 183 DFQEYLKEVKMDTQ---------LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITV 335
E L V MD + L D EE + +L+ V+R+K + P++
Sbjct: 202 KLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLSD----EVVRTKYFEMP-PMSP 256
Query: 336 EEAIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
EEA++ L V H FY FR M + V ++YKR+ GGYG+IVP+
Sbjct: 257 EEALEQLMNVDHDFYAFRNMESGEVNVLYKRKHGGYGLIVPK 298
[5][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 91.7 bits (226), Expect = 5e-17
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T+YT RNG++R E+ ++LYA+ID V DK+ KL+K+KEK IS+ + PK D
Sbjct: 143 TVYT-RNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAPKAQTDAI 201
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ + + + D +E ++ +F + + TV EA + +E
Sbjct: 202 VEEMQAADEALADESMDYDEVVREKFHPVRK-----------------CTVYEAAEEMEN 244
Query: 363 VGHSFYVFREMTT-DTVQIVYKRESGGYGVIVP 458
+GH+F+ FR + + V +VYKR++GGYGVIVP
Sbjct: 245 LGHTFFAFRNVAQGNEVNVVYKRDAGGYGVIVP 277
[6][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 89.7 bits (221), Expect = 2e-16
Identities = 55/153 (35%), Positives = 86/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ +YA IDLV I+ KL+KIKEK G + + V E
Sbjct: 199 TLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHM-KGFNRLKVREP 257
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ +++V+ T EE+ + + ++R+KT + P+TV EA++ LE
Sbjct: 258 VIEPVVEDVEDSTDSSVGEEEEEDDLIK-------EIVRTKTFEMP-PLTVAEAVEQLEL 309
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY F+ T + IVYKR+ GGYG+I+P+
Sbjct: 310 VSHDFYGFQNEETGEINIVYKRKEGGYGLIIPK 342
[7][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 89.4 bits (220), Expect = 3e-16
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKEDV 173
T++T ++GV+R E+ +YA+IDLV I+ KL+KIKEK G R +E V
Sbjct: 148 TLFTKKHGVIRAEEDAETIYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPV 207
Query: 174 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDA 353
E VK DT +++ + + Y V+R+K + P+TV EAI+
Sbjct: 208 AEP--------VKDDT------DEVDGVLGDEDEDYIDEVVRTKYFDMP-PLTVSEAIEQ 252
Query: 354 LEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
L+ V H FY FR T + I+YKR++GGYG+I+P+
Sbjct: 253 LKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPK 288
[8][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 88.2 bits (217), Expect = 6e-16
Identities = 53/153 (34%), Positives = 86/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T R+GVVR E+ ++A+IDLV I+ KL+KIK+K G + +
Sbjct: 70 TLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRH------MKGFNRL 123
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+E + +V ++ + +Q + E V+R+K + P+TV EAI+ LE
Sbjct: 124 KVREPMHQVVVEDDADEVSQQEDEDYIE-------EVVRTKYFDMP-PLTVSEAIEQLEH 175
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY FR+ T + I+YKR++GGYG+I+P+
Sbjct: 176 VHHDFYGFRDEETGEINIIYKRKAGGYGLIIPK 208
[9][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 88.2 bits (217), Expect = 6e-16
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV-DE 179
T++T R+GV+R E+ + YA+IDL ++ KL+KIKEK R G + V DE
Sbjct: 132 TLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETE----VRRGGDADGVWDE 187
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ L + D D E + AE A V+R+K + P+TVEEA++ LE
Sbjct: 188 IPPADLLPPAEAD----DLEAAVG---AEDEETVLAKVVRTKVFEMP-PLTVEEALEQLE 239
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY FR+ T V I+Y+R+ GGYG+I+P+
Sbjct: 240 NVDHDFYCFRDEATGQVNILYRRKEGGYGLIIPK 273
[10][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 88.2 bits (217), Expect = 6e-16
Identities = 53/153 (34%), Positives = 86/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T R+GVVR E+ ++A+IDLV I+ KL+KIK+K G + +
Sbjct: 145 TLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRH------MKGFNRL 198
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+E + +V ++ + +Q + E V+R+K + P+TV EAI+ LE
Sbjct: 199 KVREPMHQVVVEDDADEVSQQEDEDYIE-------EVVRTKYFDMP-PLTVSEAIEQLEH 250
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY FR+ T + I+YKR++GGYG+I+P+
Sbjct: 251 VHHDFYGFRDEETGEINIIYKRKAGGYGLIIPK 283
[11][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 87.8 bits (216), Expect = 7e-16
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+ V+R E++ NLYA+IDLV DKI KL+K+KEK ++D
Sbjct: 62 VNGSVIRAEESSENLYASIDLVADKIARKLRKLKEK-------------RQDKSRAKDTN 108
Query: 195 YLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ E ++ T L D+ QL P V+R K + P+T++EA++ LE V H
Sbjct: 109 SVVEPEVVTDLVGDRTPQL-----------PEQVVRMKYFAMP-PMTIQEALEHLEMVDH 156
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVFR T + +VY+R GGYGVI P+
Sbjct: 157 DFYVFRNRDTGEINVVYERNHGGYGVIQPR 186
[12][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 87.8 bits (216), Expect = 7e-16
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV--- 173
T++T R+GV+R E+ + YA+IDL I+ KL+KIKEK G P D
Sbjct: 141 TLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPS 200
Query: 174 ----DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEE 341
+++D Q LK+++ D++ L + V+R+K + P++VEE
Sbjct: 201 LLDNNDDDAQAQLKDLEEAVGAEDEDTVLTK------------VVRTKVFEMP-PLSVEE 247
Query: 342 AIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
A++ L V H+FY FR+ T + ++YKR+ GG+G+IVP+
Sbjct: 248 AMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPK 287
[13][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 87.8 bits (216), Expect = 7e-16
Identities = 59/162 (36%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG------PK 164
T++T R+GVVR E+ +YA+IDLV I+ KL+KIKEK G P
Sbjct: 146 TLFTNRHGVVRAEEDAETIYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 205
Query: 165 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEA 344
V E D E ++ D+ EE ++ +F ++ P+TV EA
Sbjct: 206 PQVVEGDADEVSQQEVEDSI----EEVVRTKFFDM-----------------PPLTVSEA 244
Query: 345 IDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD 470
I+ LE V H FY FR T + IVYKR++GGYG+I+P+ D
Sbjct: 245 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGND 286
[14][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 87.4 bits (215), Expect = 1e-15
Identities = 53/153 (34%), Positives = 87/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GV+R E+ ++Y +ID+V I+ KL+KIKEK RG + D E
Sbjct: 145 TLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPE 204
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
V+ D + +EE+++ ++ + V+R K+ + P++V EAI+ LE
Sbjct: 205 ALL-----VQEDLETLSQEEEVEDDKSDG---FVTEVVRKKSFDMP-PLSVNEAIEQLEN 255
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY FR T + IVY+R+ GGYG+I+P+
Sbjct: 256 VDHDFYGFRNEETGEINIVYRRKEGGYGLIIPK 288
[15][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 87.4 bits (215), Expect = 1e-15
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T R+GV+R E+ +LY++IDLV I+ KL+KIK+K G + D E
Sbjct: 135 TLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPE 194
Query: 183 DF----QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAID 350
+E L+EV+ E+ F E V+R+K + P+T+ EA++
Sbjct: 195 PVRITREEVLEEVESAPAPVSVEDD---DFIE-------EVVRTKYFDMP-PLTITEAVE 243
Query: 351 ALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
LE V H FY FR T + I+YKR+ GGYG+I+P+
Sbjct: 244 QLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK 280
[16][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 87.0 bits (214), Expect = 1e-15
Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIYT V+R E++ NLYA+IDLV DKI +L+K KE+ ++D
Sbjct: 59 TIYT-NGSVIRAEESSENLYASIDLVSDKIARQLRKFKER-------------RQDKHSR 104
Query: 183 DFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+E + V + T L D+ +L P V+R+K + P+T+ EA++ LE
Sbjct: 105 SKEEPVVSVPLVTDLTGDRTPEL-----------PEEVVRTKYFAMP-PMTLREALEQLE 152
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD*AGGSAS 491
V H FY+FR T + ++Y+R GGYGVI P+ G SAS
Sbjct: 153 LVDHDFYMFRNAETGEINVIYERNHGGYGVIQPR----NGSSAS 192
[17][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 87.0 bits (214), Expect = 1e-15
Identities = 60/156 (38%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKEDV 173
T++T R+GVVR E+ + Y +IDLV I+ KL+KIKEK G R +E V
Sbjct: 131 TLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPV 190
Query: 174 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDA 353
++ +E D L +EE+ V+R+K + P+TV EAI+
Sbjct: 191 EQLPVEE-------DEILSPQEEEESID----------EVVRTKYFDMP-PLTVAEAIEQ 232
Query: 354 LEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
LE V H FY FR T + IVYKR+ GGYG+IVP+
Sbjct: 233 LENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPK 268
[18][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 87.0 bits (214), Expect = 1e-15
Identities = 56/153 (36%), Positives = 87/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ ++YA+ID V D I KL+KIKEK G P + P+
Sbjct: 148 TLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGHGR-PAKYSPR------ 200
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ EV + ++ D + L+R+ +L P V+R+K + P+ EA++ L
Sbjct: 201 -----IGEV-LSNEVVDLDPILERKPDDL----PDEVVRTKYFEMR-PMKPLEALEQLVN 249
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY FR + + + I+YKR GGYG+IVP+
Sbjct: 250 VGHDFYAFRNVESGEINILYKRTHGGYGIIVPR 282
[19][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 85.5 bits (210), Expect = 4e-15
Identities = 52/153 (33%), Positives = 87/153 (56%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GV+R E+ ++Y +ID+V I+ KL+KIKEK G + D E
Sbjct: 117 TLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRDPE 176
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ V+ D + +EE+++ + + + V+R K+ + P++V EAI+ LE
Sbjct: 177 -----VLLVQEDLETLPQEEEVEDD--DKSDGFVTEVVRKKSFDMP-PLSVNEAIEQLEN 228
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY FR T + IVY+R+ GGYG+I+P+
Sbjct: 229 VDHDFYGFRNEETGEINIVYRRKEGGYGLIIPK 261
[20][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 84.7 bits (208), Expect = 6e-15
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK G K V E
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNF---------GKKTHVQE 107
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ + ++ D + D+ +L P+ V+R K + P+T++EA++ L+
Sbjct: 108 KTSEVLPEDPVPDNLIGDRAPEL-----------PSEVVRMKYFAMP-PMTIDEALEQLQ 155
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
V H FY+F T+ + ++Y R GGYGVI P++
Sbjct: 156 LVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPRL 190
[21][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 84.3 bits (207), Expect = 8e-15
Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T+YT RNGVVR E+ +NLYA+ID V DKI KL+KIKEK S+ A +A PK
Sbjct: 106 TVYT-RNGVVRSEEEADNLYASIDAVSDKIERKLRKIKEKKNSKKAGKTKANPK--AQTA 162
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
D E ++ + E M KT T EA + +E+
Sbjct: 163 DIVAAAAEA----------DEARADEIEFEETVGVKYMAVKT------STAMEAAEEMES 206
Query: 363 VGHSFYVFREMTT-DTVQIVYKRESGGYGVIVP 458
+GH FY F+ V +VYKR++GGY V+VP
Sbjct: 207 LGHVFYAFKNKANGGEVNVVYKRDAGGYAVLVP 239
[22][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 83.2 bits (204), Expect = 2e-14
Identities = 54/153 (35%), Positives = 83/153 (54%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ ++YA+ID V D I KL+KIKEK G P +
Sbjct: 70 TLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKD------GGHGRPTKSRHSP 123
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
E L + ++ D + L R+ +L P ++R+K + P+ EA++ L
Sbjct: 124 RIGEVLSD-----EVVDLDPILGRKPDDL----PDEIVRTKYFEMR-PMKPLEALEQLVN 173
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY FR + + + I+YKR GGYG+IVP+
Sbjct: 174 VGHDFYAFRNVESGEINILYKRTHGGYGIIVPR 206
[23][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/153 (35%), Positives = 85/153 (55%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ LY +ID+V I+ KL+KIKEK G +
Sbjct: 138 TLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGR-----------HMK 186
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
F LK +T L ++E + Q + + I ++R+K + P+TV EA++ LE
Sbjct: 187 GFNR-LKVRDPETPLVEEEADVVPQKEDGDLIN--EIVRTKYFDMP-PLTVPEAVEQLEN 242
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H F+ FR T + I+YKR++GGYG+I+P+
Sbjct: 243 VDHDFFGFRNEETGEINILYKRKAGGYGLIIPK 275
[24][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 82.8 bits (203), Expect = 2e-14
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDVD 176
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + + A P +AG E V
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERKLEQNAHSPVKAG--EVVQ 114
Query: 177 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDAL 356
+E +E L + D++ +L P V+R K + P++++EA++ L
Sbjct: 115 QETIEENL--------IGDRQPEL-----------PPEVVRMKYFGMP-PMSIDEALEQL 154
Query: 357 EAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD*AGGSAS 491
+ V H F++FR T+ + ++Y R GG+GVI P+ + G +S
Sbjct: 155 QLVDHDFFMFRNRDTNEINVIYIRNHGGFGVIQPRPTNNNGHQSS 199
[25][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/153 (35%), Positives = 85/153 (55%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T++T ++GVVR E+ LY +ID+V I+ KL+KIKEK G +
Sbjct: 70 TLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGR-----------HMK 118
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
F LK +T L ++E + Q + + I ++R+K + P+TV EA++ LE
Sbjct: 119 GFNR-LKVRDPETPLVEEEADVVPQKEDGDLIN--EIVRTKYFDMP-PLTVPEAVEQLEN 174
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H F+ FR T + I+YKR++GGYG+I+P+
Sbjct: 175 VDHDFFGFRNEETGEINILYKRKAGGYGLIIPK 207
[26][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 82.8 bits (203), Expect = 2e-14
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + G E V++
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQH--GNVKTSEIVED 114
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ +E L + D+ +L P+ V+R K + P+ +E+A++ L+
Sbjct: 115 KPVEENL--------IGDRAPEL-----------PSEVLRMKYFAMP-PMAIEDALEQLQ 154
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
V H FY+FR TD + ++Y R GGYGVI P
Sbjct: 155 LVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQP 187
[27][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 82.4 bits (202), Expect = 3e-14
Identities = 52/154 (33%), Positives = 77/154 (50%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T+Y +RN VVRVE + ++YAAID DK+ +L+K K + I R R+ +
Sbjct: 60 TVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDRKQ---RSQAPAPAPSK 115
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
D + + EV D L +R K + L P+T EEA+ +
Sbjct: 116 DLSDLIDEVADDDML----------------------VREKYIDL-HPMTEEEALVQTDL 152
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
+GH FYVF TT + +VY R +GGYG+I P++
Sbjct: 153 IGHDFYVFENATTGLINVVYHRHNGGYGIIKPKL 186
[28][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 82.4 bits (202), Expect = 3e-14
Identities = 58/154 (37%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK + P+ V
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNHK-------PQSSVKS 109
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
D EVK D + D+E +L P V+R K + P+++EEA LE
Sbjct: 110 PDVLPET-EVKEDL-IGDREVEL-----------PPEVIRMKYFAMP-PMSIEEAKHQLE 155
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR TD + ++Y R GG+GVI P+
Sbjct: 156 LVDHDFYMFRNQDTDEINVIYMRNHGGFGVIQPR 189
[29][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 82.0 bits (201), Expect = 4e-14
Identities = 50/153 (32%), Positives = 76/153 (49%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 59 TIYA-NGSVIRAEESSENLYASIDLVADKISRQLRKYKERK------------------- 98
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
Q+ + + T+ E + + P V+R+K + P+TV EA++ L+
Sbjct: 99 --QDQKTQAQPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMP-PMTVTEALEQLQL 155
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY+F T + ++Y+R GGYGVI P+
Sbjct: 156 VGHDFYMFHNAETGEINVIYERNHGGYGVIQPR 188
[30][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 82.0 bits (201), Expect = 4e-14
Identities = 57/154 (37%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
TIY NG V+R E+ NLYA+IDLV DKI +L+K KEK R G+ E D+
Sbjct: 59 TIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKKYKEKLRDR---KGQLSTAETADQ 113
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
L + + T L + + EL P +++R+K + +TVE+A+ L+
Sbjct: 114 ------LSDGALVTDLLNGRQP------EL----PQDIVRTKYFAMP-AMTVEDALAQLQ 156
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR T + ++Y+R GGYGVI P+
Sbjct: 157 LVDHDFYMFRNAATGEINVIYERNHGGYGVIQPR 190
[31][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 82.0 bits (201), Expect = 4e-14
Identities = 52/153 (33%), Positives = 78/153 (50%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIY V+R E++ NLYA+IDLV DKI +L+K KE+ P
Sbjct: 59 TIYA-NGSVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTN-------- 109
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ + E D+ + D+ +L P V+R+K + P+T+ EA + L+
Sbjct: 110 --EAVVAEPVADSLIGDRTPEL-----------PGEVVRTKYFPMP-PMTLAEAQEQLQL 155
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY+FR T + ++Y+R GGYGVI P+
Sbjct: 156 VGHDFYMFRNAETGEINVIYERNHGGYGVIQPR 188
[32][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 82.0 bits (201), Expect = 4e-14
Identities = 53/153 (34%), Positives = 81/153 (52%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIY + V+R +++ +LYA+IDLV DKI+ +L+K KEK + + G + E
Sbjct: 59 TIYANKT-VIRAQESSEDLYASIDLVADKIQRQLRKYKEKQQKKTQTQPKTGAV--IHEA 115
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
E L + D+ +L P V+R K + P+T+EEA + L+
Sbjct: 116 PVVEDL--------IGDRTPEL-----------PTEVVRMKYFAMP-PMTIEEATEQLQL 155
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR TD + ++Y+R GGYGVI P+
Sbjct: 156 VDHDFYMFRNAKTDEINVIYERNHGGYGVIQPR 188
[33][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 81.6 bits (200), Expect = 5e-14
Identities = 50/150 (33%), Positives = 81/150 (54%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI + ++R ED+E NLYAAID+V DK+ +L++ K K +G + + +E + +
Sbjct: 59 TIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRRYKNKL--KGKYQSKG--QESIRFQ 114
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ ++ E K FD + ++F P++ EEA+ +E
Sbjct: 115 NIEDNAAEDKDGE--FDIVIERHKKFD------------------MKPMSPEEAVLQMEL 154
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
VGH FY+FR + TD + IVY+RE+GGYG+I
Sbjct: 155 VGHDFYMFRNIDTDEISIVYRRETGGYGLI 184
[34][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 81.3 bits (199), Expect = 7e-14
Identities = 50/153 (32%), Positives = 77/153 (50%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 59 TIYA-NGSVIRAEESSENLYASIDLVADKIARQLRKYKER-------------------- 97
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
++ K T++ E + + P V+R+K + P+T+ EA++ L+
Sbjct: 98 --RQDQKTQSQPTEVVVAESVVPDLIGDRTPELPNEVVRTKYFSMP-PMTLAEALEQLQL 154
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY+FR T + ++Y+R GGYGVI P+
Sbjct: 155 VGHDFYMFRNSETGEINVIYERNHGGYGVIHPR 187
[35][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 81.3 bits (199), Expect = 7e-14
Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK + P
Sbjct: 61 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNHKPQSSVKNP------ 112
Query: 180 EDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDAL 356
E L E +++ L D+E L P V+R K + P+++EEA L
Sbjct: 113 ----EVLPEREIEKDLIGDREAAL-----------PPEVIRMKYFAMP-PMSIEEAKHQL 156
Query: 357 EAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
E V H FY+FR TD + ++Y R GG+GVI P+
Sbjct: 157 ELVDHDFYMFRNQDTDEINVIYMRNHGGFGVIQPR 191
[36][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 80.9 bits (198), Expect = 9e-14
Identities = 50/153 (32%), Positives = 75/153 (49%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 59 TIYA-NGSVIRAEESSENLYASIDLVADKISRQLRKYKERK------------------- 98
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
Q+ + T+ E + + P V+R+K + P+TV EA++ L+
Sbjct: 99 --QDQKTQALPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMP-PMTVTEALEQLQL 155
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
VGH FY+F T + ++Y+R GGYGVI P+
Sbjct: 156 VGHDFYMFHNAETGEINVIYERNHGGYGVIQPR 188
[37][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 80.9 bits (198), Expect = 9e-14
Identities = 59/154 (38%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R E++ NLYA+ID V DK+ KL+K KE+ G R PK V
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRKYKER---NGIHRVRHTPKTSVAV 114
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ T + E Q AEL PA V+R+K + P+TV+EA+ LE
Sbjct: 115 AQ--------QPVTDPLNTERQ-----AEL----PAEVVRTKYFAMP-PMTVQEALHQLE 156
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FYVFR + + ++Y R GGYG+I P+
Sbjct: 157 LVDHDFYVFRNIENGEINVIYVRNHGGYGLIRPR 190
[38][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 80.9 bits (198), Expect = 9e-14
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ +LYA+IDLV DKI +L+K KEK ++ A
Sbjct: 66 TVYA--NGTVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNNKKA------------- 110
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+K ++ T + + + + EL PA V+R K + P+T++EA+ LE
Sbjct: 111 ---PNPVKVGEVTTATAIEGDLIGDRTPEL----PAEVIRMKYFAMP-PMTIDEALHQLE 162
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
V H FY+FR TD + ++Y+R GGYGVI P
Sbjct: 163 LVDHDFYMFRNKDTDEINVIYQRNHGGYGVIQP 195
[39][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 80.9 bits (198), Expect = 9e-14
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 RNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+NG V+R E+++ NLY AIDLV DK++ +L+K K+K R +E+
Sbjct: 65 KNGHVIRAEESQENLYPAIDLVVDKLKIQLKKYKDKMQKRH--------QENKSIRFDSP 116
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ + ++ L D E++L +++ + + P++ EEA+ +E VGH
Sbjct: 117 EINDSILEEDLEDFEDELF-------------IIKRRKRINIKPMSEEEAVLQMELVGHD 163
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FY+FR TD + +VYKR++GGYG+I
Sbjct: 164 FYIFRNDETDEIALVYKRKNGGYGII 189
[40][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 80.5 bits (197), Expect = 1e-13
Identities = 47/150 (31%), Positives = 80/150 (53%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI T+ ++R ED + NLY AID+V DK+ +L+K K++ + +D
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDK---------HKDNKSI 103
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
FQ+ + L D++E + EL V++ + P++ EEA+ +E
Sbjct: 104 RFQD------AEINLADEQEDYGDENQEL-------VIQRRKKFSVKPMSEEEAVLQMEL 150
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
+GH FY+F+ + +D + +VYKR +GGYG+I
Sbjct: 151 IGHDFYMFKNIDSDEIAVVYKRNNGGYGII 180
[41][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 80.5 bits (197), Expect = 1e-13
Identities = 47/150 (31%), Positives = 80/150 (53%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI T+ ++R ED + NLY AID+V DK+ +L+K K++ + +D
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDK---------HKDNKSI 103
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
FQ+ + L D++E + EL V++ + P++ EEA+ +E
Sbjct: 104 RFQD------SEINLADEQEDYGDENQEL-------VIQRRKKFSVKPMSEEEAVLQMEL 150
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
+GH FY+F+ + +D + +VYKR +GGYG+I
Sbjct: 151 IGHDFYMFKNIDSDEIAVVYKRNNGGYGII 180
[42][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 80.5 bits (197), Expect = 1e-13
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
TIY NG V+R E+ NLYA+IDLV DKI +L+K KE+ R G+ E D+
Sbjct: 59 TIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKKYKEELRDR---KGQLSTAETADQ 113
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
L + + T L + + EL P +++R+K + +TVE+A+ L+
Sbjct: 114 ------LSDGALVTDLLNGRQP------EL----PQDIVRTKYFAMP-AMTVEDALAQLQ 156
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR T + ++Y+R GGYGVI P+
Sbjct: 157 LVDHDFYMFRNAATGEINVIYERNHGGYGVIQPR 190
[43][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 80.5 bits (197), Expect = 1e-13
Identities = 47/150 (31%), Positives = 80/150 (53%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI T+ ++R ED + NLY AID+V DK+ +L+K K++ + +D
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDK---------HKDNKSI 103
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
FQ+ + L D++E + EL V++ + P++ EEA+ +E
Sbjct: 104 RFQD------AEINLADEQEDYGDENQEL-------VIQRRKKFSVKPMSEEEAVLQMEL 150
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
+GH FY+F+ + +D + +VYKR +GGYG+I
Sbjct: 151 IGHDFYMFKNIDSDEIAVVYKRNNGGYGII 180
[44][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 80.5 bits (197), Expect = 1e-13
Identities = 51/149 (34%), Positives = 77/149 (51%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L N VVR E++ +LYA+ID+V DK+ +L+K KEK R V D
Sbjct: 62 LNNVVVRAEESSESLYASIDMVTDKLTRQLRKYKEKR--------RDQDHATVRPTDVDA 113
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ + + D E L Q P V+RSK + P+TV+ A++ LE VGH
Sbjct: 114 TINAPDITSHNADISEVLNHQPK-----LPDTVVRSKYFAMP-PMTVQTALENLELVGHD 167
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FY+FR + T + ++Y+R GYG++ P+
Sbjct: 168 FYMFRNVETGEINVIYERNHKGYGLLQPR 196
[45][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 80.1 bits (196), Expect = 2e-13
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R E++ NLYA+ID V DK+ KL+K KE+ G R PK V
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRKYKER---NGVHRIRHSPKTSVAV 114
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
Q+ L T + E Q AEL P V+R+K + P+TV+EA+ LE
Sbjct: 115 A--QQPL------TDPLNTERQ-----AEL----PPEVVRTKYFAMP-PMTVQEALHQLE 156
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
V H FYVFR + + ++Y R+ GGYG+I P
Sbjct: 157 LVDHDFYVFRNIENGEINVIYVRKHGGYGLIRP 189
[46][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 79.3 bits (194), Expect = 3e-13
Identities = 51/150 (34%), Positives = 77/150 (51%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI + ++R ED E++LYAAID+VCDK+ ++ K K K + ++ E+VD
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDK-VQNNKSIRFENVDFI 111
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
D + +D EE Y V+ + P++ EEAI +E
Sbjct: 112 DNSSEFDD-------YDDEE------------YENIVIERRKKFNVKPMSSEEAILQMEL 152
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
VGH+FY+FR + IVYKR++GGYG+I
Sbjct: 153 VGHNFYMFRNQDNFEINIVYKRKAGGYGLI 182
[47][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 79.3 bits (194), Expect = 3e-13
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+ V+R E++ NLYA+IDLV DKI +L+K KEK ++G P + +
Sbjct: 62 VNGSVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKG--PNKGSNRS--------- 110
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRI----YPANVMRSKTVVLADPITVEEAIDALEA 362
K V + T + Q +L R P V+R K ++ P++V +A++ L+
Sbjct: 111 --KAVALQTP------EEQPLIGDLTRDRAPELPEEVVRCKYFAIS-PMSVHDALEQLDL 161
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FYVF T + ++Y+R GGYGVI P+
Sbjct: 162 VDHDFYVFENADTGQLNVIYERNHGGYGVIQPR 194
[48][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + A K
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRT---NAPVKTS--- 110
Query: 180 EDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDAL 356
E ++E +D L D+ +L PA V+R K + P+T+EEA+ L
Sbjct: 111 ----EVVQEKPLDGSLIGDRTPEL-----------PAEVVRMKYFAMP-PMTIEEALTQL 154
Query: 357 EAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+ V H FY+F T+ + ++Y+R GG+GVI P+
Sbjct: 155 QLVDHDFYMFCNKDTNEINVIYQRNHGGFGVIQPR 189
[49][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
TIY NG V+R +++ NLYA+IDLV DKI +L+K KEK +++ + G
Sbjct: 59 TIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTG------- 109
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ ++ +D + D+ +L P V+R+K + P++++EA++ L+
Sbjct: 110 ---EVVAQKPIVDDLIGDRTVKL-----------PEEVVRTKYFAMP-PMSIQEALEQLQ 154
Query: 360 AVGHSFYVFREMTTDTVQIVYKR-ESGGYGVIVPQ 461
+ H FY+FR TD + ++Y+R GGYGVI P+
Sbjct: 155 LIDHDFYMFRNAETDEINVIYQRSHHGGYGVIQPR 189
[50][TOP]
>UniRef100_B8BRE6 Light-repressed protein a n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BRE6_THAPS
Length = 198
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/152 (33%), Positives = 83/152 (54%)
Frame = +3
Query: 6 IYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEED 185
+ TL+ RV ++ ++YA+IDLV ++ KL+K KE+ + GP E+
Sbjct: 63 VTTLKGTTFRVAESSPDMYASIDLVAARLARKLRKYKERRLDGY----HGGPNMG---EN 115
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
E L +++D EE+ + I P + +K V + PI+++EAI AL+ +
Sbjct: 116 IAEVLNAIEVDESEDGAEEE--------SYIDPDQAVVTK--VKSTPISIKEAIFALDYI 165
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
H FYVFR+ T+ V +VYKR +GG G+I P+
Sbjct: 166 DHDFYVFRDEETNEVSVVYKRNAGGVGLIQPE 197
[51][TOP]
>UniRef100_UPI00006DCB57 hypothetical protein CdifQ_04002839 n=1 Tax=Clostridium difficile
QCD-32g58 RepID=UPI00006DCB57
Length = 138
Score = 78.6 bits (192), Expect = 5e-13
Identities = 50/150 (33%), Positives = 76/150 (50%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI + ++R ED E++LYAAID+VCDK+ ++ K K K + + + E
Sbjct: 4 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKV------KDKVQNNKSIRFE 57
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ + D +D EE + + R NV P++ EEAI +E
Sbjct: 58 NLDFIDNSSEFDDYDYDDEED---ENIVIERRKKFNVK---------PMSSEEAILQMEL 105
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
VGH+FY+FR + IVYKR++GGYG+I
Sbjct: 106 VGHNFYMFRNQDNFEINIVYKRKAGGYGLI 135
[52][TOP]
>UniRef100_A4XJ41 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Caldicellulosiruptor saccharolyticus DSM 8903
RepID=A4XJ41_CALS8
Length = 182
Score = 78.6 bits (192), Expect = 5e-13
Identities = 46/145 (31%), Positives = 78/145 (53%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+A N++Y+AIDLV D + +++K K K R +D + + + +E
Sbjct: 61 ILRAEEASNDMYSAIDLVVDSLERQIRKFKTKIAKRA---------KDAESLRYMTFEEE 111
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ +T ++EE + + A+ R +P P++V+EAI + +GHSF+VF
Sbjct: 112 AQQET---NQEENGEFKIAKTKR-FPIK-----------PMSVDEAILQMNLLGHSFFVF 156
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
TD V +VYKR G YG+I P+
Sbjct: 157 LNQDTDKVNVVYKRNDGAYGLIEPE 181
[53][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 78.6 bits (192), Expect = 5e-13
Identities = 50/150 (33%), Positives = 76/150 (50%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI + ++R ED E++LYAAID+VCDK+ ++ K K K + + + E
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKV------KDKVQNNKSIRFE 106
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
+ + D +D EE + + R NV P++ EEAI +E
Sbjct: 107 NLDFIDNSSEFDDYDYDDEED---ENIVIERRKKFNVK---------PMSSEEAILQMEL 154
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
VGH+FY+FR + IVYKR++GGYG+I
Sbjct: 155 VGHNFYMFRNQDNFEINIVYKRKAGGYGLI 184
[54][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 78.6 bits (192), Expect = 5e-13
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDE 179
T+Y V+R ++ NLYA+IDLV DKI +L+K KE+ + + A+ P + G DV +
Sbjct: 59 TVYA-NGAVIRAQEGSENLYASIDLVSDKIARQLRKYKERRLEQKAYSPVKTG---DVVQ 114
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ E + D++ +L P V+R K + +++EEA++ L+
Sbjct: 115 DQPVE-------GNLIGDRQPEL-----------PPEVVRMKYFAMP-LMSIEEALEQLQ 155
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR T+ + ++Y R GGYGVI P+
Sbjct: 156 LVDHDFYMFRNRNTNEINVIYIRNHGGYGVIQPR 189
[55][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 77.8 bits (190), Expect = 8e-13
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E++ NLYA+IDLV DKI +L+K KE+ Q+
Sbjct: 66 VIRAEESSENLYASIDLVADKIARQLRKYKER---------------------LQDQKTN 104
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
Q+ E + P V+R+K + P+TV EA + L+ VGH FY+F
Sbjct: 105 APPTNQVLVPEPVAADLIGDRTPELPNEVVRTKYFSMP-PMTVAEATEQLQLVGHDFYMF 163
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMR----D*AGGSASLALSER 509
T + ++Y+R GGYGVI P+ + G+++ A+SE+
Sbjct: 164 HNAETGEINVIYERNHGGYGVIQPRHNNGHTNGKNGNSAQAVSEK 208
[56][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 77.4 bits (189), Expect = 1e-12
Identities = 50/150 (33%), Positives = 79/150 (52%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
TI + ++R ED E++LYAAID+VCDK+ ++ K K K + ++ E++D
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTK-VKDKVQNNKSIRFENLDFI 111
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
D ++ FD + + + + R NV P++ EEAI +E
Sbjct: 112 D----------NSSEFDDYDDEEDENIVIERRKKFNV---------KPMSSEEAILQMEL 152
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
VGH+FY+FR + IVYKR++GGYG+I
Sbjct: 153 VGHNFYMFRNQDNFEINIVYKRKAGGYGLI 182
[57][TOP]
>UniRef100_A9AY42 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Herpetosiphon aurantiacus ATCC 23779
RepID=A9AY42_HERA2
Length = 186
Score = 77.4 bits (189), Expect = 1e-12
Identities = 45/145 (31%), Positives = 78/145 (53%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ + LYAA++ V D ++ ++++ KEK RG AG +
Sbjct: 66 ILRAEERDRELYAAVEAVHDNLQRQIRRFKEKHYRRGKLRRTAGE------------IIA 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ D E+ +RQ ++R+K V L P+ +EAI+ +E +GHSF+VF
Sbjct: 114 APLPALPEDAEQAEERQ-----------IIRAKEVTLR-PMFSDEAIEQMELLGHSFFVF 161
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
R+ T+ +Q+VY+R G YG+I+P+
Sbjct: 162 RDAETEKIQVVYRRNDGNYGLIMPR 186
[58][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 77.4 bits (189), Expect = 1e-12
Identities = 51/142 (35%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +LQ+ K++ G D Q +
Sbjct: 65 VIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHG------------HHSDLQAEPEV 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ + + + LQ + AEL PA V+R K + P++VEEAI LE + H FYVF
Sbjct: 113 MPL------QGDMLQGRHAEL----PAPVVRRKYFAMP-PMSVEEAIHQLEVIDHDFYVF 161
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R +Q+VY+R GGYGVI
Sbjct: 162 RNADNGELQVVYQRNHGGYGVI 183
[59][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 77.4 bits (189), Expect = 1e-12
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK +S A E + E
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKISRQLRKYKEK-VSNHKPQSSAKLPEVLPE 115
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
++ E L + D++ +L P V+R K + +++EEA LE
Sbjct: 116 KEVSEDL--------IGDRQAEL-----------PPEVIRMKYFAMPS-MSIEEAKHQLE 155
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
V H FY+FR T+ + ++Y R GG+G+I P+
Sbjct: 156 LVDHDFYMFRNQETEEINVIYMRNHGGFGIIQPR 189
[60][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 77.4 bits (189), Expect = 1e-12
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
T+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ +
Sbjct: 59 TVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTH----------ST 106
Query: 180 EDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDAL 356
E ++E +D L D+ +L PA V+R K + P+T+EEA+ L
Sbjct: 107 VKTSEVVQEKPLDDNLIGDRTPEL-----------PAEVVRMKYFAMP-PMTIEEALTQL 154
Query: 357 EAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+ V H F++F T+ + ++Y+R GG+GVI P+
Sbjct: 155 QLVDHDFFMFCNKDTNEINVIYQRNHGGFGVIQPR 189
[61][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 77.0 bits (188), Expect = 1e-12
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
TIY NG V+R +++ NLYA+IDLV DKI +L+K KEK S + + VD
Sbjct: 59 TIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRQS------KVNKTKTVDL 110
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ Q ++ + D Q AEL P+ V+R+K + +TVEEA++ L+
Sbjct: 111 IESQPVVENLIGDRQ------------AEL----PSEVVRTKYFPMPS-MTVEEALEQLQ 153
Query: 360 AVGHSFYVFREMTTDTVQIVYKR-ESGGYGVIVPQ 461
+ H FY+F T + ++YKR GGYG+I P+
Sbjct: 154 LIDHDFYMFSNGVTGEINVIYKRYHHGGYGLIQPR 188
[62][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 75.1 bits (183), Expect = 5e-12
Identities = 50/148 (33%), Positives = 76/148 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L++ KE+ PG E + E
Sbjct: 65 VIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEA----VIDE 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+D L D +E A L P+ +R K + P++VE+A L+ + H FY+F
Sbjct: 121 APIDGSLLDGKE------AHL----PSPGVRRKYFAMP-PMSVEQARHQLDLIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMRD 470
RE + +Q++Y+R GGYGVI Q RD
Sbjct: 170 REQESGQLQVIYRRNHGGYGVI--QARD 195
[63][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 74.3 bits (181), Expect = 8e-12
Identities = 50/148 (33%), Positives = 76/148 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L++ KE+ PG E + E
Sbjct: 65 VIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEA----VIDE 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+D L D +E A L P+ +R K + P++VE+A L+ + H FY+F
Sbjct: 121 APIDGSLLDGKE------AHL----PSPGVRRKYFAMP-PMSVEQARYQLDLIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMRD 470
RE + +Q++Y+R GGYGVI Q RD
Sbjct: 170 REQESGQLQVIYRRNHGGYGVI--QARD 195
[64][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 74.3 bits (181), Expect = 8e-12
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAG-PKEDVDEEDFQE 194
V+R E+ NLY++IDLV +K+ KL+K KE K I + + P E+ + E
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNNQFKNKESFPSENTESRFLDE 124
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L + ++ L E ++ ++ E+N PI+ EEA L+ + H
Sbjct: 125 ALLKDGIEASL--PEPSIKNKYFEMN-----------------PISSEEARKQLDLIDHD 165
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FYVFR + +Q++YKR GGYG+I
Sbjct: 166 FYVFRNKKNNQLQVIYKRNHGGYGLI 191
[65][TOP]
>UniRef100_A4ECY7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4ECY7_9ACTN
Length = 194
Score = 74.3 bits (181), Expect = 8e-12
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR---GAWPGRAGPKEDVDEEDF 188
R V+RV + ++YAAIDL DK+ +L+K K K + GA P E V++
Sbjct: 63 RGSVIRVAEHGADMYAAIDLSADKVTRQLRKFKTKVVDNRQGGASAADVAPVERVED--- 119
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
D L ++++ L ++R K V+ P+T E+A+ + +G
Sbjct: 120 -------LADLLLPEEDDDL--------------LVREK-VIDVTPMTEEQALVQTDLLG 157
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
H FYVF TT + +VY R++GGYG+I P++
Sbjct: 158 HDFYVFENATTGLINVVYHRKNGGYGIIKPRI 189
[66][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 73.9 bits (180), Expect = 1e-11
Identities = 50/152 (32%), Positives = 80/152 (52%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+RN VVRV + +++YAAID DK+ +L+K K K + R R K + QE
Sbjct: 63 VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER-----RHHMKSERGIALTQE 117
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L + ++ D ++QL +R K V L +P+T EEA+ + +GH
Sbjct: 118 DLANL-IEIPAEDLDDQL---------------VREKYVDL-EPMTEEEALVQTDLLGHD 160
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQMRD 470
FYVF +T ++Y R++GGYG+I P++ +
Sbjct: 161 FYVFVNSSTGLTNVIYHRKNGGYGIIKPKIEE 192
[67][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 73.9 bits (180), Expect = 1e-11
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS---RGAWPGRAGPKEDVDEEDF 188
R V+RV + ++YAAIDL DK+ +L+K K + + +G P E V D
Sbjct: 63 RGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPV--ADL 120
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
+ L + D QL +R K + L P+T E+A+ + +G
Sbjct: 121 ADLLIPEEEDDQL----------------------VRVKEIELT-PMTEEQALVQTDLLG 157
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
H FYVF TT + +VY R++GGYG+I P++
Sbjct: 158 HDFYVFENSTTGLINVVYHRKNGGYGIIKPKL 189
[68][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 73.6 bits (179), Expect = 1e-11
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NGVV R ++ NLYA+ID+V K+ +L++ K++ + AG +V ++ Q
Sbjct: 62 NGVVIRAQERSENLYASIDMVAGKLSRQLRRYKDRLSNHHG----AGSPANVGDDTEQPS 117
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
L+ V + + D+E L P +R K + +++++A+ LE + H F
Sbjct: 118 LEGVLPNDLIGDREPAL-----------PVPAVRRKYFSMP-AMSLDQALHQLELIDHDF 165
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQ 461
YVFRE ++ +Q+VY+R GG+GVI P+
Sbjct: 166 YVFREESSGGLQVVYRRNHGGFGVIQPK 193
[69][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YF17_DICT6
Length = 179
Score = 73.2 bits (178), Expect = 2e-11
Identities = 44/143 (30%), Positives = 76/143 (53%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+++ +A + +IDLV DK+ +L+++KEK + +G RA E ++E
Sbjct: 65 IIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGR---RA------------ESIRE 109
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ L +KE + + Q ++ R L P+ VEEAI +E +GH F++F
Sbjct: 110 I-----LAEKEVEEKPQVVKVKRF------------LLKPMDVEEAILQMELLGHDFFIF 152
Query: 387 REMTTDTVQIVYKRESGGYGVIV 455
R+ TD + +VYKR+ G YG+I+
Sbjct: 153 RDAETDRIGVVYKRKDGKYGLII 175
[70][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 73.2 bits (178), Expect = 2e-11
Identities = 46/147 (31%), Positives = 81/147 (55%)
Frame = +3
Query: 21 NGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYL 200
N ++R ED ++YAAIDLV DK+ +++K K K R G +D ++ + L
Sbjct: 61 NLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKI-------NRRGRAKDGGIGEYFKTL 113
Query: 201 KEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFY 380
+ + + +++++E AEL ++R+K L P+ EEAI ++ +GH+F+
Sbjct: 114 EGPEAEAPVYEEDE------AELE------LVRTKRFTLK-PMDTEEAILQMDMLGHTFF 160
Query: 381 VFREMTTDTVQIVYKRESGGYGVIVPQ 461
VF + T +VY+R+ G YG+I P+
Sbjct: 161 VFSDAETGNTNVVYRRKDGRYGLIEPE 187
[71][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 73.2 bits (178), Expect = 2e-11
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ +NLYA+IDLV K+ +L + KE+ R P + DEE L
Sbjct: 65 VIRAQEHSDNLYASIDLVASKLTRQLNRYKERVHERHQGPVHRSAR---DEEAGAASLPP 121
Query: 207 VKMDTQLFD-KEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
+ L D KE +L P+ +R K + P++++EA+ LE + H FYV
Sbjct: 122 P--GSSLTDGKEPEL-----------PSRGVRRKYFAMP-PMSLDEALHQLELIDHDFYV 167
Query: 384 FREMTTDTVQIVYKRESGGYGVIVPQ 461
FRE + +Q+VY R GG+GVI P+
Sbjct: 168 FREAESGQIQVVYHRNHGGFGVIQPK 193
[72][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 73.2 bits (178), Expect = 2e-11
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 179
TIY NG V+R +++ NLYA+IDLV DKI +L+K K+K + P + E V+
Sbjct: 59 TIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKFKDKRQGKHLHPPKLA--EVVEN 114
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
+ E L + D++ +L P V+R+K + P+ +++A++ L+
Sbjct: 115 QPVIEDL--------IGDRQPEL-----------PPEVVRTKYFAM-PPMNLQDALEQLQ 154
Query: 360 AVGHSFYVFREMTTDTVQIVYKR-ESGGYGVIVPQ 461
V H FYVF T + ++YKR GGYG+I P+
Sbjct: 155 LVDHDFYVFCNADTGELNVIYKRVNHGGYGLIQPR 189
[73][TOP]
>UniRef100_B9MLV8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Anaerocellum thermophilum DSM 6725
RepID=B9MLV8_ANATD
Length = 181
Score = 72.8 bits (177), Expect = 2e-11
Identities = 44/145 (30%), Positives = 76/145 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ N++Y+AIDLV D + +++K K K R D E +
Sbjct: 60 ILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAK-----------DAESLRY---- 104
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
M +L + E+++Q + +E + ++K + P++VEEAI + +GH+F+VF
Sbjct: 105 --MTFELEEPEKEVQEENSEFR------IAKTKRFPIK-PMSVEEAILQMNLLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
TD V +VY+R G YG+I P+
Sbjct: 156 LNQDTDKVNVVYRRNDGAYGLIEPE 180
[74][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 72.4 bits (176), Expect = 3e-11
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAGPKEDVDEEDFQEY 197
++R E+ NLY++IDLV +K+ KL+K KE K + + ++E D
Sbjct: 65 IIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHNKKLHNNLVKNKNSYSNAIEESD---- 120
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
+D +F++E +++ + + Y + PI++EEA L+ + H F
Sbjct: 121 ----SIDKDIFNEEREVRLPEPSIKKKYFEMI----------PISLEEARKQLDFIDHDF 166
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
Y+FR + +Q++YKR GGYG+I
Sbjct: 167 YLFRNKLNNELQVIYKRNHGGYGLI 191
[75][TOP]
>UniRef100_C5VNV1 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum D
str. 1873 RepID=C5VNV1_CLOBO
Length = 178
Score = 72.4 bits (176), Expect = 3e-11
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ-- 191
NGV+ R E+A N++YAAIDLV +K+ +++K K K R + D FQ
Sbjct: 57 NGVILRAEEANNDMYAAIDLVLEKLERQIRKQKTKLEKR----------KHGDALKFQFI 106
Query: 192 -EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
EY+ + D E+ ++ + + + P++ EEA+ +E +G
Sbjct: 107 PEYIPK--------DAEDNVESKIVKTKKF------------AVKPMSNEEAVLQMELLG 146
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
H+F+VFR TD V ++YKR+ G YG+I P+
Sbjct: 147 HNFFVFRNSDTDEVNVLYKRKDGQYGLIEPE 177
[76][TOP]
>UniRef100_C5NVZ2 Ribosome-associated factor Y n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NVZ2_9BACL
Length = 181
Score = 72.4 bits (176), Expect = 3e-11
Identities = 44/146 (30%), Positives = 74/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
LR +R E+ +LYAA+DLV DK+ +++K K K +G G
Sbjct: 60 LRGVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGREKG--------------- 104
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ +E+ + ++L + EE +L ++ V +P+T EEA+ +E +GH
Sbjct: 105 FAEEIILTSELEEAEETT----LDLGKVKQLKV---------EPMTREEAVFQMELLGHD 151
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+ F + TT+ + +VYKR GYGV+
Sbjct: 152 FFAFLDNTTNEISVVYKRRDTGYGVL 177
[77][TOP]
>UniRef100_UPI0001694CB6 ribosomal subunit interface protein n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694CB6
Length = 182
Score = 72.0 bits (175), Expect = 4e-11
Identities = 49/148 (33%), Positives = 75/148 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+ ++R E +++YA+IDLV DK+ +++K K K R + G K D+
Sbjct: 58 ISGALLRAEVKNDDMYASIDLVVDKLERQIRKYKTKMNRRIR---QEGGKRDL------- 107
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++ E ++EE ++R+K L P+ VEEAI + VGH+
Sbjct: 108 FVMEPSSVANTVEEEEY--------------ELVRTKRFTLK-PMDVEEAILQMNMVGHN 152
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVP 458
F+VF M TD V +VYKRE G YG+I P
Sbjct: 153 FFVFANMDTDQVNVVYKREDGRYGLIEP 180
[78][TOP]
>UniRef100_B8E0U8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0U8_DICTD
Length = 179
Score = 72.0 bits (175), Expect = 4e-11
Identities = 40/145 (27%), Positives = 74/145 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+++ +A + +++DLV DK+ A+L+K+KEK + +G
Sbjct: 65 IIKASEANQDFRSSVDLVVDKLEAQLKKLKEKLVDKGR---------------------- 102
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ E ++ E + V++ K +L P+ +EEAI +E +GH F++F
Sbjct: 103 ---------RTESIRGILIEETKEEKPEVVKVKRFLLK-PMDLEEAILQMELLGHDFFIF 152
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
R+ TD +++VYKR+ G YG+IV +
Sbjct: 153 RDAETDKIEVVYKRKDGKYGLIVSE 177
[79][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 72.0 bits (175), Expect = 4e-11
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK--EDVDEEDF 188
++ +VR E N++YA+IDLV + I +L+K K K P EDV ED
Sbjct: 56 MKGNIVRAEQVSNDMYASIDLVEEVIERQLKKYKSKLKDMNQSAANFNPSFFEDVLNEDS 115
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
D+E+ N+ R K + P+ EEA +E +G
Sbjct: 116 --------------DEED--------------INITRVKRFAMK-PMDAEEACVQMELLG 146
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
H+FYVFR TD V +VYKR+ YG+I P+
Sbjct: 147 HNFYVFRNAETDEVNVVYKRKGNSYGLIEPE 177
[80][TOP]
>UniRef100_C4FCG3 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
DSM 13280 RepID=C4FCG3_9ACTN
Length = 194
Score = 72.0 bits (175), Expect = 4e-11
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS---RGAWPGRAGPKEDVDEEDF 188
R V+RV + ++YAAIDL +K+ +L+K K + + +G P E V D
Sbjct: 63 RGSVIRVAEHGADMYAAIDLAAEKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPV--ADL 120
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
+ L D QL +R K V L P+T EEA+ + +G
Sbjct: 121 ADLLLPEDEDDQL----------------------VRVKEVELT-PMTDEEALVQTDLIG 157
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
H FYVF T V +VY R++GGYG+I P++
Sbjct: 158 HDFYVFENSVTGLVNVVYHRKNGGYGIIKPKI 189
[81][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 71.6 bits (174), Expect = 6e-11
Identities = 44/141 (31%), Positives = 74/141 (52%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+RVE+ ++NLY AIDLVCDK+ ++ K K+K +R PG + + EE QE EV
Sbjct: 70 IRVEEEQDNLYPAIDLVCDKLSRQIIKYKDKFKTRV--PGNFSIRYEGIEELAQELDYEV 127
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
+ + ++ ++ + P+++EEAI + H FY+F+
Sbjct: 128 EEPEVVIERRKKFNLK----------------------PMSIEEAILQMNLTDHDFYMFK 165
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ + + +VYKR+ GGYG+I
Sbjct: 166 DRESFEICLVYKRKEGGYGLI 186
[82][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 71.2 bits (173), Expect = 7e-11
Identities = 40/142 (28%), Positives = 75/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV +K+ +L++ KE+ PG EE L++
Sbjct: 65 VIRAQERSQNLYASIDLVSNKLCRQLRRYKERHSDHHHSPGHRASITPTTEE----VLED 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
++ L + +E + + +P + P+ +E+A L+ + H FY+F
Sbjct: 121 KSINGSLVEGKEAKLPKPGIRRKYFPMH-----------PMNIEQAQHQLDLIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+E ++ +Q++Y+R++GGYGVI
Sbjct: 170 KEAESEQLQVIYRRKNGGYGVI 191
[83][TOP]
>UniRef100_B7A6F1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermus
aquaticus Y51MC23 RepID=B7A6F1_THEAQ
Length = 186
Score = 71.2 bits (173), Expect = 7e-11
Identities = 45/148 (30%), Positives = 76/148 (51%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L G++RVE+ + +LYAAID + D++ +L++ KE+ + P +V +
Sbjct: 62 LPGGLLRVEEEDQDLYAAIDRMVDRLEIQLKRYKERRFVGRRHTYQGPPPPEVRD----- 116
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
M+ +EE+ R ++R K + P+ EEA+ +EA+GH
Sbjct: 117 ------MEALRKPEEEEGPR------------IVRVKRFEMK-PMDPEEAVFQMEALGHD 157
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVP 458
F+VFR TD + +VY+R+ G YG+I P
Sbjct: 158 FFVFRNAKTDEINVVYRRKDGNYGLIEP 185
[84][TOP]
>UniRef100_C4L5L1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sp. AT1b RepID=C4L5L1_EXISA
Length = 187
Score = 70.9 bits (172), Expect = 9e-11
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Frame = +3
Query: 21 NGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYL 200
N ++R ED ++YAAIDLV DK+ +++K K K +G G+ G EY
Sbjct: 61 NLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGR--GKEG--------GVGEYF 110
Query: 201 KEVKM--DTQ-LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
K ++ DT ++D++E AEL ++R+K L P+ EEAI ++ +GH
Sbjct: 111 KSLEGPDDTPAVYDEDE------AELE------LVRTKRFTLK-PMDTEEAILQMDMLGH 157
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
SF+VF + T +VY+R+ G YG+I P+
Sbjct: 158 SFFVFSDAETGNTNVVYRRKDGKYGLIEPE 187
[85][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 70.9 bits (172), Expect = 9e-11
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAG-PKEDVDEEDFQE 194
V+R E+ NLY++IDLV +K+ KL+K KE K + + P D + E
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKIFHNNQFKNKESFPIADTESRFLDE 124
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L + ++ L E ++ ++ E+N PI+ EEA L+ + H
Sbjct: 125 ALLKDGIEASL--PEPSIKNKYFEMN-----------------PISSEEARKQLDLIDHD 165
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FYVFR + +Q++YKR GGYG+I
Sbjct: 166 FYVFRNSKNNELQVIYKRNHGGYGLI 191
[86][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 70.5 bits (171), Expect = 1e-10
Identities = 46/142 (32%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV +K+ +L+K KE+ S ++ + V ED Q +
Sbjct: 65 VIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHHNQS--TKSVQNEDTQNFSSS 122
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
T+ KE L P+ +R K + P+ +E+A L+ + H FY+F
Sbjct: 123 DHSLTE--GKEPHL-----------PSPGVRRKYFEMT-PMNIEQARVQLDLIDHDFYLF 168
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
RE ++++YKR GGYGVI
Sbjct: 169 REEEGSALRVIYKRNHGGYGVI 190
[87][TOP]
>UniRef100_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Roseiflexus castenholzii DSM 13941
RepID=A7NNI5_ROSCS
Length = 198
Score = 70.5 bits (171), Expect = 1e-10
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+VR E LYAAID V D ++ ++++ K+K RG + G E L E
Sbjct: 71 LVRAERRAPELYAAIDEVYDTLQRQIERYKDKHWRRGRLRRQGG--------QIVEALPE 122
Query: 207 VKMDTQL-FDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
+ D+EEQ R ++R+K + P+ +EA++ +E +GHSF++
Sbjct: 123 MNAAAPAPIDEEEQRPR------------IVRTKEFQVK-PMYSDEAVEQMELLGHSFFI 169
Query: 384 FREMTTDTVQIVYKRESGGYGVIVPQMRD 470
F++ T + ++Y+R+ G YG+IVP++ D
Sbjct: 170 FQDADTGKLNVLYRRQDGNYGLIVPEVTD 198
[88][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 70.5 bits (171), Expect = 1e-10
Identities = 43/142 (30%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L++ K++ G + E + E
Sbjct: 65 VIRAQERSENLYASIDLVASKLARQLRRFKDRHSDHHHSHGHRASETPTTESVLDD---E 121
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+++ L KE QL P+ +R K + P+T+E+A L+ + H FY+F
Sbjct: 122 AIVESLLDGKEVQL-----------PSPGVRRKYFSMP-PMTLEQARQQLDLIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ + +Q++Y+R GGYGVI
Sbjct: 170 RDSASGDLQVIYRRNHGGYGVI 191
[89][TOP]
>UniRef100_C1XVX9 SSU ribosomal protein S30P; sigma 54 modulation protein n=1
Tax=Meiothermus silvanus DSM 9946 RepID=C1XVX9_9DEIN
Length = 184
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/148 (28%), Positives = 75/148 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L G+VRVE+++ ++YAAID + D++ +L++ KE+ FQE
Sbjct: 64 LPKGLVRVEESDADMYAAIDRMVDRLEVQLKRYKER--------------------HFQE 103
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
Y V + + E + + ++R+K + P++ E+A +EA+GH
Sbjct: 104 YRNHVPVMAGIPTPPESETEEGPQ--------IVRTKRFAMK-PMSPEDAAFEMEALGHD 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVP 458
F+VFR T+ + ++Y+R G YG+I P
Sbjct: 155 FFVFRNAETEDINVIYRRRDGNYGLIEP 182
[90][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 70.1 bits (170), Expect = 2e-10
Identities = 46/142 (32%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ NLY++IDLV +K+ KL+K KE+ +++ E
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNY----------INQFKNNESFPI 114
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D+ + DK Q + A L P +++K + +PI+ EEA L+ + H FYVF
Sbjct: 115 ESADSNVLDKTLFKQGREASL----PEPSIKNKYFEM-NPISSEEARKQLDLIDHDFYVF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R + +Q++YKR GGYG+I
Sbjct: 170 RNKKNNELQVIYKRNHGGYGLI 191
[91][TOP]
>UniRef100_B8GDB0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Chloroflexus aggregans DSM 9485 RepID=B8GDB0_CHLAD
Length = 197
Score = 70.1 bits (170), Expect = 2e-10
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG----PKEDVDEEDFQE 194
++R E+ +LYAAID V + ++ ++Q+ K+K R RA P E+V + +
Sbjct: 66 ILRAEERAADLYAAIDAVQEVLQRQIQRYKDKYWRRSRELRRATNGLTPAEEVAIAEAET 125
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++T+ A V+R+KT L P+ V++AI+ +E +GH+
Sbjct: 126 EAMTAPVETEPV------------------AKVIRTKTFRLR-PMFVDDAIEQMELLGHT 166
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
F+VF++ T + ++Y+R G YGVIVP++
Sbjct: 167 FFVFQDAETMQISVLYRRRDGNYGVIVPEV 196
[92][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 70.1 bits (170), Expect = 2e-10
Identities = 48/148 (32%), Positives = 75/148 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L+K KE+ G + EE E + E
Sbjct: 65 VIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLTPSTEEVSDESVVE 124
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ + KE QL P +R K + P+T+++A L+ + H FY+F
Sbjct: 125 GSL---VDGKEAQL-----------PEPGVRRKYFSMP-PMTLDDARHQLDVIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMRD 470
++ T +Q++Y+R GGYGVI Q RD
Sbjct: 170 KDSATGALQVIYRRNHGGYGVI--QARD 195
[93][TOP]
>UniRef100_C2KX79 Ribosome-associated inhibitor A n=1 Tax=Oribacterium sinus F0268
RepID=C2KX79_9FIRM
Length = 176
Score = 70.1 bits (170), Expect = 2e-10
Identities = 44/149 (29%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ V+R E+A ++Y +IDLV D + +++K K K I R + +
Sbjct: 56 VKGSVIRAEEATPDMYQSIDLVVDVLERQIRKYKNKLIQR--------------HQAASD 101
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ E + D+EE ++R+K + L P+T EEA +E +GHS
Sbjct: 102 FSSEFIEEKPAQDEEE--------------IKIVRTKHIDLK-PMTAEEACLQMELLGHS 146
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VF++ T V +VYKR++ YG+I P+
Sbjct: 147 FFVFQDGNTGKVNVVYKRKANSYGLIEPE 175
[94][TOP]
>UniRef100_C7ML59 Ribosomal subunit interface protein n=1 Tax=Cryptobacterium curtum
DSM 15641 RepID=C7ML59_CRYCD
Length = 188
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/147 (27%), Positives = 74/147 (50%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++RVE+ E ++YAAID+ K+ +L+K K + + R A +
Sbjct: 61 TAKGHIIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAASIRS-------- 112
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
K K+D A + + V+R K++ L P+T EEA+ ++ +GH
Sbjct: 113 --AKSAKLDLD------------ALMEELSDDEVVREKSIDL-QPLTEEEALVEIDLLGH 157
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVI 452
F+ + + T+ +I+Y+R +GGYG++
Sbjct: 158 DFFAYTDRDTNEFRILYRRRNGGYGLL 184
[95][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 69.7 bits (169), Expect = 2e-10
Identities = 44/142 (30%), Positives = 71/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L++ K++ G + E E
Sbjct: 65 VIRAQERSENLYASIDLVASKLARQLRRYKDRHSDHHHSHGHKASETPTTEAVLDN---E 121
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+++ L KE QL P+ +R K + P+T+E+A L+ + H FYVF
Sbjct: 122 AVVESLLDGKEVQL-----------PSPGVRRKYFAMP-PMTLEQARQQLDLIDHDFYVF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ + +Q++Y R GGYGVI
Sbjct: 170 RDSDSGELQVIYHRNHGGYGVI 191
[96][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 69.3 bits (168), Expect = 3e-10
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV +K+ +L+K KE+ S ++ + V E + +
Sbjct: 65 VIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHNNQS--TKSVQNEKIENFSSS 122
Query: 207 VKMDTQLFDKEEQ------LQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
D L + +E ++R++ E+ DP+T+E+A L+ +
Sbjct: 123 ---DHSLIEGKEPHLPNPGVRRKYFEM-----------------DPMTIEQARVQLDLID 162
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVI 452
H FY+FRE ++++Y+R GGYGVI
Sbjct: 163 HDFYLFREEEGSALRVIYRRNHGGYGVI 190
[97][TOP]
>UniRef100_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446 RepID=C8WT44_ALIAC
Length = 180
Score = 69.3 bits (168), Expect = 3e-10
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NGV+ R E+ ++YA+IDL DK+ ++ + KEK R G + D + E
Sbjct: 59 NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAET 118
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
E+K V+R K + P+ VEEA+ +E +GH F
Sbjct: 119 DDEIK--------------------------VVRVKRFPIK-PMDVEEAVLQMELLGHDF 151
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQM 464
+VF T+ V +VY+R SG YG+I PQ+
Sbjct: 152 FVFMNAETEEVNVVYRRRSGDYGLIEPQI 180
[98][TOP]
>UniRef100_B7DUH5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius LAA1
RepID=B7DUH5_9BACL
Length = 180
Score = 69.3 bits (168), Expect = 3e-10
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NGV+ R E+ ++YA+IDL DK+ ++ + KEK R G + D + E
Sbjct: 59 NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDAVAET 118
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
E+K V+R K + P+ VEEA+ +E +GH F
Sbjct: 119 DDEIK--------------------------VVRVKRFPIK-PMDVEEAVLQMELLGHDF 151
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQM 464
+VF T+ V +VY+R SG YG+I PQ+
Sbjct: 152 FVFMNAETEEVNVVYRRRSGDYGLIEPQI 180
[99][TOP]
>UniRef100_B7CAG7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
3989 RepID=B7CAG7_9FIRM
Length = 177
Score = 69.3 bits (168), Expect = 3e-10
Identities = 41/145 (28%), Positives = 77/145 (53%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
R ++R E +++LYAAIDL DK+ ++++ K + + +E
Sbjct: 59 RYAILRAEVVDDDLYAAIDLAVDKLEDQIRRTKTRLTRKN-----------------KES 101
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
L E +D +LF+ EE + V+R+K++V + ++++EAI +E +GH F
Sbjct: 102 LAEAFLDHELFNDEE-----------VDDDEVVRTKSIVPKE-MSLDEAIMKMELLGHDF 149
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
+++ + T+ + + YKR GGYG+I
Sbjct: 150 FIYTDDETNKIAVCYKRHDGGYGLI 174
[100][TOP]
>UniRef100_UPI0001B5A5D6 ribosomal subunit interface protein n=1 Tax=Staphylococcus aureus
subsp. aureus str. CF-Marseille RepID=UPI0001B5A5D6
Length = 163
Score = 68.9 bits (167), Expect = 4e-10
Identities = 46/146 (31%), Positives = 79/146 (54%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R + R ++V + QE
Sbjct: 33 LKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INRKS---RDRGDQEVFVAELQE 88
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E ++D +D E ++RSK L P+ EEA+ + +GH
Sbjct: 89 -MQETQVDNDAYDDNE--------------IEIIRSKEFSLK-PMDSEEAVLQMNLLGHD 132
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+VF + TD IVY+R+ G YG+I
Sbjct: 133 FFVFTDRETDGTSIVYRRKDGKYGLI 158
[101][TOP]
>UniRef100_Q5SIS0 Ribosomal subunit interface protein n=2 Tax=Thermus thermophilus
RepID=Q5SIS0_THET8
Length = 186
Score = 68.9 bits (167), Expect = 4e-10
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI--SRGAWPGRAGPKEDVDEEDF 188
L G+VRVE+ + +LYAAID D++ ++++ +E+ R ++ G P
Sbjct: 62 LPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQGPPPP--------- 112
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
EV+ L EE+ + + R P+ EEA +EA+G
Sbjct: 113 -----EVRDLEALRKPEEEEGPRIVRVKRFE------------MKPMDPEEAAFQMEALG 155
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
HSF+VFR TD + ++Y+R+ G YG+I P
Sbjct: 156 HSFFVFRNAKTDEINVIYRRKDGNYGLIEP 185
[102][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 68.9 bits (167), Expect = 4e-10
Identities = 46/142 (32%), Positives = 71/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L+K KE+ G + EE E E
Sbjct: 65 VIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLTPSTEEVSDESAVE 124
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ + KE QL P +R K + P+T+++A L+ + H FY+F
Sbjct: 125 GSL---VDGKEAQL-----------PEPGVRRKYFSMP-PMTLDDARHQLDVIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ T +Q++Y+R GGYGVI
Sbjct: 170 RDSKTGDLQVIYRRNHGGYGVI 191
[103][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 68.9 bits (167), Expect = 4e-10
Identities = 46/146 (31%), Positives = 71/146 (48%)
Frame = +3
Query: 21 NGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYL 200
NG++R E+ ++YAAID D + +L+K K K + A P Q L
Sbjct: 64 NGIIRAEEHHADMYAAIDRASDVLERQLRKFKTKYLRHRQ---EAAPPP-------QPGL 113
Query: 201 KEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFY 380
E ++ L D E + ++R+K L P++ E+A+ +EA+GH FY
Sbjct: 114 AEADVNAGLDDTE-------------FRPEIVRTKRFDLR-PMSPEDAVTQMEALGHDFY 159
Query: 381 VFREMTTDTVQIVYKRESGGYGVIVP 458
VF+ M T +VY+R G YG+I P
Sbjct: 160 VFKNMDTGGCAVVYRRRDGHYGLIEP 185
[104][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 68.9 bits (167), Expect = 4e-10
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ--EYL 200
V+R E+ NLY++IDLV +K+ KL+K KE+ + + + F+ + L
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERN------------NKTIHNKQFKNKDSL 112
Query: 201 KEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFY 380
M++ DK ++ A L P +++K + PI+ +EA L+ + H FY
Sbjct: 113 PIESMESNFLDKAFFIEGTEASL----PKPSIKNKYFEMT-PISSDEARKQLDLIDHDFY 167
Query: 381 VFREMTTDTVQIVYKRESGGYGVI 452
VFR + +Q++YKR GGYG+I
Sbjct: 168 VFRNKKNNELQVIYKRNHGGYGLI 191
[105][TOP]
>UniRef100_C0WUJ7 Ribosome-associated inhibitor protein Y n=3 Tax=Lactobacillus
RepID=C0WUJ7_LACBU
Length = 194
Score = 68.9 bits (167), Expect = 4e-10
Identities = 44/141 (31%), Positives = 73/141 (51%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R E+ N+LYA++DLV DK+ +++K K K + E+ F+ L+ V
Sbjct: 72 LRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSR------------EKGFKN-LEFV 118
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
D Q + Q QF +V+R+K + L P+ EEAI ++ +GH F+++
Sbjct: 119 PNDDQTTSDSDDNQSQF---------DVVRTKRLALK-PMDNEEAILQMDMLGHDFFIYE 168
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ T + IVY+R G YG+I
Sbjct: 169 DADTSNIDIVYRRNDGRYGLI 189
[106][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 68.9 bits (167), Expect = 4e-10
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP----GRAGPKEDVDEE 182
+RN VVRV + +++Y AID +K+ +L+K K + + + GRA +E++
Sbjct: 63 VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQEELAN- 121
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
++T D ++QL +R K + L P+T EEA+ +
Sbjct: 122 ---------LIETPAEDLDDQL---------------VREKYIDLL-PMTEEEALVQTDL 156
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMRD 470
+GH FYVF TT ++Y R++GGYG+I P++ +
Sbjct: 157 LGHDFYVFVNSTTGLTNVIYHRKNGGYGIIKPRIEE 192
[107][TOP]
>UniRef100_Q2YSH7 Uncharacterized protein SAB0704 n=35 Tax=Staphylococcus aureus
RepID=Y704_STAAB
Length = 190
Score = 68.9 bits (167), Expect = 4e-10
Identities = 46/146 (31%), Positives = 79/146 (54%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R + R ++V + QE
Sbjct: 60 LKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INRKS---RDRGDQEVFVAELQE 115
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E ++D +D E ++RSK L P+ EEA+ + +GH
Sbjct: 116 -MQETQVDNDAYDDNE--------------IEIIRSKEFSLK-PMDSEEAVLQMNLLGHD 159
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+VF + TD IVY+R+ G YG+I
Sbjct: 160 FFVFTDRETDGTSIVYRRKDGKYGLI 185
[108][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 68.6 bits (166), Expect = 5e-10
Identities = 44/148 (29%), Positives = 72/148 (48%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV +K+ +L++ KE+ G E L +
Sbjct: 65 VIRAQERSENLYASIDLVANKLSRQLRRYKERHSDHHHSHGHRASTTPTTEA----VLDD 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+D L D +E + +P P++VEEA L+ + H F++F
Sbjct: 121 SAVDGSLLDGKEAHLPDPGVRRKYFPM-----------PPMSVEEARHQLDLIDHDFFLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMRD 470
R+ ++ +Q++Y+R GGYGVI Q RD
Sbjct: 170 RDASSKELQVIYRRNHGGYGVI--QARD 195
[109][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 68.6 bits (166), Expect = 5e-10
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI----SRGAWPGRAGPKEDVDEEDFQE 194
V+R ++ NLYA+IDLV K+ +L++ KE+ S G P + + +
Sbjct: 65 VIRAQERSENLYASIDLVASKLCRQLRRFKERHSDHHHSNGHRASETPPTDAIADA---- 120
Query: 195 YLKEVKMDTQLFD-KEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+D L D KE QL P +R K + P+++EEA L+ + H
Sbjct: 121 ----APIDGSLLDGKEVQL-----------PDPGVRRKYFAMP-PMSLEEARHQLDVIDH 164
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVI 452
FY+FR+ +T +Q++Y+R GGYGVI
Sbjct: 165 DFYLFRDASTGDLQVIYRRNHGGYGVI 191
[110][TOP]
>UniRef100_UPI00016C5D7E putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-37x79 RepID=UPI00016C5D7E
Length = 117
Score = 68.2 bits (165), Expect = 6e-10
Identities = 41/135 (30%), Positives = 71/135 (52%)
Frame = +3
Query: 48 ENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 227
+ NLY AID+V DK+ +L+K K++ + +D FQ+ + L
Sbjct: 2 QENLYTAIDVVYDKLSKQLKKYKKRLQDK---------HKDNKSIRFQD------SEINL 46
Query: 228 FDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDT 407
D++E + EL V++ + P++ EEA+ +E +GH FY+F+ + +D
Sbjct: 47 ADEQEDYGDENQEL-------VIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKNIDSDE 99
Query: 408 VQIVYKRESGGYGVI 452
+ +VYKR +GGYG+I
Sbjct: 100 IAVVYKRNNGGYGII 114
[111][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 68.2 bits (165), Expect = 6e-10
Identities = 44/141 (31%), Positives = 72/141 (51%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + ++E +
Sbjct: 65 LRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARK-----------------YREKVPTG 107
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
+M + F+KEE + E V+R+K + L P+ VEEAI +E +GH F+++
Sbjct: 108 EMFSTEFNKEEVEEAPAVE--------VVRTKNIELK-PMDVEEAILQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ T ++YKRE G YG+I
Sbjct: 159 DSEDHTTNVLYKREDGNYGLI 179
[112][TOP]
>UniRef100_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
RepID=Q0B0B5_SYNWW
Length = 181
Score = 68.2 bits (165), Expect = 6e-10
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI--SRGAWPGRAGPKEDVDEEDFQ 191
NG++ R E+ +++Y++ID+V +K+ +++K K + +RGA G K+ + EE +
Sbjct: 57 NGIILRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGA-----GLKKALAEEIKK 111
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
E DK E++++ V+RSK L P+ VEEAI + +GH
Sbjct: 112 E-----------LDKGEKIEK----------FKVVRSKRFALK-PMDVEEAIMQMNLLGH 149
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVP 458
SF+VF ++ V +VYKR+ G YG+I P
Sbjct: 150 SFFVFFNPQSEEVNVVYKRKDGNYGLIEP 178
[113][TOP]
>UniRef100_C5RGA6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulovorans 743B RepID=C5RGA6_CLOCL
Length = 180
Score = 68.2 bits (165), Expect = 6e-10
Identities = 41/149 (27%), Positives = 78/149 (52%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N ++R E+A ++YA+IDLV DK+ +++K K K ++ D F +
Sbjct: 56 LKNVILRGEEATESMYASIDLVIDKLEGQMRKNKTKL----------SKQKYADSLRFYD 105
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L + ++ ++E + ++++K + P+ EEA+ +E +GH+
Sbjct: 106 ALSKGELAATEVEEESK---------------IVKTKRFAIK-PMNAEEAVLQMELLGHN 149
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VF + T V +VYKR+ G +G+I P+
Sbjct: 150 FFVFMDDETSEVNVVYKRKDGNFGLIEPE 178
[114][TOP]
>UniRef100_Q5HHR8 Uncharacterized protein SACOL0815 n=1 Tax=Staphylococcus aureus
subsp. aureus COL RepID=Y815_STAAC
Length = 190
Score = 68.2 bits (165), Expect = 6e-10
Identities = 46/146 (31%), Positives = 79/146 (54%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R + R ++V + QE
Sbjct: 60 LKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INRKS---RDRGDQEVFVAELQE 115
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E ++D +D E ++RSK L P+ EEA+ + +GH
Sbjct: 116 -MQETQVDNDAYDDNE--------------IEIIRSKEFSLK-PMDSEEAVLQMNLLGHD 159
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+VF + TD IVY+R+ G YG+I
Sbjct: 160 FFVFIDRETDGTSIVYRRKDGKYGLI 185
[115][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 67.8 bits (164), Expect = 8e-10
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-PKEDVDEEDFQEYLK 203
++R E+ ++YA+IDLV +K+ +L++ K K ++R PG G +E +ED +EY
Sbjct: 60 ILRGEEVTGDMYASIDLVVEKLEKQLERYKGKLLNRR--PGAGGVTREQETQEDEEEY-- 115
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
++R+K L P+ V+EA+ + +GHSF+V
Sbjct: 116 ----------------------------RIVRTKRFALK-PMPVDEAVMQMNLLGHSFFV 146
Query: 384 FREMTTDTVQIVYKRESGGYGVIVP 458
F V ++Y+R+ G YG+I P
Sbjct: 147 FANAENQQVNVIYRRKDGHYGLIEP 171
[116][TOP]
>UniRef100_A8MJN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJN7_ALKOO
Length = 181
Score = 67.8 bits (164), Expect = 8e-10
Identities = 44/150 (29%), Positives = 74/150 (49%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
+ ++RVE+A +++Y++ID DK+ +L+K K K +R +
Sbjct: 56 INGSILRVEEATDDMYSSIDNAVDKLTRQLRKQKSKLENRNS------------------ 97
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
K T F E + E + ++R+K + P+ EEA+ +E +GH+
Sbjct: 98 -----KYKTIRF---ENIPAYEPENGNASESKIVRTKRFSIK-PMNAEEAVLQMELLGHN 148
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
FYVF + TD V +VYKR+ G YG+I P +
Sbjct: 149 FYVFLDGETDEVGVVYKRKDGNYGLIEPYL 178
[117][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 67.8 bits (164), Expect = 8e-10
Identities = 45/142 (31%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ NLY++IDLV +K+ KL+K KE+ + F+
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERN------------NKIFHNNQFKNKESF 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ DT+ +E L + E + P+ +++K + +PI+ EEA L+ + H FYVF
Sbjct: 113 LIADTESRFLDEALLKDGIEASLPEPS--IKNKYFEM-NPISSEEARKQLDLIDHDFYVF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R + +Q++YKR GGYG+I
Sbjct: 170 RNNKNNELQVIYKRNHGGYGLI 191
[118][TOP]
>UniRef100_A8RDK2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM
3991 RepID=A8RDK2_9FIRM
Length = 177
Score = 67.8 bits (164), Expect = 8e-10
Identities = 43/142 (30%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E ++LYAAIDL DK+ ++++ K + + E++D ED E
Sbjct: 62 VLRTEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAYAFIEEMDFEDSYE---- 117
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D +E ++R+KTV + D + ++EAI +E +GHSF+++
Sbjct: 118 --------DNDE----------------LVRTKTVTV-DTMELDEAIMRMEMLGHSFFIY 152
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ T+ + +VYKR GGYG++
Sbjct: 153 RDNETNEIAVVYKRHDGGYGLL 174
[119][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 67.4 bits (163), Expect = 1e-09
Identities = 46/142 (32%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDL K+ +L++ KE+ G + E
Sbjct: 65 VIRAQERSENLYASIDLAASKLARQLRRWKERHSDHHHSHGHSASTTPATEA-------- 116
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
V D+Q+ LQ + AEL P +R K + P+++EEA L+ + H FY+F
Sbjct: 117 VTDDSQV--DGSLLQGREAEL----PDPGVRRKYFAMP-PMSLEEARRQLDLIDHDFYLF 169
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ +D +Q++Y+R GGYGVI
Sbjct: 170 RDKDSDQLQVIYRRNHGGYGVI 191
[120][TOP]
>UniRef100_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Halothermothrix orenii H 168 RepID=B8CYM6_HALOH
Length = 184
Score = 67.4 bits (163), Expect = 1e-09
Identities = 46/144 (31%), Positives = 76/144 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ ++YA+ID V +K+ ++ K K K I+R E QE+ KE
Sbjct: 61 ILRGEEESQDMYASIDGVLEKLERQVHKYKTK-INRKI------------RERKQEFKKE 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K + +EE L + E + ++R+K + P++VEEA ++ +GH F+VF
Sbjct: 108 YKEER----REEILNSEEDE----FKPRIVRTKKFAIK-PMSVEEAAMQMDLLGHDFFVF 158
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
T+ V +VYKR+ G YG+I P
Sbjct: 159 TNANTEQVNVVYKRKDGNYGLIEP 182
[121][TOP]
>UniRef100_A5UVY5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Roseiflexus sp. RS-1 RepID=A5UVY5_ROSS1
Length = 193
Score = 67.4 bits (163), Expect = 1e-09
Identities = 42/146 (28%), Positives = 79/146 (54%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+VR E LYAAID V D ++ ++++ K+K RG + G E L E
Sbjct: 66 LVRAERRAPELYAAIDEVYDTLQRQIERYKDKHWRRGKLRRQGG--------QIVEALPE 117
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ + L D +E+ +R ++R+K + P+ +EA++ +E +GH+F++F
Sbjct: 118 LAAPS-LADTQEEEERP----------RIVRTKEFQVK-PMYSDEAVEQMELLGHNFFIF 165
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQM 464
++ T + ++Y+R+ G YG+IVP++
Sbjct: 166 QDADTGKLNVLYRRQDGNYGLIVPEV 191
[122][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 67.4 bits (163), Expect = 1e-09
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ--EYL 200
V+R E+ NLY++IDLV +K+ KL+K KE+ + + + F+ + L
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERN------------NKTIHNKQFKNKDSL 112
Query: 201 KEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFY 380
M++ DK + A L P +++K + PI+ +EA L+ + H FY
Sbjct: 113 PIESMESNFLDKAFFKEGTEASL----PEPSIKNKYFEMT-PISSDEARKQLDLIDHDFY 167
Query: 381 VFREMTTDTVQIVYKRESGGYGVI 452
VFR + +Q++YKR GGYG+I
Sbjct: 168 VFRNKKNNELQVIYKRNHGGYGLI 191
[123][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 67.4 bits (163), Expect = 1e-09
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ--EYL 200
V+R E+ NLY++IDLV +K+ KL+K KE+ + + + F+ + L
Sbjct: 65 VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERN------------NKTIHNKQFKNKDSL 112
Query: 201 KEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFY 380
M++ DK + A L P +++K + PI+ +EA L+ + H FY
Sbjct: 113 PIESMESNFLDKALFKEGTEASL----PEPSIKNKYFEMT-PISSDEARKQLDLIDHDFY 167
Query: 381 VFREMTTDTVQIVYKRESGGYGVI 452
VFR + +Q++YKR GGYG+I
Sbjct: 168 VFRNKKNNELQVIYKRNHGGYGLI 191
[124][TOP]
>UniRef100_C6J2M0 Ribosomal subunit interface protein n=1 Tax=Paenibacillus sp. oral
taxon 786 str. D14 RepID=C6J2M0_9BACL
Length = 183
Score = 67.4 bits (163), Expect = 1e-09
Identities = 50/142 (35%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++YA+ID V DK+ +++K K K I+R + G K + ED
Sbjct: 62 VLRAEDRSDDMYASIDAVVDKLERQIRKHKTK-INRKL--RQKGVKNSLFVED------A 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
L + EE+L+ V+R+K L P+ VEEAI + VGH+F+VF
Sbjct: 113 TTGSVALDEGEEELE-------------VVRTKRFTLK-PMDVEEAILQMNMVGHNFFVF 158
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T V +VYKR G YG+I
Sbjct: 159 SNIDTKEVNVVYKRNDGKYGLI 180
[125][TOP]
>UniRef100_C4GCR0 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles
DSM 14600 RepID=C4GCR0_9FIRM
Length = 176
Score = 67.4 bits (163), Expect = 1e-09
Identities = 43/149 (28%), Positives = 73/149 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ G+VR E +++Y +ID + I +L K + K + R + EE F E
Sbjct: 56 VKGGIVRCEKTTDDMYVSIDAASEGIEDQLTKYRHKLVDRAH---KGAVLNAAFEEGFDE 112
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
D+EE+++ ++R+K L P+ E+A +E +GHS
Sbjct: 113 ------------DEEEEIK-------------IVRTKKFDLK-PMYAEDACAQMELLGHS 146
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VF TD V +VY+R++G YG+I P+
Sbjct: 147 FFVFTNAETDAVNVVYRRKNGSYGLIEPE 175
[126][TOP]
>UniRef100_A8SVF0 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SVF0_9FIRM
Length = 175
Score = 67.4 bits (163), Expect = 1e-09
Identities = 41/149 (27%), Positives = 73/149 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E +++Y +IDLV + I ++ K ++K I D+E
Sbjct: 56 MKGHIIRAEQVSDDMYVSIDLVVEVIERQVTKHRKKLI---------------DKEQNVA 100
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
YL E +D + D ++ ++R+K + P+ E+A ++ +GH+
Sbjct: 101 YLNEAFVDEDIEDDDD--------------IKIVRTKKFAVK-PMYPEDACIQMDLLGHN 145
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVFR TD V +VYKR+ YG+I P+
Sbjct: 146 FYVFRNAETDEVNVVYKRKGNTYGLIEPE 174
[127][TOP]
>UniRef100_UPI0001789185 sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789185
Length = 188
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/142 (30%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++YA+ID V DK+ +++K K K + + G + + E+ +
Sbjct: 62 VLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIK---QEGGLKTLIAENGAAATSQ 118
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
V + +D++E V+R+K + P+ VEEAI + VGH+F+VF
Sbjct: 119 VDAEQVEYDEDEY--------------EVVRTKRFTMK-PMDVEEAILQMNMVGHNFFVF 163
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T V +VYKR+ G YG+I
Sbjct: 164 SNIDTQEVNVVYKRDDGKYGLI 185
[128][TOP]
>UniRef100_Q39W54 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Geobacter metallireducens GS-15 RepID=Q39W54_GEOMG
Length = 181
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/152 (26%), Positives = 79/152 (51%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YAAID V DKI +L++ KE+ + K VD +
Sbjct: 55 TAKGVTIKAAEETNDMYAAIDAVVDKIERQLRRYKERLKNH---------KPAVDNRALE 105
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+++ + + D++++ ++RSKT+ + P++VEEA+ ++ +
Sbjct: 106 --VQKTILTAESIDQQQE-------------PVIVRSKTITIK-PMSVEEAVMQMDLLHK 149
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQMR 467
F VF + TT+ + +VY+R+ G YG+I P +
Sbjct: 150 DFLVFTDSTTEVINVVYRRKDGNYGLIEPSRK 181
[129][TOP]
>UniRef100_Q03M66 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Streptococcus thermophilus LMD-9 RepID=Q03M66_STRTD
Length = 182
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/141 (31%), Positives = 71/141 (50%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + ++E +
Sbjct: 65 LRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARK-----------------YREKVPTG 107
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
+M + F+KEE + E V+R K + L P+ VEEAI +E +GH F+++
Sbjct: 108 EMFSTEFNKEEVEEAPAVE--------VVRIKNIELK-PMDVEEAILQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ T ++YKRE G YG+I
Sbjct: 159 DSKDHTTNVLYKREDGNYGLI 179
[130][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 67.0 bits (162), Expect = 1e-09
Identities = 44/148 (29%), Positives = 75/148 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L+K KE+ G + E +++
Sbjct: 65 VIRAQERSQNLYASIDLVATKLCRQLRKYKERHSDHHHSHGHSASLTPTTEA----VVED 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+D+ L +E A L P +R K + P++ E+A L+ + H FY+F
Sbjct: 121 KAIDSSLIQGKE------AHL----PTPGIRRKYFSMP-PMSTEQARHQLDLIDHDFYMF 169
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMRD 470
+E+ T +Q++Y+R GGYG+I + D
Sbjct: 170 KEIETQQLQVIYRRTHGGYGIIQAKDED 197
[131][TOP]
>UniRef100_A5KKP2 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
27756 RepID=A5KKP2_9FIRM
Length = 198
Score = 67.0 bits (162), Expect = 1e-09
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRG-AWPGRAGPKEDVDEEDFQ 191
++ ++R E +++Y +IDLV + I +L+K K K +++ P A P + +E
Sbjct: 69 VKGSIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQGHPTAAVPSGSIKKEF-- 126
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
++ D + D +E ++R+K + P+ E+A +E +GH
Sbjct: 127 -----IESDDESSDDDE--------------IRIVRTKKFGIK-PMFPEDACIQMELLGH 166
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
SF+VF TD V +VYKR+ G +G+I P+
Sbjct: 167 SFFVFSNAETDEVNVVYKRKDGSFGLIEPE 196
[132][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 67.0 bits (162), Expect = 1e-09
Identities = 46/146 (31%), Positives = 71/146 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N +R E+ ++LYA IDLV K+ +++K K + + G + E F
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHG--------EPEAFVA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E E + AE ++RSK L P+ EEA+ +E +GH
Sbjct: 112 EVQEAP--------PENVDDVNAEPTNDSEIEIIRSKQFSLK-PMDSEEAVLQMELLGHD 162
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FY+F + TD IVYKR+ G YG+I
Sbjct: 163 FYIFTDRETDGTSIVYKRKDGKYGLI 188
[133][TOP]
>UniRef100_A0Q2Y0 Ribosomal subunit interface protein n=1 Tax=Clostridium novyi NT
RepID=A0Q2Y0_CLONN
Length = 178
Score = 66.6 bits (161), Expect = 2e-09
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ-- 191
NGV+ R ED+ +++YAAID+V +K+ +++K K K R + D FQ
Sbjct: 57 NGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRR----------KHGDALKFQFI 106
Query: 192 -EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
EY+ + D E+ ++ + + R P++ EEA+ +E +G
Sbjct: 107 PEYVPK--------DDEDNIESKIVKTKRF------------AIKPMSREEAVLQMELLG 146
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
H+F+VF T+ V ++YKR+ G YG+I P+
Sbjct: 147 HNFFVFTNAETEEVNVLYKRKDGQYGLIEPE 177
[134][TOP]
>UniRef100_C7N4B5 Ribosomal subunit interface protein n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4B5_SLAHD
Length = 182
Score = 66.6 bits (161), Expect = 2e-09
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK-EDVDEEDFQEYLK 203
+V VE+ ++++YAAID+ K+ +L+K K + I + R G + DF +
Sbjct: 64 IVHVEERDSDMYAAIDIAAAKLTRQLRKYKTRVIEK-----RDGETIRTAADPDFDALMA 118
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
E+ D + V+R K V P+T E+A ++ +GH F+V
Sbjct: 119 ELSADDE----------------------VVRVKEVEFT-PMTEEQACVQIDLLGHDFFV 155
Query: 384 FREMTTDTVQIVYKRESGGYGVIVPQ 461
+ + T+ V ++Y+RE+GGYG++ P+
Sbjct: 156 YTDRDTNEVNVLYRRENGGYGLLKPR 181
[135][TOP]
>UniRef100_B1B8N8 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum C
str. Eklund RepID=B1B8N8_CLOBO
Length = 184
Score = 66.6 bits (161), Expect = 2e-09
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ-- 191
NGV+ R ED+ +++YAAID+V +K+ +++K K K R + D FQ
Sbjct: 63 NGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRR----------KHGDALKFQFI 112
Query: 192 -EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
EY+ + D E+ ++ + + R P++ EEA+ +E +G
Sbjct: 113 PEYVPK--------DNEDSIESKIVKTKRF------------AIKPMSKEEAVLQMELLG 152
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
H+F+VF T+ V ++YKR+ G YG+I P+
Sbjct: 153 HNFFVFTNGDTEEVNVLYKRKDGQYGLIEPE 183
[136][TOP]
>UniRef100_A6TLE5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLE5_ALKMQ
Length = 177
Score = 66.2 bits (160), Expect = 2e-09
Identities = 40/145 (27%), Positives = 73/145 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ ++YA+ID V +K+ ++L+K K K + E + E+ Y+++
Sbjct: 60 ILRAEEKTEDMYASIDGVVNKLTSQLRKHKTKM------ENKTKKYETIRFENIPTYVED 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
V D + ++++K + P+ EEA+ +E +GH+FY+F
Sbjct: 114 VDSDE---------------------SKIVKTKRFAMK-PMHSEEAVLQMELIGHNFYMF 151
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
TD V +VYKR+ G YG+I P+
Sbjct: 152 ANAETDEVNVVYKRKDGNYGLIEPE 176
[137][TOP]
>UniRef100_C6PFL3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter italicus Ab9 RepID=C6PFL3_9THEO
Length = 181
Score = 66.2 bits (160), Expect = 2e-09
Identities = 44/144 (30%), Positives = 71/144 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++Y +ID V DKI ++ K K K R G E + E Y +
Sbjct: 61 IFRAEEVSDDMYGSIDRVVDKIERQILKHKTKL------KNRFGANESIRFEIPSVYQEA 114
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
KEE+ + F ++++K + P++ EEAI + +GH+F+VF
Sbjct: 115 ---------KEEEEETSF---------EIVKTKRFPIK-PMSAEEAILQMNLLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TDT+ +VYKR+ G YG+I P
Sbjct: 156 TNADTDTINVVYKRKDGKYGLIEP 179
[138][TOP]
>UniRef100_UPI000196CE6C hypothetical protein CATMIT_02221 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196CE6C
Length = 193
Score = 65.9 bits (159), Expect = 3e-09
Identities = 45/142 (31%), Positives = 78/142 (54%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ ++LY AIDLV DK+ +++K K K +SR + + + E L+E
Sbjct: 77 LLRAEETSDDLYEAIDLVIDKLERQIRKYKTK-LSRKSKNNKLAFNINT-----LEALEE 130
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+EE + V+++KT+ P+ +EEAI +E +GHSF+V+
Sbjct: 131 --------PEEEDV--------------VVKTKTIN-PKPMDMEEAIMQMELIGHSFFVY 167
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+++ T+T +VYKR GGYG++
Sbjct: 168 KDIETNTACVVYKRRDGGYGLL 189
[139][TOP]
>UniRef100_Q74BZ2 Ribosomal subunit interface protein n=1 Tax=Geobacter
sulfurreducens RepID=Q74BZ2_GEOSL
Length = 181
Score = 65.9 bits (159), Expect = 3e-09
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YAA+D V DKI +L++ KE+
Sbjct: 55 TAKGITIKAAEETNDMYAALDAVIDKIERQLRRYKER----------------------- 91
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPAN---VMRSKTVVLADPITVEEAIDALEA 362
LKE K D+ ++Q+ I V+RSKT+ + P++VEEA+ ++
Sbjct: 92 --LKEHKPSAD--DRALEIQKSVVTAESIEQRTEPVVIRSKTISIK-PMSVEEAVMQMDL 146
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQMR 467
+ F VF + +T+ + +VY+R+ G YG+I PQ +
Sbjct: 147 LHKDFLVFTDASTEAINVVYRRKDGNYGLIEPQRK 181
[140][TOP]
>UniRef100_Q67T85 30S ribosomal protein S30AE family n=1 Tax=Symbiobacterium
thermophilum RepID=Q67T85_SYMTH
Length = 178
Score = 65.9 bits (159), Expect = 3e-09
Identities = 43/149 (28%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L ++R E+A ++YA+IDLV DK+ ++Q+ + + RG A P+ V + Q
Sbjct: 56 LNGWILRGEEATGDMYASIDLVADKLEKQVQRYRARLRRRGG--AGASPEAAVAGAEDQG 113
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+D +L K +++R +P P+TV+EAI ++ + H
Sbjct: 114 ------VDAELDGKVVKVKR--------FPVK-----------PVTVDEAILQMDLLSHD 148
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VF T V ++Y+R G YG++VP+
Sbjct: 149 FFVFVNSDTGKVNVLYRRHDGDYGLLVPE 177
[141][TOP]
>UniRef100_Q5YQT3 Putative uncharacterized protein n=1 Tax=Nocardia farcinica
RepID=Q5YQT3_NOCFA
Length = 234
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKA-ISRGAWPGRAGPKEDVDEEDFQEYLK 203
VVR E +N YAA++ V K+ ++L++ K++ + G + + D D + +
Sbjct: 92 VVRAEACADNFYAALESVTAKVESRLRRTKDRRRVHYGEKTPVSVAEATADLVDETLFAR 151
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
D+E + + AE P +++R+K V A P+TV++A+ +E VGH F++
Sbjct: 152 NGSEPAHRHDEEREFEP--AEPEYQGPGHIVRTK-VHSATPMTVDDALYQMELVGHDFFL 208
Query: 384 FREMTTDTVQIVYKRESGGYGVI 452
F + TD +VY+R + YG+I
Sbjct: 209 FHDKETDRPSVVYRRHAFDYGLI 231
[142][TOP]
>UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV
Length = 188
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Frame = +3
Query: 21 NGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRG----AWPGRAGPKEDVDE--E 182
NG++R E+ +++YAAID D + +L+K K + + + PG + DV+ +
Sbjct: 64 NGIIRAEEHHSDMYAAIDKASDVLERQLRKFKTRYMKQRHETVPQPGPGPAEADVNAGLD 123
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
D E++ E+ + + FD P++ E+A+ +EA
Sbjct: 124 DVSEFMPEI-VRQKRFDMR----------------------------PMSPEDAVTQMEA 154
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
+GH FYVF M ++ +VY+R G YG+I P
Sbjct: 155 LGHDFYVFMNMGSNACGVVYRRRDGHYGLIEP 186
[143][TOP]
>UniRef100_B5Y948 Ribosomal subunit interface protein n=1 Tax=Coprothermobacter
proteolyticus DSM 5265 RepID=B5Y948_COPPD
Length = 190
Score = 65.9 bits (159), Expect = 3e-09
Identities = 44/142 (30%), Positives = 71/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E + +LYAAID DK+ + +++ KEK + G E + L E
Sbjct: 70 LIRAEVEDPDLYAAIDKAADKLESNIKRFKEKLFDSR----QGGKVEKTTTLNVGSLLGE 125
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K++ L ++ R + VVL P++ EEA+ +E++GH+F+VF
Sbjct: 126 EKVEEPLIER--------------------RKRFVVL--PMSEEEAVLQMESLGHTFFVF 163
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T +IVYKR+ GYGVI
Sbjct: 164 MDPDTGNPKIVYKRKKRGYGVI 185
[144][TOP]
>UniRef100_C6Q3Y9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter mathranii subsp. mathranii str.
A3 RepID=C6Q3Y9_9THEO
Length = 181
Score = 65.9 bits (159), Expect = 3e-09
Identities = 44/144 (30%), Positives = 71/144 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++Y +ID V DKI ++ K K K R G E + E Y +
Sbjct: 61 IFRAEEVSDDMYGSIDRVVDKIERQILKHKTKL------KNRFGANESIRFEIPPVYQEA 114
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
KEE+ + F ++++K + P++ EEAI + +GH+F+VF
Sbjct: 115 ---------KEEEEETSF---------EIVKTKRFPIK-PMSAEEAILQMNLLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TDT+ +VYKR+ G YG+I P
Sbjct: 156 TNADTDTINVVYKRKDGKYGLIEP 179
[145][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 65.9 bits (159), Expect = 3e-09
Identities = 44/146 (30%), Positives = 74/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+N +R E+ ++LYA IDLV K+ +++K K + + G P+ + E+ Q
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRDNGE--PEPFIAEQ--QT 115
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ E T E +++ ++RSK L P+ EEA+ ++ +GH
Sbjct: 116 VVNEDVEATSESSNENEIE-------------IIRSKQFSLK-PMDSEEAVLQMDLLGHD 161
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FY+F + TD IVY+R+ G YG+I
Sbjct: 162 FYIFTDRETDGTSIVYRRKDGKYGLI 187
[146][TOP]
>UniRef100_C0BAM2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC
27758 RepID=C0BAM2_9FIRM
Length = 189
Score = 65.9 bits (159), Expect = 3e-09
Identities = 43/151 (28%), Positives = 77/151 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E +++Y +IDLV + I +L+K K K I+ K+ + QE
Sbjct: 67 VKGNIIRSEQESSDMYVSIDLVEEIIERQLRKYKTKLIA----------KQQGGHDFRQE 116
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+++ DT + +E ++R+K + P+ E+A +E +GH+
Sbjct: 117 FIES---DTSAAESDE--------------IEIVRTKRFGIK-PMFPEDACIQMELLGHN 158
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQMR 467
FYVF TD V +VYKR++G YG+I P+ +
Sbjct: 159 FYVFSNAETDEVNVVYKRKNGTYGLIEPEFQ 189
[147][TOP]
>UniRef100_B0P2P9 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0P2P9_9CLOT
Length = 179
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/149 (28%), Positives = 76/149 (51%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E+ ++Y +IDLV D I ++++ K + +++ + G + +E +++ED
Sbjct: 59 MKGHIIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQ-KYDGTSFKQEFMEQED--- 114
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
D E+ R ++RSK + P+ VEEA +E +GH
Sbjct: 115 ------------DVEDDEIR------------IIRSKKFAIK-PMDVEEACVQMELLGHD 149
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VFR T V +VYKR+ YG+I P+
Sbjct: 150 FFVFRNADTFEVNVVYKRKGNTYGLIEPE 178
[148][TOP]
>UniRef100_A7B7M8 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
29149 RepID=A7B7M8_RUMGN
Length = 185
Score = 65.9 bits (159), Expect = 3e-09
Identities = 38/149 (25%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E +++Y ++DLV + I +L+K K K ++R + P +F++
Sbjct: 56 VKGNIIRSEQTSDDMYVSVDLVEEVIERQLRKYKNKLVARS----QGHPTASGSGNNFKK 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
E + DT + D+ ++ + + +YP E+A ++ +GH+
Sbjct: 112 EFFESEDDTSVDDEIRIVRTKRFGIKPMYP-----------------EDACIQMDLLGHA 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VF TD V +VYKR+ G +G+I P+
Sbjct: 155 FFVFCNAETDEVNVVYKRKDGSFGLIEPE 183
[149][TOP]
>UniRef100_B7GE66 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7GE66_PHATR
Length = 209
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/135 (31%), Positives = 68/135 (50%)
Frame = +3
Query: 54 NLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFD 233
++YA+ID + KL K K+ ++ W G G K D + E L++V T
Sbjct: 87 DMYASIDAASHALYRKLCKYKDNRVA--GWHG--GEKMGNDIMEVLENLEDVSEYTATPV 142
Query: 234 KEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQ 413
EE + + + ++ K L P++V+EA+ AL+ + H FYVFR T+ +
Sbjct: 143 AEEYVDPEAPTITKV--------KNFDLTKPMSVQEAVFALDYIDHDFYVFRNAETNEIS 194
Query: 414 IVYKRESGGYGVIVP 458
+VYKR GG G++ P
Sbjct: 195 VVYKRHVGGIGLVEP 209
[150][TOP]
>UniRef100_Q97F93 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Clostridium
acetobutylicum RepID=Q97F93_CLOAB
Length = 174
Score = 65.5 bits (158), Expect = 4e-09
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NGV+ R E+ N++YA+ID+V DK+ +++K K K ++ + +
Sbjct: 57 NGVILRGEETNNDMYASIDIVGDKLERQVRKQKTK----------------LERRKYSDS 100
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
LK + + KEEQ ++++K + P++ EEA+ +E +GH+F
Sbjct: 101 LKFQNIPD--YHKEEQ------------EPEIVKTKRFAIK-PMSEEEAVLEMELLGHNF 145
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+VF+ ++ V +VYKR+ G YG+I P+
Sbjct: 146 FVFQNGDSNEVNVVYKRKDGNYGLIEPE 173
[151][TOP]
>UniRef100_C6D4V5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Paenibacillus sp. JDR-2 RepID=C6D4V5_PAESJ
Length = 182
Score = 65.5 bits (158), Expect = 4e-09
Identities = 44/142 (30%), Positives = 75/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R ED ++Y++ID+V DK+ +++K K K R E + F+E L +
Sbjct: 61 MLRAEDKSEDMYSSIDVVVDKLERQIRKHKTKM-------NRKFRHESGVKALFKEGLSQ 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ + D+E++L+ ++R+K +L P+ VEEAI + VGH+F+VF
Sbjct: 114 TAVS--VMDEEDELE-------------LVRTKRFMLK-PMDVEEAILQMNMVGHNFFVF 157
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ V +VYKR G YG+I
Sbjct: 158 SNIDNKEVNVVYKRSDGKYGLI 179
[152][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 65.5 bits (158), Expect = 4e-09
Identities = 44/141 (31%), Positives = 68/141 (48%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + P +V DF
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIARKHR---EKVPTGEVFSADFNN----- 116
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
EQ++ A V+R+K + L P+ VEEAI +E +GH F+++
Sbjct: 117 ----------EQVEEAPA-------VEVVRTKNIELK-PMDVEEAILQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ T ++YKRE G YG+I
Sbjct: 159 DSEDHTTNVLYKREDGNYGLI 179
[153][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 65.5 bits (158), Expect = 4e-09
Identities = 43/146 (29%), Positives = 74/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L N V+R E+ +LYA++DL+ DK+ +++K K K + G E+D+
Sbjct: 60 LPNLVLRAEETNGDLYASVDLIADKLERQIRKHKTKVNRKFRDKG--------SEKDYFA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ E+ T + + Y ++R+K+ L P+ EEA+ + +GH+
Sbjct: 112 F-SEINDSTPSEETDSD-----------YDIEIVRTKSFSLK-PMDSEEAVLQMNLLGHN 158
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+VF + T+ IVYKR+ G YG+I
Sbjct: 159 FFVFNDAETNGTNIVYKRKDGKYGLI 184
[154][TOP]
>UniRef100_A6CQE4 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. SG-1
RepID=A6CQE4_9BACI
Length = 189
Score = 65.5 bits (158), Expect = 4e-09
Identities = 47/142 (33%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ ++YAAIDL+ DK+ +++K K K + G PKE QE L
Sbjct: 64 VLRAEERHEDMYAAIDLIVDKLERQIRKHKTKVNRKMREKG--SPKEFFAA---QEGLTT 118
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+++ + + EE + V+R+K L P+ EEAI + +GHSF++F
Sbjct: 119 SQLNEKARETEENDE-------------VVRTKQFNLK-PMDSEEAILQMNLLGHSFFIF 164
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVYKR G YG+I
Sbjct: 165 TDAETNATNIVYKRRDGKYGLI 186
[155][TOP]
>UniRef100_Q7XYJ6 Ribosomal protein rpS22 (Fragment) n=1 Tax=Bigelowiella natans
RepID=Q7XYJ6_BIGNA
Length = 170
Score = 65.5 bits (158), Expect = 4e-09
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG-RAGPKEDVDE 179
T+Y + V+R + + Y++IDLV D + KL+K KE+ + G R D+ +
Sbjct: 19 TVYVKDSKVIRGSVSSVSEYSSIDLVTDLVNRKLRKYKERKEGKRTASGVRTFYTNDISD 78
Query: 180 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALE 359
E D ++ + +A + + +V+R K + PI++E+A L+
Sbjct: 79 SSDVEGAAVQGQDDVQQEEYSGIPEGYAPVEDV---SVVRRKKFPMP-PISIEDATLCLD 134
Query: 360 AVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+ H FYVFR T + +VY+R GG G+I P+
Sbjct: 135 YLDHDFYVFRNSETKEINVVYRRAEGGVGLIEPE 168
[156][TOP]
>UniRef100_Q38YD3 30S ribosomal interface protein S30EA n=1 Tax=Lactobacillus sakei
subsp. sakei 23K RepID=Q38YD3_LACSS
Length = 181
Score = 65.1 bits (157), Expect = 5e-09
Identities = 42/142 (29%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ ++Y ++DLV DK+ +++K K K ++ + + +K
Sbjct: 64 VLRAEETSPDMYGSVDLVTDKLERQIRKYKTK----------------INRKSRERGIKG 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
V++ + EE L + P V+R+K V L P+ EEAI + +GH F++F
Sbjct: 108 VEL---VVSSEETLPEE--------PMQVVRTKRVSLK-PMDSEEAILQMNMLGHEFFIF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVYKR+ G YG+I
Sbjct: 156 EDSETNGTSIVYKRQDGRYGLI 177
[157][TOP]
>UniRef100_B0TGY7 Sigma 54 modulation protein/ribosomal protein s30ae n=1
Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGY7_HELMI
Length = 174
Score = 65.1 bits (157), Expect = 5e-09
Identities = 44/145 (30%), Positives = 69/145 (47%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E++ ++YAAIDLV +K+ ++ K K R + + F+E+
Sbjct: 60 LLRAEESHPDMYAAIDLVFEKLEKQVDAYKTKLSRR------------LKGQGFKEFAA- 106
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
AE N V+RSK L P+ V+EAI + +GHSF+VF
Sbjct: 107 ------------------AEKNGATEPRVVRSKRFALK-PMPVDEAIMQMNLIGHSFFVF 147
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
T+ V +VY R+ G YG+I P+
Sbjct: 148 SNAETEQVNVVYLRKDGNYGLIEPE 172
[158][TOP]
>UniRef100_B6FRG1 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM
1787 RepID=B6FRG1_9CLOT
Length = 178
Score = 65.1 bits (157), Expect = 5e-09
Identities = 43/151 (28%), Positives = 74/151 (49%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E +++Y +IDLV + I +L+K K K I+R G +FQ
Sbjct: 56 VKGHIIRSEQVSDDMYVSIDLVEEVIERQLRKYKNKLIARQQEGG-----------NFQS 104
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
E + DT D+ ++R+K + P+ E+A +E +GH+
Sbjct: 105 EFFEAEQDTSNNDE----------------IKIIRTKRFGIK-PMFPEDACVQMELLGHN 147
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQMR 467
F+VF TD V +VYKR++ YG+I P+ +
Sbjct: 148 FFVFSNAETDEVNVVYKRKNNTYGLIEPEFQ 178
[159][TOP]
>UniRef100_Q3AI28 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. CC9605 RepID=Q3AI28_SYNSC
Length = 195
Score = 64.7 bits (156), Expect = 7e-09
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG---PKEDVDEEDFQEY 197
V+R ++ NLYA+IDL K+ +L++ KE+ G + P DV +
Sbjct: 65 VIRAQERSENLYASIDLAAGKLARQLRRWKERHSDHHHSHGHSASHTPSTDVVND----- 119
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
++ L LQ + AEL P +R K + P+ +EEA L+ + H F
Sbjct: 120 --ASPVEASL------LQGREAEL----PDPGVRRKYFAMP-PMGLEEARRQLDLIDHDF 166
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
Y+FRE +D +Q++Y+R GGYGVI
Sbjct: 167 YLFREKESDQLQVIYRRNHGGYGVI 191
[160][TOP]
>UniRef100_A9W9Y4 Ribosomal subunit interface protein n=2 Tax=Chloroflexus
RepID=A9W9Y4_CHLAA
Length = 197
Score = 64.7 bits (156), Expect = 7e-09
Identities = 44/146 (30%), Positives = 75/146 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +LYAAID V + ++ ++ + K+K R RA EE +
Sbjct: 66 ILRAEERAPDLYAAIDEVQEVLQRQIARYKDKYWRRSREQRRAPNGLTPAEEVAIAEAEA 125
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ T E A V+R+KT L P+ V++AI+ +E +GH+F+VF
Sbjct: 126 AALATPTEVGSE--------------ARVIRTKTFRLR-PMFVDDAIEQMELLGHNFFVF 170
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQM 464
++ T V ++Y+R G YGVI+P++
Sbjct: 171 QDAETMQVSVLYRRRDGNYGVIIPEV 196
[161][TOP]
>UniRef100_A5N3B3 Predicted ribosome-associated protein n=2 Tax=Clostridium kluyveri
RepID=A5N3B3_CLOK5
Length = 175
Score = 64.7 bits (156), Expect = 7e-09
Identities = 40/145 (27%), Positives = 72/145 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +++YA+IDLV DK+ +++K K K + R + + FQ E
Sbjct: 60 ILRGEEENDDMYASIDLVLDKLEGQIRKQKTKLLKR----------NNSESLRFQFIPDE 109
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ D Q ++++K + P++ EEA+ +E +GHSF+V+
Sbjct: 110 KETDNQ-------------------EHKIVKTKRFAV-KPMSSEEAVLQMELLGHSFFVY 149
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
R+ V ++YKR G YG+I P+
Sbjct: 150 RDAEQGDVNVIYKRRDGNYGLIEPE 174
[162][TOP]
>UniRef100_C9N8U8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Streptomyces flavogriseus ATCC 33331
RepID=C9N8U8_9ACTO
Length = 229
Score = 64.7 bits (156), Expect = 7e-09
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
R V+R E A + YAA+DL DK+ A+L+K +K SR GR E +
Sbjct: 65 RGPVIRAEAAAGDPYAALDLATDKLDARLRKEHDKRYSRRG-NGRLSASE---VAEVVPG 120
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPAN----VMRSKTVVLADPITVEEAIDALEAV 365
D +L +E + + V+R KT V A P+T+++A+ +E V
Sbjct: 121 AASFNGDGELIPEETTPSVPTTRIGSLEVQGEGPLVVREKTHVAA-PMTLDQALYEMELV 179
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVI----VPQMRD*AGGS 485
GH FY+F + T +VY+R + YGVI P D AGG+
Sbjct: 180 GHDFYLFVDSETKEPSVVYRRHAYDYGVIHLRTDPLASDEAGGA 223
[163][TOP]
>UniRef100_C4G2X0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G2X0_ABIDE
Length = 175
Score = 64.7 bits (156), Expect = 7e-09
Identities = 40/149 (26%), Positives = 69/149 (46%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E +++Y +IDL+ D I +L++ K K + ++
Sbjct: 56 VKGHIIRAEQVSDDMYVSIDLIEDIIERQLRRYKTKIVD--------------SKQSASN 101
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ D D++ V+R+K + P+ EEA +E + HS
Sbjct: 102 FTSAFMQDDDYEDED---------------VKVIRTKRFAVK-PMDPEEACVQMELLNHS 145
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVFR TD V +VYKR++G YG+I P+
Sbjct: 146 FYVFRNAETDEVNVVYKRKNGDYGLIEPE 174
[164][TOP]
>UniRef100_C0X601 Ribosome-associated inhibitor protein Y n=22 Tax=Enterococcus
faecalis RepID=C0X601_ENTFA
Length = 189
Score = 64.7 bits (156), Expect = 7e-09
Identities = 43/142 (30%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K + GR K V
Sbjct: 70 VLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAV----------- 118
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
F E+ + +EL+ ++R+K + L P+ EEA+ + +GH+F++F
Sbjct: 119 -------FLVGEETEETPSELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHNFFIF 164
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R+ G YG+I
Sbjct: 165 EDAETNGTSIVYRRKDGKYGLI 186
[165][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 64.3 bits (155), Expect = 9e-09
Identities = 44/142 (30%), Positives = 70/142 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ++ NLYA+IDLV K+ +L++ KE+ G + + E E
Sbjct: 65 VIRAQERSENLYASIDLVASKLARQLRRFKERHSDHGHRTTPTAANDVLLTERPTE---- 120
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D+ L KE QL P+ +R K + +++EEA LE + H FY+F
Sbjct: 121 ---DSLLEGKEAQL-----------PSPGVRRKYFAMP-AMSLEEARHQLELIDHDFYLF 165
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
R+ + +Q++Y R GG+GVI
Sbjct: 166 RDKESGELQVIYHRNHGGFGVI 187
[166][TOP]
>UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9BUA9_ENTFC
Length = 183
Score = 64.3 bits (155), Expect = 9e-09
Identities = 43/142 (30%), Positives = 77/142 (54%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K R + ++ D
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTKI-------NRKSRETGMNTADA------ 110
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
T LF++E++ + +EL+ ++R+K + L P+ EEA+ + +GH+F++F
Sbjct: 111 ----TALFNEEDENEND-SELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHNFFIF 158
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R+ G YG+I
Sbjct: 159 EDAETNGTSIVYRRKDGKYGLI 180
[167][TOP]
>UniRef100_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Eggerthella lenta DSM 2243 RepID=C8WMZ8_9ACTN
Length = 191
Score = 64.3 bits (155), Expect = 9e-09
Identities = 41/142 (28%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++RVE+ E ++YAAID+ K+ +L+K K K + R RA + E L
Sbjct: 66 IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDRKL---RAADETIRIEPSAAGELDV 122
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ +L D E V+R KT+ +P+T EEA+ ++ +GH F+ +
Sbjct: 123 DGLMQELSDDE-----------------VVRVKTIEF-EPLTEEEALVKIDLLGHDFFAY 164
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ + V ++Y+R+ GGYG++
Sbjct: 165 TDRDSGLVNVLYRRDDGGYGLL 186
[168][TOP]
>UniRef100_C8NWC8 S30AE family protein n=1 Tax=Corynebacterium genitalium ATCC 33030
RepID=C8NWC8_9CORY
Length = 224
Score = 64.3 bits (155), Expect = 9e-09
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK-EKAISRGAWPGRAGPKEDVDEEDF 188
T + + R E E++ YAA++ K+ L+K+K + IS G G PK E
Sbjct: 76 TGKGHLARAEAKEDSFYAALESAIGKMERSLRKVKVRREISMG---GHRAPKSTY--EVT 130
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAE-LNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
E + E + Q +++++ ++AE +N P V+R+K A P++V+EA+ +E V
Sbjct: 131 SELVAEAEQARQ--EQDDRYADKYAESINENLPGQVVRTKEHP-ATPMSVDEALSEMELV 187
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVI 452
GH FY+F +VY+R + YG+I
Sbjct: 188 GHDFYLFINDENQRPSVVYRRHAYDYGLI 216
[169][TOP]
>UniRef100_C6Q126 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium carboxidivorans P7 RepID=C6Q126_9CLOT
Length = 175
Score = 64.3 bits (155), Expect = 9e-09
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NG++ R E+ +++YA+IDLV DK+ +++K K K R D FQ
Sbjct: 57 NGIILRGEEENDDMYASIDLVVDKLEGQIRKQKTKLQRR----------THSDSLKFQ-- 104
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
D + DKEE + ++++K + P++ EEA+ +E +GH+F
Sbjct: 105 ---FIPDLEPKDKEE--------------SKIVKTKRFAI-KPMSSEEAVLQMELLGHNF 146
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+V+++ V +VYKR+ G YG+I P+
Sbjct: 147 FVYKDAENGEVNVVYKRKDGNYGLIEPE 174
[170][TOP]
>UniRef100_C6MPU4 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacter sp. M18 RepID=C6MPU4_9DELT
Length = 182
Score = 64.3 bits (155), Expect = 9e-09
Identities = 41/150 (27%), Positives = 76/150 (50%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YA+ID V DKI +L++ KE+ + P D E Q
Sbjct: 55 TAKGITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAH-------KPAADARERQVQ 107
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ + +Q Q E P ++++K+ + P++VEEA+ +E +
Sbjct: 108 KAI---------------VQAQGIEEGTQTPV-IIKTKSFTM-KPMSVEEAVMQMELLHK 150
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F V+ E +T+T+ +VY+R+ G YG+I P+
Sbjct: 151 DFLVYTESSTETINVVYRRKDGNYGLISPE 180
[171][TOP]
>UniRef100_Q49VV1 Uncharacterized protein SSP1964 n=1 Tax=Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305
RepID=Y1964_STAS1
Length = 190
Score = 64.3 bits (155), Expect = 9e-09
Identities = 41/146 (28%), Positives = 73/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L+ +R E+ ++LYA IDL+ +K+ +++K K + R G E++
Sbjct: 60 LKKVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRG---------EQEAFA 110
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L E K ++ + E + + ++R+K L P+ EEA+ ++ +GH
Sbjct: 111 SLPEEKEAVEIQNDENEADNEI---------EIIRAKNFSLK-PMDSEEAVLQMDLLGHD 160
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVYKR+ G YG+I
Sbjct: 161 FFIFTDRETDGTSIVYKRKDGKYGLI 186
[172][TOP]
>UniRef100_Q9K6W6 Ribosomal protein S30AE family n=1 Tax=Bacillus halodurans
RepID=Q9K6W6_BACHD
Length = 187
Score = 63.9 bits (154), Expect = 1e-08
Identities = 43/145 (29%), Positives = 73/145 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +++YAAIDLV +K+ +++K K K + G D E +E
Sbjct: 62 LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNDLEPMDGMREE 121
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ L ++E+ LQ V+R K L P+ EEAI ++ +GH+F+VF
Sbjct: 122 I-----LLEEEDDLQ-------------VVRKKRFNLK-PMDTEEAILQMDMLGHNFFVF 162
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
+ +VY+R+ G YG+I P+
Sbjct: 163 SNAISGDTNVVYRRKDGKYGLIEPE 187
[173][TOP]
>UniRef100_Q03SQ1 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Lactobacillus brevis ATCC 367 RepID=Q03SQ1_LACBA
Length = 186
Score = 63.9 bits (154), Expect = 1e-08
Identities = 38/141 (26%), Positives = 72/141 (51%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R E+ +LYA++DLV DK+ +++K K K V+ + ++ K +
Sbjct: 65 LRAEETSPDLYASVDLVTDKLERQIRKYKTK----------------VNRKSREKGYKNL 108
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
T+ + ++ + E V+R+K V L P+ EEA+ ++ +GH F+++
Sbjct: 109 DFSTETSESDKPAEGSELE--------VVRTKRVSLK-PMDTEEAVLQMDMLGHDFFIYE 159
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ +D + IVY+R G YG+I
Sbjct: 160 DAESDGISIVYRRNDGRYGLI 180
[174][TOP]
>UniRef100_B1MVU9 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Leuconostoc citreum
KM20 RepID=B1MVU9_LEUCK
Length = 182
Score = 63.9 bits (154), Expect = 1e-08
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-------PKEDVDEED 185
V+R ED +LYAA+D V +K+ +++K K K + G G P D D+E
Sbjct: 63 VLRAEDTNPDLYAAVDAVSEKLERQIRKYKTKINRKSRETGFKGIDSKNEIPATDSDDEA 122
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
Q ++R+K V L P++ EEA ++ +
Sbjct: 123 LQ---------------------------------IVRTKQVDLK-PMSPEEAALQMDLL 148
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVI 452
GH+F++FR+ T+T ++YKR+ G YG++
Sbjct: 149 GHNFFIFRDADTNTDSVIYKRQDGKYGLL 177
[175][TOP]
>UniRef100_D0CH01 Sigma 54 modulation protein n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CH01_9SYNE
Length = 195
Score = 63.9 bits (154), Expect = 1e-08
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG---PKEDVDEEDFQEY 197
V+R ++ NLYA+IDL K+ +L++ KE+ G + P DV +
Sbjct: 65 VIRAQERSENLYASIDLAAGKLARQLRRWKERHSDHHHSHGHSASHTPSTDVVND----- 119
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
+++ L LQ + AEL P +R K + P+ +E+A L+ + H F
Sbjct: 120 --ASPVESSL------LQGREAEL----PDPGVRRKYFAMP-PMGLEDARRQLDLIDHDF 166
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
Y+FRE +D +Q++Y+R GGYGVI
Sbjct: 167 YLFREKESDQLQVIYRRNHGGYGVI 191
[176][TOP]
>UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Pediococcus pentosaceus ATCC 25745
RepID=Q03GZ9_PEDPA
Length = 184
Score = 63.5 bits (153), Expect = 1e-08
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG---PKEDVDEEDFQEY 197
V+R E+ +LYA++DLV DK+ +L+K K K + G G P D+ E
Sbjct: 64 VLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRETGYKGVEIPSGDIVEN----- 118
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
E+ QF +++R+K V L P+ EEAI ++ +GH+F
Sbjct: 119 --------------EEEASQF---------DIVRTKQVSLK-PMGSEEAILQMDMLGHNF 154
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
+++ + + +V IVY+R G YG+I
Sbjct: 155 FIYEDAESGSVDIVYRRRDGRYGLI 179
[177][TOP]
>UniRef100_B8I5T8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulolyticum H10 RepID=B8I5T8_CLOCE
Length = 176
Score = 63.5 bits (153), Expect = 1e-08
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +3
Query: 21 NGV-VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
NGV +R ED ++Y +ID V D I +++K K + R + + DF
Sbjct: 57 NGVTLRAEDQNEDMYTSIDRVIDLIERQIRKNKTRLERR------------LHDHDF--- 101
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
K+D F + Q + +F V+RSK + P+ VEEAI + +GH F
Sbjct: 102 ----KVDNSKFTYDVQEETEF---------KVVRSKRFAVK-PMDVEEAILQMNLLGHEF 147
Query: 378 YVFREMTTDTVQIVYKRESGGYGVIVPQ 461
++F + V +VYKR+ G YG+I P+
Sbjct: 148 FMFYNADSRQVNVVYKRKDGNYGLIEPE 175
[178][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 63.5 bits (153), Expect = 1e-08
Identities = 45/146 (30%), Positives = 71/146 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L N V+R E+ +LYA+IDL+ DK+ +++K K K + G E D+
Sbjct: 60 LPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGA--------ERDYFA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
Y +V T + E + ++R+K L P+ EEA+ + +GHS
Sbjct: 112 Y-SDVNGSTPPEENESD-----------FDLEIVRTKQFSLK-PMDSEEAVLQMNLLGHS 158
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FYV+ + T+ IVY R+ G YG+I
Sbjct: 159 FYVYTDAETNGTNIVYSRKDGKYGLI 184
[179][TOP]
>UniRef100_C7IPR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter ethanolicus CCSD1
RepID=C7IPR2_THEET
Length = 181
Score = 63.5 bits (153), Expect = 1e-08
Identities = 46/144 (31%), Positives = 70/144 (48%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++Y +ID V DKI ++ K K K R G E + E Y +E
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKL------KNRFGANESIRFEIPPVY-EE 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K +EE+ + + R +P P++ EEAI + +GHSF+VF
Sbjct: 114 AK------GEEEEGSFEIVKTKR-FPIK-----------PMSPEEAILQMNLLGHSFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TDT+ +VYKR+ G YG+I P
Sbjct: 156 TNADTDTINVVYKRKDGKYGLIEP 179
[180][TOP]
>UniRef100_UPI0001B4CD4A hypothetical protein SgriT_22340 n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B4CD4A
Length = 230
Score = 63.2 bits (152), Expect = 2e-08
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
R V+R E A ++ YAA+DL +K+ A+L+K +K SR R E D
Sbjct: 65 RGPVIRAEAAASDAYAALDLAAEKLDARLRKQHDKRFSRRG-ARRISAAEVPDHVPGAAT 123
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELN-RIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
L + D + ++ L + V+R KT V A P+T+ +A+ +E VGH
Sbjct: 124 LNGTGAGSAQEDSDAVPTKKIGSLEVQGDGPLVVREKTHVAA-PMTLNQALYEMELVGHD 182
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FY+F + T +VY+R + YGVI
Sbjct: 183 FYLFVDSETKEPSVVYRRHAYDYGVI 208
[181][TOP]
>UniRef100_B1VUY0 Putative uncharacterized protein n=1 Tax=Streptomyces griseus
subsp. griseus NBRC 13350 RepID=B1VUY0_STRGG
Length = 229
Score = 63.2 bits (152), Expect = 2e-08
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE---------- 167
R V+R E A + YAA+DL K+ A+L+K +K SR GR E
Sbjct: 65 RGPVIRAEAAAGDPYAALDLATGKLEARLRKQHDKRYSRRG-NGRLSAAEVGDVVPGVAS 123
Query: 168 -DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEA 344
D D E + E T++ E Q + VMR KT A P+++++A
Sbjct: 124 FDEDGELVGDQPSEPVPTTKIGSLEVQGEGPL----------VMREKTHTAA-PMSLDQA 172
Query: 345 IDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVI----VPQMRD*AGGS 485
+ +E VGH FY+F + T +VY+R + YGVI P D AGG+
Sbjct: 173 LYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVIHLRTDPLAADEAGGA 223
[182][TOP]
>UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus faecium RepID=C9BP47_ENTFC
Length = 183
Score = 63.2 bits (152), Expect = 2e-08
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K I+R + +E
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS--------------------RE 102
Query: 207 VKMDTQ----LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
M+T LF++E++ + +EL+ ++R+K + L P+ EEA+ + +GH+
Sbjct: 103 TGMNTADAAALFNEEDENEND-SELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHN 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + T+ IVY+R+ G YG+I
Sbjct: 155 FFIFEDAETNGTSIVYRRKDGKYGLI 180
[183][TOP]
>UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC
Length = 183
Score = 63.2 bits (152), Expect = 2e-08
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K I+R + +E
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS--------------------RE 102
Query: 207 VKMDTQ----LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
M+T LF++E++ + +EL+ ++R+K + L P+ EEA+ + +GH+
Sbjct: 103 TGMNTANAAALFNEEDENEND-SELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHN 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + T+ IVY+R+ G YG+I
Sbjct: 155 FFIFEDAETNGTSIVYRRKDGKYGLI 180
[184][TOP]
>UniRef100_C6PBD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571
RepID=C6PBD3_CLOTS
Length = 179
Score = 63.2 bits (152), Expect = 2e-08
Identities = 42/144 (29%), Positives = 71/144 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++YA+ID V DK+ ++ K K K + A E + + Q+Y+K
Sbjct: 61 IFRAEEVSDDMYASIDNVVDKLEKQILKYKTKLKNNFA-------VESIRFDVQQDYIKN 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D E+ + + + R +P P++V+EAI + +GH+F+VF
Sbjct: 114 --------DLSEETEFEVVKTKR-FPVK-----------PMSVQEAILQMNLLGHNFFVF 153
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TD +VYKR+ G YG+I P
Sbjct: 154 TNSDTDDFTVVYKRKDGRYGLIEP 177
[185][TOP]
>UniRef100_C5R7Z6 Ribosome-associated inhibitor protein Y n=1 Tax=Weissella
paramesenteroides ATCC 33313 RepID=C5R7Z6_WEIPA
Length = 238
Score = 63.2 bits (152), Expect = 2e-08
Identities = 40/142 (28%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R ED + ++Y +D V DK+ +++K K K + G G ++ DF
Sbjct: 112 LLRAEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSREKGYKG----LENTDF------ 161
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ +D +E + + E ++R+K V L P+ VEEA+ +E +GH F++F
Sbjct: 162 MAVDPAAAVEEPEPEDDGLE--------IVRTKHVDLK-PMDVEEAVLQMELLGHEFFIF 212
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
++ TD +VYKR G Y ++
Sbjct: 213 QDAETDLPAVVYKRRDGKYALL 234
[186][TOP]
>UniRef100_C5QVF5 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis W23144 RepID=C5QVF5_STAEP
Length = 189
Score = 63.2 bits (152), Expect = 2e-08
Identities = 43/146 (29%), Positives = 75/146 (51%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L++ +R E+ ++LYA IDL+ +K+ +++K K + + G D++ F
Sbjct: 60 LKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRDRG--------DQDIFVA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E + Q D E + N I ++RSK L P+ EEA+ + +GH
Sbjct: 112 EVQESTANNQADDIESE--------NDI---EIIRSKQFSLK-PMDSEEAVLQMNLLGHD 159
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVY+R+ G YG+I
Sbjct: 160 FFIFTDRETDGTSIVYRRKDGKYGLI 185
[187][TOP]
>UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus
faecium RepID=C2HCP0_ENTFC
Length = 183
Score = 63.2 bits (152), Expect = 2e-08
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K I+R + +E
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS--------------------RE 102
Query: 207 VKMDTQ----LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
M+T LF+ EE+ + +EL+ ++R+K + L P+ EEA+ + +GH+
Sbjct: 103 TGMNTADAAVLFNGEEENEND-SELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHN 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + T+ IVY+R+ G YG+I
Sbjct: 155 FFIFEDAETNGTSIVYRRKDGKYGLI 180
[188][TOP]
>UniRef100_B9Y7S1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
12042 RepID=B9Y7S1_9FIRM
Length = 178
Score = 63.2 bits (152), Expect = 2e-08
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Frame = +3
Query: 24 GVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLK 203
G++R E +LYAAIDL DK+ ++++ K + R
Sbjct: 61 GILRTEVEHEDLYAAIDLAIDKLEDQVRRQKTRLSRR----------------------- 97
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPAN---VMRSKTVVLADPITVEEAIDALEAVGHS 374
E+L F E + + +R+KTV A + +EEAI +E +GHS
Sbjct: 98 ----------HREKLALSFVEQDNVKLDQGDIAVRTKTVK-AQRMDLEEAIMRMEMLGHS 146
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F+++ + TD+ +VYKR SGGYG++
Sbjct: 147 FFIYTDEETDSTAVVYKRNSGGYGLL 172
[189][TOP]
>UniRef100_B9M9R3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacter sp. FRC-32 RepID=B9M9R3_GEOSF
Length = 181
Score = 62.8 bits (151), Expect = 3e-08
Identities = 40/149 (26%), Positives = 76/149 (51%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YAA+D V DKI +L++ KE+ + P D E Q
Sbjct: 55 TAKGITIKAAEETNDMYAAVDAVVDKIERQLRRYKERIKAH-------KPATDSRERIVQ 107
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ + E E +++Q + ++R+KT L P++VEEA+ ++ +
Sbjct: 108 KSIVEA----------ESIEQQKEPV-------IIRTKTFSL-KPMSVEEAVMQMDLLHK 149
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVP 458
F V+ E T+++ ++Y+R+ G YG+I P
Sbjct: 150 DFLVYTEAATESINVIYRRKDGNYGLIEP 178
[190][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 62.8 bits (151), Expect = 3e-08
Identities = 45/146 (30%), Positives = 71/146 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L N V+R E+ +LYA+IDL+ DK+ +++K K K + G E D+
Sbjct: 60 LPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGA--------ERDYFA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
Y +V T + E + ++R+K L P+ EEA+ + +GHS
Sbjct: 112 Y-SDVNGSTPPEENEGD-----------FDLEIVRTKQFSLK-PMDSEEAVLQMNLLGHS 158
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FYV+ + T+ IVY R+ G YG+I
Sbjct: 159 FYVYTDAETNGTNIVYSRKDGKYGLI 184
[191][TOP]
>UniRef100_B0KBV4 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Thermoanaerobacter RepID=B0KBV4_THEP3
Length = 181
Score = 62.8 bits (151), Expect = 3e-08
Identities = 45/144 (31%), Positives = 70/144 (48%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++Y +ID V DKI ++ K K K R G E + E Y +E
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKL------KNRFGSNESIRFEIPPAY-EE 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K +EE+ + + R +P P++ EEAI + +GH+F+VF
Sbjct: 114 AK------GEEEEGSFEIVKTKR-FPIK-----------PMSPEEAILQMNLLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TDT+ +VYKR+ G YG+I P
Sbjct: 156 TNADTDTINVVYKRKDGKYGLIEP 179
[192][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 62.8 bits (151), Expect = 3e-08
Identities = 45/142 (31%), Positives = 70/142 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +++YAAIDLV DKI +++K K K + G PK + L+E
Sbjct: 60 LLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKG--SPKTTFILTESAATLEE 117
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
VK D ++R+K L P+ VEEAI ++ +GH+F+VF
Sbjct: 118 VKEDD---------------------LELVRTKRFDLK-PMDVEEAILQMDMLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
T+ +VY R+ G YG+I
Sbjct: 156 TNADTNETNVVYGRKDGKYGLI 177
[193][TOP]
>UniRef100_C0GF81 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GF81_9FIRM
Length = 177
Score = 62.8 bits (151), Expect = 3e-08
Identities = 42/147 (28%), Positives = 75/147 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E++ ++YA+ID V DK+ ++ K K + I+R A G +K
Sbjct: 60 ILRAEESTGDMYASIDSVVDKLERQIAKYKTR-INRKARQGGG--------------IKA 104
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ Q+ D+EE +V+++K V+ P+ VEEAI + +GH F+VF
Sbjct: 105 MNELPQVEDEEEDW-------------DVVKTKRFVVK-PMPVEEAILQMNLLGHDFFVF 150
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQMR 467
+ V ++Y+R+ G YG+I P ++
Sbjct: 151 MNADNEDVNVIYRRKDGKYGLIEPALK 177
[194][TOP]
>UniRef100_A0NI00 Ribosomal subunit interface protein n=1 Tax=Oenococcus oeni ATCC
BAA-1163 RepID=A0NI00_OENOE
Length = 190
Score = 62.8 bits (151), Expect = 3e-08
Identities = 42/141 (29%), Positives = 69/141 (48%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R E+ +++ Y A+DLV K+ +++K K + + G G DF E + V
Sbjct: 65 LRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRERGFKGI-------DFNEAIDPV 117
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
DT N +V+R KT+ L P+ +EEA+ +E + H F++F
Sbjct: 118 PSDT----------------NEDKKIDVIRRKTLSLK-PMDIEEAVLQMEMLDHDFFLFL 160
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
T+ + IVYKR+ G YG+I
Sbjct: 161 NSDTNQLDIVYKRDDGKYGLI 181
[195][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 62.8 bits (151), Expect = 3e-08
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE----- 167
T++T R+GV+R E+ + YA+IDL I+ KL+KIKEK G P
Sbjct: 141 TLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPS 200
Query: 168 --DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEE 341
D +++D Q LK+++ D++ L R V+R+K V P++ EE
Sbjct: 201 LLDNNDDDAQAQLKDLEEAVGAEDEDTVLTR------------VVRTK-VFEMPPLSGEE 247
Query: 342 AIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
A++ L H+F+ + ++E G +G IVPQ
Sbjct: 248 AMEQLGNGDHTFHALPRRKNGGDEPPVQKEGGRFGPIVPQ 287
[196][TOP]
>UniRef100_Q8XIE9 30S ribosomal protein S30AE family n=1 Tax=Clostridium perfringens
RepID=Q8XIE9_CLOPE
Length = 179
Score = 62.4 bits (150), Expect = 3e-08
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG----RAGPKEDVDEED 185
NG++ R E++ +++Y +IDLV +KI +++K K + + + P ED+ EE
Sbjct: 57 NGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRYDSLRFAHIDPIEDMKEEK 116
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
+ +K + D + P+ EEA+ +E +
Sbjct: 117 EAKIVKTKRFDVK---------------------------------PMGAEEAVLQMELI 143
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
GH F+VF++ T+ + +VYKR+ G YG+I P
Sbjct: 144 GHDFFVFQDPETNQLNVVYKRKDGNYGLIEP 174
[197][TOP]
>UniRef100_Q0SR10 Ribosomal subunit interface protein n=1 Tax=Clostridium perfringens
SM101 RepID=Q0SR10_CLOPS
Length = 179
Score = 62.4 bits (150), Expect = 3e-08
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG----RAGPKEDVDEED 185
NG++ R E++ +++Y +IDLV +KI +++K K + + + P ED+ EE
Sbjct: 57 NGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRYDSLRFAHIDPIEDMKEEK 116
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
+ +K + D + P+ EEA+ +E +
Sbjct: 117 EAKIVKTKRFDVK---------------------------------PMGAEEAVLQMELI 143
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
GH F+VF++ T+ + +VYKR+ G YG+I P
Sbjct: 144 GHDFFVFQDPETNQLNVVYKRKDGNYGLIEP 174
[198][TOP]
>UniRef100_B2A816 Sigma 54 modulation protein, SSU ribosomal protein S30P n=1
Tax=Natranaerobius thermophilus JW/NM-WN-LF
RepID=B2A816_NATTJ
Length = 178
Score = 62.4 bits (150), Expect = 3e-08
Identities = 41/146 (28%), Positives = 69/146 (47%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+VR E + ++YA++D V DK+ +++K K K + G + KE + + +
Sbjct: 63 LVRGEQSTGDMYASVDQVIDKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGK---- 118
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D E ++FA P+T EEA+ +E +GH F+VF
Sbjct: 119 --------DPEIVKTKRFA------------------IKPMTPEEAVLQMELIGHDFFVF 152
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQM 464
R T+ V +VY+R+ G YG I P++
Sbjct: 153 RNAETEEVNVVYRRKDGNYGQIEPEV 178
[199][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 62.4 bits (150), Expect = 3e-08
Identities = 43/142 (30%), Positives = 73/142 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +++YAAIDLV DKI +++K K K + G A + ++ QE ++E
Sbjct: 60 LLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSAKTAFILPDQLGQEEVQE 119
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+++ ++R+K L P+ VEEAI ++ +GH+F+VF
Sbjct: 120 DELE------------------------LVRTKRFDLK-PMDVEEAILQMDMLGHNFFVF 154
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
T+ IVY R+ G YG+I
Sbjct: 155 TNADTNETNIVYGRKDGKYGLI 176
[200][TOP]
>UniRef100_A5G5S5 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Geobacter uraniireducens Rf4 RepID=A5G5S5_GEOUR
Length = 181
Score = 62.4 bits (150), Expect = 3e-08
Identities = 40/149 (26%), Positives = 75/149 (50%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YAA+D V DKI +L++ KE+ + P D E Q
Sbjct: 55 TAKGITMKASEETNDMYAAVDAVVDKIERQLRRYKERIKAH-------KPATDTRERLVQ 107
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ + E E +++Q + ++R+KT L P++VEEA+ ++ +
Sbjct: 108 KSIVEA----------ESIEQQREPV-------IIRTKTFSL-KPMSVEEAVMQMDLLHK 149
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVP 458
F V+ E T+ + ++Y+R+ G YG+I P
Sbjct: 150 DFLVYTEAATENINVIYRRKDGNYGLIEP 178
[201][TOP]
>UniRef100_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Thermoanaerobacter RepID=B0K3A9_THEPX
Length = 181
Score = 62.4 bits (150), Expect = 3e-08
Identities = 45/144 (31%), Positives = 70/144 (48%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
+ R E+ +++Y +ID V DKI ++ K K K R G E + E Y +E
Sbjct: 61 IFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKL------KNRFGSNESIRFEIPPVY-EE 113
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K +EE+ + + R +P P++ EEAI + +GH+F+VF
Sbjct: 114 AK------GEEEEGSFEIVKTKR-FPIK-----------PMSPEEAILQMNLLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVIVP 458
TDT+ +VYKR+ G YG+I P
Sbjct: 156 TNADTDTINVVYKRKDGKYGLIEP 179
[202][TOP]
>UniRef100_C4W9L5 Ribosomal subunit interface protein n=1 Tax=Staphylococcus warneri
L37603 RepID=C4W9L5_STAWA
Length = 191
Score = 62.4 bits (150), Expect = 3e-08
Identities = 41/146 (28%), Positives = 73/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L++ +R E+ ++LYA +DL+ +K+ +++K K + + G D+E F
Sbjct: 60 LKDVTLRAEERHDDLYAGVDLITNKLERQVRKYKTRVNRKHRDRG--------DQEVFVA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E + + AE N ++RSK L P+ EEA+ + +GH
Sbjct: 112 EVQEAPPE----------EISGAEENNDNDIEIIRSKQFSLK-PMDSEEAVLQMNLLGHD 160
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVY+R+ G YG+I
Sbjct: 161 FFIFTDRETDGTSIVYRRKDGKYGLI 186
[203][TOP]
>UniRef100_Q0TND9 Ribosomal subunit interface protein n=6 Tax=Clostridium perfringens
RepID=Q0TND9_CLOP1
Length = 179
Score = 62.4 bits (150), Expect = 3e-08
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Frame = +3
Query: 21 NGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG----RAGPKEDVDEED 185
NG++ R E++ +++Y +IDLV +KI +++K K + + + P ED+ EE
Sbjct: 57 NGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRYDSLRFAHIDPIEDMKEEK 116
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
+ +K + D + P+ EEA+ +E +
Sbjct: 117 EAKIVKTKRFDVK---------------------------------PMGAEEAVLQMELI 143
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
GH F+VF++ T+ + +VYKR+ G YG+I P
Sbjct: 144 GHDFFVFQDPETNQLNVVYKRKDGNYGLIEP 174
[204][TOP]
>UniRef100_A3IC40 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. B14905
RepID=A3IC40_9BACI
Length = 183
Score = 62.4 bits (150), Expect = 3e-08
Identities = 44/146 (30%), Positives = 73/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++N +R E+ N++YAA+DL+ DK+ +++K K K + AG
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREGAG---------LYF 110
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ +DT L D+EE +++R+K L P+ EEA+ + +GH
Sbjct: 111 ATTQAVVDTTL-DEEEY--------------SIVRTKQFDLK-PMDQEEAVLQMNMLGHD 154
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FYVF + ++ IVYKR+ G YG+I
Sbjct: 155 FYVFTDAESNGTNIVYKRKDGKYGLI 180
[205][TOP]
>UniRef100_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
Length = 189
Score = 62.0 bits (149), Expect = 4e-08
Identities = 38/152 (25%), Positives = 72/152 (47%)
Frame = +3
Query: 3 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 182
T + V++ +A ++YA+ID + DK+ ++++ + + + R W GR E E
Sbjct: 60 TTLFINGAVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDR--WHGRLKNHEGARAE 117
Query: 183 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEA 362
Q ++ E + D + ++R+K + P++ EEA+ +E
Sbjct: 118 P-QPFVAEEEEDIE--------------------PRIVRTKQFQMK-PMSAEEAVLQMEL 155
Query: 363 VGHSFYVFREMTTDTVQIVYKRESGGYGVIVP 458
+ H F+VF T + +VY+R G YG+I P
Sbjct: 156 LDHDFFVFTNADTGDINVVYRRRDGNYGLIEP 187
[206][TOP]
>UniRef100_B8FYZ1 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Desulfitobacterium hafniense RepID=B8FYZ1_DESHD
Length = 175
Score = 62.0 bits (149), Expect = 4e-08
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD------ 176
L+ ++R E+ ++YA+IDLV +K+ ++ K + + R R +D +
Sbjct: 56 LQGMILRGEEESGDMYASIDLVVEKLERQIDKYRTRINKRM----RTKVLKDHEIEHPAL 111
Query: 177 -EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDA 353
E+D +E ++ K T+ P++VEEAI
Sbjct: 112 YEDDSEEVVRHKKFGTK---------------------------------PMSVEEAIMQ 138
Query: 354 LEAVGHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
+ VGH+FY F M T+ + +VY+R SG YG++ P+
Sbjct: 139 MNLVGHNFYAFTNMDTNVINVVYRRRSGDYGLLEPE 174
[207][TOP]
>UniRef100_B5EEZ7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacter bemidjiensis Bem RepID=B5EEZ7_GEOBB
Length = 182
Score = 62.0 bits (149), Expect = 4e-08
Identities = 40/151 (26%), Positives = 76/151 (50%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YA+ID V DKI +L++ KE+ + P D E Q
Sbjct: 55 TAKGITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHK-------PAPDARERQVQ 107
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ + E + EE Q ++++K+ + P++VEEA+ +E +
Sbjct: 108 KSIVEAQ------SIEEGAQAPV----------IIKTKSFSMK-PMSVEEAVMQMELLHK 150
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQM 464
F V+ E +T+ + +VY+R+ G YG+I P++
Sbjct: 151 DFLVYTESSTEKINVVYRRKDGNYGLISPEI 181
[208][TOP]
>UniRef100_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO
Length = 199
Score = 62.0 bits (149), Expect = 4e-08
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD-EEDFQEYLK 203
+++VE+ N+LY AID V D + K++K+K + + R K ++ E++ Q
Sbjct: 66 IIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQS----RTDKKARMEIEQNLQN--- 118
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
D + D E+ + + E + ++R+K L ++VEEA+ ++ +GHSF+V
Sbjct: 119 ---PDIKNLDLAEENESEIEE--KPDAPKIVRTKNFDLT-LMSVEEAMLQMQLLGHSFFV 172
Query: 384 FREMTTDTVQIVYKRESGGYGVI 452
FR D + ++Y+R+ G G+I
Sbjct: 173 FRNPDNDAISVLYERKDGDLGLI 195
[209][TOP]
>UniRef100_C5EVT1 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EVT1_9FIRM
Length = 187
Score = 62.0 bits (149), Expect = 4e-08
Identities = 41/149 (27%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ +R E++ ++Y +IDLV + I ++++ ++K I K+ Q
Sbjct: 67 VKGNTIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLID----------KKQAAISFSQA 116
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+++E + ++ D E Q ++++K + P EEA +E +GHS
Sbjct: 117 FIEE---EDEVQDDEIQ---------------IVKTKKFAIK-PTIPEEACLQMEMLGHS 157
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVF TD V +VYKR++G YG+I P+
Sbjct: 158 FYVFLNADTDQVNVVYKRKNGTYGLIEPE 186
[210][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 62.0 bits (149), Expect = 4e-08
Identities = 45/142 (31%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ +++YAAIDLV DK+ +++K K K + G PK + L+E
Sbjct: 60 LLRAEETHSDMYAAIDLVVDKVERQIRKHKTKVNRKLREKG--SPKTAFILTEPAATLEE 117
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
VK E++L+ ++R+K L P+ VEEAI ++ +GH+F+VF
Sbjct: 118 VK--------EDELE-------------LVRTKRFDLK-PMDVEEAILQMDMLGHNFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
T+ +VY R+ G YG+I
Sbjct: 156 TNADTNETNVVYGRKDGKYGLI 177
[211][TOP]
>UniRef100_B3XQU8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Lactobacillus reuteri 100-23 RepID=B3XQU8_LACRE
Length = 182
Score = 62.0 bits (149), Expect = 4e-08
Identities = 38/141 (26%), Positives = 73/141 (51%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R E+ N++Y +IDLV DK+ +++K K K V+ + ++ LK +
Sbjct: 65 LRAEETSNDMYGSIDLVTDKLERQIRKYKTK----------------VNRKSREKGLKNL 108
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
+ + D ++ + ++R+K V L P+ EEA+ ++ +GH+F++F+
Sbjct: 109 EFISSDNDGADEQDDEL---------KIVRTKQVSLK-PMDPEEAVLQMDMLGHNFFIFQ 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R G YG+I
Sbjct: 159 DAETNGTSIVYRRNDGRYGLI 179
[212][TOP]
>UniRef100_B0MGZ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MGZ9_9FIRM
Length = 176
Score = 62.0 bits (149), Expect = 4e-08
Identities = 41/149 (27%), Positives = 74/149 (49%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ ++R E ++Y +IDLV D + ++++ K + +S+ + G AG K++
Sbjct: 56 MKGHIIRAEQDSADMYVSIDLVIDILERQIRRYKTRLMSK-KYEG-AGLKQE-------- 105
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
DK+E + ++RSK + P+ VEEA ++ +GH+
Sbjct: 106 ----------FIDKDEDVDED--------EIRIIRSKKFAIK-PMDVEEACIQMDLLGHN 146
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F+VFR T V +VYKR+ YG+I P+
Sbjct: 147 FFVFRNADTFEVNVVYKRKGNTYGLIEPE 175
[213][TOP]
>UniRef100_A6BHR0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
13814 RepID=A6BHR0_9FIRM
Length = 178
Score = 62.0 bits (149), Expect = 4e-08
Identities = 44/149 (29%), Positives = 73/149 (48%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ G+VR E +++Y +IDLV + I +L+K K K ++R G +E D ED E
Sbjct: 56 VKGGLVRSEQESSDMYVSIDLVEEVIERQLRKYKNKLVAREQEGGNF-KQEFFDAEDNIE 114
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
E+K ++R+K P+ E+A +E +GH
Sbjct: 115 DDGEIK--------------------------IVRTKKFGFK-PMYPEDACVQMELLGHD 147
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVF +D V +VY+R++G +G+I P+
Sbjct: 148 FYVFCNAESDEVNVVYRRKNGTFGLIEPE 176
[214][TOP]
>UniRef100_P47995 Uncharacterized protein Sca_0400 n=1 Tax=Staphylococcus carnosus
subsp. carnosus TM300 RepID=Y400_STACT
Length = 188
Score = 62.0 bits (149), Expect = 4e-08
Identities = 38/146 (26%), Positives = 74/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L + +R E+ ++LYA IDL+ +K+ +++K K + + +++ + E F
Sbjct: 60 LNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRK--------KRKESEHEPFPA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ DK+++++ ++RSK L P+ EEA+ ++ +GH
Sbjct: 112 TPETPPETAVDHDKDDEIE-------------IIRSKQFSLK-PMDSEEAVLQMDLLGHD 157
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVY+R+ G YG+I
Sbjct: 158 FFIFNDRETDGTSIVYRRKDGKYGLI 183
[215][TOP]
>UniRef100_Q74KA6 Putative uncharacterized protein n=1 Tax=Lactobacillus johnsonii
RepID=Q74KA6_LACJO
Length = 181
Score = 61.6 bits (148), Expect = 6e-08
Identities = 42/142 (29%), Positives = 75/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++Y +ID V +K+ +++K K + I+R + +E ++ F E L+E
Sbjct: 64 VLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR-INRKS-------REKGLKDFFYEDLEE 115
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K + FD ++R+K + L P++ EEA+ ++ +GH F+VF
Sbjct: 116 EKKAPKEFD-------------------IVRNKHLDLK-PMSAEEAVLQMDLLGHDFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R G YG+I
Sbjct: 156 EDADTNGTSIVYRRNDGRYGLI 177
[216][TOP]
>UniRef100_C6E4W8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacter sp. M21 RepID=C6E4W8_GEOSM
Length = 182
Score = 61.6 bits (148), Expect = 6e-08
Identities = 40/150 (26%), Positives = 75/150 (50%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 191
T + ++ + N++YA+ID V DKI +L++ KE+ + P D E Q
Sbjct: 55 TAKGITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHK-------PAPDARERQVQ 107
Query: 192 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGH 371
+ + E + EE Q ++++K+ + P++VEEA+ +E +
Sbjct: 108 KSIVEAQ------SIEEGAQAPV----------IIKTKSFSMK-PMSVEEAVMQMELLHK 150
Query: 372 SFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
F V+ E +T+ + +VY+R+ G YG+I P+
Sbjct: 151 DFLVYTESSTEKINVVYRRKDGNYGLISPE 180
[217][TOP]
>UniRef100_C0QU53 Sigma 54 modulation protein n=1 Tax=Persephonella marina EX-H1
RepID=C0QU53_PERMH
Length = 188
Score = 61.6 bits (148), Expect = 6e-08
Identities = 38/145 (26%), Positives = 71/145 (48%)
Frame = +3
Query: 24 GVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLK 203
GV+ + N+LY+AID V D++ +L ++K + +E+ + K
Sbjct: 70 GVIHAWEESNDLYSAIDFVIDEVERQLVRLKARR-----------------KEERRRLAK 112
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
+M+ + EE ++R ++ + + L P+TVE+A LE +G F
Sbjct: 113 LKEMEKRTVTVEESIERP-----------LIVQEPMPLEKPLTVEDARMLLEEMGAFFLP 161
Query: 384 FREMTTDTVQIVYKRESGGYGVIVP 458
FR T V ++Y++++G YG+I+P
Sbjct: 162 FRNAETGEVNVIYRKKAGNYGLIIP 186
[218][TOP]
>UniRef100_B7GL70 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Anoxybacillus
flavithermus WK1 RepID=B7GL70_ANOFW
Length = 182
Score = 61.6 bits (148), Expect = 6e-08
Identities = 45/142 (31%), Positives = 69/142 (48%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +++YAAIDLV DK+ +++K K K K E +
Sbjct: 63 VLRAEERHDDMYAAIDLVVDKLERQIRKHKTKV----------NRKMREKEANGVTLTAT 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
V + T+ ++EE V+R+K L P+ EEAI + +GH+FYVF
Sbjct: 113 VPVATEEHEEEE--------------FEVVRTKRFSLK-PMDSEEAILQMNMLGHNFYVF 157
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
T+ +VYKR+ G YG+I
Sbjct: 158 INAETNRTNVVYKRKDGKYGLI 179
[219][TOP]
>UniRef100_Q3DA79 Ribosomal subunit interface protein n=2 Tax=Streptococcus
agalactiae RepID=Q3DA79_STRAG
Length = 184
Score = 61.6 bits (148), Expect = 6e-08
Identities = 39/141 (27%), Positives = 68/141 (48%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + ++E +
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK-----------------YREKIPAS 107
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
++ T F+ E ++R+K V L P+ VEEA+ +E +GH F+++
Sbjct: 108 QVFTTEFEAEPD--------EEAVSQRIVRTKNVNLK-PMDVEEALLQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ +T ++YKRE G G+I
Sbjct: 159 DAEDNTTNVLYKREDGELGLI 179
[220][TOP]
>UniRef100_Q3CZ63 Ribosomal subunit interface protein n=6 Tax=Streptococcus
agalactiae RepID=Q3CZ63_STRAG
Length = 184
Score = 61.6 bits (148), Expect = 6e-08
Identities = 39/141 (27%), Positives = 68/141 (48%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + ++E +
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK-----------------YREKIPAS 107
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
++ T F+ E ++R+K V L P+ VEEA+ +E +GH F+++
Sbjct: 108 QVFTTEFEAEPD--------EEAVSQRIVRTKNVNLK-PMDVEEALLQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ +T ++YKRE G G+I
Sbjct: 159 DAEDNTTNVLYKREDGELGLI 179
[221][TOP]
>UniRef100_C5QQC2 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis M23864:W1 RepID=C5QQC2_STAEP
Length = 191
Score = 61.6 bits (148), Expect = 6e-08
Identities = 40/146 (27%), Positives = 73/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L++ +R E+ ++LYA IDL+ +K+ +++K K + + G ++V + QE
Sbjct: 60 LKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRDRG----DQEVFVAEVQE 115
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
E + D + ++ ++RSK L P+ EEA+ + +GH
Sbjct: 116 ATPEEVSGAEEPDNDSDIE-------------IIRSKQFSLK-PMDSEEAVLQMNLLGHD 161
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVY+R+ G YG+I
Sbjct: 162 FFIFTDRETDGTSIVYRRKDGKYGLI 187
[222][TOP]
>UniRef100_C4VTZ9 Ribosome-associated protein Y n=1 Tax=Lactobacillus gasseri 202-4
RepID=C4VTZ9_9LACO
Length = 181
Score = 61.6 bits (148), Expect = 6e-08
Identities = 42/142 (29%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++Y +ID V +K+ +++K K + I+R + +E ++ F E L+E
Sbjct: 64 VLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR-INRKS-------REKGLKDFFYEDLEE 115
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K + FD ++R+K + L P+ EEA+ ++ +GH F+VF
Sbjct: 116 EKKTPKEFD-------------------IVRNKHLDLK-PMNAEEAVLQMDLLGHDFFVF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R G YG+I
Sbjct: 156 EDADTNGTSIVYRRNDGRYGLI 177
[223][TOP]
>UniRef100_C4FUX7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
RepID=C4FUX7_9FIRM
Length = 191
Score = 61.6 bits (148), Expect = 6e-08
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K +E
Sbjct: 69 VLRAEETNPDLYASIDLVVDKLERQVRKHKTK---------------------IHRKYRE 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPA-NVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
V D +D L Q +E P +++RSK + L P++ EEA+ + +GH F+V
Sbjct: 108 VHGDAGAYDA---LLNQASEPASEEPELDIVRSKRISLK-PMSSEEAVLQMNMLGHDFFV 163
Query: 384 FREMTTDTVQIVYKRESGGYGVI 452
+ + T+ IVY+R+ G YG+I
Sbjct: 164 YTDAETEEFSIVYRRKDGRYGLI 186
[224][TOP]
>UniRef100_C2E5C2 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
johnsonii ATCC 33200 RepID=C2E5C2_LACJO
Length = 196
Score = 61.6 bits (148), Expect = 6e-08
Identities = 42/142 (29%), Positives = 75/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++Y +ID V +K+ +++K K + I+R + +E ++ F E L+E
Sbjct: 79 VLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR-INRKS-------REKGLKDFFYEDLEE 130
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K + FD ++R+K + L P++ EEA+ ++ +GH F+VF
Sbjct: 131 EKKAPKEFD-------------------IVRNKHLDLK-PMSAEEAVLQMDLLGHDFFVF 170
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R G YG+I
Sbjct: 171 EDADTNGTSIVYRRNDGRYGLI 192
[225][TOP]
>UniRef100_Q042C8 Sigma 54 modulation protein / SSU ribosomal protein S30P n=2
Tax=Lactobacillus gasseri RepID=Q042C8_LACGA
Length = 196
Score = 61.6 bits (148), Expect = 6e-08
Identities = 42/142 (29%), Positives = 74/142 (52%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R ED +++Y +ID V +K+ +++K K + I+R + +E ++ F E L+E
Sbjct: 79 VLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR-INRKS-------REKGLKDFFYEDLEE 130
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
K + FD ++R+K + L P+ EEA+ ++ +GH F+VF
Sbjct: 131 EKKTPKEFD-------------------IVRNKHLDLK-PMNAEEAVLQMDLLGHDFFVF 170
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R G YG+I
Sbjct: 171 EDADTNGTSIVYRRNDGRYGLI 192
[226][TOP]
>UniRef100_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
RepID=A7VDW4_9CLOT
Length = 170
Score = 61.6 bits (148), Expect = 6e-08
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR---GAWPGRAGPKEDVDEED 185
++ ++R E +++Y +IDLV + I ++ + K+K I + A+ + +E+ DE+D
Sbjct: 51 MKGHIIRAEQVSDDMYVSIDLVLEVIERQVNRHKKKLIDKEQNAAYLQNSFVEEETDEDD 110
Query: 186 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAV 365
E+K ++R K + P+ E+A ++ +
Sbjct: 111 ------EIK--------------------------IVRCKKFAVK-PMYPEDACIQMDLL 137
Query: 366 GHSFYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
GH+FYVFR T+ V +VYKR+ YG+I P+
Sbjct: 138 GHNFYVFRNAETEEVNVVYKRKGNTYGLIEPE 169
[227][TOP]
>UniRef100_UPI00004C2450 COG1544: Ribosome-associated protein Y (PSrp-1) n=1
Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2450
Length = 182
Score = 61.2 bits (147), Expect = 7e-08
Identities = 41/141 (29%), Positives = 67/141 (47%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + +E
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH---------------------REK 103
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
Q+F E + + E++ I V+R+K V L P+ VEEA +E +GH F+++
Sbjct: 104 VPTGQVFTTEFEAE----EVDEIPEVQVVRTKNVTLK-PMDVEEARLQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ I+Y+RE G G+I
Sbjct: 159 DSENGATNILYRREDGNLGLI 179
[228][TOP]
>UniRef100_C9CNP3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Enterococcus casseliflavus EC10 RepID=C9CNP3_ENTCA
Length = 185
Score = 61.2 bits (147), Expect = 7e-08
Identities = 43/142 (30%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K I+R + P D D
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKSRETALVPPTDGD---------- 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
T+ D+E +++R+K + L P+ EEA+ + +GH+F++F
Sbjct: 113 -LFTTEANDEETNGS----------DLDIVRTKRLSLK-PMDSEEAVLQMNMLGHNFFIF 160
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R+ G YG+I
Sbjct: 161 EDAETNGTSIVYRRKDGKYGLI 182
[229][TOP]
>UniRef100_C9ACD7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus casseliflavus RepID=C9ACD7_ENTCA
Length = 180
Score = 61.2 bits (147), Expect = 7e-08
Identities = 43/142 (30%), Positives = 72/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K I+R + P D D
Sbjct: 59 VLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKSRETALVPPTDGD---------- 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
T+ D+E +++R+K + L P+ EEA+ + +GH+F++F
Sbjct: 108 -LFTTEANDEETNGS----------DLDIVRTKRLSLK-PMDSEEAVLQMNMLGHNFFIF 155
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R+ G YG+I
Sbjct: 156 EDAETNGTSIVYRRKDGKYGLI 177
[230][TOP]
>UniRef100_C9A0V6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Enterococcus gallinarum EG2 RepID=C9A0V6_ENTGA
Length = 185
Score = 61.2 bits (147), Expect = 7e-08
Identities = 42/142 (29%), Positives = 70/142 (49%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ +LYA+IDLV DK+ +++K K K + P
Sbjct: 64 VLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETALVAPDNG------------ 111
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
D D E+ + AEL+ ++R+K + L P+ EEA+ + +GH+F++F
Sbjct: 112 ---DLFTTDTNEE-ETNGAELD------IVRTKRLSLK-PMDSEEAVLQMNMLGHNFFIF 160
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ T+ IVY+R+ G YG+I
Sbjct: 161 EDAETNGTSIVYRRKDGKYGLI 182
[231][TOP]
>UniRef100_C2EGB2 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
salivarius ATCC 11741 RepID=C2EGB2_9LACO
Length = 184
Score = 61.2 bits (147), Expect = 7e-08
Identities = 38/142 (26%), Positives = 71/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ ++YA+IDLV DK+ +++K K K V+ + ++ K
Sbjct: 64 VLRAEETSPDMYASIDLVTDKLERQIRKYKTK----------------VNRKSREKGFKN 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ +KEE ++F ++R+K + L P+ EEA+ ++ +GH F+++
Sbjct: 108 FEFAPVADEKEEVEDKKF---------EIVRTKRLSLK-PMDSEEAVLQMDMLGHDFFIY 157
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ + IVY+R G YG+I
Sbjct: 158 EDAENGGINIVYRRRDGRYGLI 179
[232][TOP]
>UniRef100_C5VEF3 S30AE family protein n=2 Tax=Corynebacterium matruchotii
RepID=C5VEF3_9CORY
Length = 219
Score = 61.2 bits (147), Expect = 7e-08
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = +3
Query: 12 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK-AISRGAWPGRAGPKEDVDEEDF 188
T + + R E E++ YAA++ V ++ L+K+KE+ +IS G E +
Sbjct: 74 TGKGHIARAEAKEDSFYAALETVLSRMERSLRKVKERRSISLSGHRAPIGTGEAA--KGL 131
Query: 189 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVG 368
+ +V+ +D + ++ + P V+R+K V A+P++V++A+ +E VG
Sbjct: 132 VKEADKVQAAGSKYDHDPYAD----QVEDVLPGQVVRTKEHV-ANPMSVDDALSEMELVG 186
Query: 369 HSFYVFREMTTDTVQIVYKRESGGYGVI 452
H FY+F + +VY+R + YG+I
Sbjct: 187 HDFYLFINKENNQPSVVYRRHAFDYGLI 214
[233][TOP]
>UniRef100_C0CVD1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
DSM 15981 RepID=C0CVD1_9CLOT
Length = 176
Score = 61.2 bits (147), Expect = 7e-08
Identities = 37/149 (24%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ +R E++ ++Y +IDLV + I ++++ ++K I D++
Sbjct: 56 VKGNTIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLI---------------DKKQAAL 100
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ +D + ++E+ ++ ++++K + P EEA +E +GH+
Sbjct: 101 SFSQAFIDEEEDEQEDDIR-------------IVKTKKFAIK-PTIPEEACLQMEMLGHN 146
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVF TD V +VYKR++G YG+I P+
Sbjct: 147 FYVFLNSDTDQVNVVYKRKNGTYGLIEPE 175
[234][TOP]
>UniRef100_A3TQX9 Putative uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649
RepID=A3TQX9_9MICO
Length = 232
Score = 61.2 bits (147), Expect = 7e-08
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW------------PGRAG 158
++ VVR E + + YAA+D+ +K+ +L++ ++ + RG P G
Sbjct: 62 IKGPVVRAEACQEDKYAALDVALEKLLERLRRKHDRTVRRGRHASESVASATAFVPAETG 121
Query: 159 PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVE 338
P E + +D + D+ + +E+ V ++ P+++E
Sbjct: 122 PDEAAESDDVGPF-----GDSPIEVREK----------------------VHMSAPMSLE 154
Query: 339 EAIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
+A+ +E VGH FY+F + TD +VY+R YGV+
Sbjct: 155 QALREMELVGHDFYLFHDTETDKASVVYRRRGWSYGVL 192
[235][TOP]
>UniRef100_Q5HQX7 Uncharacterized protein SERP0419 n=3 Tax=Staphylococcus epidermidis
RepID=Y419_STAEQ
Length = 189
Score = 61.2 bits (147), Expect = 7e-08
Identities = 42/146 (28%), Positives = 74/146 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
L++ +R E+ ++LYA IDL+ +K+ +++K K + + G D++ F
Sbjct: 60 LKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRDRG--------DQDIFVA 111
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
++E + D E + N I ++RSK L P+ EEA+ + +GH
Sbjct: 112 EVQESTTNNHADDIESE--------NDI---EIIRSKQFSLK-PMDSEEAVLQMNLLGHD 159
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
F++F + TD IVY+R+ G YG+I
Sbjct: 160 FFIFTDRETDGTSIVYRRKDGKYGLI 185
[236][TOP]
>UniRef100_UPI00019E91B6 SSU ribosomal protein S30P n=1 Tax=Nakamurella multipartita DSM
44233 RepID=UPI00019E91B6
Length = 210
Score = 60.8 bits (146), Expect = 1e-07
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR--GAWP---GRAGPKEDVDEE 182
R VR E + N YAA+D K+ +L ++ ++ R G P A P+E + E
Sbjct: 54 RGPAVRAEASAENFYAALDAAVTKVETRLHRLHDRRRDRLHGRTPITAVAASPEEILGAE 113
Query: 183 DFQE-------YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEE 341
F L++ D+ R AE P ++R K A+PITV+E
Sbjct: 114 AFAPNGAVGTAVLEDEPTAAPAVDEISDDDRWGAEDGG--PGQIVRIKDHP-AEPITVDE 170
Query: 342 AIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
A+ +E VGH FY+F + T +VY+R YG+I
Sbjct: 171 ALLQMELVGHDFYLFNDSETGLSSVVYRRRGFDYGLI 207
[237][TOP]
>UniRef100_Q5WDF7 Ribosomal protein S30EA n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WDF7_BACSK
Length = 184
Score = 60.8 bits (146), Expect = 1e-07
Identities = 39/145 (26%), Positives = 77/145 (53%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ ++YAAID+V +K+ +++K K K +++ +E
Sbjct: 63 LLRGEEINADMYAAIDIVVEKLERQIRKYKTKVN--------------------RKFRQE 102
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ ++ E L+ + AE + + V+R+K L P+ EEAI ++ +GH+F+VF
Sbjct: 103 GSLKYMFKNELEPLRDEVAEDDEL---EVVRTKRFNLK-PMDAEEAILQMDLLGHNFFVF 158
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
+ + + +VY+R+ G YG+I P+
Sbjct: 159 SDAESGSTNVVYRRKDGKYGLIEPE 183
[238][TOP]
>UniRef100_Q1WSW6 Ribosome-associated factor Y n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSW6_LACS1
Length = 184
Score = 60.8 bits (146), Expect = 1e-07
Identities = 38/142 (26%), Positives = 71/142 (50%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
V+R E+ ++YA+IDLV DK+ +++K K K V+ + ++ K
Sbjct: 64 VLRAEETSPDMYASIDLVTDKLERQIRKYKTK----------------VNRKSREKGFKN 107
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+ +KEE ++F ++R+K + L P+ EEA+ ++ +GH F+++
Sbjct: 108 FEFAPVADEKEEVEDKKF---------EIVRTKRLSLK-PMDSEEAVLQMDMLGHDFFIY 157
Query: 387 REMTTDTVQIVYKRESGGYGVI 452
+ + IVY+R G YG+I
Sbjct: 158 EDAENGGIYIVYRRRDGRYGLI 179
[239][TOP]
>UniRef100_Q04E96 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Oenococcus oeni PSU-1 RepID=Q04E96_OENOB
Length = 190
Score = 60.8 bits (146), Expect = 1e-07
Identities = 41/141 (29%), Positives = 68/141 (48%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R E+ +++ Y A+DLV K+ +++K K + + G G DF E + V
Sbjct: 65 LRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRERGFKGI-------DFNEAIDPV 117
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
DT N +V+R K + L P+ +EEA+ +E + H F++F
Sbjct: 118 PSDT----------------NEDKKIDVIRRKNLSLK-PMDIEEAVLQMEMLDHDFFLFL 160
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
T+ + IVYKR+ G YG+I
Sbjct: 161 NSDTNQLDIVYKRDDGKYGLI 181
[240][TOP]
>UniRef100_C8XEB0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nakamurella multipartita DSM 44233
RepID=C8XEB0_9ACTO
Length = 219
Score = 60.8 bits (146), Expect = 1e-07
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR--GAWP---GRAGPKEDVDEE 182
R VR E + N YAA+D K+ +L ++ ++ R G P A P+E + E
Sbjct: 63 RGPAVRAEASAENFYAALDAAVTKVETRLHRLHDRRRDRLHGRTPITAVAASPEEILGAE 122
Query: 183 DFQE-------YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEE 341
F L++ D+ R AE P ++R K A+PITV+E
Sbjct: 123 AFAPNGAVGTAVLEDEPTAAPAVDEISDDDRWGAEDGG--PGQIVRIKDHP-AEPITVDE 179
Query: 342 AIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
A+ +E VGH FY+F + T +VY+R YG+I
Sbjct: 180 ALLQMELVGHDFYLFNDSETGLSSVVYRRRGFDYGLI 216
[241][TOP]
>UniRef100_A3DJE4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
Tax=Clostridium thermocellum RepID=A3DJE4_CLOTH
Length = 177
Score = 60.8 bits (146), Expect = 1e-07
Identities = 38/146 (26%), Positives = 70/146 (47%)
Frame = +3
Query: 24 GVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLK 203
G++R E+ ++YA+ID V D + ++++ K K + D +
Sbjct: 59 GLLRAEEDSPDMYASIDKVIDSLERQIRRNKTKLEKK--------------VHDGSLRFE 104
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
+K D ++E + + V+R+K + P+TVEEAI + +GH F++
Sbjct: 105 NIKFDDDEVEEEPKFE-------------VVRTKKFAIK-PMTVEEAILQMNLLGHQFFM 150
Query: 384 FREMTTDTVQIVYKRESGGYGVIVPQ 461
F T+ +VY+R+ G YG+I P+
Sbjct: 151 FSNAETNEANVVYRRKDGNYGLIEPE 176
[242][TOP]
>UniRef100_Q5XAQ7 Ribosome-associated factor Y n=10 Tax=Streptococcus pyogenes
RepID=RAFY_STRP6
Length = 182
Score = 60.8 bits (146), Expect = 1e-07
Identities = 41/141 (29%), Positives = 67/141 (47%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + +E
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH---------------------REK 103
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
Q+F E + + E++ I V+R+K V L P+ VEEA +E +GH F+++
Sbjct: 104 VPTGQVFTTEFEAE----EVDEIPEVQVVRTKNVTLK-PMDVEEARLQMELLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ I+Y+RE G G+I
Sbjct: 159 DSEDGATNILYRREDGNLGLI 179
[243][TOP]
>UniRef100_Q030Z0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Lactococcus lactis subsp. cremoris SK11
RepID=Q030Z0_LACLS
Length = 185
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/145 (27%), Positives = 73/145 (50%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
+N +R ED ++Y++ID V +K+ +++K K + + P A P V ++F
Sbjct: 61 KNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAVPTGQVFGDEF--- 114
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
+DT E+ + +++R+K V L P+ EEA+ ++ +GH F
Sbjct: 115 ---APLDTTDEVAEDHV-------------DIVRTKHVALK-PMDAEEAVLQMDMLGHDF 157
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
YVF + ++ +VY+R G YG+I
Sbjct: 158 YVFTDADSNGTHVVYRRTDGRYGLI 182
[244][TOP]
>UniRef100_A4FNI8 S30AE family protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338
RepID=A4FNI8_SACEN
Length = 231
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKI-----------------------KEKAISRGA 140
VR E A + YAA+D K+ +L+++ ++ + G
Sbjct: 67 VRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVHYGQHNPTSVAQATAAMADRTVVTGT 126
Query: 141 WPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLA 320
GR E +EE +E + ++ + E +++++ N P ++R K A
Sbjct: 127 SGGRTALLEAPEEE------QEEQEESAEYTTAEVPEQRWSSDNGYEPGRIVREKEHT-A 179
Query: 321 DPITVEEAIDALEAVGHSFYVFREMTTDTVQIVYKRESGGYGVI 452
+P+TV++A+ +E VGH FY+F + + +VY+R+ YGVI
Sbjct: 180 EPMTVDQALYQMELVGHDFYLFSDADSGRASVVYRRKGFDYGVI 223
[245][TOP]
>UniRef100_A2RIX0 Putative Sigma 54 modulation protein n=2 Tax=Lactococcus lactis
RepID=A2RIX0_LACLM
Length = 185
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/145 (27%), Positives = 73/145 (50%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 197
+N +R ED ++Y++ID V +K+ +++K K + + P A P V ++F
Sbjct: 61 KNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAVPTGQVFGDEF--- 114
Query: 198 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSF 377
+DT E+ + +++R+K V L P+ EEA+ ++ +GH F
Sbjct: 115 ---APLDTTDEVAEDHV-------------DIVRTKHVALK-PMDAEEAVLQMDMLGHDF 157
Query: 378 YVFREMTTDTVQIVYKRESGGYGVI 452
YVF + ++ +VY+R G YG+I
Sbjct: 158 YVFTDADSNGTHVVYRRTDGRYGLI 182
[246][TOP]
>UniRef100_C6SS06 Putative ribosome-associated protein n=2 Tax=Streptococcus mutans
RepID=C6SS06_STRMN
Length = 182
Score = 60.5 bits (145), Expect = 1e-07
Identities = 37/141 (26%), Positives = 67/141 (47%)
Frame = +3
Query: 30 VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEV 209
+R ED ++Y +IDLV DKI +++K K K + +E
Sbjct: 65 LRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH---------------------REK 103
Query: 210 KMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 389
K +F E + + E+ V+R+K + L P+ +EEA ++ +GH F+++
Sbjct: 104 KPAAHVFTAEFEAE----EMEEAPAIKVVRTKNITLK-PMDIEEARLQMDLLGHDFFIYT 158
Query: 390 EMTTDTVQIVYKRESGGYGVI 452
+ +T ++Y+RE G G+I
Sbjct: 159 DANDNTTNVLYRREDGNLGLI 179
[247][TOP]
>UniRef100_A7FQJ2 Ribosomal subunit interface protein n=7 Tax=Clostridium botulinum
RepID=A7FQJ2_CLOB1
Length = 175
Score = 60.5 bits (145), Expect = 1e-07
Identities = 37/145 (25%), Positives = 74/145 (51%)
Frame = +3
Query: 27 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKE 206
++R E+ ++YA+ID+V DK+ +++K K K + R G + + +Y E
Sbjct: 60 ILRGEETTEDMYASIDMVIDKLEGQVRKQKTK-LQRKIHDG------SLRFQYIPDYESE 112
Query: 207 VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVF 386
+TQ ++++K + P++ EEA+ +E +GH+F+V+
Sbjct: 113 ENKETQ----------------------IVKTKKFAM-KPMSSEEAVLQMELLGHNFFVY 149
Query: 387 REMTTDTVQIVYKRESGGYGVIVPQ 461
+ T+ V ++Y+R+ G YG+I P+
Sbjct: 150 QNADTEEVNVIYRRKDGNYGLIEPE 174
[248][TOP]
>UniRef100_A8S366 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S366_9CLOT
Length = 187
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/149 (26%), Positives = 75/149 (50%)
Frame = +3
Query: 15 LRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQE 194
++ +R E++ ++Y +IDLV + I ++++ ++K I K+ Q
Sbjct: 67 VKGNTIRAEESSTDMYVSIDLVEEIIERQIRRYRKKLID----------KKQAAISFSQA 116
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+++E + ++ D E Q ++++K + P EEA +E +GH+
Sbjct: 117 FIEE---EDEVQDDEIQ---------------IVKTKKFAIK-PTIPEEACLQMEMLGHN 157
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVIVPQ 461
FYVF TD V +VYKR++G YG+I P+
Sbjct: 158 FYVFLNADTDQVNVVYKRKNGTYGLIEPE 186
[249][TOP]
>UniRef100_Q9RVE7 Protein DR_1082 n=1 Tax=Deinococcus radiodurans RepID=UA82_DEIRA
Length = 191
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/143 (28%), Positives = 71/143 (49%)
Frame = +3
Query: 24 GVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLK 203
G++R E+ ++YAAID D + +L+K K + + + GR P E +
Sbjct: 65 GIIRAEEHHADMYAAIDKASDVLERQLRKFKTRYMKQRQ-EGRPEPLPGPAEAEVNAQGS 123
Query: 204 EVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 383
MD +++ +P ++R K L P++ E+A+ +EA+GH FYV
Sbjct: 124 GAAMD---------------DVSEFHP-EIVRQKRFELR-PMSAEDAVVQMEALGHDFYV 166
Query: 384 FREMTTDTVQIVYKRESGGYGVI 452
F+++ T +VY+R G YG+I
Sbjct: 167 FQDLQGQT-GVVYRRRDGHYGLI 188
[250][TOP]
>UniRef100_UPI0001AEDA7D hypothetical protein SalbJ_20815 n=1 Tax=Streptomyces albus J1074
RepID=UPI0001AEDA7D
Length = 230
Score = 60.1 bits (144), Expect = 2e-07
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE-EDFQE 194
R V+R E + + YAA+DL K+ A+++K +K SR GR E VD D
Sbjct: 65 RGPVIRAEASAADPYAALDLATAKLDARMRKEHDKRYSRRG-AGRISAAEVVDHIPDAAR 123
Query: 195 YLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHS 374
+ + T+ ++ + R + + ++R KT A P+++++A+ +E VGH
Sbjct: 124 LASDGTLITEQDEEAVKTTRMGSLEVQGEGPLIVREKTHAAA-PMSLDQALYEMELVGHD 182
Query: 375 FYVFREMTTDTVQIVYKRESGGYGVI 452
FY+F + T +VY+R + YGVI
Sbjct: 183 FYLFVDSETKEPAVVYRRHAYDYGVI 208