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[1][TOP] >UniRef100_Q6JDV2 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=Q6JDV2_CHLRE Length = 182 Score = 344 bits (882), Expect = 3e-93 Identities = 179/180 (99%), Positives = 179/180 (99%) Frame = +1 Query: 10 LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 189 LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE Sbjct: 1 LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 60 Query: 190 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 369 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE Sbjct: 61 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 120 Query: 370 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSG R Sbjct: 121 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 180 [2][TOP] >UniRef100_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=1 Tax=Chlamydomonas reinhardtii RepID=Q8LK21_CHLRE Length = 752 Score = 291 bits (746), Expect = 2e-77 Identities = 152/153 (99%), Positives = 152/153 (99%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN Sbjct: 598 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 657 Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT Sbjct: 658 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 717 Query: 451 IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549 IDVSGKLMEYGENLEMLMDGSREMAARTSSG R Sbjct: 718 IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 750 Score = 62.8 bits (151), Expect = 2e-08 Identities = 34/44 (77%), Positives = 36/44 (81%), Gaps = 7/44 (15%) Frame = +1 Query: 7 RLLGPTTSREAAESEDEDSFAGPSEDDLLA-------KAAGLPV 117 RLLGPTTSREAAESEDEDSFAGPSEDDLLA K++ LPV Sbjct: 275 RLLGPTTSREAAESEDEDSFAGPSEDDLLALEQEVSRKSSRLPV 318 [3][TOP] >UniRef100_Q6JDV1 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=Q6JDV1_CHLRE Length = 311 Score = 291 bits (746), Expect = 2e-77 Identities = 152/153 (99%), Positives = 152/153 (99%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN Sbjct: 157 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 216 Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT Sbjct: 217 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 276 Query: 451 IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549 IDVSGKLMEYGENLEMLMDGSREMAARTSSG R Sbjct: 277 IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 309 [4][TOP] >UniRef100_Q948V6 Chloroplast RNA polymerase sigma factor (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=Q948V6_CHLRE Length = 250 Score = 251 bits (640), Expect = 3e-65 Identities = 130/130 (100%), Positives = 130/130 (100%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN Sbjct: 115 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 174 Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT Sbjct: 175 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 234 Query: 451 IDVSGKLMEY 480 IDVSGKLMEY Sbjct: 235 IDVSGKLMEY 244 [5][TOP] >UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET20_9FIRM Length = 367 Score = 109 bits (273), Expect = 1e-22 Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 +AK +PV ++ +++T+R SLDTPIG E + D +EDE + + S S L+ Sbjct: 238 IAKKMNMPVAKIDEILKTSRDPVSLDTPIGEEE-DSQLGDFIEDESLLSPVDSASFSMLK 296 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E + L ERE V++LRFGLDDGK TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 297 EELEEAMASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKLR 354 [6][TOP] >UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L102_THERP Length = 509 Score = 106 bits (265), Expect = 1e-21 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LA A +P+ R++ L++ A+ SL+ P+G E T+ D +EDER A + + SL R Sbjct: 380 LAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEES-TLGDFLEDERAVAPLDAAALSLLR 438 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++++L L ERE RV+ +RFGL+DG+ +TLEE+G A VTRER+RQIEAKALRKLR Sbjct: 439 EQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLR 496 [7][TOP] >UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B4EB Length = 418 Score = 105 bits (263), Expect = 2e-21 Identities = 56/124 (45%), Positives = 86/124 (69%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ K G+ +V+ + + + SL+TPIG E + D +EDE + +++ Sbjct: 282 PTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 340 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S+ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 341 SNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKAL 400 Query: 430 RKLR 441 RKL+ Sbjct: 401 RKLK 404 [8][TOP] >UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1B6_HERA2 Length = 375 Score = 105 bits (262), Expect = 2e-21 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ +A GLP +V+ ++E AR SL+TP+G NE + D +ED+R + + Sbjct: 240 PSAEEI-GEALGLPADKVRRVLEVARQPVSLETPVG-NEGDSVLGDFIEDDRSSEPLDHA 297 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 ++ L R ++ +L +L ERE R++ LR+GL DGK TLEE+G +TRERIRQIEAK L Sbjct: 298 TEHLLREQLDEVLCKLDERERRIIELRYGLVDGKYRTLEEVGREFGITRERIRQIEAKVL 357 Query: 430 RKLR 441 RKLR Sbjct: 358 RKLR 361 [9][TOP] >UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10UV2_TRIEI Length = 386 Score = 105 bits (261), Expect = 3e-21 Identities = 57/123 (46%), Positives = 85/123 (69%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 253 PTEEEI-ATSMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 310 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370 Query: 433 KLR 441 KLR Sbjct: 371 KLR 373 [10][TOP] >UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NG03_ROSCS Length = 541 Score = 105 bits (261), Expect = 3e-21 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261 D+ L++A G+PV +V+ + +T+ SL+TP+G E + D +ED + A + S Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467 Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 LR +E +L +L ERE RV++LRFGL+DG TLEE+G+ VTRERIRQIE KALRKL Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527 Query: 439 R 441 R Sbjct: 528 R 528 [11][TOP] >UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQ16_ROSS1 Length = 541 Score = 105 bits (261), Expect = 3e-21 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261 D+ L++A G+PV +V+ + +T+ SL+TP+G E + D +ED + A + S Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467 Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 LR +E +L +L ERE RV++LRFGL+DG TLEE+G+ VTRERIRQIE KALRKL Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527 Query: 439 R 441 R Sbjct: 528 R 528 [12][TOP] >UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V564_9FIRM Length = 383 Score = 105 bits (261), Expect = 3e-21 Identities = 61/118 (51%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK G+ V RV +M+ A+ SL+TPIG E + D +EDE A E S L R Sbjct: 254 IAKEMGITVARVHEIMKIAQEPVSLETPIGEEE-DSHLGDFIEDEAAPAPAEAASFMLLR 312 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L +RE V+RLRFGL+DG+ TLEE+G++ VTRERIRQIEAKALRKLR Sbjct: 313 EQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLR 370 [13][TOP] >UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPM0_9SYNE Length = 404 Score = 103 bits (258), Expect = 6e-21 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 271 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 328 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388 Query: 433 KLR 441 KLR Sbjct: 389 KLR 391 [14][TOP] >UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM Length = 417 Score = 103 bits (257), Expect = 8e-21 Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ K G+ +V+ + + + SL+TPIG E + D +EDE + +++ Sbjct: 281 PSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 339 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 ++ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQIEAKAL Sbjct: 340 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 399 Query: 430 RKLR 441 RKL+ Sbjct: 400 RKLK 403 [15][TOP] >UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC 6301 RepID=Q5N3Q1_SYNP6 Length = 399 Score = 103 bits (256), Expect = 1e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383 Query: 433 KLR 441 KLR Sbjct: 384 KLR 386 [16][TOP] >UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTA9_9FIRM Length = 375 Score = 103 bits (256), Expect = 1e-20 Identities = 63/124 (50%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ A+A + V RV+ +M+ A+ SL+TPIG E + D +ED+ A E Sbjct: 241 PSPEEI-AEAMEISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAA 298 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S L + +E +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358 Query: 430 RKLR 441 RKLR Sbjct: 359 RKLR 362 [17][TOP] >UniRef100_C5EJF9 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJF9_9FIRM Length = 374 Score = 103 bits (256), Expect = 1e-20 Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+A LPV RV +M+ A+ SL+TPIG E + D ++D+ ++ Sbjct: 239 PTTEEIAARA-DLPVERVSEIMKMAQEPVSLETPIGEEE-DSHLGDFIQDDNVMVPQDAA 296 Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L ++ + +LL L ERE +V++LRFGLDDG+ TLEE+G NVTRERIRQIEAKAL Sbjct: 297 AFTLLHEQLMEVLLTLTEREQKVLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKAL 356 Query: 430 RKLR 441 RKLR Sbjct: 357 RKLR 360 [18][TOP] >UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus PCC 7942 RepID=RPOD1_SYNE7 Length = 399 Score = 103 bits (256), Expect = 1e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383 Query: 433 KLR 441 KLR Sbjct: 384 KLR 386 [19][TOP] >UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NHG5_GLOVI Length = 400 Score = 102 bits (255), Expect = 1e-20 Identities = 56/123 (45%), Positives = 84/123 (68%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 267 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDKVA 324 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+EA+L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384 Query: 433 KLR 441 KLR Sbjct: 385 KLR 387 [20][TOP] >UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ Length = 370 Score = 102 bits (255), Expect = 1e-20 Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267 +AK G+ +V+ +M+ A+ SL+TPIG E + D VED + +A EE LR Sbjct: 241 IAKEMGISEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFVEDPDAKAPVEEASYTLLR 299 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 300 EQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357 [21][TOP] >UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA Length = 361 Score = 102 bits (255), Expect = 1e-20 Identities = 66/133 (49%), Positives = 83/133 (62%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A +PV RV+ + + A+ SL+TPIG E + D +EDE A E S L R Sbjct: 232 IAHEMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAQAPAEAASFMLLR 290 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E +L L RE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 291 EQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHP 350 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 351 S--RSKKLKDYLE 361 [22][TOP] >UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TG57_HELMI Length = 371 Score = 102 bits (255), Expect = 1e-20 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L + Sbjct: 242 IAKEMDIPVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 300 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 301 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 358 [23][TOP] >UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JGK3_MICAN Length = 416 Score = 102 bits (255), Expect = 1e-20 Identities = 57/123 (46%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [24][TOP] >UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis RepID=P77870_HELMO Length = 333 Score = 102 bits (255), Expect = 1e-20 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L + Sbjct: 204 IAKEMDIPVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 262 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 263 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 320 [25][TOP] >UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820 RepID=B1PVV9_MICAE Length = 416 Score = 102 bits (255), Expect = 1e-20 Identities = 57/123 (46%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [26][TOP] >UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YBI5_MICAE Length = 416 Score = 102 bits (255), Expect = 1e-20 Identities = 57/123 (46%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [27][TOP] >UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa RepID=RPOD_MICAE Length = 416 Score = 102 bits (255), Expect = 1e-20 Identities = 57/123 (46%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [28][TOP] >UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9313 RepID=Q7V698_PROMM Length = 461 Score = 102 bits (254), Expect = 2e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 328 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 385 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ VTRERIRQIEAKALR Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 446 KLRHP--NRNGVLKEY 459 [29][TOP] >UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9303 RepID=A2C7M0_PROM3 Length = 444 Score = 102 bits (254), Expect = 2e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 311 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 368 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ VTRERIRQIEAKALR Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 429 KLRHP--NRNGVLKEY 442 [30][TOP] >UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZA7_9CLOT Length = 405 Score = 102 bits (254), Expect = 2e-20 Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIG---GNELGPTVKDSVEDEREAADEEFGSDS 261 LA+A G+ RV+ L++T+ SL+TP+G G+ LG V D+ D E E Sbjct: 276 LAEAVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENV---L 332 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR ++++ML L ERE +V++LRFGL++G+ TLEE+G NVTRERIRQIE ALRKLR Sbjct: 333 LREEIDSMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLR 392 [31][TOP] >UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQM8_9BACE Length = 448 Score = 102 bits (254), Expect = 2e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV RV+ + + ++ SL+TPIG E LG ++D D EE S Sbjct: 319 IAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAEEAASTI 375 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L ERE +V+RLRFGLDDG+ TLEE+G NVTRERIRQIEAKALRKLR Sbjct: 376 LKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLR 435 [32][TOP] >UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328 RepID=B5VWQ7_SPIMA Length = 387 Score = 102 bits (254), Expect = 2e-20 Identities = 55/123 (44%), Positives = 84/123 (68%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 254 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 311 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371 Query: 433 KLR 441 KLR Sbjct: 372 KLR 374 [33][TOP] >UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YTZ3_9CYAN Length = 391 Score = 102 bits (254), Expect = 2e-20 Identities = 55/123 (44%), Positives = 84/123 (68%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375 Query: 433 KLR 441 KLR Sbjct: 376 KLR 378 [34][TOP] >UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803 RepID=RPOD_SYNY3 Length = 425 Score = 102 bits (254), Expect = 2e-20 Identities = 57/123 (46%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 292 PTEEEIAEKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 349 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 350 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 409 Query: 433 KLR 441 KLR Sbjct: 410 KLR 412 [35][TOP] >UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=Q9L4T2_NOSP7 Length = 389 Score = 102 bits (253), Expect = 2e-20 Identities = 55/123 (44%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 256 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 313 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373 Query: 433 KLR 441 KLR Sbjct: 374 KLR 376 [36][TOP] >UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HPM3_CYAP4 Length = 378 Score = 102 bits (253), Expect = 2e-20 Identities = 54/123 (43%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 245 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 302 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362 Query: 433 KLR 441 KLR Sbjct: 363 KLR 365 [37][TOP] >UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGG2_ROSCS Length = 405 Score = 102 bits (253), Expect = 2e-20 Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Frame = +1 Query: 4 PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177 P +G T +R S G P+ D++ A G+PV +V+ ++E AR SL+TPI Sbjct: 246 PVHVGETINRVMRTSNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 304 Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354 G E + D +ED + A E S LR +++ L +LPERE R+++LR+GL DG Sbjct: 305 GP-EGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPERERRIIQLRYGLYDGHY 363 Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441 TLEE+G +TRERIRQIEA+ LRKLR Sbjct: 364 RTLEEVGREFGITRERIRQIEARVLRKLR 392 [38][TOP] >UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=C4EU48_9BACT Length = 387 Score = 102 bits (253), Expect = 2e-20 Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249 PS +++ A+ G+ V RV+ + + A+ SL+TPIG E + D +ED + + DE Sbjct: 253 PSAEEI-AQEMGVTVDRVEEIQKIAQEPVSLETPIGEEE-DSQLGDFLEDKDLPSPDEAA 310 Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + LR +E ML +L +RE V+RLRFGL+DG TLEE+G VTRERIRQIEAKAL Sbjct: 311 ANQILREQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKAL 370 Query: 430 RKLR 441 RKLR Sbjct: 371 RKLR 374 [39][TOP] >UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZJC3_NODSP Length = 391 Score = 102 bits (253), Expect = 2e-20 Identities = 55/123 (44%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375 Query: 433 KLR 441 KLR Sbjct: 376 KLR 378 [40][TOP] >UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae RepID=RPOD_ANASP Length = 390 Score = 102 bits (253), Expect = 2e-20 Identities = 55/123 (44%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 257 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 314 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374 Query: 433 KLR 441 KLR Sbjct: 375 KLR 377 [41][TOP] >UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JS52_SYNJA Length = 404 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 82/123 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E E E +E Sbjct: 271 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESEGETPEERVA 328 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E++L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388 Query: 433 KLR 441 KLR Sbjct: 389 KLR 391 [42][TOP] >UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV7_CYAP7 Length = 376 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 243 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 300 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 301 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 360 Query: 433 KLR 441 KLR Sbjct: 361 KLR 363 [43][TOP] >UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WS32_CYAA5 Length = 416 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [44][TOP] >UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C7J7_CROWT Length = 414 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 281 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 338 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 339 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 398 Query: 433 KLR 441 KLR Sbjct: 399 KLR 401 [45][TOP] >UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W0Y8_9CYAN Length = 380 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 84/123 (68%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 247 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 304 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364 Query: 433 KLR 441 KLR Sbjct: 365 KLR 367 [46][TOP] >UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUJ5_9CHRO Length = 377 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 244 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 301 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 302 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 361 Query: 433 KLR 441 KLR Sbjct: 362 KLR 364 [47][TOP] >UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RMR2_9CLOT Length = 378 Score = 101 bits (252), Expect = 3e-20 Identities = 58/124 (46%), Positives = 85/124 (68%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ LPV RV +M+ ++ SL+TPIG E + D ++D+ ++ Sbjct: 243 PTTEEIAARL-DLPVERVSEIMKMSQEPVSLETPIGEEE-DSHLGDFIQDDNVLVPQDAA 300 Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L ++ + +LL L ERE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 301 AFTLLHEQLMEVLLTLTEREQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKAL 360 Query: 430 RKLR 441 RKLR Sbjct: 361 RKLR 364 [48][TOP] >UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISY9_9CHRO Length = 416 Score = 101 bits (252), Expect = 3e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400 Query: 433 KLR 441 KLR Sbjct: 401 KLR 403 [49][TOP] >UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DL79_THEEB Length = 418 Score = 101 bits (251), Expect = 4e-20 Identities = 55/123 (44%), Positives = 82/123 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 285 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 342 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402 Query: 433 KLR 441 KLR Sbjct: 403 KLR 405 [50][TOP] >UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus RepID=Q7VD88_PROMA Length = 438 Score = 101 bits (251), Expect = 4e-20 Identities = 60/136 (44%), Positives = 89/136 (65%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E + + Sbjct: 305 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 362 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 363 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 422 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 423 KLRHP--NRNGVLKEY 436 [51][TOP] >UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U5C4_SYNPX Length = 471 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 338 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 395 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 396 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 455 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 456 KLRHP--NRNGVLKEY 469 [52][TOP] >UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902 RepID=Q3AWQ6_SYNS9 Length = 451 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 436 KLRHP--NRNGVLKEY 449 [53][TOP] >UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605 RepID=Q3ALS7_SYNSC Length = 435 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 302 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 359 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 360 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 419 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 420 KLRHP--NRNGVLKEY 433 [54][TOP] >UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311 RepID=Q0I8I7_SYNS3 Length = 440 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 307 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 364 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 365 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 424 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 425 KLRHP--NRNGVLKEY 438 [55][TOP] >UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRZ0_CLOPH Length = 371 Score = 101 bits (251), Expect = 4e-20 Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE +L A A LP+ +V+ +++ + SLDTPIG E + D ++D+ E+ Sbjct: 236 PSEQEL-ADAMNLPIEKVREILKVSADPISLDTPIG-EEDDSHLGDFIKDDTIMGPEDAA 293 Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S ++ D + LL+ L ERE RV+ LRFGL DG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 294 SYAVLQDQISKLLDTLTEREQRVLILRFGLQDGRSRTLEEVGKEFNVTRERIRQIEAKAL 353 Query: 430 RKLR 441 RKLR Sbjct: 354 RKLR 357 [56][TOP] >UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BEB7_PROM4 Length = 425 Score = 101 bits (251), Expect = 4e-20 Identities = 60/136 (44%), Positives = 89/136 (65%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E + + Sbjct: 292 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 349 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 350 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 409 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 410 KLRHP--NRNGVLKEY 423 [57][TOP] >UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803 RepID=A5GJC2_SYNPW Length = 450 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 317 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 374 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 375 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 434 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 435 KLRHP--NRNGVLKEY 448 [58][TOP] >UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107 RepID=Q05YJ7_9SYNE Length = 451 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 436 KLRHP--NRNGVLKEY 449 [59][TOP] >UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05RP2_9SYNE Length = 479 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 346 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 403 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 404 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 463 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 464 KLRHP--NRNGVLKEY 477 [60][TOP] >UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CLH5_9SYNE Length = 458 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 325 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 382 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 383 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 442 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 443 KLRHP--NRNGVLKEY 456 [61][TOP] >UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5ILG7_9CHRO Length = 503 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 370 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 427 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 428 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 487 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 488 KLRHP--NRNGVLKEY 501 [62][TOP] >UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CRY9_SYNPV Length = 447 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 314 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 371 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 372 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 431 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 432 KLRHP--NRNGVLKEY 445 [63][TOP] >UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z5L5_9SYNE Length = 456 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 323 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 380 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 381 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 440 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 441 KLRHP--NRNGVLKEY 454 [64][TOP] >UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YZH3_9SYNE Length = 469 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 336 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 393 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 394 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 453 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 454 KLRHP--NRNGVLKEY 467 [65][TOP] >UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora RepID=B1X5Q2_PAUCH Length = 460 Score = 101 bits (251), Expect = 4e-20 Identities = 59/136 (43%), Positives = 91/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 327 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 384 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 385 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 444 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 445 KLRHP--NRNGVLKEY 458 [66][TOP] >UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp. pastoris str. CCMP1986 RepID=Q7V2I0_PROMP Length = 396 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 263 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 320 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 321 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 380 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 381 KLRHP--NRNGVLKEY 394 [67][TOP] >UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67RX0_SYMTH Length = 388 Score = 100 bits (250), Expect = 5e-20 Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A +PV RV+ + + A+ SL+TPIG E + D +ED+ A E S +L + Sbjct: 259 IAAVMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFTLLK 317 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 318 EQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHP 377 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 378 S--RSKKLKDYLE 388 [68][TOP] >UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=Q59965_SYNP2 Length = 375 Score = 100 bits (250), Expect = 5e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A+ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 242 PTEEEI-AERMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 299 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359 Query: 433 KLR 441 KLR Sbjct: 360 KLR 362 [69][TOP] >UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q31C37_PROM9 Length = 393 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 378 KLRHP--NRNGVLKEY 391 [70][TOP] >UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9215 RepID=A8G3L2_PROM2 Length = 393 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 378 KLRHP--NRNGVLKEY 391 [71][TOP] >UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9301 RepID=A3PBM1_PROM0 Length = 394 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 379 KLRHP--NRNGVLKEY 392 [72][TOP] >UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9515 RepID=A2BVF8_PROM5 Length = 397 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 264 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 321 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 322 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 381 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 382 KLRHP--NRNGVLKEY 395 [73][TOP] >UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. AS9601 RepID=A2BPX8_PROMS Length = 394 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 379 KLRHP--NRNGVLKEY 392 [74][TOP] >UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece RepID=C7QR23_CYAP0 Length = 379 Score = 100 bits (250), Expect = 5e-20 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E Sbjct: 246 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGENPEDEVS 303 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 304 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 363 Query: 433 KLR 441 KLR Sbjct: 364 KLR 366 [75][TOP] >UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9202 RepID=B9P0P2_PROMA Length = 393 Score = 100 bits (250), Expect = 5e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 378 KLRHP--NRNGVLKEY 391 [76][TOP] >UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3P6_9FIRM Length = 415 Score = 100 bits (250), Expect = 5e-20 Identities = 53/124 (42%), Positives = 86/124 (69%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ + G+ +V+ + + + SL+TPIG E + D +EDE + +++ Sbjct: 279 PTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGVMSPDDYA 337 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 ++ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQIEAKAL Sbjct: 338 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 397 Query: 430 RKLR 441 RKL+ Sbjct: 398 RKLK 401 [77][TOP] >UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. NATL2A RepID=Q46GS6_PROMT Length = 420 Score = 100 bits (249), Expect = 7e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 403 KLRHP--NRNGVLKEY 416 [78][TOP] >UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDC4_ACAM1 Length = 371 Score = 100 bits (249), Expect = 7e-20 Identities = 54/123 (43%), Positives = 82/123 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 238 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 295 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355 Query: 433 KLR 441 KLR Sbjct: 356 KLR 358 [79][TOP] >UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3U6_PELTS Length = 363 Score = 100 bits (249), Expect = 7e-20 Identities = 60/124 (48%), Positives = 80/124 (64%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249 PS +++ AK + +V+ +++ A+ SL+TPIG E + D +ED E A EE Sbjct: 229 PSPEEI-AKEMNITEDKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDHEARAPAEEA 286 Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 LR ++ +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK L Sbjct: 287 SFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 346 Query: 430 RKLR 441 RKLR Sbjct: 347 RKLR 350 [80][TOP] >UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. NATL1A RepID=A2C0V5_PROM1 Length = 420 Score = 100 bits (249), Expect = 7e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++ Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 403 KLRHP--NRNGVLKEY 416 [81][TOP] >UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT RepID=A0Q1P4_CLONN Length = 368 Score = 100 bits (249), Expect = 7e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355 [82][TOP] >UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRR6_CLOBO Length = 368 Score = 100 bits (249), Expect = 7e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355 [83][TOP] >UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BDC8_CLOBO Length = 368 Score = 100 bits (249), Expect = 7e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355 [84][TOP] >UniRef100_A8SUG1 RNA polymerase sigma factor n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUG1_9FIRM Length = 399 Score = 100 bits (249), Expect = 7e-20 Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 4/121 (3%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKD-SVEDEREAADEEFGSD 258 + + GLP RVQ +M+ A+ SL+TPIG E LG ++D S+ EA ++ Sbjct: 269 VGEVMGLPKERVQEIMKIAQEPVSLETPIGEEEDSHLGDFIQDESIPTPVEATNQTL--- 325 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L ++ ++ L ERE RV++LRFG DDG+ TLEE+G+ NVTRERIRQIEAKALRKL Sbjct: 326 -LHEQLDDVVSTLTEREQRVIKLRFGWDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKL 384 Query: 439 R 441 R Sbjct: 385 R 385 [85][TOP] >UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q98RZ3_GUITH Length = 460 Score = 100 bits (249), Expect = 7e-20 Identities = 51/123 (41%), Positives = 85/123 (69%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ AK + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E Sbjct: 291 PTEEEI-AKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVE 349 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R Sbjct: 350 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 409 Query: 433 KLR 441 KLR Sbjct: 410 KLR 412 [86][TOP] >UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri RepID=A5N6R2_CLOK5 Length = 354 Score = 100 bits (248), Expect = 9e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 225 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 281 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 282 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 341 [87][TOP] >UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307 RepID=A5GSD3_SYNR3 Length = 401 Score = 100 bits (248), Expect = 9e-20 Identities = 59/136 (43%), Positives = 90/136 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E D++ Sbjct: 268 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPDQDVA 325 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 + LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKAL Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385 Query: 433 KLRVKTIDVSGKLMEY 480 KLR + +G L EY Sbjct: 386 KLRHP--NRNGVLKEY 399 [88][TOP] >UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTX7_9CLOT Length = 361 Score = 100 bits (248), Expect = 9e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348 [89][TOP] >UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum RepID=A5I618_CLOBH Length = 361 Score = 100 bits (248), Expect = 9e-20 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348 [90][TOP] >UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q8S9D0_GUITH Length = 490 Score = 100 bits (248), Expect = 9e-20 Identities = 50/123 (40%), Positives = 85/123 (69%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A+ + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426 Query: 433 KLR 441 KLR Sbjct: 427 KLR 429 [91][TOP] >UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP Length = 485 Score = 100 bits (248), Expect = 9e-20 Identities = 50/123 (40%), Positives = 85/123 (69%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ A+ + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426 Query: 433 KLR 441 KLR Sbjct: 427 KLR 429 [92][TOP] >UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum RepID=RPOD_CLOAB Length = 378 Score = 100 bits (248), Expect = 9e-20 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A + Sbjct: 249 IAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPADAAAFRM 305 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 306 LKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 365 [93][TOP] >UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWU4_SYNWW Length = 358 Score = 99.8 bits (247), Expect = 1e-19 Identities = 63/135 (46%), Positives = 85/135 (62%), Gaps = 3/135 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +A+ + V RV +M+ A+ SL+TPIG + LG + D +E E+ +E Sbjct: 229 VAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITD---EEAESPEESASFVL 285 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR ++ +L L ERE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 286 LREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLR 345 Query: 442 VKTIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 346 HPS--RSKKLKDYIE 358 [94][TOP] >UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZEX0_EUBR3 Length = 434 Score = 99.8 bits (247), Expect = 1e-19 Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 3/141 (2%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243 PS +++ AK +PV RV+ +++ ++ SL+TPIG E LG +KD D + Sbjct: 300 PSPEEI-AKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKD---DNVPVPAD 355 Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423 L+ +E +L L ERE +V+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAK Sbjct: 356 AAAFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAK 415 Query: 424 ALRKLRVKTIDVSGKLMEYGE 486 ALRKLR + S KL +Y E Sbjct: 416 ALRKLRHPS--RSRKLKDYLE 434 [95][TOP] >UniRef100_B8GCU9 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GCU9_CHLAD Length = 398 Score = 99.8 bits (247), Expect = 1e-19 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Frame = +1 Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180 P LG T +R ++A + S D LA G+ +++ L TA+ SL TP+G Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296 Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357 E T+ D + D AD+ S LR + A L +L ERE RV+ LR+GL DG+ Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQPR 355 Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477 TLEE+G+A VTRER+RQIE KALRKLR + GKL++ Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392 [96][TOP] >UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp. YO3AOP1 RepID=B2V7P9_SULSY Length = 590 Score = 99.8 bits (247), Expect = 1e-19 Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267 +AK AG+P +V+ ++ T++ SL+TPIG +E + D +ED+ + E+ +LR Sbjct: 459 IAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESH-LGDFIEDKTVLSPEQHMLKQALR 517 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+R RFGL+D E TLE++G+ VTRERIRQIEAKALRKLR Sbjct: 518 LQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575 [97][TOP] >UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V244_ROSS1 Length = 401 Score = 99.8 bits (247), Expect = 1e-19 Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 3/149 (2%) Frame = +1 Query: 4 PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177 P +G T +R S G P+ D++ A G+PV +V+ ++E AR SL+TPI Sbjct: 242 PVHVGETINRVMRASNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 300 Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354 G E + D +ED + + S LR +++ L +LPERE R+++LR+GL DG Sbjct: 301 G-TEGDTVLADFIEDGKGVTPMDSASHHILREQIDSALEKLPERERRIIQLRYGLYDGHY 359 Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441 TLEE+G +TRERIRQIEA+ LRKLR Sbjct: 360 RTLEEVGREFGITRERIRQIEARVLRKLR 388 [98][TOP] >UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC 27405 RepID=A3DDV0_CLOTH Length = 358 Score = 99.8 bits (247), Expect = 1e-19 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ ++ SL+TPIG E LG + D D+ A E Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345 [99][TOP] >UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM Length = 358 Score = 99.8 bits (247), Expect = 1e-19 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +M+ ++ SL+TPIG E LG + D D+ A E Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345 [100][TOP] >UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q7U2_9THEO Length = 357 Score = 99.8 bits (247), Expect = 1e-19 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+ Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344 [101][TOP] >UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9 RepID=C6PMA8_9THEO Length = 357 Score = 99.8 bits (247), Expect = 1e-19 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+ Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344 [102][TOP] >UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter RepID=B0K6Y0_THEPX Length = 357 Score = 99.8 bits (247), Expect = 1e-19 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+ Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344 [103][TOP] >UniRef100_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 99.8 bits (247), Expect = 1e-19 Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 3/126 (2%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243 P+E+++ AK LPV +V+ +M+ + SLDTPIG + LG +KD D ++ Sbjct: 274 PTEEEI-AKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDFIKD---DTIMGPED 329 Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423 L++ ++ +L L ERE RV+ LRFGL DG+ TLEE+G+ NVTRERIRQIEAK Sbjct: 330 AAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAK 389 Query: 424 ALRKLR 441 ALRKLR Sbjct: 390 ALRKLR 395 [104][TOP] >UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EE25_9CLOT Length = 372 Score = 99.8 bits (247), Expect = 1e-19 Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A+ +PV +V+ +M ++ SL+TPIG E + D + D+ A E S +L R Sbjct: 243 IAEELDMPVDKVREIMRVSQEPVSLETPIGEEE-DSHLSDFIPDDDAPAPAEAASHTLLR 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + +L L ERE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 302 EQLGDVLGTLTEREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 359 [105][TOP] >UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB Length = 403 Score = 99.4 bits (246), Expect = 2e-19 Identities = 54/123 (43%), Positives = 82/123 (66%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++ Sbjct: 270 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDRVA 327 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 LR D+E++L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387 Query: 433 KLR 441 KLR Sbjct: 388 KLR 390 [106][TOP] >UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ36_ANATD Length = 417 Score = 99.4 bits (246), Expect = 2e-19 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E Sbjct: 288 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 344 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L ERE +V++LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 345 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 404 [107][TOP] >UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I6N1_CLOCE Length = 359 Score = 99.4 bits (246), Expect = 2e-19 Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%) Frame = +1 Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249 + D +AK G+ V +V+ +M+ ++ SL+TPIG E LG + D D+ A E Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282 Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 283 AFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342 Query: 430 RKLR 441 RKLR Sbjct: 343 RKLR 346 [108][TOP] >UniRef100_A9WAH7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WAH7_CHLAA Length = 398 Score = 99.4 bits (246), Expect = 2e-19 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Frame = +1 Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180 P LG T +R ++A + S D LA G+ +++ L TA+ SL TP+G Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296 Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357 E T+ D + D AD+ S LR + A L +L ERE RV+ LR+GL DG+ Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQITAALDQLSERERRVLELRYGLVDGQPR 355 Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477 TLEE+G+A VTRER+RQIE KALRKLR + GKL++ Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392 [109][TOP] >UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4B0_HERA2 Length = 400 Score = 99.4 bits (246), Expect = 2e-19 Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSD 258 D+ LA+A L V +V+ + +T+ SL+TP+G E + D + DE+ EA + Sbjct: 268 DEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEE-DSQLGDFLPDEKLEAPSDAASHQ 326 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 LR + +L +L ERE RV++LRFGL+DG + TLEE+G+ VTRERIRQIE KALRKL Sbjct: 327 MLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKL 386 Query: 439 R 441 R Sbjct: 387 R 387 [110][TOP] >UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLT9_THEM4 Length = 370 Score = 99.4 bits (246), Expect = 2e-19 Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK G PV +V+ +++ A+ SL+ P+G +E TV D V DE A+ ++ L R Sbjct: 236 LAKIIGKPVEKVEEILQAAKETTSLEAPVGEDE-DSTVGDFVADESIASPKKEAMRMLIR 294 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E +L L +RE V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 295 EEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLR 352 [111][TOP] >UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XHW4_CALS8 Length = 411 Score = 99.4 bits (246), Expect = 2e-19 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E Sbjct: 282 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 338 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L ERE +V++LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 339 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 398 [112][TOP] >UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TCQ2_MYCGI Length = 329 Score = 99.4 bits (246), Expect = 2e-19 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+ Sbjct: 197 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315 Query: 439 R 441 R Sbjct: 316 R 316 [113][TOP] >UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 99.4 bits (246), Expect = 2e-19 Identities = 56/127 (44%), Positives = 84/127 (66%), Gaps = 1/127 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ + +V+ + + A SL+TPIG E + D +ED+ + +E+ Sbjct: 322 PTAEEIAAEMENITPEKVREIQKIALDPVSLETPIG-EEDDSHLGDFIEDKDALSPDEYA 380 Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 ++ L + M+LE L ERE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440 Query: 430 RKLRVKT 450 RKL+ T Sbjct: 441 RKLKHPT 447 [114][TOP] >UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFS3_9CLOT Length = 359 Score = 99.4 bits (246), Expect = 2e-19 Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%) Frame = +1 Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249 + D +AK G+ V +V+ +M+ ++ SL+TPIG E LG + D D+ A E Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282 Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 283 AFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342 Query: 430 RKLR 441 RKLR Sbjct: 343 RKLR 346 [115][TOP] >UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBC2_9FIRM Length = 398 Score = 99.4 bits (246), Expect = 2e-19 Identities = 56/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234 +D P+ +++ AK + +V+ + + A SL+TPIG E + D +ED+ Sbjct: 255 QDLGRDPTAEEIAAKMENISPEKVREIQKIALEPVSLETPIG-EEDDSHLGDFIEDKEAL 313 Query: 235 ADEEFGSDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411 + +E+ ++ L ++++ +L L ERE +V+RLRFGL DG+ TLEE+G+ NVTRERIRQ Sbjct: 314 SPDEYANNQLLKDEINTVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQ 373 Query: 412 IEAKALRKLRVKT 450 IEAKALRKL+ T Sbjct: 374 IEAKALRKLKHPT 386 [116][TOP] >UniRef100_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans RepID=Q3LW61_BIGNA Length = 389 Score = 99.4 bits (246), Expect = 2e-19 Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTV-KDSVEDERE 231 ED P+E+++ + G+P+ +++ L+ + SLD+ I + + DS+ED + Sbjct: 247 EDKKRYPTEEEI-SLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIEDSKV 305 Query: 232 AADEEFGSD-SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIR 408 E + + SL+ D+ LL L +RE+ V+RLR+GLDDG E TLEEIGE LNVTRER R Sbjct: 306 INSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTRERAR 365 Query: 409 QIEAKALRKLRVKT 450 QIE KAL+KL+ T Sbjct: 366 QIEIKALKKLQFNT 379 [117][TOP] >UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA Length = 372 Score = 99.0 bits (245), Expect = 2e-19 Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 1/122 (0%) Frame = +1 Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-S 255 E + +A LPV +V+ ++ A+ SL+TPIG E + D +ED+ + E+ S Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDTTSPEQHAAS 297 Query: 256 DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435 + LR+ + +L L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK Sbjct: 298 EMLRDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357 Query: 436 LR 441 LR Sbjct: 358 LR 359 [118][TOP] >UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1 RepID=C0QRZ3_PERMH Length = 577 Score = 99.0 bits (245), Expect = 2e-19 Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267 +AK G+P +V+ ++ T++ SL+TPIG ++ + D +ED+ + E+ +LR Sbjct: 447 IAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESH-LGDFIEDKTVMSPEQHVLRQALR 505 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L ERE +V+R RFGL+D E+TLE++G+ VTRERIRQIEAKALRKLR Sbjct: 506 QQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLR 563 [119][TOP] >UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ85_THERP Length = 369 Score = 99.0 bits (245), Expect = 2e-19 Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A+A +P +++ ++E AR SL+ PIG + + D +EDE + A E S L R Sbjct: 240 VARALDMPEEKIRQILEAARLPVSLEAPIG-QDGDAFLGDFIEDETQPAPLEIASQQLLR 298 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E L L ERE R++ LR+GL+DG+ TLEE+G +TRERIRQIEAKALRKLR Sbjct: 299 QQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLR 356 [120][TOP] >UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4K7_CHLAD Length = 345 Score = 99.0 bits (245), Expect = 2e-19 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A A G PV R+Q ++E AR SL+TP+G +E T+ D + DE A E + L Sbjct: 216 IAMALGQPVERIQRILEAARCPVSLETPVG-DEGEHTLGDFITDEELPAPGEIAAQKLLH 274 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 D+ A L +L +RE R++ LR+GL DG+ TLEE+G L +TRER RQIEA+ALR+LR Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR 332 [121][TOP] >UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus delbrueckii subsp. lactis RepID=Q71HU9_LACDL Length = 167 Score = 99.0 bits (245), Expect = 2e-19 Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 1/122 (0%) Frame = +1 Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258 E + +A LPV +V+ +++ A+ SL+TPIG E + D +ED+ + E+ + Sbjct: 34 EPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 92 Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435 + D A +L+ L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK Sbjct: 93 EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 152 Query: 436 LR 441 LR Sbjct: 153 LR 154 [122][TOP] >UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex degensii KC4 RepID=C9R939_9THEO Length = 369 Score = 99.0 bits (245), Expect = 2e-19 Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267 +A+ G+ +V+ +M+ A+ SL+TPIG E + D +ED E +A EE LR Sbjct: 240 IAEKMGISPEKVREIMKVAQEPVSLETPIGEEE-DSHLGDFIEDQEAQAPAEEASYALLR 298 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 + +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR Sbjct: 299 EQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHP 358 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 359 S--RSKKLKDYLE 369 [123][TOP] >UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum RepID=B1QWY9_CLOBU Length = 369 Score = 99.0 bits (245), Expect = 2e-19 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 ++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E Sbjct: 240 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 296 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 297 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 356 [124][TOP] >UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 99.0 bits (245), Expect = 2e-19 Identities = 53/123 (43%), Positives = 81/123 (65%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PSE+++ ++ G+ + +++ME +R+ SL+TP+ + + +S+ E A+E Sbjct: 455 PSEEEI-CESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCS 513 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 D+LR +E +L L RE V+R+RFGL DG+ TLEE+G NVTRERIRQIE+KAL+ Sbjct: 514 RDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALK 573 Query: 433 KLR 441 KLR Sbjct: 574 KLR 576 [125][TOP] >UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970 Length = 377 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ A + Sbjct: 243 PSPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 300 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360 Query: 430 RKLR 441 RKLR Sbjct: 361 RKLR 364 [126][TOP] >UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R970_THETN Length = 372 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 LAK G+P +V+ +++ A+ SL+TPIG E + D + DE A E + + L+ Sbjct: 243 LAKEMGMPEEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAYTMLK 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 302 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 359 [127][TOP] >UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z4Y6_EUBE2 Length = 434 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243 PS +++ A+ +PV RV+ + + ++ SL+TPIG E LG ++D D E Sbjct: 300 PSPEEI-AENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAE 355 Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423 S L+ + +L L ERE +V+RLRFG+DDG+ TLEE+G+ NVTRERIRQIEAK Sbjct: 356 AAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQIEAK 415 Query: 424 ALRKLR 441 ALRKLR Sbjct: 416 ALRKLR 421 [128][TOP] >UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D5_THENN Length = 392 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS ++L AK G P +++ ++E A+ SL++PIG +E +++D V DE + ++ Sbjct: 251 PSVEEL-AKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADESVPSPKKEA 308 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 L R ++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KAL Sbjct: 309 MRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 368 Query: 430 RKLR 441 RKLR Sbjct: 369 RKLR 372 [129][TOP] >UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMC7_CLOBB Length = 374 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 ++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361 [130][TOP] >UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRQ7_CLOB8 Length = 376 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 ++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E Sbjct: 247 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 303 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 304 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 363 [131][TOP] >UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1 Length = 407 Score = 98.6 bits (244), Expect = 3e-19 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387 [132][TOP] >UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QVZ5_MYCS2 Length = 319 Score = 98.6 bits (244), Expect = 3e-19 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+ Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [133][TOP] >UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis RepID=Q59553_MYCSM Length = 319 Score = 98.6 bits (244), Expect = 3e-19 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+ Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [134][TOP] >UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga naphthophila RKU-10 RepID=C7IAE0_9THEM Length = 407 Score = 98.6 bits (244), Expect = 3e-19 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387 [135][TOP] >UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LFQ8_9FIRM Length = 374 Score = 98.6 bits (244), Expect = 3e-19 Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 +A+ +PV+RV+ +++ +R SLDTPIG E + D +ED+ + + + S LR Sbjct: 245 VAERLNVPVSRVREVLKISRDPVSLDTPIG-EEDDSHLGDFIEDDSALSPSDSAAFSMLR 303 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ L L +RE +VV+LRFGL DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 304 EELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361 [136][TOP] >UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E RepID=B2V2K8_CLOBA Length = 374 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 ++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361 [137][TOP] >UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC0_9FIRM Length = 361 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +PV +V+ +M A+ SL+TPIG E + D + DE A + Sbjct: 227 PTAEEISAEL-DMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPDTAA 284 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S +L R + +L L RE +V+RLRFGL+DG+ TLEE+G NVTRERIRQIEAKAL Sbjct: 285 SHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKAL 344 Query: 430 RKLR 441 RKLR Sbjct: 345 RKLR 348 [138][TOP] >UniRef100_P77994 RNA polymerase sigma factor rpoD n=1 Tax=Thermotoga maritima RepID=RPOD_THEMA Length = 399 Score = 98.6 bits (244), Expect = 3e-19 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R Sbjct: 263 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 321 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 322 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 379 [139][TOP] >UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851148 Length = 337 Score = 98.2 bits (243), Expect = 4e-19 Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 3/126 (2%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243 PS +++ + LP +V+ +++ A+ SL+TPIG + LG ++DS E ++ E Sbjct: 203 PSPEEI-GEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS---EAQSPSE 258 Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423 + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK Sbjct: 259 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 318 Query: 424 ALRKLR 441 ALRKLR Sbjct: 319 ALRKLR 324 [140][TOP] >UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens RepID=Q0SRH3_CLOPS Length = 366 Score = 98.2 bits (243), Expect = 4e-19 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 L+K +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353 [141][TOP] >UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB Length = 372 Score = 98.2 bits (243), Expect = 4e-19 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Frame = +1 Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258 E + +A LPV +V+ ++ A+ SL+TPIG E + D +ED+ + E+ + Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 297 Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435 + D A +L+ L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK Sbjct: 298 EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357 Query: 436 LR 441 LR Sbjct: 358 LR 359 [142][TOP] >UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC 4571 RepID=A8YVM2_LACH4 Length = 356 Score = 98.2 bits (243), Expect = 4e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ Sbjct: 222 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 279 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 280 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 339 Query: 430 RKLR 441 RKLR Sbjct: 340 RKLR 343 [143][TOP] >UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T7W4_MYCVP Length = 329 Score = 98.2 bits (243), Expect = 4e-19 Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+ Sbjct: 197 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315 Query: 439 R 441 R Sbjct: 316 R 316 [144][TOP] >UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens RepID=Q0TNV3_CLOP1 Length = 366 Score = 98.2 bits (243), Expect = 4e-19 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 L+K +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353 [145][TOP] >UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus DSM 20075 RepID=C9LZ42_LACHE Length = 370 Score = 98.2 bits (243), Expect = 4e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353 Query: 430 RKLR 441 RKLR Sbjct: 354 RKLR 357 [146][TOP] >UniRef100_C9LLN1 RNA polymerase sigma factor RpoD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLN1_9FIRM Length = 388 Score = 98.2 bits (243), Expect = 4e-19 Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267 LAKA G+ V +++ + + A+ SL+TPIG E + D +ED E A D+ GS LR Sbjct: 263 LAKAMGVSVAKIREVKKIAQDPISLETPIGEKE-DSHLGDFIEDHEAIAPDDAAGSILLR 321 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L EL +RE +V+ LRFGL DG+ TLEE+G+ +VTRERIRQIE KAL KL+ Sbjct: 322 EQIDELLRELTDRERQVLELRFGLKDGRPRTLEEVGKYFDVTRERIRQIEGKALTKLK 379 [147][TOP] >UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705 RepID=C7TJI1_LACRL Length = 416 Score = 98.2 bits (243), Expect = 4e-19 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++ Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403 [148][TOP] >UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F5B8_LACPA Length = 352 Score = 98.2 bits (243), Expect = 4e-19 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++ Sbjct: 229 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 287 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 288 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 339 [149][TOP] >UniRef100_C5EQF6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQF6_9FIRM Length = 381 Score = 98.2 bits (243), Expect = 4e-19 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267 LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369 [150][TOP] >UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZZ1_ABIDE Length = 372 Score = 98.2 bits (243), Expect = 4e-19 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267 + K + +V+ +M+ A+ S +TPIG E + D + D+ A E + + L+ Sbjct: 243 IGKELNMEPEKVRSIMKIAQEPVSFETPIGEEE-DSHIGDFIPDDSNMAPVEAATHAILK 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E +L L EREARV++LRFGL+DG+ TLEE+G+ NVTRERIRQIE+KALRKLR Sbjct: 302 EQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQP 361 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 362 S--RSRKLKDYLE 372 [151][TOP] >UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus RepID=C2KFH9_9LACO Length = 370 Score = 98.2 bits (243), Expect = 4e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353 Query: 430 RKLR 441 RKLR Sbjct: 354 RKLR 357 [152][TOP] >UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXD0_LACRH Length = 416 Score = 98.2 bits (243), Expect = 4e-19 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++ Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403 [153][TOP] >UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus RepID=C2HPX4_LACAC Length = 370 Score = 98.2 bits (243), Expect = 4e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353 Query: 430 RKLR 441 RKLR Sbjct: 354 RKLR 357 [154][TOP] >UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group RepID=B3WEK4_LACCB Length = 422 Score = 98.2 bits (243), Expect = 4e-19 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++ Sbjct: 299 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 357 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 358 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 409 [155][TOP] >UniRef100_C0CZ55 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZ55_9CLOT Length = 381 Score = 98.2 bits (243), Expect = 4e-19 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267 LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369 [156][TOP] >UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus RepID=C7TCR3_LACRG Length = 416 Score = 98.2 bits (243), Expect = 4e-19 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++ Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403 [157][TOP] >UniRef100_A8S2E6 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S2E6_9CLOT Length = 381 Score = 98.2 bits (243), Expect = 4e-19 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267 LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369 [158][TOP] >UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPB3_9FIRM Length = 368 Score = 98.2 bits (243), Expect = 4e-19 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A+ + V RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L + Sbjct: 239 IAREMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFMLLK 297 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 298 EQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355 [159][TOP] >UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA Length = 345 Score = 97.8 bits (242), Expect = 5e-19 Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A A G PV R+Q ++E AR SL+TP+G +E T+ D + DE E + L R Sbjct: 216 IAMALGQPVERIQRILEAARRPVSLETPVG-DEGEHTLGDFLTDEELPTPGEMAAQKLLR 274 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 D+ A L L +RE R++ LR+GL DG+ TLEE+G L +TRER RQIEA+ALR+LR Sbjct: 275 RDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR-- 332 Query: 448 TIDVSGKLMEYGE 486 + +V L +Y E Sbjct: 333 SPEVGQHLRDYLE 345 [160][TOP] >UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWR1_9FIRM Length = 379 Score = 97.8 bits (242), Expect = 5e-19 Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-RNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +EDE + E F S +L R +E + Sbjct: 256 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDEGAMSPEVFTSSALLREQLEDV 314 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG TLE++G+ VTRERIRQIEAKALRKLR Sbjct: 315 LDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLR 366 [161][TOP] >UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EK73_9LACO Length = 370 Score = 97.8 bits (242), Expect = 5e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ Sbjct: 236 PTPEEIGAEM-NVPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353 Query: 430 RKLR 441 RKLR Sbjct: 354 RKLR 357 [162][TOP] >UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EUX7_9FIRM Length = 422 Score = 97.8 bits (242), Expect = 5e-19 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 1/121 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSDSLR 267 +A+A LPV RV + + ++ SL+TPIG E + D ++DE +E LR Sbjct: 292 IAEAMNLPVERVLEISKISQEPVSLETPIGEEE-DSHLGDFIQDEHIPVPADEAAHTLLR 350 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E ++ L ERE +V+ LRFGL+DGK TLEE+G VTRERIRQIEAKALRKLR Sbjct: 351 EQLEKVMDTLSEREQKVLALRFGLEDGKPHTLEEVGREFQVTRERIRQIEAKALRKLRHP 410 Query: 448 T 450 T Sbjct: 411 T 411 [163][TOP] >UniRef100_B1C762 RNA polymerase sigma factor n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C762_9FIRM Length = 403 Score = 97.8 bits (242), Expect = 5e-19 Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK GLP +V+ +M+ ++ SL+TPIG E + D + D+ A EE S L R Sbjct: 275 IAKEMGLPEEKVRDIMKISQDPVSLETPIGEEE-DSHLGDFIPDDDAVAPEEAASYMLLR 333 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 + +L L +REA+V+ LRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 334 TQLFEVLKTLTDREAKVLILRFGLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHP 393 Query: 448 T 450 T Sbjct: 394 T 394 [164][TOP] >UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693157 Length = 375 Score = 97.4 bits (241), Expect = 6e-19 Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267 +AK L +V+ +M+ A+ SL+TPIG E + D +ED+ A + + + L+ Sbjct: 246 IAKEMELSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAAAYELLK 304 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 305 EQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 362 [165][TOP] >UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KI23_CLOPH Length = 372 Score = 97.4 bits (241), Expect = 6e-19 Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ + + ++ SL+TPIG E + D ++D+ E + +L + Sbjct: 243 VAKEMNIPVERVREIQKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAFTLLK 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 + +L L +RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 302 EQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHP 361 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 362 S--RSRKLKDYLE 372 [166][TOP] >UniRef100_A7NN17 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NN17_ROSCS Length = 351 Score = 97.4 bits (241), Expect = 6e-19 Identities = 57/132 (43%), Positives = 80/132 (60%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270 +A+A G+P +V+ML++ + SL+ PI + G + +D +A E L+ Sbjct: 222 IAEAVGMPERKVKMLLQASAQPISLEQPITNDGEGQIGELLADDGADAPMEIATQHMLQR 281 Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450 D+E L++LP+RE V+RLR+GL DG+ TLEEIG A +TRER RQIEA ALR LR Sbjct: 282 DLEQALMDLPDRERAVLRLRYGLTDGRRRTLEEIGSAFGITRERTRQIEADALRLLR--R 339 Query: 451 IDVSGKLMEYGE 486 VS +L Y E Sbjct: 340 PGVSARLQAYLE 351 [167][TOP] >UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium RepID=A1UF13_MYCSK Length = 319 Score = 97.4 bits (241), Expect = 6e-19 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA+ +G+P ++ L+E +R SLD P+G +E P + D +ED E +A+ S+ Sbjct: 187 DEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 246 LLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [168][TOP] >UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum RepID=C1F1D9_ACIC5 Length = 597 Score = 97.4 bits (241), Expect = 6e-19 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 3/147 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +A+ +PV +V+ +++ A+ SL+TPIG E LG ++DS + + E S + Sbjct: 463 IARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDS---QAVSPSEAVISVN 519 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ +L L RE RV+++RFGL+DG E TLEE+G++ VTRERIRQIEAKALRKLR Sbjct: 520 LKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579 Query: 442 VKTIDVSGKLMEYGENLEMLMDGSREM 522 + L +D +REM Sbjct: 580 HPS---------RSRKLRAFVDNAREM 597 [169][TOP] >UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J365_9BACL Length = 374 Score = 97.4 bits (241), Expect = 6e-19 Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ A + Sbjct: 240 PAPEEIAAEM-DLSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 297 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 298 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357 Query: 430 RKLR 441 RKLR Sbjct: 358 RKLR 361 [170][TOP] >UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1 RepID=C0FBN4_9CLOT Length = 372 Score = 97.4 bits (241), Expect = 6e-19 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS ++L A+ +PV RV+ +M+ ++ SL+TPIG E + D ++D+ + Sbjct: 238 PSAEEL-AEKLDMPVERVREIMKISQDPVSLETPIGEEE-DSHLGDFIQDDHVQVPVDAA 295 Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L ++ +L+ L +RE +V+RLRFGLDDG+ TLEE+G NVTRERIRQIEAKAL Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355 Query: 430 RKLR 441 RKLR Sbjct: 356 RKLR 359 [171][TOP] >UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWI1_9CLOT Length = 388 Score = 97.4 bits (241), Expect = 6e-19 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK L V +V+ +M+ A+ SL+TPIG E LG + D D+ A D Sbjct: 259 IAKEMDLSVEKVREIMKIAQDPVSLETPIGEEEDSHLGDFIPD---DDAPAPDISAAYSL 315 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ ++ +L L ERE +V++LRFGL+DG+ TLEE+G+ +VTRERIRQIEAKALRKLR Sbjct: 316 LKEQIDEVLGSLNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 375 [172][TOP] >UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3M7_9CLOT Length = 363 Score = 97.4 bits (241), Expect = 6e-19 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++DE + Sbjct: 229 PSPEEI-AEEMDIPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDENVPVPADAA 286 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L + ++ +L L ERE +V+RLRFGLDD + TLEE+G+ NVTRERIRQIEAKAL Sbjct: 287 AFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKAL 346 Query: 430 RKLR 441 RKLR Sbjct: 347 RKLR 350 [173][TOP] >UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UQQ5_9AQUI Length = 571 Score = 97.4 bits (241), Expect = 6e-19 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK G+ +V+ ++ +A+ SL+TPIG +E +KD +ED+ EE+ S L R Sbjct: 442 IAKHLGMTPDKVRKVLRSAQEPISLETPIGDDE-DTFLKDFIEDKSVPNPEEYVSRKLLR 500 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L ++E ++R R+GL DG E+TLE++G+ NVTRERIRQIE+KA+RKLR Sbjct: 501 EQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLR 558 [174][TOP] >UniRef100_A8PL36 RNA polymerase sigma factor n=1 Tax=Rickettsiella grylli RepID=A8PL36_9COXI Length = 642 Score = 97.4 bits (241), Expect = 6e-19 Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 1/127 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +DL +K GLP +++ +++ A+ S++TPIG + + D +ED + + Sbjct: 505 PSPEDL-SKKMGLPEDKIRKILKIAKEPISMETPIGDEDGDSHLGDFIEDAAALSPIDAA 563 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + LR + +L L REA+V+R+RFG+D + TLEE+G+ +VTRERIRQIEAKAL Sbjct: 564 TIEGLRETAQRVLASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 623 Query: 430 RKLRVKT 450 RKLR T Sbjct: 624 RKLRHPT 630 [175][TOP] >UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium intracellulare ATCC 13950 RepID=UPI0001B45B52 Length = 319 Score = 97.1 bits (240), Expect = 8e-19 Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 187 DEELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [176][TOP] >UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF41E8 Length = 319 Score = 97.1 bits (240), Expect = 8e-19 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA+ +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 187 DEELAEESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [177][TOP] >UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp. nucleatum RepID=Q8RE13_FUSNN Length = 331 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 199 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 257 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 258 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 317 [178][TOP] >UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii RepID=Q74IZ4_LACJO Length = 372 Score = 97.1 bits (240), Expect = 8e-19 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E + Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359 [179][TOP] >UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV68_SULAA Length = 586 Score = 97.1 bits (240), Expect = 8e-19 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267 +AK G+P +V+ ++ T++ SL+TPIG +E + D +ED+ + E ++LR Sbjct: 455 IAKKVGMPAEKVKKILRTSQEPISLETPIGTDE-ETHLGDFIEDKSVLSPEAHMLKNALR 513 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+R RFGL+D E TLE++G+ VTRERIRQIEAKALRKLR Sbjct: 514 MQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 571 [180][TOP] >UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33 RepID=D0BQ42_9FUSO Length = 416 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 284 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 342 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 343 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 402 [181][TOP] >UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3K2_9FIRM Length = 359 Score = 97.1 bits (240), Expect = 8e-19 Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267 +AK + +V+ +M+ A+ SL+TPIG E + D +ED + A EE LR Sbjct: 230 IAKEMNITEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDHDARAPAEEASFTLLR 288 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L +RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR Sbjct: 289 EQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLR 346 [182][TOP] >UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2 RepID=C7XNV3_9FUSO Length = 418 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 286 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404 [183][TOP] >UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWD8_9BACL Length = 325 Score = 97.1 bits (240), Expect = 8e-19 Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267 +AK L +V+ +M+ A+ SL+TPIG E + D +ED A E + + L+ Sbjct: 196 IAKEMDLTPDKVREIMKIAQEPVSLETPIG-EENDSNLGDFIEDHDAPAPAEAAAYELLK 254 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L ERE V+RLRFG+DDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 255 EQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLR 312 [184][TOP] >UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WX07_9FUSO Length = 417 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 285 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 343 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 344 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 403 [185][TOP] >UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium RepID=C3WPP3_9FUSO Length = 340 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 208 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 266 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 267 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 326 [186][TOP] >UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC 33200 RepID=C2E6R7_LACJO Length = 372 Score = 97.1 bits (240), Expect = 8e-19 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E + Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359 [187][TOP] >UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAB3_9CLOT Length = 370 Score = 97.1 bits (240), Expect = 8e-19 Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 ++K LPV +V+ + + A+ SL+TPIG E LG + D D+ A E Sbjct: 241 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 297 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 298 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 357 [188][TOP] >UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri RepID=Q042Y7_LACGA Length = 373 Score = 97.1 bits (240), Expect = 8e-19 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E + Sbjct: 250 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 308 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 309 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 360 [189][TOP] >UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G307_9FIRM Length = 382 Score = 97.1 bits (240), Expect = 8e-19 Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++D+ E Sbjct: 248 PTPEEIAAEL-DMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAA 305 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L + ++ +L L ERE +V+RLRFG+DDG+ TLEE+G+ +VTRERIRQIEAKAL Sbjct: 306 AQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKAL 365 Query: 430 RKLR 441 RKLR Sbjct: 366 RKLR 369 [190][TOP] >UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AZ88_RUMGN Length = 371 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L + Sbjct: 242 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 300 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+RLRFG++DG+ TLEE+G+ +VTRERIRQIEAKALRKLR Sbjct: 301 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 358 [191][TOP] >UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TTP9_FUSNP Length = 418 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261 ++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + + Sbjct: 286 EILAERLGMEVEKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404 [192][TOP] >UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KQA4_9FIRM Length = 383 Score = 97.1 bits (240), Expect = 8e-19 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L + Sbjct: 254 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 312 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+RLRFG++DG+ TLEE+G+ +VTRERIRQIEAKALRKLR Sbjct: 313 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 370 [193][TOP] >UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694293 Length = 367 Score = 96.7 bits (239), Expect = 1e-18 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267 +AK L +V+ +M+ ++ SL+TPIG E + D +ED+ A + S + L+ Sbjct: 238 IAKEMELSTDKVREIMKISQEPVSLETPIG-EENDSNLGDFIEDQDALAPADAASYELLK 296 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L ERE V+RLRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 297 EQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLR 354 [194][TOP] >UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani RepID=Q892T0_CLOTE Length = 366 Score = 96.7 bits (239), Expect = 1e-18 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AK + V RV+ +M+ A+ SL+TPIG E LG + D D+ A E Sbjct: 237 IAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 293 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353 [195][TOP] >UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium RepID=A0QIP2_MYCA1 Length = 319 Score = 96.7 bits (239), Expect = 1e-18 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 187 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [196][TOP] >UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YT68_NOCFA Length = 322 Score = 96.7 bits (239), Expect = 1e-18 Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+PV ++ L++ +R SLD P+G +E P + D +ED E +A+ + Sbjct: 190 DEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAESAVIAG 248 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L +D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 249 LLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 308 Query: 439 R 441 R Sbjct: 309 R 309 [197][TOP] >UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii serovar Hardjo-bovis RepID=Q04T13_LEPBJ Length = 585 Score = 96.7 bits (239), Expect = 1e-18 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%) Frame = +1 Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234 F ++ +A+ G PV +V+M+ AR SL+ P+G +ELG + D+ E E Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502 Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414 S L + +L LP RE +V+R+RFGLDDG TLEE+G VTRERIRQI Sbjct: 503 PVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562 Query: 415 EAKALRKLR 441 EAKALR+LR Sbjct: 563 EAKALRRLR 571 [198][TOP] >UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXH1_HALOH Length = 358 Score = 96.7 bits (239), Expect = 1e-18 Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 + + G+P +V+ +++ A+ SL+TPIG E + D +EDE A S +L R Sbjct: 229 IGEEMGMPAEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAPAPASAASFTLLR 287 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 ++ +L L +RE RV+ LRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 288 EQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHP 347 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 348 S--RSKKLKDYLE 358 [199][TOP] >UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1U1_DESAP Length = 360 Score = 96.7 bits (239), Expect = 1e-18 Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDE-REAADEEFGSDSLR 267 +A+ + +V+ + + A+ SL+TPIG E + D +ED+ +A EE LR Sbjct: 231 IAREMDISEDKVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAQAPAEEASFTLLR 289 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR Sbjct: 290 EQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLR 347 [200][TOP] >UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328 RepID=B0S1K1_FINM2 Length = 388 Score = 96.7 bits (239), Expect = 1e-18 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225 +D P+ +++ AK G+ V +V+ + + A+ SL+TPIG E LG ++D D Sbjct: 248 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 303 Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405 A DE LR ++E +L L ERE +V+ LRFGL DG TLEE+G+ +VTRERI Sbjct: 304 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 363 Query: 406 RQIEAKALRKLR 441 RQIEAKALRKL+ Sbjct: 364 RQIEAKALRKLK 375 [201][TOP] >UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7B9_DESRM Length = 367 Score = 96.7 bits (239), Expect = 1e-18 Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243 PS +++ AK + +V+ +++ A+ SL+TPIG E LG ++D+ + A E Sbjct: 233 PSPEEI-AKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA---DARAPAE 288 Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423 E LR ++ +L L +RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK Sbjct: 289 EASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAK 348 Query: 424 ALRKLR 441 LRKLR Sbjct: 349 TLRKLR 354 [202][TOP] >UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PT65_MYCUA Length = 323 Score = 96.7 bits (239), Expect = 1e-18 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ ++ Sbjct: 191 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVIAE 249 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 309 Query: 439 R 441 R Sbjct: 310 R 310 [203][TOP] >UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis RepID=P77906_MYCTU Length = 345 Score = 96.7 bits (239), Expect = 1e-18 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331 Query: 439 R 441 R Sbjct: 332 R 332 [204][TOP] >UniRef100_P77842 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus RepID=P77842_CHLAU Length = 398 Score = 96.7 bits (239), Expect = 1e-18 Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Frame = +1 Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180 P LG T +R ++A + S D LA G+ ++ + TA+ SL TP+G Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLATVRRTAQDPVSLATPVG 296 Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357 E T+ D + D AD+ S +R + A L +L ERE RV+ LR+GL DG+ Sbjct: 297 -EEANSTLADFIPDPHALDADDAAASGIVRQQITAALDQLSERERRVLELRYGLVDGQPR 355 Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477 TLEE+G+A VTRER+RQIE KALRKLR + GKL++ Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392 [205][TOP] >UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 96.7 bits (239), Expect = 1e-18 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK + V RV+ +M+ A+ SL+TPIG E + D +ED+ A + S L + Sbjct: 244 IAKEMEIGVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPADAASFMLLK 302 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 303 EQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLR 360 [206][TOP] >UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D6_9FIRM Length = 359 Score = 96.7 bits (239), Expect = 1e-18 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%) Frame = +1 Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAAD-EEFGSDSLRNDMEAMLLEL 297 RV+ L++ A+ SL+TP+G E ++D ++DE +E G + LR ++ +L L Sbjct: 239 RVRELLQLAQDPISLETPVGEEE-DAHLEDFIQDEEAGVPVDEAGRELLRRELANVLKSL 297 Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 RE RV+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 298 TPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345 [207][TOP] >UniRef100_C5EQH6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH6_9FIRM Length = 409 Score = 96.7 bits (239), Expect = 1e-18 Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ A+ G+P RV L++ + SL+TP+G E G + D V D+ A+ E+ Sbjct: 274 PSTEEI-AEEVGMPEKRVTELIQASGDTVSLETPVGDEE-GSNLGDFVADDANASTEDKA 331 Query: 253 -SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 S LR +++AML L RE V+ LRFGL+ G TLEE+G NVTRERIRQIE AL Sbjct: 332 ESFLLREEIDAMLQGLNPREREVIILRFGLETGHPLTLEEVGRRFNVTRERIRQIETAAL 391 Query: 430 RKLR 441 RKLR Sbjct: 392 RKLR 395 [208][TOP] >UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis RepID=C0ZYS7_RHOE4 Length = 323 Score = 96.7 bits (239), Expect = 1e-18 Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 1/134 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 DD LA+ +G+P ++ L++ +R SLD P+G +E P + D +ED E +A+ + Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 250 LLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309 Query: 439 RVKTIDVSGKLMEY 480 RV D + KL Y Sbjct: 310 RVG--DRAEKLRSY 321 [209][TOP] >UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516 RepID=C2HGK9_PEPMA Length = 389 Score = 96.7 bits (239), Expect = 1e-18 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225 +D P+ +++ AK G+ V +V+ + + A+ SL+TPIG E LG ++D D Sbjct: 249 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 304 Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405 A DE LR ++E +L L ERE +V+ LRFGL DG TLEE+G+ +VTRERI Sbjct: 305 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 364 Query: 406 RQIEAKALRKLR 441 RQIEAKALRKL+ Sbjct: 365 RQIEAKALRKLK 376 [210][TOP] >UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FXF0_9FIRM Length = 426 Score = 96.7 bits (239), Expect = 1e-18 Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 1/139 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++D+ + Sbjct: 292 PSPEEIAAEM-NMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPADAA 349 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + +L + +E +L L ERE +V+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKAL Sbjct: 350 AFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 409 Query: 430 RKLRVKTIDVSGKLMEYGE 486 RKLR + S KL +Y E Sbjct: 410 RKLRHPS--RSRKLKDYLE 426 [211][TOP] >UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CM66_9FIRM Length = 372 Score = 96.7 bits (239), Expect = 1e-18 Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L + Sbjct: 243 IAKEMDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L L ERE +V+RLRFG++DG+ TLEE+G +VTRERIRQIEAKALRKLR Sbjct: 302 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLR 359 [212][TOP] >UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZA6_9CLOT Length = 365 Score = 96.7 bits (239), Expect = 1e-18 Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264 D +A +PV +V+ +M A+ SL+TPIG E + D + D+ A + S L Sbjct: 234 DEIALELDMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDDDAPAPADAASHIL 292 Query: 265 RNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 + A +L+ L RE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 293 LKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 352 [213][TOP] >UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis complex RepID=A5WQW2_MYCTF Length = 345 Score = 96.7 bits (239), Expect = 1e-18 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331 Query: 439 R 441 R Sbjct: 332 R 332 [214][TOP] >UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans RepID=RPOD_LEPIC Length = 585 Score = 96.7 bits (239), Expect = 1e-18 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%) Frame = +1 Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234 F ++ +A+ G PV +V+M+ AR SL+ P+G +ELG + D+ E E Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502 Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414 S L + +L LP RE +V+R+RFGLDDG TLEE+G VTRERIRQI Sbjct: 503 PVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562 Query: 415 EAKALRKLR 441 EAKALR+LR Sbjct: 563 EAKALRRLR 571 [215][TOP] >UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X96_LACSS Length = 369 Score = 96.3 bits (238), Expect = 1e-18 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%) Frame = +1 Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAMLLEL 297 +V+ +++ A+ SL+TPIG E + D +ED+ + EE S + L+ +E++L L Sbjct: 250 KVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTL 308 Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 309 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356 [216][TOP] >UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24T06_DESHY Length = 367 Score = 96.3 bits (238), Expect = 1e-18 Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A + V RV+ +M+ A+ SL+TPIG E + D + DE A E S L + Sbjct: 238 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 296 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 297 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 356 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 357 S--RSKKLKDYLE 367 [217][TOP] >UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E6V2_MACCJ Length = 366 Score = 96.3 bits (238), Expect = 1e-18 Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225 +D PS +++ + LP +V+ +++ A+ SL+TPIG + LG ++D +D Sbjct: 226 QDLGRDPSPEEI-GEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIED--QDA 282 Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405 + AD + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERI Sbjct: 283 QSPADHA-AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 341 Query: 406 RQIEAKALRKLR 441 RQIEAKALRKLR Sbjct: 342 RQIEAKALRKLR 353 [218][TOP] >UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FTY1_DESHD Length = 372 Score = 96.3 bits (238), Expect = 1e-18 Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 +A + V RV+ +M+ A+ SL+TPIG E + D + DE A E S L + Sbjct: 243 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 301 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 302 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 361 Query: 448 TIDVSGKLMEYGE 486 + S KL +Y E Sbjct: 362 S--RSKKLKDYLE 372 [219][TOP] >UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICM7_THEAB Length = 371 Score = 96.3 bits (238), Expect = 1e-18 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK G PV +V+ +++ A+ SL+ P+G ++ TV D + DE A+ ++ L R Sbjct: 237 LAKLIGKPVEKVEEILQAAKETTSLEAPVGEDD-DSTVGDFIADETIASPKKEAMRMLIR 295 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 +++ +L L +RE V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 296 EEVDKVLETLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 353 [220][TOP] >UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M RepID=B2HLY9_MYCMM Length = 333 Score = 96.3 bits (238), Expect = 1e-18 Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 201 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 259 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 260 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 319 Query: 439 R 441 R Sbjct: 320 R 320 [221][TOP] >UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MCY5_MYCA9 Length = 323 Score = 96.3 bits (238), Expect = 1e-18 Identities = 50/123 (40%), Positives = 84/123 (68%), Gaps = 1/123 (0%) Frame = +1 Query: 76 SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFG 252 + D+ LA+ +G+PV ++ L++ +R SLD P+G +E P + D +ED E +A+ Sbjct: 189 ASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAP-LGDFIEDTEAMSAENAVI 247 Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432 ++ L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + + Sbjct: 248 AELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMA 307 Query: 433 KLR 441 KLR Sbjct: 308 KLR 310 [222][TOP] >UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSG9_ALKMQ Length = 372 Score = 96.3 bits (238), Expect = 1e-18 Identities = 63/144 (43%), Positives = 86/144 (59%), Gaps = 3/144 (2%) Frame = +1 Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREA 234 F + + +AK LP +V+ +++ A+ SL+TPIG E LG + D D+ A Sbjct: 234 FGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPA 290 Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414 E L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQI Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350 Query: 415 EAKALRKLRVKTIDVSGKLMEYGE 486 EAKALRKLR + S KL +Y E Sbjct: 351 EAKALRKLRHPS--RSKKLKDYLE 372 [223][TOP] >UniRef100_Q069K1 RNA polymerase sigma factor (Fragment) n=1 Tax=Fusobacterium necrophorum RepID=Q069K1_9FUSO Length = 185 Score = 96.3 bits (238), Expect = 1e-18 Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Frame = +1 Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264 ++LA+ G+ V +V+ + E + SL+TP+G E + D VED++ E + SL Sbjct: 53 EILAERLGMEVEKVKSIQEMNQDPISLETPVGSEE-DSELGDFVEDQKMLTPYELTNRSL 111 Query: 265 -RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 R ++++L L RE +V+R R+GLDDG TLEE+G+ VTRERIRQIE KALRKLR Sbjct: 112 LREQLDSVLGSLSSREEKVLRYRYGLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLR 171 [224][TOP] >UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9L0_9BACT Length = 969 Score = 96.3 bits (238), Expect = 1e-18 Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS++++ A+ P RV+ + ++ SL+TPIG E + D +ED + E+ Sbjct: 835 PSDEEIAAEMKIEP-ERVEEIKRISQMPVSLETPIGEEE-DSQLGDFIEDRSLPSPEDVA 892 Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 +D+L + +E ML L +RE V+R RFGL+DG+ +TLEE+G VTRERIRQIEAKAL Sbjct: 893 ADNLLQEQIEEMLNALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKAL 952 Query: 430 RKLR 441 RKLR Sbjct: 953 RKLR 956 [225][TOP] >UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium RepID=C9B6G3_ENTFC Length = 369 Score = 96.3 bits (238), Expect = 1e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E + Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356 [226][TOP] >UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium RepID=C2HA56_ENTFC Length = 369 Score = 96.3 bits (238), Expect = 1e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E + Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356 [227][TOP] >UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601 RepID=C2C209_LISGR Length = 389 Score = 96.3 bits (238), Expect = 1e-18 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234 +D PS +++ + LP +V+ +++ A+ SL+TPIG E + D +ED+ Sbjct: 249 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAT 306 Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411 + + + + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G VTRERIRQ Sbjct: 307 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 366 Query: 412 IEAKALRKLR 441 IEAKALRKLR Sbjct: 367 IEAKALRKLR 376 [228][TOP] >UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=A9RXT3_PHYPA Length = 579 Score = 96.3 bits (238), Expect = 1e-18 Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 3/125 (2%) Frame = +1 Query: 76 SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGN---ELGPTVKDSVEDEREAADEE 246 + ++ +A+ GL V +++ ++++A++ S++ PIG + LG V D+ D E A Sbjct: 439 ARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDA--- 495 Query: 247 FGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKA 426 +R D+E +L L RE V+RLRFGLDDG+ TLEEIG+ VTRERIRQIEAKA Sbjct: 496 IVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKA 555 Query: 427 LRKLR 441 +RKLR Sbjct: 556 MRKLR 560 [229][TOP] >UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118 RepID=Q1WTP3_LACS1 Length = 372 Score = 95.9 bits (237), Expect = 2e-18 Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E++ Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359 [230][TOP] >UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTW1_PAESJ Length = 376 Score = 95.9 bits (237), Expect = 2e-18 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ L +V+ +M+ A+ SL+TPIG E + D +ED+ A + Sbjct: 242 PTPEEIAAEME-LSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 299 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 300 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359 Query: 430 RKLR 441 RKLR Sbjct: 360 RKLR 363 [231][TOP] >UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae RepID=B8ZQV3_MYCLB Length = 319 Score = 95.9 bits (237), Expect = 2e-18 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++ Sbjct: 187 DEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305 Query: 439 R 441 R Sbjct: 306 R 306 [232][TOP] >UniRef100_B0SHG5 RNA polymerase sigma factor n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SHG5_LEPBA Length = 590 Score = 95.9 bits (237), Expect = 2e-18 Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS D++ A+ G PV +V+ + AR SL+ P+G E + D +ED+ + Sbjct: 456 PSNDEI-AERLGWPVQKVKAVKNVAREPISLEIPVGSEE-DSELGDFIEDKEVISPLNSA 513 Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + S+ ++ +L+ LP RE +V+R+RFGLDDG TLEE+G VTRERIRQIEAKAL Sbjct: 514 ASSILSEQIRQVLQTLPAREQKVIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIEAKAL 573 Query: 430 RKLR 441 R+LR Sbjct: 574 RRLR 577 [233][TOP] >UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus RepID=O08332_STAAU Length = 368 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [234][TOP] >UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus A9299 RepID=C8M7C3_STAAU Length = 368 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [235][TOP] >UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus A6300 RepID=C8LTM9_STAAU Length = 368 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [236][TOP] >UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus subsp. aureus 68-397 RepID=C8ACF1_STAAU Length = 342 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 219 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 277 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 278 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 329 [237][TOP] >UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU Length = 368 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [238][TOP] >UniRef100_C2KW80 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KW80_9FIRM Length = 385 Score = 95.9 bits (237), Expect = 2e-18 Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267 LA+ + +VQ +M+ AR ASL+TPIG E + D V D + E S LR Sbjct: 256 LAEHLDMTEEKVQEIMQIAREPASLETPIG-EEDDSNLGDFVADTNVLSPEGNVESVMLR 314 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++ +L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR Sbjct: 315 EHIDTLLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 372 [239][TOP] >UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EFJ0_9LACO Length = 372 Score = 95.9 bits (237), Expect = 2e-18 Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 +P +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E++ Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359 [240][TOP] >UniRef100_C1QEG0 RNA polymerase sigma factor n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QEG0_9SPIR Length = 587 Score = 95.9 bits (237), Expect = 2e-18 Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261 +AKA G P +RV+ + A+ SL+ PIG E LG ++D E E+ Sbjct: 457 IAKALGWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDK---EFESPQNITTFKI 513 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 LR ++++L LP+RE +V+R+RFGL DG TLEE+G VTRERIRQIEAKA+R+LR Sbjct: 514 LRKQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLR 573 Query: 442 VKT 450 ++ Sbjct: 574 AQS 576 [241][TOP] >UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp. RepID=RPSD2_BACSP Length = 377 Score = 95.9 bits (237), Expect = 2e-18 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 P+ +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ + Sbjct: 243 PTPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALTPADAA 300 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360 Query: 430 RKLR 441 RKLR Sbjct: 361 RKLR 364 [242][TOP] >UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus RepID=RPOD_STAA8 Length = 368 Score = 95.9 bits (237), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E + Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [243][TOP] >UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL J2-071 RepID=UPI0000F53BBC Length = 374 Score = 95.5 bits (236), Expect = 2e-18 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Frame = +1 Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234 +D PS +++ + LP +V+ +++ A+ SL+TPIG E + D +ED+ Sbjct: 234 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAT 291 Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411 + + + + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G VTRERIRQ Sbjct: 292 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 351 Query: 412 IEAKALRKLR 441 IEAKALRKLR Sbjct: 352 IEAKALRKLR 361 [244][TOP] >UniRef100_Q1IIK4 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIK4_ACIBL Length = 574 Score = 95.5 bits (236), Expect = 2e-18 Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ AK +PV +V+ +++ A+ SL+TPIG E + D +ED + E Sbjct: 436 PSSEEI-AKRMDIPVAKVRKVLKIAQEPISLETPIGEEE-DSHLGDFIEDRSMVSPAEAV 493 Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + D A +L L RE +V+++RFGL+DG E TLEE+G++ VTRERIRQIEAKAL Sbjct: 494 INVNLKDQTAQVLRTLTAREEKVIKMRFGLEDGSEHTLEEVGQSFAVTRERIRQIEAKAL 553 Query: 430 RKLR 441 RKLR Sbjct: 554 RKLR 557 [245][TOP] >UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S1K1_RHOSR Length = 323 Score = 95.5 bits (236), Expect = 2e-18 Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258 DD LA+ +G+P ++ L++ +R SLD P+G +E P + D +ED E +A+ + Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249 Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438 L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + + KL Sbjct: 250 LLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309 Query: 439 R 441 R Sbjct: 310 R 310 [246][TOP] >UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z9_EXISA Length = 364 Score = 95.5 bits (236), Expect = 2e-18 Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 1/124 (0%) Frame = +1 Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252 PS +++ AK L +V+ +++ A+ SL+TPIG E + D +ED+ A ++ Sbjct: 230 PSPEEI-AKEMELTPEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAMAPQDAA 287 Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429 + + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347 Query: 430 RKLR 441 RKLR Sbjct: 348 RKLR 351 [247][TOP] >UniRef100_A8F8P3 RNA polymerase sigma factor n=1 Tax=Thermotoga lettingae TMO RepID=A8F8P3_THELT Length = 400 Score = 95.5 bits (236), Expect = 2e-18 Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267 LAK PV +V+ +++ ++ SL+ P+G +E TV D V DE + ++ L R Sbjct: 265 LAKLMDKPVDKVEEILQASKETVSLEAPVGEDE-DSTVGDFVADENITSPKKEAMRMLMR 323 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 ++E +L L REA V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR Sbjct: 324 EELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 381 [248][TOP] >UniRef100_C8R064 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 95.5 bits (236), Expect = 2e-18 Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267 +A+ G+ + +V+ +++ A+ SLDTP+G E + D +ED + + DE DSL+ Sbjct: 424 MAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGE-DSFLSDFIEDADSTSPDEATIYDSLQ 482 Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447 +++ +L L RE V+RLRFG+D + TLEE+GE +VTRERIRQIEAKAL+KL+ Sbjct: 483 DNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLKHP 542 Query: 448 T 450 T Sbjct: 543 T 543 [249][TOP] >UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1 RepID=C7CSZ1_ENTFA Length = 368 Score = 95.5 bits (236), Expect = 2e-18 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Frame = +1 Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285 LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E + Sbjct: 245 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDV 303 Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 [250][TOP] >UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V565_9FIRM Length = 382 Score = 95.5 bits (236), Expect = 2e-18 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Frame = +1 Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS--- 261 +A GL V RV+ +M+ ++ SL+TPIG E + D +EDE AA + + S Sbjct: 252 IAHRMGLSVARVREIMKISQEPVSLETPIGEEE-DTRLSDFIEDE--AAPDPADAASMLL 308 Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441 L+ + +L L REA V+RLRFGL DG+ TLEE+G+ VTRERIRQIEAKALRKLR Sbjct: 309 LKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKLR 368