AV390342 ( CM058g10_r )

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[1][TOP]
>UniRef100_Q6JDV2 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii
           RepID=Q6JDV2_CHLRE
          Length = 182

 Score =  344 bits (882), Expect = 3e-93
 Identities = 179/180 (99%), Positives = 179/180 (99%)
 Frame = +1

Query: 10  LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 189
           LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE
Sbjct: 1   LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 60

Query: 190 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 369
           LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE
Sbjct: 61  LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 120

Query: 370 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
           IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 121 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 180

[2][TOP]
>UniRef100_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=1 Tax=Chlamydomonas
            reinhardtii RepID=Q8LK21_CHLRE
          Length = 752

 Score =  291 bits (746), Expect = 2e-77
 Identities = 152/153 (99%), Positives = 152/153 (99%)
 Frame = +1

Query: 91   LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
            LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 598  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 657

Query: 271  DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
            DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 658  DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 717

Query: 451  IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
            IDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 718  IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 750

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 34/44 (77%), Positives = 36/44 (81%), Gaps = 7/44 (15%)
 Frame = +1

Query: 7   RLLGPTTSREAAESEDEDSFAGPSEDDLLA-------KAAGLPV 117
           RLLGPTTSREAAESEDEDSFAGPSEDDLLA       K++ LPV
Sbjct: 275 RLLGPTTSREAAESEDEDSFAGPSEDDLLALEQEVSRKSSRLPV 318

[3][TOP]
>UniRef100_Q6JDV1 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii
           RepID=Q6JDV1_CHLRE
          Length = 311

 Score =  291 bits (746), Expect = 2e-77
 Identities = 152/153 (99%), Positives = 152/153 (99%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
           LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 157 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 216

Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
           DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 217 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 276

Query: 451 IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
           IDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 277 IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 309

[4][TOP]
>UniRef100_Q948V6 Chloroplast RNA polymerase sigma factor (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=Q948V6_CHLRE
          Length = 250

 Score =  251 bits (640), Expect = 3e-65
 Identities = 130/130 (100%), Positives = 130/130 (100%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
           LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 115 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 174

Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
           DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 175 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 234

Query: 451 IDVSGKLMEY 480
           IDVSGKLMEY
Sbjct: 235 IDVSGKLMEY 244

[5][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
           RepID=C0ET20_9FIRM
          Length = 367

 Score =  109 bits (273), Expect = 1e-22
 Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           +AK   +PV ++  +++T+R   SLDTPIG  E    + D +EDE   +  +  S S L+
Sbjct: 238 IAKKMNMPVAKIDEILKTSRDPVSLDTPIGEEE-DSQLGDFIEDESLLSPVDSASFSMLK 296

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E  +  L ERE  V++LRFGLDDGK  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 297 EELEEAMASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKLR 354

[6][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9L102_THERP
          Length = 509

 Score =  106 bits (265), Expect = 1e-21
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LA A  +P+ R++ L++ A+   SL+ P+G  E   T+ D +EDER  A  +  + SL R
Sbjct: 380 LAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEES-TLGDFLEDERAVAPLDAAALSLLR 438

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++++L  L ERE RV+ +RFGL+DG+ +TLEE+G A  VTRER+RQIEAKALRKLR
Sbjct: 439 EQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLR 496

[7][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
           DSM 15897 RepID=UPI000196B4EB
          Length = 418

 Score =  105 bits (263), Expect = 2e-21
 Identities = 56/124 (45%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++  K  G+   +V+ + + +    SL+TPIG  E    + D +EDE   + +++ 
Sbjct: 282 PTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 340

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S+ L ++++  +LLEL +RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 341 SNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKAL 400

Query: 430 RKLR 441
           RKL+
Sbjct: 401 RKLK 404

[8][TOP]
>UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
           23779 RepID=A9B1B6_HERA2
          Length = 375

 Score =  105 bits (262), Expect = 2e-21
 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++  +A GLP  +V+ ++E AR   SL+TP+G NE    + D +ED+R +   +  
Sbjct: 240 PSAEEI-GEALGLPADKVRRVLEVARQPVSLETPVG-NEGDSVLGDFIEDDRSSEPLDHA 297

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           ++ L R  ++ +L +L ERE R++ LR+GL DGK  TLEE+G    +TRERIRQIEAK L
Sbjct: 298 TEHLLREQLDEVLCKLDERERRIIELRYGLVDGKYRTLEEVGREFGITRERIRQIEAKVL 357

Query: 430 RKLR 441
           RKLR
Sbjct: 358 RKLR 361

[9][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score =  105 bits (261), Expect = 3e-21
 Identities = 57/123 (46%), Positives = 85/123 (69%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A +  + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 253 PTEEEI-ATSMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 310

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E++L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370

Query: 433 KLR 441
           KLR
Sbjct: 371 KLR 373

[10][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NG03_ROSCS
          Length = 541

 Score =  105 bits (261), Expect = 3e-21
 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261
           D+ L++A G+PV +V+ + +T+    SL+TP+G  E    + D +ED +  A  +  S  
Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467

Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            LR  +E +L +L ERE RV++LRFGL+DG   TLEE+G+   VTRERIRQIE KALRKL
Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527

Query: 439 R 441
           R
Sbjct: 528 R 528

[11][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5UQ16_ROSS1
          Length = 541

 Score =  105 bits (261), Expect = 3e-21
 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261
           D+ L++A G+PV +V+ + +T+    SL+TP+G  E    + D +ED +  A  +  S  
Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467

Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            LR  +E +L +L ERE RV++LRFGL+DG   TLEE+G+   VTRERIRQIE KALRKL
Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527

Query: 439 R 441
           R
Sbjct: 528 R 528

[12][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V564_9FIRM
          Length = 383

 Score =  105 bits (261), Expect = 3e-21
 Identities = 61/118 (51%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK  G+ V RV  +M+ A+   SL+TPIG  E    + D +EDE   A  E  S  L R
Sbjct: 254 IAKEMGITVARVHEIMKIAQEPVSLETPIGEEE-DSHLGDFIEDEAAPAPAEAASFMLLR 312

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L +RE  V+RLRFGL+DG+  TLEE+G++  VTRERIRQIEAKALRKLR
Sbjct: 313 EQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLR 370

[13][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WPM0_9SYNE
          Length = 404

 Score =  103 bits (258), Expect = 6e-21
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 271 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 328

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E++L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388

Query: 433 KLR 441
           KLR
Sbjct: 389 KLR 391

[14][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
          Length = 417

 Score =  103 bits (257), Expect = 8e-21
 Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++  K  G+   +V+ + + +    SL+TPIG  E    + D +EDE   + +++ 
Sbjct: 281 PSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 339

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           ++ L ++++  +LLEL +RE +V+RLRFGLDDG+  TLEE+G+  +VTRERIRQIEAKAL
Sbjct: 340 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 399

Query: 430 RKLR 441
           RKL+
Sbjct: 400 RKLK 403

[15][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
           6301 RepID=Q5N3Q1_SYNP6
          Length = 399

 Score =  103 bits (256), Expect = 1e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383

Query: 433 KLR 441
           KLR
Sbjct: 384 KLR 386

[16][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score =  103 bits (256), Expect = 1e-20
 Identities = 63/124 (50%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ A+A  + V RV+ +M+ A+   SL+TPIG  E    + D +ED+   A  E  
Sbjct: 241 PSPEEI-AEAMEISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAA 298

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S  L +  +E +L  L ERE RV+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358

Query: 430 RKLR 441
           RKLR
Sbjct: 359 RKLR 362

[17][TOP]
>UniRef100_C5EJF9 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5EJF9_9FIRM
          Length = 374

 Score =  103 bits (256), Expect = 1e-20
 Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+A  LPV RV  +M+ A+   SL+TPIG  E    + D ++D+     ++  
Sbjct: 239 PTTEEIAARA-DLPVERVSEIMKMAQEPVSLETPIGEEE-DSHLGDFIQDDNVMVPQDAA 296

Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L ++ +  +LL L ERE +V++LRFGLDDG+  TLEE+G   NVTRERIRQIEAKAL
Sbjct: 297 AFTLLHEQLMEVLLTLTEREQKVLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKAL 356

Query: 430 RKLR 441
           RKLR
Sbjct: 357 RKLR 360

[18][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score =  103 bits (256), Expect = 1e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383

Query: 433 KLR 441
           KLR
Sbjct: 384 KLR 386

[19][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score =  102 bits (255), Expect = 1e-20
 Identities = 56/123 (45%), Positives = 84/123 (68%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 267 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDKVA 324

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+EA+L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384

Query: 433 KLR 441
           KLR
Sbjct: 385 KLR 387

[20][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score =  102 bits (255), Expect = 1e-20
 Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
           +AK  G+   +V+ +M+ A+   SL+TPIG  E    + D VED + +A  EE     LR
Sbjct: 241 IAKEMGISEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFVEDPDAKAPVEEASYTLLR 299

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 300 EQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357

[21][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score =  102 bits (255), Expect = 1e-20
 Identities = 66/133 (49%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A    +PV RV+ + + A+   SL+TPIG  E    + D +EDE   A  E  S  L R
Sbjct: 232 IAHEMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAQAPAEAASFMLLR 290

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E +L  L  RE RV+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 291 EQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHP 350

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 351 S--RSKKLKDYLE 361

[22][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
           Ice1 RepID=B0TG57_HELMI
          Length = 371

 Score =  102 bits (255), Expect = 1e-20
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ +M+ A+   SL+TPIG  E    + D +ED+   A  E  S  L +
Sbjct: 242 IAKEMDIPVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 300

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 301 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 358

[23][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score =  102 bits (255), Expect = 1e-20
 Identities = 57/123 (46%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  K   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[24][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
           RepID=P77870_HELMO
          Length = 333

 Score =  102 bits (255), Expect = 1e-20
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ +M+ A+   SL+TPIG  E    + D +ED+   A  E  S  L +
Sbjct: 204 IAKEMDIPVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 262

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 263 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 320

[25][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score =  102 bits (255), Expect = 1e-20
 Identities = 57/123 (46%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  K   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[26][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score =  102 bits (255), Expect = 1e-20
 Identities = 57/123 (46%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  K   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[27][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score =  102 bits (255), Expect = 1e-20
 Identities = 57/123 (46%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  K   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[28][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9313 RepID=Q7V698_PROMM
          Length = 461

 Score =  102 bits (254), Expect = 2e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 328 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 385

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+   VTRERIRQIEAKALR
Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 446 KLRHP--NRNGVLKEY 459

[29][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score =  102 bits (254), Expect = 2e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 311 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 368

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+   VTRERIRQIEAKALR
Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 429 KLRHP--NRNGVLKEY 442

[30][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
           15981 RepID=C0CZA7_9CLOT
          Length = 405

 Score =  102 bits (254), Expect = 2e-20
 Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIG---GNELGPTVKDSVEDEREAADEEFGSDS 261
           LA+A G+   RV+ L++T+    SL+TP+G   G+ LG  V D+  D  E   E      
Sbjct: 276 LAEAVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENV---L 332

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR ++++ML  L ERE +V++LRFGL++G+  TLEE+G   NVTRERIRQIE  ALRKLR
Sbjct: 333 LREEIDSMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLR 392

[31][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
           43243 RepID=B7AQM8_9BACE
          Length = 448

 Score =  102 bits (254), Expect = 2e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV RV+ + + ++   SL+TPIG  E   LG  ++D   D      EE  S  
Sbjct: 319 IAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAEEAASTI 375

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L ERE +V+RLRFGLDDG+  TLEE+G   NVTRERIRQIEAKALRKLR
Sbjct: 376 LKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLR 435

[32][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
           RepID=B5VWQ7_SPIMA
          Length = 387

 Score =  102 bits (254), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 84/123 (68%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 254 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 311

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E++L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371

Query: 433 KLR 441
           KLR
Sbjct: 372 KLR 374

[33][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YTZ3_9CYAN
          Length = 391

 Score =  102 bits (254), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 84/123 (68%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E++L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375

Query: 433 KLR 441
           KLR
Sbjct: 376 KLR 378

[34][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score =  102 bits (254), Expect = 2e-20
 Identities = 57/123 (46%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  K   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 292 PTEEEIAEKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 349

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 350 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 409

Query: 433 KLR 441
           KLR
Sbjct: 410 KLR 412

[35][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score =  102 bits (253), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 256 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 313

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373

Query: 433 KLR 441
           KLR
Sbjct: 374 KLR 376

[36][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HPM3_CYAP4
          Length = 378

 Score =  102 bits (253), Expect = 2e-20
 Identities = 54/123 (43%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 245 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 302

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V++LR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362

Query: 433 KLR 441
           KLR
Sbjct: 363 KLR 365

[37][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NGG2_ROSCS
          Length = 405

 Score =  102 bits (253), Expect = 2e-20
 Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
 Frame = +1

Query: 4   PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177
           P  +G T +R    S       G  P+ D++ A   G+PV +V+ ++E AR   SL+TPI
Sbjct: 246 PVHVGETINRVMRTSNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 304

Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354
           G  E    + D +ED + A   E  S   LR  +++ L +LPERE R+++LR+GL DG  
Sbjct: 305 GP-EGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPERERRIIQLRYGLYDGHY 363

Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441
            TLEE+G    +TRERIRQIEA+ LRKLR
Sbjct: 364 RTLEEVGREFGITRERIRQIEARVLRKLR 392

[38][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=C4EU48_9BACT
          Length = 387

 Score =  102 bits (253), Expect = 2e-20
 Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249
           PS +++ A+  G+ V RV+ + + A+   SL+TPIG  E    + D +ED +  + DE  
Sbjct: 253 PSAEEI-AQEMGVTVDRVEEIQKIAQEPVSLETPIGEEE-DSQLGDFLEDKDLPSPDEAA 310

Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
            +  LR  +E ML +L +RE  V+RLRFGL+DG   TLEE+G    VTRERIRQIEAKAL
Sbjct: 311 ANQILREQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKAL 370

Query: 430 RKLR 441
           RKLR
Sbjct: 371 RKLR 374

[39][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZJC3_NODSP
          Length = 391

 Score =  102 bits (253), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375

Query: 433 KLR 441
           KLR
Sbjct: 376 KLR 378

[40][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
           RepID=RPOD_ANASP
          Length = 390

 Score =  102 bits (253), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 257 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 314

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374

Query: 433 KLR 441
           KLR
Sbjct: 375 KLR 377

[41][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 82/123 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E E E  +E   
Sbjct: 271 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESEGETPEERVA 328

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E++L  L  RE  V++LR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388

Query: 433 KLR 441
           KLR
Sbjct: 389 KLR 391

[42][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 243 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 300

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 301 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 360

Query: 433 KLR 441
           KLR
Sbjct: 361 KLR 363

[43][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[44][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 281 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 338

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 339 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 398

Query: 433 KLR 441
           KLR
Sbjct: 399 KLR 401

[45][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
           7420 RepID=B4W0Y8_9CYAN
          Length = 380

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 84/123 (68%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A    + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 247 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 304

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E++L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364

Query: 433 KLR 441
           KLR
Sbjct: 365 KLR 367

[46][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 244 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 301

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 302 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 361

Query: 433 KLR 441
           KLR
Sbjct: 362 KLR 364

[47][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RMR2_9CLOT
          Length = 378

 Score =  101 bits (252), Expect = 3e-20
 Identities = 58/124 (46%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   LPV RV  +M+ ++   SL+TPIG  E    + D ++D+     ++  
Sbjct: 243 PTTEEIAARL-DLPVERVSEIMKMSQEPVSLETPIGEEE-DSHLGDFIQDDNVLVPQDAA 300

Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L ++ +  +LL L ERE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 301 AFTLLHEQLMEVLLTLTEREQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKAL 360

Query: 430 RKLR 441
           RKLR
Sbjct: 361 RKLR 364

[48][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score =  101 bits (252), Expect = 3e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400

Query: 433 KLR 441
           KLR
Sbjct: 401 KLR 403

[49][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score =  101 bits (251), Expect = 4e-20
 Identities = 55/123 (44%), Positives = 82/123 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A    + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 285 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 342

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V++LR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402

Query: 433 KLR 441
           KLR
Sbjct: 403 KLR 405

[50][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
           RepID=Q7VD88_PROMA
          Length = 438

 Score =  101 bits (251), Expect = 4e-20
 Identities = 60/136 (44%), Positives = 89/136 (65%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  + +  
Sbjct: 305 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 362

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 363 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 422

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 423 KLRHP--NRNGVLKEY 436

[51][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
           RepID=Q7U5C4_SYNPX
          Length = 471

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 338 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 395

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 396 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 455

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 456 KLRHP--NRNGVLKEY 469

[52][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
           RepID=Q3AWQ6_SYNS9
          Length = 451

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 436 KLRHP--NRNGVLKEY 449

[53][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
           RepID=Q3ALS7_SYNSC
          Length = 435

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 302 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 359

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 360 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 419

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 420 KLRHP--NRNGVLKEY 433

[54][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
           RepID=Q0I8I7_SYNS3
          Length = 440

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 307 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 364

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 365 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 424

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 425 KLRHP--NRNGVLKEY 438

[55][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
           ISDg RepID=A9KRZ0_CLOPH
          Length = 371

 Score =  101 bits (251), Expect = 4e-20
 Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE +L A A  LP+ +V+ +++ +    SLDTPIG  E    + D ++D+     E+  
Sbjct: 236 PSEQEL-ADAMNLPIEKVREILKVSADPISLDTPIG-EEDDSHLGDFIKDDTIMGPEDAA 293

Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S ++  D  + LL+ L ERE RV+ LRFGL DG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 294 SYAVLQDQISKLLDTLTEREQRVLILRFGLQDGRSRTLEEVGKEFNVTRERIRQIEAKAL 353

Query: 430 RKLR 441
           RKLR
Sbjct: 354 RKLR 357

[56][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9211 RepID=A9BEB7_PROM4
          Length = 425

 Score =  101 bits (251), Expect = 4e-20
 Identities = 60/136 (44%), Positives = 89/136 (65%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  + +  
Sbjct: 292 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 349

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 350 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 409

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 410 KLRHP--NRNGVLKEY 423

[57][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
           RepID=A5GJC2_SYNPW
          Length = 450

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 317 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 374

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 375 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 434

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 435 KLRHP--NRNGVLKEY 448

[58][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
           RepID=Q05YJ7_9SYNE
          Length = 451

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 436 KLRHP--NRNGVLKEY 449

[59][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
           RepID=Q05RP2_9SYNE
          Length = 479

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 346 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 403

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 404 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 463

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 464 KLRHP--NRNGVLKEY 477

[60][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
           RepID=D0CLH5_9SYNE
          Length = 458

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 325 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 382

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 383 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 442

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 443 KLRHP--NRNGVLKEY 456

[61][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
           RepID=B5ILG7_9CHRO
          Length = 503

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 370 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 427

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 428 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 487

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 488 KLRHP--NRNGVLKEY 501

[62][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CRY9_SYNPV
          Length = 447

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 314 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 371

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 372 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 431

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 432 KLRHP--NRNGVLKEY 445

[63][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
           RepID=A3Z5L5_9SYNE
          Length = 456

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 323 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 380

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 381 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 440

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 441 KLRHP--NRNGVLKEY 454

[64][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
           RepID=A3YZH3_9SYNE
          Length = 469

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 336 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 393

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 394 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 453

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 454 KLRHP--NRNGVLKEY 467

[65][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
           RepID=B1X5Q2_PAUCH
          Length = 460

 Score =  101 bits (251), Expect = 4e-20
 Identities = 59/136 (43%), Positives = 91/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 327 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 384

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 385 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 444

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 445 KLRHP--NRNGVLKEY 458

[66][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
           pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
          Length = 396

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 263 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 320

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 321 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 380

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 381 KLRHP--NRNGVLKEY 394

[67][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score =  100 bits (250), Expect = 5e-20
 Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A    +PV RV+ + + A+   SL+TPIG  E    + D +ED+   A  E  S +L +
Sbjct: 259 IAAVMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFTLLK 317

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 318 EQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHP 377

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 378 S--RSKKLKDYLE 388

[68][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
           RepID=Q59965_SYNP2
          Length = 375

 Score =  100 bits (250), Expect = 5e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A+   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 242 PTEEEI-AERMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 299

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359

Query: 433 KLR 441
           KLR
Sbjct: 360 KLR 362

[69][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9312 RepID=Q31C37_PROM9
          Length = 393

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391

[70][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9215 RepID=A8G3L2_PROM2
          Length = 393

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391

[71][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9301 RepID=A3PBM1_PROM0
          Length = 394

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 379 KLRHP--NRNGVLKEY 392

[72][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9515 RepID=A2BVF8_PROM5
          Length = 397

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 264 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 321

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 322 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 381

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 382 KLRHP--NRNGVLKEY 395

[73][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           AS9601 RepID=A2BPX8_PROMS
          Length = 394

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 379 KLRHP--NRNGVLKEY 392

[74][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score =  100 bits (250), Expect = 5e-20
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++E  
Sbjct: 246 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGENPEDEVS 303

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 304 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 363

Query: 433 KLR 441
           KLR
Sbjct: 364 KLR 366

[75][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9202 RepID=B9P0P2_PROMA
          Length = 393

 Score =  100 bits (250), Expect = 5e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+G+DDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391

[76][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
           RepID=B1C3P6_9FIRM
          Length = 415

 Score =  100 bits (250), Expect = 5e-20
 Identities = 53/124 (42%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++  +  G+   +V+ + + +    SL+TPIG  E    + D +EDE   + +++ 
Sbjct: 279 PTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGVMSPDDYA 337

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           ++ L ++++  +LLEL +RE +V+RLRFGLDDG+  TLEE+G+  +VTRERIRQIEAKAL
Sbjct: 338 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 397

Query: 430 RKLR 441
           RKL+
Sbjct: 398 RKLK 401

[77][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL2A RepID=Q46GS6_PROMT
          Length = 420

 Score =  100 bits (249), Expect = 7e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 403 KLRHP--NRNGVLKEY 416

[78][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
           RepID=B0CDC4_ACAM1
          Length = 371

 Score =  100 bits (249), Expect = 7e-20
 Identities = 54/123 (43%), Positives = 82/123 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 238 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 295

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V++LR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355

Query: 433 KLR 441
           KLR
Sbjct: 356 KLR 358

[79][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score =  100 bits (249), Expect = 7e-20
 Identities = 60/124 (48%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249
           PS +++ AK   +   +V+ +++ A+   SL+TPIG  E    + D +ED E  A  EE 
Sbjct: 229 PSPEEI-AKEMNITEDKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDHEARAPAEEA 286

Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
               LR  ++ +L  L ERE RV+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK L
Sbjct: 287 SFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 346

Query: 430 RKLR 441
           RKLR
Sbjct: 347 RKLR 350

[80][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL1A RepID=A2C0V5_PROM1
          Length = 420

 Score =  100 bits (249), Expect = 7e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  +++  
Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKALR
Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 403 KLRHP--NRNGVLKEY 416

[81][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
           RepID=A0Q1P4_CLONN
          Length = 368

 Score =  100 bits (249), Expect = 7e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355

[82][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
           1873 RepID=C5VRR6_CLOBO
          Length = 368

 Score =  100 bits (249), Expect = 7e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355

[83][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
           Eklund RepID=B1BDC8_CLOBO
          Length = 368

 Score =  100 bits (249), Expect = 7e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355

[84][TOP]
>UniRef100_A8SUG1 RNA polymerase sigma factor n=1 Tax=Coprococcus eutactus ATCC 27759
           RepID=A8SUG1_9FIRM
          Length = 399

 Score =  100 bits (249), Expect = 7e-20
 Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 4/121 (3%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKD-SVEDEREAADEEFGSD 258
           + +  GLP  RVQ +M+ A+   SL+TPIG  E   LG  ++D S+    EA ++     
Sbjct: 269 VGEVMGLPKERVQEIMKIAQEPVSLETPIGEEEDSHLGDFIQDESIPTPVEATNQTL--- 325

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L   ++ ++  L ERE RV++LRFG DDG+  TLEE+G+  NVTRERIRQIEAKALRKL
Sbjct: 326 -LHEQLDDVVSTLTEREQRVIKLRFGWDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKL 384

Query: 439 R 441
           R
Sbjct: 385 R 385

[85][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score =  100 bits (249), Expect = 7e-20
 Identities = 51/123 (41%), Positives = 85/123 (69%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ AK   + V +++ ++++A+   SL+ P+  ++    + D +E ++E+ +E   
Sbjct: 291 PTEEEI-AKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVE 349

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR+D+E ++  L  RE  VVR+R+GLDDG+  TLEEIG+  +VTRER+RQIEAKA+R
Sbjct: 350 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 409

Query: 433 KLR 441
           KLR
Sbjct: 410 KLR 412

[86][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
           RepID=A5N6R2_CLOK5
          Length = 354

 Score =  100 bits (248), Expect = 9e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 225 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 281

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 282 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 341

[87][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GSD3_SYNR3
          Length = 401

 Score =  100 bits (248), Expect = 9e-20
 Identities = 59/136 (43%), Positives = 90/136 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A++  + + +++ + ++A+   SL+TPIG  E    + D +E + E  D++  
Sbjct: 268 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPDQDVA 325

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            + LR D+E +L  L  RE  V+RLR+GLDDG+  TLEEIG+  +VTRERIRQIEAKAL 
Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385

Query: 433 KLRVKTIDVSGKLMEY 480
           KLR    + +G L EY
Sbjct: 386 KLRHP--NRNGVLKEY 399

[88][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
           RepID=C6PTX7_9CLOT
          Length = 361

 Score =  100 bits (248), Expect = 9e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348

[89][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
           RepID=A5I618_CLOBH
          Length = 361

 Score =  100 bits (248), Expect = 9e-20
 Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348

[90][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score =  100 bits (248), Expect = 9e-20
 Identities = 50/123 (40%), Positives = 85/123 (69%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A+   + V +++ ++++A+   SL+ P+  ++    + D +E ++E+ +E   
Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR+D+E ++  L  RE  VVR+R+GLDDG+  TLEEIG+  +VTRER+RQIEAKA+R
Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426

Query: 433 KLR 441
           KLR
Sbjct: 427 KLR 429

[91][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score =  100 bits (248), Expect = 9e-20
 Identities = 50/123 (40%), Positives = 85/123 (69%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++ A+   + V +++ ++++A+   SL+ P+  ++    + D +E ++E+ +E   
Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR+D+E ++  L  RE  VVR+R+GLDDG+  TLEEIG+  +VTRER+RQIEAKA+R
Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426

Query: 433 KLR 441
           KLR
Sbjct: 427 KLR 429

[92][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score =  100 bits (248), Expect = 9e-20
 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ A+   SL+TPIG  E   LG  + D   DE  A  +      
Sbjct: 249 IAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPADAAAFRM 305

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 306 LKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 365

[93][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 63/135 (46%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +A+   + V RV  +M+ A+   SL+TPIG  +   LG  + D   +E E+ +E      
Sbjct: 229 VAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITD---EEAESPEESASFVL 285

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR  ++ +L  L ERE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 286 LREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLR 345

Query: 442 VKTIDVSGKLMEYGE 486
             +   S KL +Y E
Sbjct: 346 HPS--RSKKLKDYIE 358

[94][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
           RepID=C4ZEX0_EUBR3
          Length = 434

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
           PS +++ AK   +PV RV+ +++ ++   SL+TPIG  E   LG  +KD   D      +
Sbjct: 300 PSPEEI-AKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKD---DNVPVPAD 355

Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
                 L+  +E +L  L ERE +V+ LRFGL+DG+  TLEE+G+  NVTRERIRQIEAK
Sbjct: 356 AAAFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAK 415

Query: 424 ALRKLRVKTIDVSGKLMEYGE 486
           ALRKLR  +   S KL +Y E
Sbjct: 416 ALRKLRHPS--RSRKLKDYLE 434

[95][TOP]
>UniRef100_B8GCU9 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
           RepID=B8GCU9_CHLAD
          Length = 398

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
 Frame = +1

Query: 4   PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
           P  LG T +R ++A  +   S      D  LA   G+   +++ L  TA+   SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296

Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
             E   T+ D + D     AD+   S  LR  + A L +L ERE RV+ LR+GL DG+  
Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQPR 355

Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
           TLEE+G+A  VTRER+RQIE KALRKLR   +   GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392

[96][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
           YO3AOP1 RepID=B2V7P9_SULSY
          Length = 590

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267
           +AK AG+P  +V+ ++ T++   SL+TPIG +E    + D +ED+   + E+     +LR
Sbjct: 459 IAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESH-LGDFIEDKTVLSPEQHMLKQALR 517

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+R RFGL+D  E TLE++G+   VTRERIRQIEAKALRKLR
Sbjct: 518 LQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575

[97][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5V244_ROSS1
          Length = 401

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
 Frame = +1

Query: 4   PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177
           P  +G T +R    S       G  P+ D++ A   G+PV +V+ ++E AR   SL+TPI
Sbjct: 242 PVHVGETINRVMRASNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 300

Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354
           G  E    + D +ED +     +  S   LR  +++ L +LPERE R+++LR+GL DG  
Sbjct: 301 G-TEGDTVLADFIEDGKGVTPMDSASHHILREQIDSALEKLPERERRIIQLRYGLYDGHY 359

Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441
            TLEE+G    +TRERIRQIEA+ LRKLR
Sbjct: 360 RTLEEVGREFGITRERIRQIEARVLRKLR 388

[98][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ ++   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345

[99][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +M+ ++   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345

[100][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
           subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
          Length = 357

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           LAK  G+P  +V+ +M+ A+   SL+TPIG  E    + D + DE   A  E  + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344

[101][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PMA8_9THEO
          Length = 357

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           LAK  G+P  +V+ +M+ A+   SL+TPIG  E    + D + DE   A  E  + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344

[102][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
           RepID=B0K6Y0_THEPX
          Length = 357

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           LAK  G+P  +V+ +M+ A+   SL+TPIG  E    + D + DE   A  E  + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344

[103][TOP]
>UniRef100_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G0D3_ABIDE
          Length = 409

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
           P+E+++ AK   LPV +V+ +M+ +    SLDTPIG  +   LG  +KD   D     ++
Sbjct: 274 PTEEEI-AKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDFIKD---DTIMGPED 329

Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
                 L++ ++ +L  L ERE RV+ LRFGL DG+  TLEE+G+  NVTRERIRQIEAK
Sbjct: 330 AAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAK 389

Query: 424 ALRKLR 441
           ALRKLR
Sbjct: 390 ALRKLR 395

[104][TOP]
>UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM
           5476 RepID=C0EE25_9CLOT
          Length = 372

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A+   +PV +V+ +M  ++   SL+TPIG  E    + D + D+   A  E  S +L R
Sbjct: 243 IAEELDMPVDKVREIMRVSQEPVSLETPIGEEE-DSHLSDFIPDDDAPAPAEAASHTLLR 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  +L  L ERE +V+RLRFGL+DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 302 EQLGDVLGTLTEREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 359

[105][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
          Length = 403

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 54/123 (43%), Positives = 82/123 (66%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+E+++  +   + + +++ + ++A+   SL+TPIG  E    + D +E + E  ++   
Sbjct: 270 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDRVA 327

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
              LR D+E++L  L  RE  V++LR+GLDDG+  TLEEIG+  NVTRERIRQIEAKALR
Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387

Query: 433 KLR 441
           KLR
Sbjct: 388 KLR 390

[106][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
           6725 RepID=B9MQ36_ANATD
          Length = 417

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +++ A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 288 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 344

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L ERE +V++LRFGL+DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 345 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 404

[107][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
 Frame = +1

Query: 79  EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249
           + D +AK  G+ V +V+ +M+ ++   SL+TPIG  E   LG  + D   D+  A  E  
Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282

Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
               L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 283 AFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342

Query: 430 RKLR 441
           RKLR
Sbjct: 343 RKLR 346

[108][TOP]
>UniRef100_A9WAH7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WAH7_CHLAA
          Length = 398

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
 Frame = +1

Query: 4   PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
           P  LG T +R ++A  +   S      D  LA   G+   +++ L  TA+   SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296

Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
             E   T+ D + D     AD+   S  LR  + A L +L ERE RV+ LR+GL DG+  
Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQITAALDQLSERERRVLELRYGLVDGQPR 355

Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
           TLEE+G+A  VTRER+RQIE KALRKLR   +   GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392

[109][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
           23779 RepID=A9B4B0_HERA2
          Length = 400

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSD 258
           D+ LA+A  L V +V+ + +T+    SL+TP+G  E    + D + DE+ EA  +     
Sbjct: 268 DEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEE-DSQLGDFLPDEKLEAPSDAASHQ 326

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            LR  +  +L +L ERE RV++LRFGL+DG + TLEE+G+   VTRERIRQIE KALRKL
Sbjct: 327 MLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKL 386

Query: 439 R 441
           R
Sbjct: 387 R 387

[110][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
           RepID=A6LLT9_THEM4
          Length = 370

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK  G PV +V+ +++ A+   SL+ P+G +E   TV D V DE  A+ ++     L R
Sbjct: 236 LAKIIGKPVEKVEEILQAAKETTSLEAPVGEDE-DSTVGDFVADESIASPKKEAMRMLIR 294

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E +L  L +RE  V+++R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 295 EEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLR 352

[111][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
           saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
          Length = 411

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   +PV +V+ +++ A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 282 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 338

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L ERE +V++LRFGL+DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 339 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 398

[112][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
           RepID=A4TCQ2_MYCGI
          Length = 329

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA+ +G+PV ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    S+
Sbjct: 197 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+  +L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315

Query: 439 R 441
           R
Sbjct: 316 R 316

[113][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
           ATCC 19414 RepID=C8NZE6_ERYRH
          Length = 459

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 56/127 (44%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +   +V+ + + A    SL+TPIG  E    + D +ED+   + +E+ 
Sbjct: 322 PTAEEIAAEMENITPEKVREIQKIALDPVSLETPIG-EEDDSHLGDFIEDKDALSPDEYA 380

Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           ++ L  +   M+LE L ERE +V+RLRFGL+DG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440

Query: 430 RKLRVKT 450
           RKL+  T
Sbjct: 441 RKLKHPT 447

[114][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium papyrosolvens DSM 2782
           RepID=C7IFS3_9CLOT
          Length = 359

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
 Frame = +1

Query: 79  EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249
           + D +AK  G+ V +V+ +M+ ++   SL+TPIG  E   LG  + D   D+  A  E  
Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282

Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
               L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 283 AFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342

Query: 430 RKLR 441
           RKLR
Sbjct: 343 RKLR 346

[115][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
           RepID=A8RBC2_9FIRM
          Length = 398

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 56/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
           +D    P+ +++ AK   +   +V+ + + A    SL+TPIG  E    + D +ED+   
Sbjct: 255 QDLGRDPTAEEIAAKMENISPEKVREIQKIALEPVSLETPIG-EEDDSHLGDFIEDKEAL 313

Query: 235 ADEEFGSDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
           + +E+ ++ L ++++  +L  L ERE +V+RLRFGL DG+  TLEE+G+  NVTRERIRQ
Sbjct: 314 SPDEYANNQLLKDEINTVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQ 373

Query: 412 IEAKALRKLRVKT 450
           IEAKALRKL+  T
Sbjct: 374 IEAKALRKLKHPT 386

[116][TOP]
>UniRef100_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans
           RepID=Q3LW61_BIGNA
          Length = 389

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTV-KDSVEDERE 231
           ED    P+E+++ +   G+P+ +++ L+ +     SLD+ I  +     +  DS+ED + 
Sbjct: 247 EDKKRYPTEEEI-SLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIEDSKV 305

Query: 232 AADEEFGSD-SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIR 408
              E +  + SL+ D+   LL L +RE+ V+RLR+GLDDG E TLEEIGE LNVTRER R
Sbjct: 306 INSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTRERAR 365

Query: 409 QIEAKALRKLRVKT 450
           QIE KAL+KL+  T
Sbjct: 366 QIEIKALKKLQFNT 379

[117][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
          Length = 372

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
 Frame = +1

Query: 79  EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-S 255
           E + +A    LPV +V+  ++ A+   SL+TPIG  E    + D +ED+   + E+   S
Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDTTSPEQHAAS 297

Query: 256 DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
           + LR+ +  +L  L +RE  V+RLRFGLDDG   TLEE+G    VTRERIRQIEAKALRK
Sbjct: 298 EMLRDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357

Query: 436 LR 441
           LR
Sbjct: 358 LR 359

[118][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
           RepID=C0QRZ3_PERMH
          Length = 577

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267
           +AK  G+P  +V+ ++ T++   SL+TPIG ++    + D +ED+   + E+     +LR
Sbjct: 447 IAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESH-LGDFIEDKTVMSPEQHVLRQALR 505

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L ERE +V+R RFGL+D  E+TLE++G+   VTRERIRQIEAKALRKLR
Sbjct: 506 QQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLR 563

[119][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9KZ85_THERP
          Length = 369

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A+A  +P  +++ ++E AR   SL+ PIG  +    + D +EDE + A  E  S  L R
Sbjct: 240 VARALDMPEEKIRQILEAARLPVSLEAPIG-QDGDAFLGDFIEDETQPAPLEIASQQLLR 298

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E  L  L ERE R++ LR+GL+DG+  TLEE+G    +TRERIRQIEAKALRKLR
Sbjct: 299 QQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLR 356

[120][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
           RepID=B8G4K7_CHLAD
          Length = 345

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A A G PV R+Q ++E AR   SL+TP+G +E   T+ D + DE   A  E  +  L  
Sbjct: 216 IAMALGQPVERIQRILEAARCPVSLETPVG-DEGEHTLGDFITDEELPAPGEIAAQKLLH 274

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            D+ A L +L +RE R++ LR+GL DG+  TLEE+G  L +TRER RQIEA+ALR+LR
Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR 332

[121][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
           delbrueckii subsp. lactis RepID=Q71HU9_LACDL
          Length = 167

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
 Frame = +1

Query: 79  EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258
           E + +A    LPV +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  + 
Sbjct: 34  EPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 92

Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
            +  D  A +L+ L +RE  V+RLRFGLDDG   TLEE+G    VTRERIRQIEAKALRK
Sbjct: 93  EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 152

Query: 436 LR 441
           LR
Sbjct: 153 LR 154

[122][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
           +A+  G+   +V+ +M+ A+   SL+TPIG  E    + D +ED E +A  EE     LR
Sbjct: 240 IAEKMGISPEKVREIMKVAQEPVSLETPIGEEE-DSHLGDFIEDQEAQAPAEEASYALLR 298

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK LRKLR  
Sbjct: 299 EQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHP 358

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 359 S--RSKKLKDYLE 369

[123][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
           RepID=B1QWY9_CLOBU
          Length = 369

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           ++K   LPV +V+ + + A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 240 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 296

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 297 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 356

[124][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
           caldarium RepID=Q39515_CYACA
          Length = 591

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 53/123 (43%), Positives = 81/123 (65%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PSE+++  ++ G+   + +++ME +R+  SL+TP+   +    + +S+    E A+E   
Sbjct: 455 PSEEEI-CESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCS 513

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
            D+LR  +E +L  L  RE  V+R+RFGL DG+  TLEE+G   NVTRERIRQIE+KAL+
Sbjct: 514 RDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALK 573

Query: 433 KLR 441
           KLR
Sbjct: 574 KLR 576

[125][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
          Length = 377

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ A+   L V +V+ +M+ A+   SL+TPIG  E    + D +ED+   A  +  
Sbjct: 243 PSPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 300

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + L+  +E +L  L ERE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360

Query: 430 RKLR 441
           RKLR
Sbjct: 361 RKLR 364

[126][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8R970_THETN
          Length = 372

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           LAK  G+P  +V+ +++ A+   SL+TPIG  E    + D + DE   A  E  + + L+
Sbjct: 243 LAKEMGMPEEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAYTMLK 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 302 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 359

[127][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
           RepID=C4Z4Y6_EUBE2
          Length = 434

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
           PS +++ A+   +PV RV+ + + ++   SL+TPIG  E   LG  ++D   D      E
Sbjct: 300 PSPEEI-AENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAE 355

Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
              S  L+  +  +L  L ERE +V+RLRFG+DDG+  TLEE+G+  NVTRERIRQIEAK
Sbjct: 356 AAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQIEAK 415

Query: 424 ALRKLR 441
           ALRKLR
Sbjct: 416 ALRKLR 421

[128][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
           RepID=B9K8D5_THENN
          Length = 392

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS ++L AK  G P  +++ ++E A+   SL++PIG +E   +++D V DE   + ++  
Sbjct: 251 PSVEEL-AKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADESVPSPKKEA 308

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
              L R ++E +L  L  REA V+R+R+GL DGK  TLEE+G+  NVTRERIRQIE KAL
Sbjct: 309 MRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 368

Query: 430 RKLR 441
           RKLR
Sbjct: 369 RKLR 372

[129][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
           Eklund 17B RepID=B2TMC7_CLOBB
          Length = 374

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           ++K   LPV +V+ + + A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361

[130][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
           8052 RepID=A6LRQ7_CLOB8
          Length = 376

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           ++K   LPV +V+ + + A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 247 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 303

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 304 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 363

[131][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
          Length = 407

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK  G P  +++ ++E A+   SL++PIG +E   +++D V D+  A+ ++     L R
Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E +L  L  REA V+R+R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387

[132][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
           MC2 155 RepID=A0QVZ5_MYCS2
          Length = 319

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA+ +G+PV ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    S+
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+  +L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[133][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
           RepID=Q59553_MYCSM
          Length = 319

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA+ +G+PV ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    S+
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+  +L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[134][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
           naphthophila RKU-10 RepID=C7IAE0_9THEM
          Length = 407

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK  G P  +++ ++E A+   SL++PIG +E   +++D V D+  A+ ++     L R
Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E +L  L  REA V+R+R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387

[135][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
           14469 RepID=C6LFQ8_9FIRM
          Length = 374

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           +A+   +PV+RV+ +++ +R   SLDTPIG  E    + D +ED+   +  +  + S LR
Sbjct: 245 VAERLNVPVSRVREVLKISRDPVSLDTPIG-EEDDSHLGDFIEDDSALSPSDSAAFSMLR 303

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++   L  L +RE +VV+LRFGL DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 304 EELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361

[136][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
           RepID=B2V2K8_CLOBA
          Length = 374

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           ++K   LPV +V+ + + A+   SL+TPIG  E   LG  + D   DE  A  E      
Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361

[137][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
           17241 RepID=B0PFC0_9FIRM
          Length = 361

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +PV +V+ +M  A+   SL+TPIG  E    + D + DE   A +   
Sbjct: 227 PTAEEISAEL-DMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPDTAA 284

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S +L R  +  +L  L  RE +V+RLRFGL+DG+  TLEE+G   NVTRERIRQIEAKAL
Sbjct: 285 SHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKAL 344

Query: 430 RKLR 441
           RKLR
Sbjct: 345 RKLR 348

[138][TOP]
>UniRef100_P77994 RNA polymerase sigma factor rpoD n=1 Tax=Thermotoga maritima
           RepID=RPOD_THEMA
          Length = 399

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK  G P  +++ ++E A+   SL++PIG +E   +++D V D+  A+ ++     L R
Sbjct: 263 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 321

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E +L  L  REA V+R+R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 322 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 379

[139][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
           RepID=UPI0001851148
          Length = 337

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
           PS +++  +   LP  +V+ +++ A+   SL+TPIG  +   LG  ++DS   E ++  E
Sbjct: 203 PSPEEI-GEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS---EAQSPSE 258

Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
               + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK
Sbjct: 259 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 318

Query: 424 ALRKLR 441
           ALRKLR
Sbjct: 319 ALRKLR 324

[140][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
           RepID=Q0SRH3_CLOPS
          Length = 366

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           L+K   +PV +V+ +++ A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353

[141][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
          Length = 372

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
 Frame = +1

Query: 79  EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258
           E + +A    LPV +V+  ++ A+   SL+TPIG  E    + D +ED+   + E+  + 
Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 297

Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
            +  D  A +L+ L +RE  V+RLRFGLDDG   TLEE+G    VTRERIRQIEAKALRK
Sbjct: 298 EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357

Query: 436 LR 441
           LR
Sbjct: 358 LR 359

[142][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
           4571 RepID=A8YVM2_LACH4
          Length = 356

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  
Sbjct: 222 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 279

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 280 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 339

Query: 430 RKLR 441
           RKLR
Sbjct: 340 RKLR 343

[143][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
           RepID=A1T7W4_MYCVP
          Length = 329

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+PV ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    S+
Sbjct: 197 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+  +L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315

Query: 439 R 441
           R
Sbjct: 316 R 316

[144][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
           RepID=Q0TNV3_CLOP1
          Length = 366

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           L+K   +PV +V+ +++ A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353

[145][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
           DSM 20075 RepID=C9LZ42_LACHE
          Length = 370

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353

Query: 430 RKLR 441
           RKLR
Sbjct: 354 RKLR 357

[146][TOP]
>UniRef100_C9LLN1 RNA polymerase sigma factor RpoD n=1 Tax=Dialister invisus DSM
           15470 RepID=C9LLN1_9FIRM
          Length = 388

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
           LAKA G+ V +++ + + A+   SL+TPIG  E    + D +ED E  A D+  GS  LR
Sbjct: 263 LAKAMGVSVAKIREVKKIAQDPISLETPIGEKE-DSHLGDFIEDHEAIAPDDAAGSILLR 321

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L EL +RE +V+ LRFGL DG+  TLEE+G+  +VTRERIRQIE KAL KL+
Sbjct: 322 EQIDELLRELTDRERQVLELRFGLKDGRPRTLEEVGKYFDVTRERIRQIEGKALTKLK 379

[147][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
           RepID=C7TJI1_LACRL
          Length = 416

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403

[148][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
           paracasei 8700:2 RepID=C5F5B8_LACPA
          Length = 352

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E++
Sbjct: 229 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 287

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 288 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 339

[149][TOP]
>UniRef100_C5EQF6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5EQF6_9FIRM
          Length = 381

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
           LA+A  +   +V  +M+ AR  ASL+TPIG  E    + D V D      E    S  LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++A+L +L ERE +V+ LRFGL+DG   TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369

[150][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4FZZ1_ABIDE
          Length = 372

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
           + K   +   +V+ +M+ A+   S +TPIG  E    + D + D+   A  E  + + L+
Sbjct: 243 IGKELNMEPEKVRSIMKIAQEPVSFETPIGEEE-DSHIGDFIPDDSNMAPVEAATHAILK 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E +L  L EREARV++LRFGL+DG+  TLEE+G+  NVTRERIRQIE+KALRKLR  
Sbjct: 302 EQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQP 361

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 362 S--RSRKLKDYLE 372

[151][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
           RepID=C2KFH9_9LACO
          Length = 370

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353

Query: 430 RKLR 441
           RKLR
Sbjct: 354 RKLR 357

[152][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
           RepID=C2JXD0_LACRH
          Length = 416

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403

[153][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
           RepID=C2HPX4_LACAC
          Length = 370

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353

Query: 430 RKLR 441
           RKLR
Sbjct: 354 RKLR 357

[154][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
           RepID=B3WEK4_LACCB
          Length = 422

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E++
Sbjct: 299 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 357

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 358 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 409

[155][TOP]
>UniRef100_C0CZ55 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
           15981 RepID=C0CZ55_9CLOT
          Length = 381

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
           LA+A  +   +V  +M+ AR  ASL+TPIG  E    + D V D      E    S  LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++A+L +L ERE +V+ LRFGL+DG   TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369

[156][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
           RepID=C7TCR3_LACRG
          Length = 416

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403

[157][TOP]
>UniRef100_A8S2E6 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S2E6_9CLOT
          Length = 381

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
           LA+A  +   +V  +M+ AR  ASL+TPIG  E    + D V D      E    S  LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++A+L +L ERE +V+ LRFGL+DG   TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369

[158][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A+   + V RV+ +M+ A+   SL+TPIG  E    + D +ED+   A  E  S  L +
Sbjct: 239 IAREMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFMLLK 297

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 298 EQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355

[159][TOP]
>UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA
          Length = 345

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A A G PV R+Q ++E AR   SL+TP+G +E   T+ D + DE      E  +  L R
Sbjct: 216 IAMALGQPVERIQRILEAARRPVSLETPVG-DEGEHTLGDFLTDEELPTPGEMAAQKLLR 274

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
            D+ A L  L +RE R++ LR+GL DG+  TLEE+G  L +TRER RQIEA+ALR+LR  
Sbjct: 275 RDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR-- 332

Query: 448 TIDVSGKLMEYGE 486
           + +V   L +Y E
Sbjct: 333 SPEVGQHLRDYLE 345

[160][TOP]
>UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FWR1_9FIRM
          Length = 379

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-RNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +EDE   + E F S +L R  +E +
Sbjct: 256 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDEGAMSPEVFTSSALLREQLEDV 314

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG   TLE++G+   VTRERIRQIEAKALRKLR
Sbjct: 315 LDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLR 366

[161][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
           16047 RepID=C2EK73_9LACO
          Length = 370

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  
Sbjct: 236 PTPEEIGAEM-NVPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           S + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353

Query: 430 RKLR 441
           RKLR
Sbjct: 354 RKLR 357

[162][TOP]
>UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
           RepID=C0EUX7_9FIRM
          Length = 422

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSDSLR 267
           +A+A  LPV RV  + + ++   SL+TPIG  E    + D ++DE      +E     LR
Sbjct: 292 IAEAMNLPVERVLEISKISQEPVSLETPIGEEE-DSHLGDFIQDEHIPVPADEAAHTLLR 350

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E ++  L ERE +V+ LRFGL+DGK  TLEE+G    VTRERIRQIEAKALRKLR  
Sbjct: 351 EQLEKVMDTLSEREQKVLALRFGLEDGKPHTLEEVGREFQVTRERIRQIEAKALRKLRHP 410

Query: 448 T 450
           T
Sbjct: 411 T 411

[163][TOP]
>UniRef100_B1C762 RNA polymerase sigma factor n=1 Tax=Anaerofustis stercorihominis
           DSM 17244 RepID=B1C762_9FIRM
          Length = 403

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK  GLP  +V+ +M+ ++   SL+TPIG  E    + D + D+   A EE  S  L R
Sbjct: 275 IAKEMGLPEEKVRDIMKISQDPVSLETPIGEEE-DSHLGDFIPDDDAVAPEEAASYMLLR 333

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +  +L  L +REA+V+ LRFGL+DG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 334 TQLFEVLKTLTDREAKVLILRFGLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHP 393

Query: 448 T 450
           T
Sbjct: 394 T 394

[164][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001693157
          Length = 375

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
           +AK   L   +V+ +M+ A+   SL+TPIG  E    + D +ED+   A  +  + + L+
Sbjct: 246 IAKEMELSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAAAYELLK 304

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L ERE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 305 EQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 362

[165][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
           ISDg RepID=A9KI23_CLOPH
          Length = 372

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ + + ++   SL+TPIG  E    + D ++D+      E  + +L +
Sbjct: 243 VAKEMNIPVERVREIQKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAFTLLK 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +  +L  L +RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR  
Sbjct: 302 EQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHP 361

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 362 S--RSRKLKDYLE 372

[166][TOP]
>UniRef100_A7NN17 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NN17_ROSCS
          Length = 351

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 57/132 (43%), Positives = 80/132 (60%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
           +A+A G+P  +V+ML++ +    SL+ PI  +  G   +   +D  +A  E      L+ 
Sbjct: 222 IAEAVGMPERKVKMLLQASAQPISLEQPITNDGEGQIGELLADDGADAPMEIATQHMLQR 281

Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
           D+E  L++LP+RE  V+RLR+GL DG+  TLEEIG A  +TRER RQIEA ALR LR   
Sbjct: 282 DLEQALMDLPDRERAVLRLRYGLTDGRRRTLEEIGSAFGITRERTRQIEADALRLLR--R 339

Query: 451 IDVSGKLMEYGE 486
             VS +L  Y E
Sbjct: 340 PGVSARLQAYLE 351

[167][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
           RepID=A1UF13_MYCSK
          Length = 319

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA+ +G+P  ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    S+
Sbjct: 187 DEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+  +L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[168][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
           RepID=C1F1D9_ACIC5
          Length = 597

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +A+   +PV +V+ +++ A+   SL+TPIG  E   LG  ++DS   +  +  E   S +
Sbjct: 463 IARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDS---QAVSPSEAVISVN 519

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+     +L  L  RE RV+++RFGL+DG E TLEE+G++  VTRERIRQIEAKALRKLR
Sbjct: 520 LKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579

Query: 442 VKTIDVSGKLMEYGENLEMLMDGSREM 522
             +             L   +D +REM
Sbjct: 580 HPS---------RSRKLRAFVDNAREM 597

[169][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6J365_9BACL
          Length = 374

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   L V +V+ +M+ A+   SL+TPIG  E    + D +ED+   A  +  
Sbjct: 240 PAPEEIAAEM-DLSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 297

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + L+  +E +L  L ERE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 298 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357

Query: 430 RKLR 441
           RKLR
Sbjct: 358 RKLR 361

[170][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
           RepID=C0FBN4_9CLOT
          Length = 372

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS ++L A+   +PV RV+ +M+ ++   SL+TPIG  E    + D ++D+      +  
Sbjct: 238 PSAEEL-AEKLDMPVERVREIMKISQDPVSLETPIGEEE-DSHLGDFIQDDHVQVPVDAA 295

Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L ++    +L+ L +RE +V+RLRFGLDDG+  TLEE+G   NVTRERIRQIEAKAL
Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355

Query: 430 RKLR 441
           RKLR
Sbjct: 356 RKLR 359

[171][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
           RepID=B6FWI1_9CLOT
          Length = 388

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   L V +V+ +M+ A+   SL+TPIG  E   LG  + D   D+  A D       
Sbjct: 259 IAKEMDLSVEKVREIMKIAQDPVSLETPIGEEEDSHLGDFIPD---DDAPAPDISAAYSL 315

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  ++ +L  L ERE +V++LRFGL+DG+  TLEE+G+  +VTRERIRQIEAKALRKLR
Sbjct: 316 LKEQIDEVLGSLNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 375

[172][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
           RepID=B0P3M7_9CLOT
          Length = 363

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ A+   +PV RV+ +++ ++   SL+TPIG  E    + D ++DE      +  
Sbjct: 229 PSPEEI-AEEMDIPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDENVPVPADAA 286

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L +  ++ +L  L ERE +V+RLRFGLDD +  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 287 AFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKAL 346

Query: 430 RKLR 441
           RKLR
Sbjct: 347 RKLR 350

[173][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UQQ5_9AQUI
          Length = 571

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK  G+   +V+ ++ +A+   SL+TPIG +E    +KD +ED+     EE+ S  L R
Sbjct: 442 IAKHLGMTPDKVRKVLRSAQEPISLETPIGDDE-DTFLKDFIEDKSVPNPEEYVSRKLLR 500

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L ++E  ++R R+GL DG E+TLE++G+  NVTRERIRQIE+KA+RKLR
Sbjct: 501 EQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLR 558

[174][TOP]
>UniRef100_A8PL36 RNA polymerase sigma factor n=1 Tax=Rickettsiella grylli
           RepID=A8PL36_9COXI
          Length = 642

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +DL +K  GLP  +++ +++ A+   S++TPIG  +    + D +ED    +  +  
Sbjct: 505 PSPEDL-SKKMGLPEDKIRKILKIAKEPISMETPIGDEDGDSHLGDFIEDAAALSPIDAA 563

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + LR   + +L  L  REA+V+R+RFG+D   + TLEE+G+  +VTRERIRQIEAKAL
Sbjct: 564 TIEGLRETAQRVLASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 623

Query: 430 RKLRVKT 450
           RKLR  T
Sbjct: 624 RKLRHPT 630

[175][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
           intracellulare ATCC 13950 RepID=UPI0001B45B52
          Length = 319

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+PV ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 187 DEELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[176][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
           ATCC 12478 RepID=UPI0001AF41E8
          Length = 319

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA+ +G+PV ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 187 DEELAEESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[177][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
           nucleatum RepID=Q8RE13_FUSNN
          Length = 331

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 199 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 257

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 258 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 317

[178][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E +
Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359

[179][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DV68_SULAA
          Length = 586

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
           +AK  G+P  +V+ ++ T++   SL+TPIG +E    + D +ED+   + E     ++LR
Sbjct: 455 IAKKVGMPAEKVKKILRTSQEPISLETPIGTDE-ETHLGDFIEDKSVLSPEAHMLKNALR 513

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+R RFGL+D  E TLE++G+   VTRERIRQIEAKALRKLR
Sbjct: 514 MQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 571

[180][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
           RepID=D0BQ42_9FUSO
          Length = 416

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 284 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 342

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 343 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 402

[181][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W3K2_9FIRM
          Length = 359

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
           +AK   +   +V+ +M+ A+   SL+TPIG  E    + D +ED +  A  EE     LR
Sbjct: 230 IAKEMNITEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDHDARAPAEEASFTLLR 288

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L +RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK LRKLR
Sbjct: 289 EQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLR 346

[182][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
           RepID=C7XNV3_9FUSO
          Length = 418

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 286 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404

[183][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IWD8_9BACL
          Length = 325

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
           +AK   L   +V+ +M+ A+   SL+TPIG  E    + D +ED    A  E  + + L+
Sbjct: 196 IAKEMDLTPDKVREIMKIAQEPVSLETPIG-EENDSNLGDFIEDHDAPAPAEAAAYELLK 254

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L ERE  V+RLRFG+DDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 255 EQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLR 312

[184][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
           RepID=C3WX07_9FUSO
          Length = 417

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 285 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 343

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 344 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 403

[185][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
           RepID=C3WPP3_9FUSO
          Length = 340

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 208 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 266

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 267 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 326

[186][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
           33200 RepID=C2E6R7_LACJO
          Length = 372

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E +
Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359

[187][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1IAB3_9CLOT
          Length = 370

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           ++K   LPV +V+ + + A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 241 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 297

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 298 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 357

[188][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
           RepID=Q042Y7_LACGA
          Length = 373

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   + E+  S + L+  +E +
Sbjct: 250 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 308

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 309 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 360

[189][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G307_9FIRM
          Length = 382

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   +PV RV+ +++ ++   SL+TPIG  E    + D ++D+      E  
Sbjct: 248 PTPEEIAAEL-DMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAA 305

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L +  ++ +L  L ERE +V+RLRFG+DDG+  TLEE+G+  +VTRERIRQIEAKAL
Sbjct: 306 AQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKAL 365

Query: 430 RKLR 441
           RKLR
Sbjct: 366 RKLR 369

[190][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
           RepID=A7AZ88_RUMGN
          Length = 371

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ +++ ++   SL+TPIG  E    + D ++D+      E  + +L +
Sbjct: 242 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 300

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+RLRFG++DG+  TLEE+G+  +VTRERIRQIEAKALRKLR
Sbjct: 301 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 358

[191][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
          Length = 418

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
           ++LA+  G+ V +++ + E  +   SL+TP+G  E    + D VED++  +  E  + + 
Sbjct: 286 EILAERLGMEVEKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR +++A+L  L  RE +V+R R+GLDD    TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404

[192][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
           RepID=A5KQA4_9FIRM
          Length = 383

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ +++ ++   SL+TPIG  E    + D ++D+      E  + +L +
Sbjct: 254 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 312

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+RLRFG++DG+  TLEE+G+  +VTRERIRQIEAKALRKLR
Sbjct: 313 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 370

[193][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001694293
          Length = 367

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
           +AK   L   +V+ +M+ ++   SL+TPIG  E    + D +ED+   A  +  S + L+
Sbjct: 238 IAKEMELSTDKVREIMKISQEPVSLETPIG-EENDSNLGDFIEDQDALAPADAASYELLK 296

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L ERE  V+RLRFGL+DG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 297 EQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLR 354

[194][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AK   + V RV+ +M+ A+   SL+TPIG  E   LG  + D   D+  A  E      
Sbjct: 237 IAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 293

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353

[195][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
           RepID=A0QIP2_MYCA1
          Length = 319

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+P+ ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 187 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[196][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
           RepID=Q5YT68_NOCFA
          Length = 322

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+PV ++  L++ +R   SLD P+G +E  P + D +ED E  +A+    + 
Sbjct: 190 DEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAESAVIAG 248

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L +D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 249 LLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 308

Query: 439 R 441
           R
Sbjct: 309 R 309

[197][TOP]
>UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii
           serovar Hardjo-bovis RepID=Q04T13_LEPBJ
          Length = 585

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
 Frame = +1

Query: 64  FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234
           F     ++ +A+  G PV +V+M+   AR   SL+ P+G    +ELG  + D+   E E 
Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502

Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
                 S  L   +  +L  LP RE +V+R+RFGLDDG   TLEE+G    VTRERIRQI
Sbjct: 503 PVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562

Query: 415 EAKALRKLR 441
           EAKALR+LR
Sbjct: 563 EAKALRRLR 571

[198][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
           RepID=B8CXH1_HALOH
          Length = 358

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           + +  G+P  +V+ +++ A+   SL+TPIG  E    + D +EDE   A     S +L R
Sbjct: 229 IGEEMGMPAEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAPAPASAASFTLLR 287

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             ++ +L  L +RE RV+ LRFGL+DG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 288 EQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHP 347

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 348 S--RSKKLKDYLE 358

[199][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I1U1_DESAP
          Length = 360

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDE-REAADEEFGSDSLR 267
           +A+   +   +V+ + + A+   SL+TPIG  E    + D +ED+  +A  EE     LR
Sbjct: 231 IAREMDISEDKVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAQAPAEEASFTLLR 289

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE RV+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK LRKLR
Sbjct: 290 EQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLR 347

[200][TOP]
>UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328
           RepID=B0S1K1_FINM2
          Length = 388

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
           +D    P+ +++ AK  G+ V +V+ + + A+   SL+TPIG  E   LG  ++D   D 
Sbjct: 248 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 303

Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
             A DE      LR ++E +L  L ERE +V+ LRFGL DG   TLEE+G+  +VTRERI
Sbjct: 304 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 363

Query: 406 RQIEAKALRKLR 441
           RQIEAKALRKL+
Sbjct: 364 RQIEAKALRKLK 375

[201][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
           RepID=A4J7B9_DESRM
          Length = 367

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
           PS +++ AK   +   +V+ +++ A+   SL+TPIG  E   LG  ++D+   +  A  E
Sbjct: 233 PSPEEI-AKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA---DARAPAE 288

Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
           E     LR  ++ +L  L +RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAK
Sbjct: 289 EASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAK 348

Query: 424 ALRKLR 441
            LRKLR
Sbjct: 349 TLRKLR 354

[202][TOP]
>UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
           RepID=A0PT65_MYCUA
          Length = 323

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+PV ++  L+E +R   SLD P+G +E  P + D +ED E  +A+    ++
Sbjct: 191 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVIAE 249

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 309

Query: 439 R 441
           R
Sbjct: 310 R 310

[203][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
           RepID=P77906_MYCTU
          Length = 345

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+P+ ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331

Query: 439 R 441
           R
Sbjct: 332 R 332

[204][TOP]
>UniRef100_P77842 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
           RepID=P77842_CHLAU
          Length = 398

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
 Frame = +1

Query: 4   PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
           P  LG T +R ++A  +   S      D  LA   G+   ++  +  TA+   SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLATVRRTAQDPVSLATPVG 296

Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
             E   T+ D + D     AD+   S  +R  + A L +L ERE RV+ LR+GL DG+  
Sbjct: 297 -EEANSTLADFIPDPHALDADDAAASGIVRQQITAALDQLSERERRVLELRYGLVDGQPR 355

Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
           TLEE+G+A  VTRER+RQIE KALRKLR   +   GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392

[205][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   + V RV+ +M+ A+   SL+TPIG  E    + D +ED+   A  +  S  L +
Sbjct: 244 IAKEMEIGVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPADAASFMLLK 302

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 303 EQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLR 360

[206][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H3D6_9FIRM
          Length = 359

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +1

Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAAD-EEFGSDSLRNDMEAMLLEL 297
           RV+ L++ A+   SL+TP+G  E    ++D ++DE      +E G + LR ++  +L  L
Sbjct: 239 RVRELLQLAQDPISLETPVGEEE-DAHLEDFIQDEEAGVPVDEAGRELLRRELANVLKSL 297

Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             RE RV+ LRFGL+DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 298 TPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345

[207][TOP]
>UniRef100_C5EQH6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5EQH6_9FIRM
          Length = 409

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ A+  G+P  RV  L++ +    SL+TP+G  E G  + D V D+  A+ E+  
Sbjct: 274 PSTEEI-AEEVGMPEKRVTELIQASGDTVSLETPVGDEE-GSNLGDFVADDANASTEDKA 331

Query: 253 -SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
            S  LR +++AML  L  RE  V+ LRFGL+ G   TLEE+G   NVTRERIRQIE  AL
Sbjct: 332 ESFLLREEIDAMLQGLNPREREVIILRFGLETGHPLTLEEVGRRFNVTRERIRQIETAAL 391

Query: 430 RKLR 441
           RKLR
Sbjct: 392 RKLR 395

[208][TOP]
>UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis
           RepID=C0ZYS7_RHOE4
          Length = 323

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           DD LA+ +G+P  ++  L++ +R   SLD P+G +E  P + D +ED E  +A+    + 
Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L +D+ ++L  L ERE +V+RLR+GLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 250 LLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309

Query: 439 RVKTIDVSGKLMEY 480
           RV   D + KL  Y
Sbjct: 310 RVG--DRAEKLRSY 321

[209][TOP]
>UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516
           RepID=C2HGK9_PEPMA
          Length = 389

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
           +D    P+ +++ AK  G+ V +V+ + + A+   SL+TPIG  E   LG  ++D   D 
Sbjct: 249 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 304

Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
             A DE      LR ++E +L  L ERE +V+ LRFGL DG   TLEE+G+  +VTRERI
Sbjct: 305 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 364

Query: 406 RQIEAKALRKLR 441
           RQIEAKALRKL+
Sbjct: 365 RQIEAKALRKLK 376

[210][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
           16841 RepID=C0FXF0_9FIRM
          Length = 426

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ A+   +PV RV+ +++ ++   SL+TPIG  E    + D ++D+      +  
Sbjct: 292 PSPEEIAAEM-NMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPADAA 349

Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + +L +  +E +L  L ERE +V+ LRFGL+DG+  TLEE+G+  NVTRERIRQIEAKAL
Sbjct: 350 AFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 409

Query: 430 RKLRVKTIDVSGKLMEYGE 486
           RKLR  +   S KL +Y E
Sbjct: 410 RKLRHPS--RSRKLKDYLE 426

[211][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
           29176 RepID=B5CM66_9FIRM
          Length = 372

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +AK   +PV RV+ +++ ++   SL+TPIG  E    + D ++D+      E  + +L +
Sbjct: 243 IAKEMDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L  L ERE +V+RLRFG++DG+  TLEE+G   +VTRERIRQIEAKALRKLR
Sbjct: 302 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLR 359

[212][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
           RepID=A7VZA6_9CLOT
          Length = 365

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264
           D +A    +PV +V+ +M  A+   SL+TPIG  E    + D + D+   A  +  S  L
Sbjct: 234 DEIALELDMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDDDAPAPADAASHIL 292

Query: 265 RNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             +  A +L+ L  RE +V+RLRFGL+DG+  TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 293 LKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 352

[213][TOP]
>UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis
           complex RepID=A5WQW2_MYCTF
          Length = 345

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+P+ ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331

Query: 439 R 441
           R
Sbjct: 332 R 332

[214][TOP]
>UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans
           RepID=RPOD_LEPIC
          Length = 585

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
 Frame = +1

Query: 64  FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234
           F     ++ +A+  G PV +V+M+   AR   SL+ P+G    +ELG  + D+   E E 
Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502

Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
                 S  L   +  +L  LP RE +V+R+RFGLDDG   TLEE+G    VTRERIRQI
Sbjct: 503 PVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562

Query: 415 EAKALRKLR 441
           EAKALR+LR
Sbjct: 563 EAKALRRLR 571

[215][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
           sakei 23K RepID=Q38X96_LACSS
          Length = 369

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = +1

Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAMLLEL 297
           +V+ +++ A+   SL+TPIG  E    + D +ED+   + EE  S + L+  +E++L  L
Sbjct: 250 KVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTL 308

Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 309 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356

[216][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A    + V RV+ +M+ A+   SL+TPIG  E    + D + DE   A  E  S  L +
Sbjct: 238 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 296

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 297 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 356

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 357 S--RSKKLKDYLE 367

[217][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
           +D    PS +++  +   LP  +V+ +++ A+   SL+TPIG  +   LG  ++D  +D 
Sbjct: 226 QDLGRDPSPEEI-GEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIED--QDA 282

Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
           +  AD     + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERI
Sbjct: 283 QSPADHA-AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 341

Query: 406 RQIEAKALRKLR 441
           RQIEAKALRKLR
Sbjct: 342 RQIEAKALRKLR 353

[218][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           +A    + V RV+ +M+ A+   SL+TPIG  E    + D + DE   A  E  S  L +
Sbjct: 243 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 301

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
             +E +L  L  RE +V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR  
Sbjct: 302 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 361

Query: 448 TIDVSGKLMEYGE 486
           +   S KL +Y E
Sbjct: 362 S--RSKKLKDYLE 372

[219][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
           RepID=B7ICM7_THEAB
          Length = 371

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK  G PV +V+ +++ A+   SL+ P+G ++   TV D + DE  A+ ++     L R
Sbjct: 237 LAKLIGKPVEKVEEILQAAKETTSLEAPVGEDD-DSTVGDFIADETIASPKKEAMRMLIR 295

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            +++ +L  L +RE  V+++R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 296 EEVDKVLETLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 353

[220][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
           RepID=B2HLY9_MYCMM
          Length = 333

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+PV ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 201 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 259

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 260 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 319

Query: 439 R 441
           R
Sbjct: 320 R 320

[221][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
           19977 RepID=B1MCY5_MYCA9
          Length = 323

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 50/123 (40%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
 Frame = +1

Query: 76  SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFG 252
           + D+ LA+ +G+PV ++  L++ +R   SLD P+G +E  P + D +ED E  +A+    
Sbjct: 189 ASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAP-LGDFIEDTEAMSAENAVI 247

Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
           ++ L +D+ ++L  L ERE +V+RLR+GLDDG+  TL++IG+   ++RER+RQIE + + 
Sbjct: 248 AELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMA 307

Query: 433 KLR 441
           KLR
Sbjct: 308 KLR 310

[222][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 63/144 (43%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
 Frame = +1

Query: 64  FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREA 234
           F    + + +AK   LP  +V+ +++ A+   SL+TPIG  E   LG  + D   D+  A
Sbjct: 234 FGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPA 290

Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
             E      L+  +  +L  L  RE +V+RLRFGLDDG+  TLEE+G+  +VTRERIRQI
Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350

Query: 415 EAKALRKLRVKTIDVSGKLMEYGE 486
           EAKALRKLR  +   S KL +Y E
Sbjct: 351 EAKALRKLRHPS--RSKKLKDYLE 372

[223][TOP]
>UniRef100_Q069K1 RNA polymerase sigma factor (Fragment) n=1 Tax=Fusobacterium
           necrophorum RepID=Q069K1_9FUSO
          Length = 185

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264
           ++LA+  G+ V +V+ + E  +   SL+TP+G  E    + D VED++     E  + SL
Sbjct: 53  EILAERLGMEVEKVKSIQEMNQDPISLETPVGSEE-DSELGDFVEDQKMLTPYELTNRSL 111

Query: 265 -RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            R  ++++L  L  RE +V+R R+GLDDG   TLEE+G+   VTRERIRQIE KALRKLR
Sbjct: 112 LREQLDSVLGSLSSREEKVLRYRYGLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLR 171

[224][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
            E1 RepID=C9M9L0_9BACT
          Length = 969

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73   PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
            PS++++ A+    P  RV+ +   ++   SL+TPIG  E    + D +ED    + E+  
Sbjct: 835  PSDEEIAAEMKIEP-ERVEEIKRISQMPVSLETPIGEEE-DSQLGDFIEDRSLPSPEDVA 892

Query: 253  SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
            +D+L +  +E ML  L +RE  V+R RFGL+DG+ +TLEE+G    VTRERIRQIEAKAL
Sbjct: 893  ADNLLQEQIEEMLNALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKAL 952

Query: 430  RKLR 441
            RKLR
Sbjct: 953  RKLR 956

[225][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
           RepID=C9B6G3_ENTFC
          Length = 369

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED+   +  E  + + L+  +E +
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356

[226][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
           RepID=C2HA56_ENTFC
          Length = 369

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED+   +  E  + + L+  +E +
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356

[227][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C209_LISGR
          Length = 389

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
           +D    PS +++  +   LP  +V+ +++ A+   SL+TPIG  E    + D +ED+   
Sbjct: 249 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAT 306

Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
           +  +  + + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G    VTRERIRQ
Sbjct: 307 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 366

Query: 412 IEAKALRKLR 441
           IEAKALRKLR
Sbjct: 367 IEAKALRKLR 376

[228][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
           RepID=A9RXT3_PHYPA
          Length = 579

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
 Frame = +1

Query: 76  SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGN---ELGPTVKDSVEDEREAADEE 246
           + ++ +A+  GL V +++ ++++A++  S++ PIG +    LG  V D+  D  E A   
Sbjct: 439 ARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDA--- 495

Query: 247 FGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKA 426
                +R D+E +L  L  RE  V+RLRFGLDDG+  TLEEIG+   VTRERIRQIEAKA
Sbjct: 496 IVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKA 555

Query: 427 LRKLR 441
           +RKLR
Sbjct: 556 MRKLR 560

[229][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
           RepID=Q1WTP3_LACS1
          Length = 372

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   +  E  + + L+  +E++
Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359

[230][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
           RepID=C6CTW1_PAESJ
          Length = 376

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   L   +V+ +M+ A+   SL+TPIG  E    + D +ED+   A  +  
Sbjct: 242 PTPEEIAAEME-LSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 299

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + L+  +E +L  L ERE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 300 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359

Query: 430 RKLR 441
           RKLR
Sbjct: 360 RKLR 363

[231][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
           RepID=B8ZQV3_MYCLB
          Length = 319

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           D+ LA  +G+P+ ++  L+E +R   SLD P+G  E  P + D +ED E  +A+    ++
Sbjct: 187 DEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L  D+ ++L  L ERE +V+RLRFGLDDG+  TL++IG+   ++RER+RQIE   + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305

Query: 439 R 441
           R
Sbjct: 306 R 306

[232][TOP]
>UniRef100_B0SHG5 RNA polymerase sigma factor n=2 Tax=Leptospira biflexa serovar
           Patoc RepID=B0SHG5_LEPBA
          Length = 590

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS D++ A+  G PV +V+ +   AR   SL+ P+G  E    + D +ED+   +     
Sbjct: 456 PSNDEI-AERLGWPVQKVKAVKNVAREPISLEIPVGSEE-DSELGDFIEDKEVISPLNSA 513

Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + S+ ++    +L+ LP RE +V+R+RFGLDDG   TLEE+G    VTRERIRQIEAKAL
Sbjct: 514 ASSILSEQIRQVLQTLPAREQKVIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIEAKAL 573

Query: 430 RKLR 441
           R+LR
Sbjct: 574 RRLR 577

[233][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[234][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           A9299 RepID=C8M7C3_STAAU
          Length = 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[235][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus A6300 RepID=C8LTM9_STAAU
          Length = 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[236][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus 68-397 RepID=C8ACF1_STAAU
          Length = 342

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 219 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 277

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 278 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 329

[237][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
          Length = 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[238][TOP]
>UniRef100_C2KW80 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268
           RepID=C2KW80_9FIRM
          Length = 385

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
           LA+   +   +VQ +M+ AR  ASL+TPIG  E    + D V D    + E    S  LR
Sbjct: 256 LAEHLDMTEEKVQEIMQIAREPASLETPIG-EEDDSNLGDFVADTNVLSPEGNVESVMLR 314

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
             ++ +L +L ERE +V+ LRFGL+DG   TLEE+G+  NVTRERIRQIEAKALRKLR
Sbjct: 315 EHIDTLLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 372

[239][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
           11741 RepID=C2EFJ0_9LACO
          Length = 372

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           +P  +V+ +++ A+   SL+TPIG  E    + D +ED+   +  E  + + L+  +E++
Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359

[240][TOP]
>UniRef100_C1QEG0 RNA polymerase sigma factor n=1 Tax=Brachyspira murdochii DSM 12563
           RepID=C1QEG0_9SPIR
          Length = 587

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
           +AKA G P +RV+ +   A+   SL+ PIG  E   LG  ++D    E E+         
Sbjct: 457 IAKALGWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDK---EFESPQNITTFKI 513

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           LR  ++++L  LP+RE +V+R+RFGL DG   TLEE+G    VTRERIRQIEAKA+R+LR
Sbjct: 514 LRKQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLR 573

Query: 442 VKT 450
            ++
Sbjct: 574 AQS 576

[241][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
           RepID=RPSD2_BACSP
          Length = 377

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           P+ +++ A+   L V +V+ +M+ A+   SL+TPIG  E    + D +ED+      +  
Sbjct: 243 PTPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALTPADAA 300

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + L+  +E +L  L ERE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360

Query: 430 RKLR 441
           RKLR
Sbjct: 361 RKLR 364

[242][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
           RepID=RPOD_STAA8
          Length = 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED E ++  +    + L+  +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[243][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
           J2-071 RepID=UPI0000F53BBC
          Length = 374

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
 Frame = +1

Query: 55  EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
           +D    PS +++  +   LP  +V+ +++ A+   SL+TPIG  E    + D +ED+   
Sbjct: 234 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAT 291

Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
           +  +  + + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G    VTRERIRQ
Sbjct: 292 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 351

Query: 412 IEAKALRKLR 441
           IEAKALRKLR
Sbjct: 352 IEAKALRKLR 361

[244][TOP]
>UniRef100_Q1IIK4 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter
           versatilis Ellin345 RepID=Q1IIK4_ACIBL
          Length = 574

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ AK   +PV +V+ +++ A+   SL+TPIG  E    + D +ED    +  E  
Sbjct: 436 PSSEEI-AKRMDIPVAKVRKVLKIAQEPISLETPIGEEE-DSHLGDFIEDRSMVSPAEAV 493

Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
            +    D  A +L  L  RE +V+++RFGL+DG E TLEE+G++  VTRERIRQIEAKAL
Sbjct: 494 INVNLKDQTAQVLRTLTAREEKVIKMRFGLEDGSEHTLEEVGQSFAVTRERIRQIEAKAL 553

Query: 430 RKLR 441
           RKLR
Sbjct: 554 RKLR 557

[245][TOP]
>UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
           RepID=Q0S1K1_RHOSR
          Length = 323

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 82  DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
           DD LA+ +G+P  ++  L++ +R   SLD P+G +E  P + D +ED E  +A+    + 
Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249

Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
            L +D+ ++L  L ERE +V+RLR+GLDDG+  TL++IG+   ++RER+RQIE + + KL
Sbjct: 250 LLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309

Query: 439 R 441
           R
Sbjct: 310 R 310

[246][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
           PS +++ AK   L   +V+ +++ A+   SL+TPIG  E    + D +ED+   A ++  
Sbjct: 230 PSPEEI-AKEMELTPEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAMAPQDAA 287

Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
           + + L+  +E +L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKAL
Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347

Query: 430 RKLR 441
           RKLR
Sbjct: 348 RKLR 351

[247][TOP]
>UniRef100_A8F8P3 RNA polymerase sigma factor n=1 Tax=Thermotoga lettingae TMO
           RepID=A8F8P3_THELT
          Length = 400

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
           LAK    PV +V+ +++ ++   SL+ P+G +E   TV D V DE   + ++     L R
Sbjct: 265 LAKLMDKPVDKVEEILQASKETVSLEAPVGEDE-DSTVGDFVADENITSPKKEAMRMLMR 323

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
            ++E +L  L  REA V+++R+GL DGK  TLEE+G+  NVTRERIRQIE KALRKLR
Sbjct: 324 EELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 381

[248][TOP]
>UniRef100_C8R064 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT
          Length = 555

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
           +A+  G+ + +V+ +++ A+   SLDTP+G  E    + D +ED +  + DE    DSL+
Sbjct: 424 MAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGE-DSFLSDFIEDADSTSPDEATIYDSLQ 482

Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
           +++  +L  L  RE  V+RLRFG+D   + TLEE+GE  +VTRERIRQIEAKAL+KL+  
Sbjct: 483 DNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLKHP 542

Query: 448 T 450
           T
Sbjct: 543 T 543

[249][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
           RepID=C7CSZ1_ENTFA
          Length = 368

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +1

Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
           LP  +V+ +++ A+   SL+TPIG  E    + D +ED+   +  E  + + L+  +E +
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDV 303

Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L  L +RE  V+RLRFGLDDG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355

[250][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V565_9FIRM
          Length = 382

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
 Frame = +1

Query: 91  LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS--- 261
           +A   GL V RV+ +M+ ++   SL+TPIG  E    + D +EDE  AA +   + S   
Sbjct: 252 IAHRMGLSVARVREIMKISQEPVSLETPIGEEE-DTRLSDFIEDE--AAPDPADAASMLL 308

Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
           L+  +  +L  L  REA V+RLRFGL DG+  TLEE+G+   VTRERIRQIEAKALRKLR
Sbjct: 309 LKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKLR 368