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[1][TOP]
>UniRef100_Q6JDV2 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii
RepID=Q6JDV2_CHLRE
Length = 182
Score = 344 bits (882), Expect = 3e-93
Identities = 179/180 (99%), Positives = 179/180 (99%)
Frame = +1
Query: 10 LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 189
LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE
Sbjct: 1 LLGPTTSREAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE 60
Query: 190 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 369
LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE
Sbjct: 61 LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEE 120
Query: 370 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 121 IGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 180
[2][TOP]
>UniRef100_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=1 Tax=Chlamydomonas
reinhardtii RepID=Q8LK21_CHLRE
Length = 752
Score = 291 bits (746), Expect = 2e-77
Identities = 152/153 (99%), Positives = 152/153 (99%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 598 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 657
Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 658 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 717
Query: 451 IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
IDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 718 IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 750
Score = 62.8 bits (151), Expect = 2e-08
Identities = 34/44 (77%), Positives = 36/44 (81%), Gaps = 7/44 (15%)
Frame = +1
Query: 7 RLLGPTTSREAAESEDEDSFAGPSEDDLLA-------KAAGLPV 117
RLLGPTTSREAAESEDEDSFAGPSEDDLLA K++ LPV
Sbjct: 275 RLLGPTTSREAAESEDEDSFAGPSEDDLLALEQEVSRKSSRLPV 318
[3][TOP]
>UniRef100_Q6JDV1 Chloroplast RPOD (Fragment) n=1 Tax=Chlamydomonas reinhardtii
RepID=Q6JDV1_CHLRE
Length = 311
Score = 291 bits (746), Expect = 2e-77
Identities = 152/153 (99%), Positives = 152/153 (99%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 157 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 216
Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 217 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 276
Query: 451 IDVSGKLMEYGENLEMLMDGSREMAARTSSGHR 549
IDVSGKLMEYGENLEMLMDGSREMAARTSSG R
Sbjct: 277 IDVSGKLMEYGENLEMLMDGSREMAARTSSGTR 309
[4][TOP]
>UniRef100_Q948V6 Chloroplast RNA polymerase sigma factor (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=Q948V6_CHLRE
Length = 250
Score = 251 bits (640), Expect = 3e-65
Identities = 130/130 (100%), Positives = 130/130 (100%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN
Sbjct: 115 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 174
Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT
Sbjct: 175 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 234
Query: 451 IDVSGKLMEY 480
IDVSGKLMEY
Sbjct: 235 IDVSGKLMEY 244
[5][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 109 bits (273), Expect = 1e-22
Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
+AK +PV ++ +++T+R SLDTPIG E + D +EDE + + S S L+
Sbjct: 238 IAKKMNMPVAKIDEILKTSRDPVSLDTPIGEEE-DSQLGDFIEDESLLSPVDSASFSMLK 296
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E + L ERE V++LRFGLDDGK TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 297 EELEEAMASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKLR 354
[6][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 106 bits (265), Expect = 1e-21
Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LA A +P+ R++ L++ A+ SL+ P+G E T+ D +EDER A + + SL R
Sbjct: 380 LAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEES-TLGDFLEDERAVAPLDAAALSLLR 438
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++++L L ERE RV+ +RFGL+DG+ +TLEE+G A VTRER+RQIEAKALRKLR
Sbjct: 439 EQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLR 496
[7][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 105 bits (263), Expect = 2e-21
Identities = 56/124 (45%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ K G+ +V+ + + + SL+TPIG E + D +EDE + +++
Sbjct: 282 PTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 340
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S+ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 341 SNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKAL 400
Query: 430 RKLR 441
RKL+
Sbjct: 401 RKLK 404
[8][TOP]
>UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B1B6_HERA2
Length = 375
Score = 105 bits (262), Expect = 2e-21
Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ +A GLP +V+ ++E AR SL+TP+G NE + D +ED+R + +
Sbjct: 240 PSAEEI-GEALGLPADKVRRVLEVARQPVSLETPVG-NEGDSVLGDFIEDDRSSEPLDHA 297
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
++ L R ++ +L +L ERE R++ LR+GL DGK TLEE+G +TRERIRQIEAK L
Sbjct: 298 TEHLLREQLDEVLCKLDERERRIIELRYGLVDGKYRTLEEVGREFGITRERIRQIEAKVL 357
Query: 430 RKLR 441
RKLR
Sbjct: 358 RKLR 361
[9][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 105 bits (261), Expect = 3e-21
Identities = 57/123 (46%), Positives = 85/123 (69%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 253 PTEEEI-ATSMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 310
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370
Query: 433 KLR 441
KLR
Sbjct: 371 KLR 373
[10][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 105 bits (261), Expect = 3e-21
Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261
D+ L++A G+PV +V+ + +T+ SL+TP+G E + D +ED + A + S
Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467
Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
LR +E +L +L ERE RV++LRFGL+DG TLEE+G+ VTRERIRQIE KALRKL
Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527
Query: 439 R 441
R
Sbjct: 528 R 528
[11][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 105 bits (261), Expect = 3e-21
Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS 261
D+ L++A G+PV +V+ + +T+ SL+TP+G E + D +ED + A + S
Sbjct: 409 DEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEE-DSQLGDFIEDSKVLAPSDAASHQ 467
Query: 262 -LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
LR +E +L +L ERE RV++LRFGL+DG TLEE+G+ VTRERIRQIE KALRKL
Sbjct: 468 MLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKL 527
Query: 439 R 441
R
Sbjct: 528 R 528
[12][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 105 bits (261), Expect = 3e-21
Identities = 61/118 (51%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK G+ V RV +M+ A+ SL+TPIG E + D +EDE A E S L R
Sbjct: 254 IAKEMGITVARVHEIMKIAQEPVSLETPIGEEE-DSHLGDFIEDEAAPAPAEAASFMLLR 312
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L +RE V+RLRFGL+DG+ TLEE+G++ VTRERIRQIEAKALRKLR
Sbjct: 313 EQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLR 370
[13][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 103 bits (258), Expect = 6e-21
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 271 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDEVS 328
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388
Query: 433 KLR 441
KLR
Sbjct: 389 KLR 391
[14][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
Length = 417
Score = 103 bits (257), Expect = 8e-21
Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ K G+ +V+ + + + SL+TPIG E + D +EDE + +++
Sbjct: 281 PSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGAMSPDDYA 339
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
++ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQIEAKAL
Sbjct: 340 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 399
Query: 430 RKLR 441
RKL+
Sbjct: 400 RKLK 403
[15][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 103 bits (256), Expect = 1e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383
Query: 433 KLR 441
KLR
Sbjct: 384 KLR 386
[16][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 103 bits (256), Expect = 1e-20
Identities = 63/124 (50%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ A+A + V RV+ +M+ A+ SL+TPIG E + D +ED+ A E
Sbjct: 241 PSPEEI-AEAMEISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAA 298
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S L + +E +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358
Query: 430 RKLR 441
RKLR
Sbjct: 359 RKLR 362
[17][TOP]
>UniRef100_C5EJF9 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EJF9_9FIRM
Length = 374
Score = 103 bits (256), Expect = 1e-20
Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+A LPV RV +M+ A+ SL+TPIG E + D ++D+ ++
Sbjct: 239 PTTEEIAARA-DLPVERVSEIMKMAQEPVSLETPIGEEE-DSHLGDFIQDDNVMVPQDAA 296
Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L ++ + +LL L ERE +V++LRFGLDDG+ TLEE+G NVTRERIRQIEAKAL
Sbjct: 297 AFTLLHEQLMEVLLTLTEREQKVLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKAL 356
Query: 430 RKLR 441
RKLR
Sbjct: 357 RKLR 360
[18][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 103 bits (256), Expect = 1e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 266 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVA 323
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383
Query: 433 KLR 441
KLR
Sbjct: 384 KLR 386
[19][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 102 bits (255), Expect = 1e-20
Identities = 56/123 (45%), Positives = 84/123 (68%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 267 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDKVA 324
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+EA+L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384
Query: 433 KLR 441
KLR
Sbjct: 385 KLR 387
[20][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 102 bits (255), Expect = 1e-20
Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
+AK G+ +V+ +M+ A+ SL+TPIG E + D VED + +A EE LR
Sbjct: 241 IAKEMGISEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFVEDPDAKAPVEEASYTLLR 299
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 300 EQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357
[21][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 102 bits (255), Expect = 1e-20
Identities = 66/133 (49%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A +PV RV+ + + A+ SL+TPIG E + D +EDE A E S L R
Sbjct: 232 IAHEMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAQAPAEAASFMLLR 290
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E +L L RE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 291 EQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHP 350
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 351 S--RSKKLKDYLE 361
[22][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 102 bits (255), Expect = 1e-20
Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L +
Sbjct: 242 IAKEMDIPVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 300
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 301 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 358
[23][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 102 bits (255), Expect = 1e-20
Identities = 57/123 (46%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[24][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 102 bits (255), Expect = 1e-20
Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L +
Sbjct: 204 IAKEMDIPVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFILLK 262
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 263 EQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 320
[25][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 102 bits (255), Expect = 1e-20
Identities = 57/123 (46%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[26][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 102 bits (255), Expect = 1e-20
Identities = 57/123 (46%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[27][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 102 bits (255), Expect = 1e-20
Identities = 57/123 (46%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[28][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 102 bits (254), Expect = 2e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 328 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 385
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ VTRERIRQIEAKALR
Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 446 KLRHP--NRNGVLKEY 459
[29][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 102 bits (254), Expect = 2e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 311 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDTENPEQDVA 368
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ VTRERIRQIEAKALR
Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 429 KLRHP--NRNGVLKEY 442
[30][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 102 bits (254), Expect = 2e-20
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIG---GNELGPTVKDSVEDEREAADEEFGSDS 261
LA+A G+ RV+ L++T+ SL+TP+G G+ LG V D+ D E E
Sbjct: 276 LAEAVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENV---L 332
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR ++++ML L ERE +V++LRFGL++G+ TLEE+G NVTRERIRQIE ALRKLR
Sbjct: 333 LREEIDSMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLR 392
[31][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 102 bits (254), Expect = 2e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV RV+ + + ++ SL+TPIG E LG ++D D EE S
Sbjct: 319 IAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAEEAASTI 375
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L ERE +V+RLRFGLDDG+ TLEE+G NVTRERIRQIEAKALRKLR
Sbjct: 376 LKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLR 435
[32][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 102 bits (254), Expect = 2e-20
Identities = 55/123 (44%), Positives = 84/123 (68%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 254 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 311
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371
Query: 433 KLR 441
KLR
Sbjct: 372 KLR 374
[33][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 102 bits (254), Expect = 2e-20
Identities = 55/123 (44%), Positives = 84/123 (68%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375
Query: 433 KLR 441
KLR
Sbjct: 376 KLR 378
[34][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 102 bits (254), Expect = 2e-20
Identities = 57/123 (46%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ K + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 292 PTEEEIAEKME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 349
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 350 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 409
Query: 433 KLR 441
KLR
Sbjct: 410 KLR 412
[35][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 102 bits (253), Expect = 2e-20
Identities = 55/123 (44%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 256 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 313
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373
Query: 433 KLR 441
KLR
Sbjct: 374 KLR 376
[36][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 102 bits (253), Expect = 2e-20
Identities = 54/123 (43%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 245 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 302
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362
Query: 433 KLR 441
KLR
Sbjct: 363 KLR 365
[37][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 102 bits (253), Expect = 2e-20
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Frame = +1
Query: 4 PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177
P +G T +R S G P+ D++ A G+PV +V+ ++E AR SL+TPI
Sbjct: 246 PVHVGETINRVMRTSNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 304
Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354
G E + D +ED + A E S LR +++ L +LPERE R+++LR+GL DG
Sbjct: 305 GP-EGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPERERRIIQLRYGLYDGHY 363
Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441
TLEE+G +TRERIRQIEA+ LRKLR
Sbjct: 364 RTLEEVGREFGITRERIRQIEARVLRKLR 392
[38][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 102 bits (253), Expect = 2e-20
Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249
PS +++ A+ G+ V RV+ + + A+ SL+TPIG E + D +ED + + DE
Sbjct: 253 PSAEEI-AQEMGVTVDRVEEIQKIAQEPVSLETPIGEEE-DSQLGDFLEDKDLPSPDEAA 310
Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ LR +E ML +L +RE V+RLRFGL+DG TLEE+G VTRERIRQIEAKAL
Sbjct: 311 ANQILREQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKAL 370
Query: 430 RKLR 441
RKLR
Sbjct: 371 RKLR 374
[39][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 102 bits (253), Expect = 2e-20
Identities = 55/123 (44%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 258 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 315
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375
Query: 433 KLR 441
KLR
Sbjct: 376 KLR 378
[40][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 102 bits (253), Expect = 2e-20
Identities = 55/123 (44%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 257 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 314
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374
Query: 433 KLR 441
KLR
Sbjct: 375 KLR 377
[41][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 82/123 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E E E +E
Sbjct: 271 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESEGETPEERVA 328
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E++L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388
Query: 433 KLR 441
KLR
Sbjct: 389 KLR 391
[42][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 243 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 300
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 301 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 360
Query: 433 KLR 441
KLR
Sbjct: 361 KLR 363
[43][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[44][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 281 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 338
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 339 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 398
Query: 433 KLR 441
KLR
Sbjct: 399 KLR 401
[45][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 84/123 (68%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 247 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 304
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E++L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364
Query: 433 KLR 441
KLR
Sbjct: 365 KLR 367
[46][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 244 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 301
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 302 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 361
Query: 433 KLR 441
KLR
Sbjct: 362 KLR 364
[47][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 101 bits (252), Expect = 3e-20
Identities = 58/124 (46%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ LPV RV +M+ ++ SL+TPIG E + D ++D+ ++
Sbjct: 243 PTTEEIAARL-DLPVERVSEIMKMSQEPVSLETPIGEEE-DSHLGDFIQDDNVLVPQDAA 300
Query: 253 SDSLRND-MEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L ++ + +LL L ERE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 301 AFTLLHEQLMEVLLTLTEREQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKAL 360
Query: 430 RKLR 441
RKLR
Sbjct: 361 RKLR 364
[48][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 101 bits (252), Expect = 3e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 283 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDEVS 340
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 341 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 400
Query: 433 KLR 441
KLR
Sbjct: 401 KLR 403
[49][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 101 bits (251), Expect = 4e-20
Identities = 55/123 (44%), Positives = 82/123 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 285 PTEEEI-ADRMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 342
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402
Query: 433 KLR 441
KLR
Sbjct: 403 KLR 405
[50][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 101 bits (251), Expect = 4e-20
Identities = 60/136 (44%), Positives = 89/136 (65%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E + +
Sbjct: 305 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 362
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 363 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 422
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 423 KLRHP--NRNGVLKEY 436
[51][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 338 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 395
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 396 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 455
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 456 KLRHP--NRNGVLKEY 469
[52][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 436 KLRHP--NRNGVLKEY 449
[53][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 302 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 359
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 360 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 419
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 420 KLRHP--NRNGVLKEY 433
[54][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 307 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 364
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 365 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 424
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 425 KLRHP--NRNGVLKEY 438
[55][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KRZ0_CLOPH
Length = 371
Score = 101 bits (251), Expect = 4e-20
Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE +L A A LP+ +V+ +++ + SLDTPIG E + D ++D+ E+
Sbjct: 236 PSEQEL-ADAMNLPIEKVREILKVSADPISLDTPIG-EEDDSHLGDFIKDDTIMGPEDAA 293
Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S ++ D + LL+ L ERE RV+ LRFGL DG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 294 SYAVLQDQISKLLDTLTEREQRVLILRFGLQDGRSRTLEEVGKEFNVTRERIRQIEAKAL 353
Query: 430 RKLR 441
RKLR
Sbjct: 354 RKLR 357
[56][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 101 bits (251), Expect = 4e-20
Identities = 60/136 (44%), Positives = 89/136 (65%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E + +
Sbjct: 292 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDSENPELDVA 349
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 350 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 409
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 410 KLRHP--NRNGVLKEY 423
[57][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 317 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 374
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 375 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 434
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 435 KLRHP--NRNGVLKEY 448
[58][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 318 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 375
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 376 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 435
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 436 KLRHP--NRNGVLKEY 449
[59][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 346 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 403
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 404 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 463
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 464 KLRHP--NRNGVLKEY 477
[60][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 325 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 382
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 383 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 442
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 443 KLRHP--NRNGVLKEY 456
[61][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 370 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 427
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 428 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 487
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 488 KLRHP--NRNGVLKEY 501
[62][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 314 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 371
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 372 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 431
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 432 KLRHP--NRNGVLKEY 445
[63][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 323 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 380
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 381 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 440
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 441 KLRHP--NRNGVLKEY 454
[64][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 336 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 393
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 394 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 453
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 454 KLRHP--NRNGVLKEY 467
[65][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 101 bits (251), Expect = 4e-20
Identities = 59/136 (43%), Positives = 91/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 327 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 384
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 385 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 444
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 445 KLRHP--NRNGVLKEY 458
[66][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 263 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 320
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 321 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 380
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 381 KLRHP--NRNGVLKEY 394
[67][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 100 bits (250), Expect = 5e-20
Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A +PV RV+ + + A+ SL+TPIG E + D +ED+ A E S +L +
Sbjct: 259 IAAVMDIPVERVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFTLLK 317
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 318 EQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHP 377
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 378 S--RSKKLKDYLE 388
[68][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 100 bits (250), Expect = 5e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A+ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 242 PTEEEI-AERMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGETPEDQVS 299
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359
Query: 433 KLR 441
KLR
Sbjct: 360 KLR 362
[69][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391
[70][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391
[71][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 379 KLRHP--NRNGVLKEY 392
[72][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 264 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 321
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 322 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 381
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 382 KLRHP--NRNGVLKEY 395
[73][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 261 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 318
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 319 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 378
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 379 KLRHP--NRNGVLKEY 392
[74][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 100 bits (250), Expect = 5e-20
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++E
Sbjct: 246 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADGENPEDEVS 303
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 304 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 363
Query: 433 KLR 441
KLR
Sbjct: 364 KLR 366
[75][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 100 bits (250), Expect = 5e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 260 PSEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVS 317
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+G+DDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 318 KTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 377
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 378 KLRHP--NRNGVLKEY 391
[76][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C3P6_9FIRM
Length = 415
Score = 100 bits (250), Expect = 5e-20
Identities = 53/124 (42%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ + G+ +V+ + + + SL+TPIG E + D +EDE + +++
Sbjct: 279 PTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIG-EEDDSHLGDFIEDEGVMSPDDYA 337
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
++ L ++++ +LLEL +RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQIEAKAL
Sbjct: 338 ANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKAL 397
Query: 430 RKLR 441
RKL+
Sbjct: 398 RKLK 401
[77][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 100 bits (249), Expect = 7e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 403 KLRHP--NRNGVLKEY 416
[78][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 100 bits (249), Expect = 7e-20
Identities = 54/123 (43%), Positives = 82/123 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 238 PTEEEIATRME-MTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDQVS 295
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355
Query: 433 KLR 441
KLR
Sbjct: 356 KLR 358
[79][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 100 bits (249), Expect = 7e-20
Identities = 60/124 (48%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEF 249
PS +++ AK + +V+ +++ A+ SL+TPIG E + D +ED E A EE
Sbjct: 229 PSPEEI-AKEMNITEDKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDHEARAPAEEA 286
Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
LR ++ +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK L
Sbjct: 287 SFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 346
Query: 430 RKLR 441
RKLR
Sbjct: 347 RKLR 350
[80][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 100 bits (249), Expect = 7e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E +++
Sbjct: 285 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPEQDVA 342
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKALR
Sbjct: 343 KTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALR 402
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 403 KLRHP--NRNGVLKEY 416
[81][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 100 bits (249), Expect = 7e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355
[82][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 100 bits (249), Expect = 7e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355
[83][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 100 bits (249), Expect = 7e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 239 IAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 295
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 296 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 355
[84][TOP]
>UniRef100_A8SUG1 RNA polymerase sigma factor n=1 Tax=Coprococcus eutactus ATCC 27759
RepID=A8SUG1_9FIRM
Length = 399
Score = 100 bits (249), Expect = 7e-20
Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 4/121 (3%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKD-SVEDEREAADEEFGSD 258
+ + GLP RVQ +M+ A+ SL+TPIG E LG ++D S+ EA ++
Sbjct: 269 VGEVMGLPKERVQEIMKIAQEPVSLETPIGEEEDSHLGDFIQDESIPTPVEATNQTL--- 325
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L ++ ++ L ERE RV++LRFG DDG+ TLEE+G+ NVTRERIRQIEAKALRKL
Sbjct: 326 -LHEQLDDVVSTLTEREQRVIKLRFGWDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKL 384
Query: 439 R 441
R
Sbjct: 385 R 385
[85][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 100 bits (249), Expect = 7e-20
Identities = 51/123 (41%), Positives = 85/123 (69%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ AK + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E
Sbjct: 291 PTEEEI-AKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVE 349
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R
Sbjct: 350 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 409
Query: 433 KLR 441
KLR
Sbjct: 410 KLR 412
[86][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 100 bits (248), Expect = 9e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 225 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 281
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 282 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 341
[87][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 100 bits (248), Expect = 9e-20
Identities = 59/136 (43%), Positives = 90/136 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A++ + + +++ + ++A+ SL+TPIG E + D +E + E D++
Sbjct: 268 PTEEEI-AESMEMTIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIEADIENPDQDVA 325
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
+ LR D+E +L L RE V+RLR+GLDDG+ TLEEIG+ +VTRERIRQIEAKAL
Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385
Query: 433 KLRVKTIDVSGKLMEY 480
KLR + +G L EY
Sbjct: 386 KLRHP--NRNGVLKEY 399
[88][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 100 bits (248), Expect = 9e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348
[89][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 100 bits (248), Expect = 9e-20
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A E
Sbjct: 232 VAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 288
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 289 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 348
[90][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 100 bits (248), Expect = 9e-20
Identities = 50/123 (40%), Positives = 85/123 (69%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A+ + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E
Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R
Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426
Query: 433 KLR 441
KLR
Sbjct: 427 KLR 429
[91][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 100 bits (248), Expect = 9e-20
Identities = 50/123 (40%), Positives = 85/123 (69%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ A+ + V +++ ++++A+ SL+ P+ ++ + D +E ++E+ +E
Sbjct: 308 PTEEEI-AEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVE 366
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR+D+E ++ L RE VVR+R+GLDDG+ TLEEIG+ +VTRER+RQIEAKA+R
Sbjct: 367 KSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIR 426
Query: 433 KLR 441
KLR
Sbjct: 427 KLR 429
[92][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 100 bits (248), Expect = 9e-20
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ A+ SL+TPIG E LG + D DE A +
Sbjct: 249 IAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPADAAAFRM 305
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 306 LKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 365
[93][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 99.8 bits (247), Expect = 1e-19
Identities = 63/135 (46%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+A+ + V RV +M+ A+ SL+TPIG + LG + D +E E+ +E
Sbjct: 229 VAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITD---EEAESPEESASFVL 285
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR ++ +L L ERE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 286 LREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLR 345
Query: 442 VKTIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 346 HPS--RSKKLKDYIE 358
[94][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
PS +++ AK +PV RV+ +++ ++ SL+TPIG E LG +KD D +
Sbjct: 300 PSPEEI-AKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKD---DNVPVPAD 355
Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
L+ +E +L L ERE +V+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAK
Sbjct: 356 AAAFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAK 415
Query: 424 ALRKLRVKTIDVSGKLMEYGE 486
ALRKLR + S KL +Y E
Sbjct: 416 ALRKLRHPS--RSRKLKDYLE 434
[95][TOP]
>UniRef100_B8GCU9 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8GCU9_CHLAD
Length = 398
Score = 99.8 bits (247), Expect = 1e-19
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Frame = +1
Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
P LG T +R ++A + S D LA G+ +++ L TA+ SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296
Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
E T+ D + D AD+ S LR + A L +L ERE RV+ LR+GL DG+
Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQPR 355
Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
TLEE+G+A VTRER+RQIE KALRKLR + GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392
[96][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 99.8 bits (247), Expect = 1e-19
Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267
+AK AG+P +V+ ++ T++ SL+TPIG +E + D +ED+ + E+ +LR
Sbjct: 459 IAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESH-LGDFIEDKTVLSPEQHMLKQALR 517
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+R RFGL+D E TLE++G+ VTRERIRQIEAKALRKLR
Sbjct: 518 LQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575
[97][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 99.8 bits (247), Expect = 1e-19
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Frame = +1
Query: 4 PRLLGPTTSREAAESEDEDSFAG--PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPI 177
P +G T +R S G P+ D++ A G+PV +V+ ++E AR SL+TPI
Sbjct: 242 PVHVGETINRVMRASNRIQQTTGRDPTPDEI-ALELGIPVEKVRRVLEAARQTISLETPI 300
Query: 178 GGNELGPTVKDSVEDEREAADEEFGSDS-LRNDMEAMLLELPEREARVVRLRFGLDDGKE 354
G E + D +ED + + S LR +++ L +LPERE R+++LR+GL DG
Sbjct: 301 G-TEGDTVLADFIEDGKGVTPMDSASHHILREQIDSALEKLPERERRIIQLRYGLYDGHY 359
Query: 355 WTLEEIGEALNVTRERIRQIEAKALRKLR 441
TLEE+G +TRERIRQIEA+ LRKLR
Sbjct: 360 RTLEEVGREFGITRERIRQIEARVLRKLR 388
[98][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 99.8 bits (247), Expect = 1e-19
Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ ++ SL+TPIG E LG + D D+ A E
Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345
[99][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 99.8 bits (247), Expect = 1e-19
Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +M+ ++ SL+TPIG E LG + D D+ A E
Sbjct: 229 IAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPSEAAAFTL 285
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 286 LKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 345
[100][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 99.8 bits (247), Expect = 1e-19
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344
[101][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 99.8 bits (247), Expect = 1e-19
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344
[102][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 99.8 bits (247), Expect = 1e-19
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
LAK G+P +V+ +M+ A+ SL+TPIG E + D + DE A E + + L+
Sbjct: 228 LAKEMGMPEEKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAFTMLK 286
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 287 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 344
[103][TOP]
>UniRef100_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G0D3_ABIDE
Length = 409
Score = 99.8 bits (247), Expect = 1e-19
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
P+E+++ AK LPV +V+ +M+ + SLDTPIG + LG +KD D ++
Sbjct: 274 PTEEEI-AKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDFIKD---DTIMGPED 329
Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
L++ ++ +L L ERE RV+ LRFGL DG+ TLEE+G+ NVTRERIRQIEAK
Sbjct: 330 AAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAK 389
Query: 424 ALRKLR 441
ALRKLR
Sbjct: 390 ALRKLR 395
[104][TOP]
>UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM
5476 RepID=C0EE25_9CLOT
Length = 372
Score = 99.8 bits (247), Expect = 1e-19
Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A+ +PV +V+ +M ++ SL+TPIG E + D + D+ A E S +L R
Sbjct: 243 IAEELDMPVDKVREIMRVSQEPVSLETPIGEEE-DSHLSDFIPDDDAPAPAEAASHTLLR 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ +L L ERE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 302 EQLGDVLGTLTEREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 359
[105][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 99.4 bits (246), Expect = 2e-19
Identities = 54/123 (43%), Positives = 82/123 (66%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+E+++ + + + +++ + ++A+ SL+TPIG E + D +E + E ++
Sbjct: 270 PTEEEIATRME-ITIEKLRFIAKSAQLPISLETPIGKEE-DSRLGDFIESDGETPEDRVA 327
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
LR D+E++L L RE V++LR+GLDDG+ TLEEIG+ NVTRERIRQIEAKALR
Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387
Query: 433 KLR 441
KLR
Sbjct: 388 KLR 390
[106][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 99.4 bits (246), Expect = 2e-19
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E
Sbjct: 288 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 344
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L ERE +V++LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 345 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 404
[107][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 99.4 bits (246), Expect = 2e-19
Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
Frame = +1
Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249
+ D +AK G+ V +V+ +M+ ++ SL+TPIG E LG + D D+ A E
Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282
Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 283 AFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342
Query: 430 RKLR 441
RKLR
Sbjct: 343 RKLR 346
[108][TOP]
>UniRef100_A9WAH7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WAH7_CHLAA
Length = 398
Score = 99.4 bits (246), Expect = 2e-19
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Frame = +1
Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
P LG T +R ++A + S D LA G+ +++ L TA+ SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVG 296
Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
E T+ D + D AD+ S LR + A L +L ERE RV+ LR+GL DG+
Sbjct: 297 -EEADSTLADFIPDPHALDADDAAASGMLRQQITAALDQLSERERRVLELRYGLVDGQPR 355
Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
TLEE+G+A VTRER+RQIE KALRKLR + GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392
[109][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 99.4 bits (246), Expect = 2e-19
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSD 258
D+ LA+A L V +V+ + +T+ SL+TP+G E + D + DE+ EA +
Sbjct: 268 DEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEE-DSQLGDFLPDEKLEAPSDAASHQ 326
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
LR + +L +L ERE RV++LRFGL+DG + TLEE+G+ VTRERIRQIE KALRKL
Sbjct: 327 MLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKL 386
Query: 439 R 441
R
Sbjct: 387 R 387
[110][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
RepID=A6LLT9_THEM4
Length = 370
Score = 99.4 bits (246), Expect = 2e-19
Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK G PV +V+ +++ A+ SL+ P+G +E TV D V DE A+ ++ L R
Sbjct: 236 LAKIIGKPVEKVEEILQAAKETTSLEAPVGEDE-DSTVGDFVADESIASPKKEAMRMLIR 294
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E +L L +RE V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 295 EEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLR 352
[111][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 99.4 bits (246), Expect = 2e-19
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E
Sbjct: 282 IAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPSEAAAYSM 338
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L ERE +V++LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 339 LKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 398
[112][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 99.4 bits (246), Expect = 2e-19
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+
Sbjct: 197 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315
Query: 439 R 441
R
Sbjct: 316 R 316
[113][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 99.4 bits (246), Expect = 2e-19
Identities = 56/127 (44%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ + +V+ + + A SL+TPIG E + D +ED+ + +E+
Sbjct: 322 PTAEEIAAEMENITPEKVREIQKIALDPVSLETPIG-EEDDSHLGDFIEDKDALSPDEYA 380
Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
++ L + M+LE L ERE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440
Query: 430 RKLRVKT 450
RKL+ T
Sbjct: 441 RKLKHPT 447
[114][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 99.4 bits (246), Expect = 2e-19
Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
Frame = +1
Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEF 249
+ D +AK G+ V +V+ +M+ ++ SL+TPIG E LG + D D+ A E
Sbjct: 226 QPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAA 282
Query: 250 GSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 283 AFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 342
Query: 430 RKLR 441
RKLR
Sbjct: 343 RKLR 346
[115][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 99.4 bits (246), Expect = 2e-19
Identities = 56/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
+D P+ +++ AK + +V+ + + A SL+TPIG E + D +ED+
Sbjct: 255 QDLGRDPTAEEIAAKMENISPEKVREIQKIALEPVSLETPIG-EEDDSHLGDFIEDKEAL 313
Query: 235 ADEEFGSDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
+ +E+ ++ L ++++ +L L ERE +V+RLRFGL DG+ TLEE+G+ NVTRERIRQ
Sbjct: 314 SPDEYANNQLLKDEINTVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQ 373
Query: 412 IEAKALRKLRVKT 450
IEAKALRKL+ T
Sbjct: 374 IEAKALRKLKHPT 386
[116][TOP]
>UniRef100_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans
RepID=Q3LW61_BIGNA
Length = 389
Score = 99.4 bits (246), Expect = 2e-19
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTV-KDSVEDERE 231
ED P+E+++ + G+P+ +++ L+ + SLD+ I + + DS+ED +
Sbjct: 247 EDKKRYPTEEEI-SLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIEDSKV 305
Query: 232 AADEEFGSD-SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIR 408
E + + SL+ D+ LL L +RE+ V+RLR+GLDDG E TLEEIGE LNVTRER R
Sbjct: 306 INSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTRERAR 365
Query: 409 QIEAKALRKLRVKT 450
QIE KAL+KL+ T
Sbjct: 366 QIEIKALKKLQFNT 379
[117][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 99.0 bits (245), Expect = 2e-19
Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +1
Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-S 255
E + +A LPV +V+ ++ A+ SL+TPIG E + D +ED+ + E+ S
Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDTTSPEQHAAS 297
Query: 256 DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
+ LR+ + +L L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK
Sbjct: 298 EMLRDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357
Query: 436 LR 441
LR
Sbjct: 358 LR 359
[118][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 99.0 bits (245), Expect = 2e-19
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG-SDSLR 267
+AK G+P +V+ ++ T++ SL+TPIG ++ + D +ED+ + E+ +LR
Sbjct: 447 IAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESH-LGDFIEDKTVMSPEQHVLRQALR 505
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L ERE +V+R RFGL+D E+TLE++G+ VTRERIRQIEAKALRKLR
Sbjct: 506 QQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLR 563
[119][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZ85_THERP
Length = 369
Score = 99.0 bits (245), Expect = 2e-19
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A+A +P +++ ++E AR SL+ PIG + + D +EDE + A E S L R
Sbjct: 240 VARALDMPEEKIRQILEAARLPVSLEAPIG-QDGDAFLGDFIEDETQPAPLEIASQQLLR 298
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E L L ERE R++ LR+GL+DG+ TLEE+G +TRERIRQIEAKALRKLR
Sbjct: 299 QQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLR 356
[120][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G4K7_CHLAD
Length = 345
Score = 99.0 bits (245), Expect = 2e-19
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A A G PV R+Q ++E AR SL+TP+G +E T+ D + DE A E + L
Sbjct: 216 IAMALGQPVERIQRILEAARCPVSLETPVG-DEGEHTLGDFITDEELPAPGEIAAQKLLH 274
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
D+ A L +L +RE R++ LR+GL DG+ TLEE+G L +TRER RQIEA+ALR+LR
Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR 332
[121][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 99.0 bits (245), Expect = 2e-19
Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +1
Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258
E + +A LPV +V+ +++ A+ SL+TPIG E + D +ED+ + E+ +
Sbjct: 34 EPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 92
Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
+ D A +L+ L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK
Sbjct: 93 EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 152
Query: 436 LR 441
LR
Sbjct: 153 LR 154
[122][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 99.0 bits (245), Expect = 2e-19
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
+A+ G+ +V+ +M+ A+ SL+TPIG E + D +ED E +A EE LR
Sbjct: 240 IAEKMGISPEKVREIMKVAQEPVSLETPIGEEE-DSHLGDFIEDQEAQAPAEEASYALLR 298
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+ +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR
Sbjct: 299 EQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHP 358
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 359 S--RSKKLKDYLE 369
[123][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 99.0 bits (245), Expect = 2e-19
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E
Sbjct: 240 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 296
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 297 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 356
[124][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/123 (43%), Positives = 81/123 (65%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PSE+++ ++ G+ + +++ME +R+ SL+TP+ + + +S+ E A+E
Sbjct: 455 PSEEEI-CESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCS 513
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
D+LR +E +L L RE V+R+RFGL DG+ TLEE+G NVTRERIRQIE+KAL+
Sbjct: 514 RDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALK 573
Query: 433 KLR 441
KLR
Sbjct: 574 KLR 576
[125][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ A +
Sbjct: 243 PSPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 300
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 430 RKLR 441
RKLR
Sbjct: 361 RKLR 364
[126][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
LAK G+P +V+ +++ A+ SL+TPIG E + D + DE A E + + L+
Sbjct: 243 LAKEMGMPEEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPAEAAAYTMLK 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 302 EQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 359
[127][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
PS +++ A+ +PV RV+ + + ++ SL+TPIG E LG ++D D E
Sbjct: 300 PSPEEI-AENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD---DNVPVPAE 355
Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
S L+ + +L L ERE +V+RLRFG+DDG+ TLEE+G+ NVTRERIRQIEAK
Sbjct: 356 AAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQIEAK 415
Query: 424 ALRKLR 441
ALRKLR
Sbjct: 416 ALRKLR 421
[128][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
RepID=B9K8D5_THENN
Length = 392
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS ++L AK G P +++ ++E A+ SL++PIG +E +++D V DE + ++
Sbjct: 251 PSVEEL-AKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADESVPSPKKEA 308
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
L R ++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KAL
Sbjct: 309 MRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 368
Query: 430 RKLR 441
RKLR
Sbjct: 369 RKLR 372
[129][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E
Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361
[130][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E
Sbjct: 247 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 303
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 304 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 363
[131][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
Length = 407
Score = 98.6 bits (244), Expect = 3e-19
Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R
Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387
[132][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 98.6 bits (244), Expect = 3e-19
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[133][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
RepID=Q59553_MYCSM
Length = 319
Score = 98.6 bits (244), Expect = 3e-19
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA+ +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAP-LGDFIEDSEAMSAENAVISE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[134][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
naphthophila RKU-10 RepID=C7IAE0_9THEM
Length = 407
Score = 98.6 bits (244), Expect = 3e-19
Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R
Sbjct: 271 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 329
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 330 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387
[135][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
14469 RepID=C6LFQ8_9FIRM
Length = 374
Score = 98.6 bits (244), Expect = 3e-19
Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
+A+ +PV+RV+ +++ +R SLDTPIG E + D +ED+ + + + S LR
Sbjct: 245 VAERLNVPVSRVREVLKISRDPVSLDTPIG-EEDDSHLGDFIEDDSALSPSDSAAFSMLR 303
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ L L +RE +VV+LRFGL DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 304 EELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361
[136][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
++K LPV +V+ + + A+ SL+TPIG E LG + D DE A E
Sbjct: 245 ISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DEAPAPAEAAAFTM 301
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 302 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 361
[137][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
17241 RepID=B0PFC0_9FIRM
Length = 361
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +PV +V+ +M A+ SL+TPIG E + D + DE A +
Sbjct: 227 PTAEEISAEL-DMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPDTAA 284
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S +L R + +L L RE +V+RLRFGL+DG+ TLEE+G NVTRERIRQIEAKAL
Sbjct: 285 SHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKAL 344
Query: 430 RKLR 441
RKLR
Sbjct: 345 RKLR 348
[138][TOP]
>UniRef100_P77994 RNA polymerase sigma factor rpoD n=1 Tax=Thermotoga maritima
RepID=RPOD_THEMA
Length = 399
Score = 98.6 bits (244), Expect = 3e-19
Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK G P +++ ++E A+ SL++PIG +E +++D V D+ A+ ++ L R
Sbjct: 263 LAKMMGKPPEKIKEILEAAKETISLESPIGEDE-DSSIEDFVADDSIASPKKEAMRMLMR 321
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E +L L REA V+R+R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 322 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 379
[139][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 98.2 bits (243), Expect = 4e-19
Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
PS +++ + LP +V+ +++ A+ SL+TPIG + LG ++DS E ++ E
Sbjct: 203 PSPEEI-GEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS---EAQSPSE 258
Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
+ L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK
Sbjct: 259 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 318
Query: 424 ALRKLR 441
ALRKLR
Sbjct: 319 ALRKLR 324
[140][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
RepID=Q0SRH3_CLOPS
Length = 366
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
L+K +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E
Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353
[141][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 98.2 bits (243), Expect = 4e-19
Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Frame = +1
Query: 79 EDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSD 258
E + +A LPV +V+ ++ A+ SL+TPIG E + D +ED+ + E+ +
Sbjct: 239 EPEEIAAEMDLPVKKVREALKVAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHAAS 297
Query: 259 SLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 435
+ D A +L+ L +RE V+RLRFGLDDG TLEE+G VTRERIRQIEAKALRK
Sbjct: 298 EMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRK 357
Query: 436 LR 441
LR
Sbjct: 358 LR 359
[142][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 98.2 bits (243), Expect = 4e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+
Sbjct: 222 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 279
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 280 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 339
Query: 430 RKLR 441
RKLR
Sbjct: 340 RKLR 343
[143][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 98.2 bits (243), Expect = 4e-19
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ S+
Sbjct: 197 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 255
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 256 LLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 315
Query: 439 R 441
R
Sbjct: 316 R 316
[144][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
RepID=Q0TNV3_CLOP1
Length = 366
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
L+K +PV +V+ +++ A+ SL+TPIG E LG + D D+ A E
Sbjct: 237 LSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPAPAEAAAFTM 293
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353
[145][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 98.2 bits (243), Expect = 4e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353
Query: 430 RKLR 441
RKLR
Sbjct: 354 RKLR 357
[146][TOP]
>UniRef100_C9LLN1 RNA polymerase sigma factor RpoD n=1 Tax=Dialister invisus DSM
15470 RepID=C9LLN1_9FIRM
Length = 388
Score = 98.2 bits (243), Expect = 4e-19
Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
LAKA G+ V +++ + + A+ SL+TPIG E + D +ED E A D+ GS LR
Sbjct: 263 LAKAMGVSVAKIREVKKIAQDPISLETPIGEKE-DSHLGDFIEDHEAIAPDDAAGSILLR 321
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L EL +RE +V+ LRFGL DG+ TLEE+G+ +VTRERIRQIE KAL KL+
Sbjct: 322 EQIDELLRELTDRERQVLELRFGLKDGRPRTLEEVGKYFDVTRERIRQIEGKALTKLK 379
[147][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403
[148][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++
Sbjct: 229 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 287
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 288 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 339
[149][TOP]
>UniRef100_C5EQF6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EQF6_9FIRM
Length = 381
Score = 98.2 bits (243), Expect = 4e-19
Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369
[150][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4FZZ1_ABIDE
Length = 372
Score = 98.2 bits (243), Expect = 4e-19
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS-LR 267
+ K + +V+ +M+ A+ S +TPIG E + D + D+ A E + + L+
Sbjct: 243 IGKELNMEPEKVRSIMKIAQEPVSFETPIGEEE-DSHIGDFIPDDSNMAPVEAATHAILK 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E +L L EREARV++LRFGL+DG+ TLEE+G+ NVTRERIRQIE+KALRKLR
Sbjct: 302 EQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQP 361
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 362 S--RSRKLKDYLE 372
[151][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 98.2 bits (243), Expect = 4e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353
Query: 430 RKLR 441
RKLR
Sbjct: 354 RKLR 357
[152][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403
[153][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 98.2 bits (243), Expect = 4e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+
Sbjct: 236 PTPEEIGAEM-NMPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353
Query: 430 RKLR 441
RKLR
Sbjct: 354 RKLR 357
[154][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++
Sbjct: 299 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 357
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 358 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 409
[155][TOP]
>UniRef100_C0CZ55 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZ55_9CLOT
Length = 381
Score = 98.2 bits (243), Expect = 4e-19
Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369
[156][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E++
Sbjct: 293 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEDHASYELLKEQLESV 351
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 352 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 403
[157][TOP]
>UniRef100_A8S2E6 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S2E6_9CLOT
Length = 381
Score = 98.2 bits (243), Expect = 4e-19
Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
LA+A + +V +M+ AR ASL+TPIG E + D V D E S LR
Sbjct: 253 LAEALDMTEDKVMEIMQIAREPASLETPIG-EEDDSNLGDFVADNNVVTPEGNVESVMLR 311
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++A+L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 312 EHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 369
[158][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 98.2 bits (243), Expect = 4e-19
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A+ + V RV+ +M+ A+ SL+TPIG E + D +ED+ A E S L +
Sbjct: 239 IAREMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPAEAASFMLLK 297
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 298 EQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355
[159][TOP]
>UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA
Length = 345
Score = 97.8 bits (242), Expect = 5e-19
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A A G PV R+Q ++E AR SL+TP+G +E T+ D + DE E + L R
Sbjct: 216 IAMALGQPVERIQRILEAARRPVSLETPVG-DEGEHTLGDFLTDEELPTPGEMAAQKLLR 274
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
D+ A L L +RE R++ LR+GL DG+ TLEE+G L +TRER RQIEA+ALR+LR
Sbjct: 275 RDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEALRRLR-- 332
Query: 448 TIDVSGKLMEYGE 486
+ +V L +Y E
Sbjct: 333 SPEVGQHLRDYLE 345
[160][TOP]
>UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271
RepID=C4FWR1_9FIRM
Length = 379
Score = 97.8 bits (242), Expect = 5e-19
Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-RNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +EDE + E F S +L R +E +
Sbjct: 256 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDEGAMSPEVFTSSALLREQLEDV 314
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG TLE++G+ VTRERIRQIEAKALRKLR
Sbjct: 315 LDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLR 366
[161][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +P +V+ +++ A+ SL+TPIG E + D +ED+ + E+
Sbjct: 236 PTPEEIGAEM-NVPTNKVRDILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHA 293
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 294 SYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 353
Query: 430 RKLR 441
RKLR
Sbjct: 354 RKLR 357
[162][TOP]
>UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0EUX7_9FIRM
Length = 422
Score = 97.8 bits (242), Expect = 5e-19
Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDER-EAADEEFGSDSLR 267
+A+A LPV RV + + ++ SL+TPIG E + D ++DE +E LR
Sbjct: 292 IAEAMNLPVERVLEISKISQEPVSLETPIGEEE-DSHLGDFIQDEHIPVPADEAAHTLLR 350
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E ++ L ERE +V+ LRFGL+DGK TLEE+G VTRERIRQIEAKALRKLR
Sbjct: 351 EQLEKVMDTLSEREQKVLALRFGLEDGKPHTLEEVGREFQVTRERIRQIEAKALRKLRHP 410
Query: 448 T 450
T
Sbjct: 411 T 411
[163][TOP]
>UniRef100_B1C762 RNA polymerase sigma factor n=1 Tax=Anaerofustis stercorihominis
DSM 17244 RepID=B1C762_9FIRM
Length = 403
Score = 97.8 bits (242), Expect = 5e-19
Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK GLP +V+ +M+ ++ SL+TPIG E + D + D+ A EE S L R
Sbjct: 275 IAKEMGLPEEKVRDIMKISQDPVSLETPIGEEE-DSHLGDFIPDDDAVAPEEAASYMLLR 333
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+ +L L +REA+V+ LRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 334 TQLFEVLKTLTDREAKVLILRFGLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHP 393
Query: 448 T 450
T
Sbjct: 394 T 394
[164][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 97.4 bits (241), Expect = 6e-19
Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
+AK L +V+ +M+ A+ SL+TPIG E + D +ED+ A + + + L+
Sbjct: 246 IAKEMELSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAAAYELLK 304
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 305 EQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 362
[165][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 97.4 bits (241), Expect = 6e-19
Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ + + ++ SL+TPIG E + D ++D+ E + +L +
Sbjct: 243 VAKEMNIPVERVREIQKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAFTLLK 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+ +L L +RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 302 EQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHP 361
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 362 S--RSRKLKDYLE 372
[166][TOP]
>UniRef100_A7NN17 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NN17_ROSCS
Length = 351
Score = 97.4 bits (241), Expect = 6e-19
Identities = 57/132 (43%), Positives = 80/132 (60%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSLRN 270
+A+A G+P +V+ML++ + SL+ PI + G + +D +A E L+
Sbjct: 222 IAEAVGMPERKVKMLLQASAQPISLEQPITNDGEGQIGELLADDGADAPMEIATQHMLQR 281
Query: 271 DMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVKT 450
D+E L++LP+RE V+RLR+GL DG+ TLEEIG A +TRER RQIEA ALR LR
Sbjct: 282 DLEQALMDLPDRERAVLRLRYGLTDGRRRTLEEIGSAFGITRERTRQIEADALRLLR--R 339
Query: 451 IDVSGKLMEYGE 486
VS +L Y E
Sbjct: 340 PGVSARLQAYLE 351
[167][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 97.4 bits (241), Expect = 6e-19
Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA+ +G+P ++ L+E +R SLD P+G +E P + D +ED E +A+ S+
Sbjct: 187 DEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVISE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ +L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 246 LLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[168][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
RepID=C1F1D9_ACIC5
Length = 597
Score = 97.4 bits (241), Expect = 6e-19
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+A+ +PV +V+ +++ A+ SL+TPIG E LG ++DS + + E S +
Sbjct: 463 IARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDS---QAVSPSEAVISVN 519
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ +L L RE RV+++RFGL+DG E TLEE+G++ VTRERIRQIEAKALRKLR
Sbjct: 520 LKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579
Query: 442 VKTIDVSGKLMEYGENLEMLMDGSREM 522
+ L +D +REM
Sbjct: 580 HPS---------RSRKLRAFVDNAREM 597
[169][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 97.4 bits (241), Expect = 6e-19
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ A +
Sbjct: 240 PAPEEIAAEM-DLSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 297
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 298 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357
Query: 430 RKLR 441
RKLR
Sbjct: 358 RKLR 361
[170][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FBN4_9CLOT
Length = 372
Score = 97.4 bits (241), Expect = 6e-19
Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS ++L A+ +PV RV+ +M+ ++ SL+TPIG E + D ++D+ +
Sbjct: 238 PSAEEL-AEKLDMPVERVREIMKISQDPVSLETPIGEEE-DSHLGDFIQDDHVQVPVDAA 295
Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L ++ +L+ L +RE +V+RLRFGLDDG+ TLEE+G NVTRERIRQIEAKAL
Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355
Query: 430 RKLR 441
RKLR
Sbjct: 356 RKLR 359
[171][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
RepID=B6FWI1_9CLOT
Length = 388
Score = 97.4 bits (241), Expect = 6e-19
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK L V +V+ +M+ A+ SL+TPIG E LG + D D+ A D
Sbjct: 259 IAKEMDLSVEKVREIMKIAQDPVSLETPIGEEEDSHLGDFIPD---DDAPAPDISAAYSL 315
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ ++ +L L ERE +V++LRFGL+DG+ TLEE+G+ +VTRERIRQIEAKALRKLR
Sbjct: 316 LKEQIDEVLGSLNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 375
[172][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 97.4 bits (241), Expect = 6e-19
Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++DE +
Sbjct: 229 PSPEEI-AEEMDIPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDENVPVPADAA 286
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L + ++ +L L ERE +V+RLRFGLDD + TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 287 AFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKAL 346
Query: 430 RKLR 441
RKLR
Sbjct: 347 RKLR 350
[173][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 97.4 bits (241), Expect = 6e-19
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK G+ +V+ ++ +A+ SL+TPIG +E +KD +ED+ EE+ S L R
Sbjct: 442 IAKHLGMTPDKVRKVLRSAQEPISLETPIGDDE-DTFLKDFIEDKSVPNPEEYVSRKLLR 500
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L ++E ++R R+GL DG E+TLE++G+ NVTRERIRQIE+KA+RKLR
Sbjct: 501 EQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLR 558
[174][TOP]
>UniRef100_A8PL36 RNA polymerase sigma factor n=1 Tax=Rickettsiella grylli
RepID=A8PL36_9COXI
Length = 642
Score = 97.4 bits (241), Expect = 6e-19
Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +DL +K GLP +++ +++ A+ S++TPIG + + D +ED + +
Sbjct: 505 PSPEDL-SKKMGLPEDKIRKILKIAKEPISMETPIGDEDGDSHLGDFIEDAAALSPIDAA 563
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + LR + +L L REA+V+R+RFG+D + TLEE+G+ +VTRERIRQIEAKAL
Sbjct: 564 TIEGLRETAQRVLASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 623
Query: 430 RKLRVKT 450
RKLR T
Sbjct: 624 RKLRHPT 630
[175][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
intracellulare ATCC 13950 RepID=UPI0001B45B52
Length = 319
Score = 97.1 bits (240), Expect = 8e-19
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 187 DEELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[176][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
ATCC 12478 RepID=UPI0001AF41E8
Length = 319
Score = 97.1 bits (240), Expect = 8e-19
Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA+ +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 187 DEELAEESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[177][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 199 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 257
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 258 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 317
[178][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 97.1 bits (240), Expect = 8e-19
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E +
Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359
[179][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 97.1 bits (240), Expect = 8e-19
Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
+AK G+P +V+ ++ T++ SL+TPIG +E + D +ED+ + E ++LR
Sbjct: 455 IAKKVGMPAEKVKKILRTSQEPISLETPIGTDE-ETHLGDFIEDKSVLSPEAHMLKNALR 513
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+R RFGL+D E TLE++G+ VTRERIRQIEAKALRKLR
Sbjct: 514 MQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 571
[180][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 284 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 342
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 343 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 402
[181][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8W3K2_9FIRM
Length = 359
Score = 97.1 bits (240), Expect = 8e-19
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
+AK + +V+ +M+ A+ SL+TPIG E + D +ED + A EE LR
Sbjct: 230 IAKEMNITEDKVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDHDARAPAEEASFTLLR 288
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L +RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR
Sbjct: 289 EQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLR 346
[182][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 286 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404
[183][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 97.1 bits (240), Expect = 8e-19
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
+AK L +V+ +M+ A+ SL+TPIG E + D +ED A E + + L+
Sbjct: 196 IAKEMDLTPDKVREIMKIAQEPVSLETPIG-EENDSNLGDFIEDHDAPAPAEAAAYELLK 254
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L ERE V+RLRFG+DDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 255 EQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLR 312
[184][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 285 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 343
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 344 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 403
[185][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 208 EILAERLGMEVDKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 266
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 267 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 326
[186][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 97.1 bits (240), Expect = 8e-19
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E +
Sbjct: 249 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 307
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359
[187][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
RepID=C1IAB3_9CLOT
Length = 370
Score = 97.1 bits (240), Expect = 8e-19
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
++K LPV +V+ + + A+ SL+TPIG E LG + D D+ A E
Sbjct: 241 ISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 297
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 298 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 357
[188][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 97.1 bits (240), Expect = 8e-19
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E+ S + L+ +E +
Sbjct: 250 MPTDKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEV 308
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 309 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 360
[189][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 97.1 bits (240), Expect = 8e-19
Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++D+ E
Sbjct: 248 PTPEEIAAEL-DMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAA 305
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L + ++ +L L ERE +V+RLRFG+DDG+ TLEE+G+ +VTRERIRQIEAKAL
Sbjct: 306 AQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKAL 365
Query: 430 RKLR 441
RKLR
Sbjct: 366 RKLR 369
[190][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L +
Sbjct: 242 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 300
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+RLRFG++DG+ TLEE+G+ +VTRERIRQIEAKALRKLR
Sbjct: 301 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 358
[191][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS- 261
++LA+ G+ V +++ + E + SL+TP+G E + D VED++ + E + +
Sbjct: 286 EILAERLGMEVEKIKAIQEMNQEPISLETPVGSEE-DSELGDFVEDQKTTSPYEATNRAI 344
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR +++A+L L RE +V+R R+GLDD TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 345 LREELDAVLKTLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLR 404
[192][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 97.1 bits (240), Expect = 8e-19
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L +
Sbjct: 254 IAKELDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 312
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+RLRFG++DG+ TLEE+G+ +VTRERIRQIEAKALRKLR
Sbjct: 313 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLR 370
[193][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 96.7 bits (239), Expect = 1e-18
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLR 267
+AK L +V+ +M+ ++ SL+TPIG E + D +ED+ A + S + L+
Sbjct: 238 IAKEMELSTDKVREIMKISQEPVSLETPIG-EENDSNLGDFIEDQDALAPADAASYELLK 296
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L ERE V+RLRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 297 EQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLR 354
[194][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 96.7 bits (239), Expect = 1e-18
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AK + V RV+ +M+ A+ SL+TPIG E LG + D D+ A E
Sbjct: 237 IAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPD---DDALAPAEAAAFTM 293
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 294 LKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLR 353
[195][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
RepID=A0QIP2_MYCA1
Length = 319
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 187 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[196][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+PV ++ L++ +R SLD P+G +E P + D +ED E +A+ +
Sbjct: 190 DEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAESAVIAG 248
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L +D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 249 LLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 308
Query: 439 R 441
R
Sbjct: 309 R 309
[197][TOP]
>UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii
serovar Hardjo-bovis RepID=Q04T13_LEPBJ
Length = 585
Score = 96.7 bits (239), Expect = 1e-18
Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Frame = +1
Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234
F ++ +A+ G PV +V+M+ AR SL+ P+G +ELG + D+ E E
Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502
Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
S L + +L LP RE +V+R+RFGLDDG TLEE+G VTRERIRQI
Sbjct: 503 PVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562
Query: 415 EAKALRKLR 441
EAKALR+LR
Sbjct: 563 EAKALRRLR 571
[198][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 96.7 bits (239), Expect = 1e-18
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+ + G+P +V+ +++ A+ SL+TPIG E + D +EDE A S +L R
Sbjct: 229 IGEEMGMPAEKVREILKIAQEPVSLETPIGEEE-DSHLGDFIEDEDAPAPASAASFTLLR 287
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
++ +L L +RE RV+ LRFGL+DG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 288 EQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHP 347
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 348 S--RSKKLKDYLE 358
[199][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 96.7 bits (239), Expect = 1e-18
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDE-REAADEEFGSDSLR 267
+A+ + +V+ + + A+ SL+TPIG E + D +ED+ +A EE LR
Sbjct: 231 IAREMDISEDKVREIQKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAQAPAEEASFTLLR 289
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE RV+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK LRKLR
Sbjct: 290 EQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLR 347
[200][TOP]
>UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328
RepID=B0S1K1_FINM2
Length = 388
Score = 96.7 bits (239), Expect = 1e-18
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
+D P+ +++ AK G+ V +V+ + + A+ SL+TPIG E LG ++D D
Sbjct: 248 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 303
Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
A DE LR ++E +L L ERE +V+ LRFGL DG TLEE+G+ +VTRERI
Sbjct: 304 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 363
Query: 406 RQIEAKALRKLR 441
RQIEAKALRKL+
Sbjct: 364 RQIEAKALRKLK 375
[201][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 96.7 bits (239), Expect = 1e-18
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADE 243
PS +++ AK + +V+ +++ A+ SL+TPIG E LG ++D+ + A E
Sbjct: 233 PSPEEI-AKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA---DARAPAE 288
Query: 244 EFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAK 423
E LR ++ +L L +RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAK
Sbjct: 289 EASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAK 348
Query: 424 ALRKLR 441
LRKLR
Sbjct: 349 TLRKLR 354
[202][TOP]
>UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT65_MYCUA
Length = 323
Score = 96.7 bits (239), Expect = 1e-18
Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+PV ++ L+E +R SLD P+G +E P + D +ED E +A+ ++
Sbjct: 191 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAP-LGDFIEDAEAMSAENAVIAE 249
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 309
Query: 439 R 441
R
Sbjct: 310 R 310
[203][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
RepID=P77906_MYCTU
Length = 345
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331
Query: 439 R 441
R
Sbjct: 332 R 332
[204][TOP]
>UniRef100_P77842 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P77842_CHLAU
Length = 398
Score = 96.7 bits (239), Expect = 1e-18
Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Frame = +1
Query: 4 PRLLGPTTSR-EAAESEDEDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIG 180
P LG T +R ++A + S D LA G+ ++ + TA+ SL TP+G
Sbjct: 237 PVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLATVRRTAQDPVSLATPVG 296
Query: 181 GNELGPTVKDSVEDEREA-ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEW 357
E T+ D + D AD+ S +R + A L +L ERE RV+ LR+GL DG+
Sbjct: 297 -EEANSTLADFIPDPHALDADDAAASGIVRQQITAALDQLSERERRVLELRYGLVDGQPR 355
Query: 358 TLEEIGEALNVTRERIRQIEAKALRKLRVKTIDVSGKLME 477
TLEE+G+A VTRER+RQIE KALRKLR + GKL++
Sbjct: 356 TLEEVGKAFGVTRERVRQIEVKALRKLRHPRL---GKLLK 392
[205][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 96.7 bits (239), Expect = 1e-18
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK + V RV+ +M+ A+ SL+TPIG E + D +ED+ A + S L +
Sbjct: 244 IAKEMEIGVDRVREIMKIAQEPVSLETPIGEEE-DSHLGDFIEDQDAPAPADAASFMLLK 302
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 303 EQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLR 360
[206][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H3D6_9FIRM
Length = 359
Score = 96.7 bits (239), Expect = 1e-18
Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Frame = +1
Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAAD-EEFGSDSLRNDMEAMLLEL 297
RV+ L++ A+ SL+TP+G E ++D ++DE +E G + LR ++ +L L
Sbjct: 239 RVRELLQLAQDPISLETPVGEEE-DAHLEDFIQDEEAGVPVDEAGRELLRRELANVLKSL 297
Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
RE RV+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 298 TPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345
[207][TOP]
>UniRef100_C5EQH6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EQH6_9FIRM
Length = 409
Score = 96.7 bits (239), Expect = 1e-18
Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ A+ G+P RV L++ + SL+TP+G E G + D V D+ A+ E+
Sbjct: 274 PSTEEI-AEEVGMPEKRVTELIQASGDTVSLETPVGDEE-GSNLGDFVADDANASTEDKA 331
Query: 253 -SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
S LR +++AML L RE V+ LRFGL+ G TLEE+G NVTRERIRQIE AL
Sbjct: 332 ESFLLREEIDAMLQGLNPREREVIILRFGLETGHPLTLEEVGRRFNVTRERIRQIETAAL 391
Query: 430 RKLR 441
RKLR
Sbjct: 392 RKLR 395
[208][TOP]
>UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis
RepID=C0ZYS7_RHOE4
Length = 323
Score = 96.7 bits (239), Expect = 1e-18
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
DD LA+ +G+P ++ L++ +R SLD P+G +E P + D +ED E +A+ +
Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 250 LLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309
Query: 439 RVKTIDVSGKLMEY 480
RV D + KL Y
Sbjct: 310 RVG--DRAEKLRSY 321
[209][TOP]
>UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516
RepID=C2HGK9_PEPMA
Length = 389
Score = 96.7 bits (239), Expect = 1e-18
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
+D P+ +++ AK G+ V +V+ + + A+ SL+TPIG E LG ++D D
Sbjct: 249 QDLGRDPTNEEI-AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDSHLGDFIED---DT 304
Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
A DE LR ++E +L L ERE +V+ LRFGL DG TLEE+G+ +VTRERI
Sbjct: 305 AIAPDEAANFTMLREELEGILNTLNERERKVLALRFGLVDGTPRTLEEVGKDFDVTRERI 364
Query: 406 RQIEAKALRKLR 441
RQIEAKALRKL+
Sbjct: 365 RQIEAKALRKLK 376
[210][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 96.7 bits (239), Expect = 1e-18
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ A+ +PV RV+ +++ ++ SL+TPIG E + D ++D+ +
Sbjct: 292 PSPEEIAAEM-NMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPADAA 349
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ +L + +E +L L ERE +V+ LRFGL+DG+ TLEE+G+ NVTRERIRQIEAKAL
Sbjct: 350 AFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 409
Query: 430 RKLRVKTIDVSGKLMEYGE 486
RKLR + S KL +Y E
Sbjct: 410 RKLRHPS--RSRKLKDYLE 426
[211][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+AK +PV RV+ +++ ++ SL+TPIG E + D ++D+ E + +L +
Sbjct: 243 IAKEMDMPVERVREILKISQEPVSLETPIGEEE-DSHLGDFIQDDNVPVPAEAAAQTLLK 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L L ERE +V+RLRFG++DG+ TLEE+G +VTRERIRQIEAKALRKLR
Sbjct: 302 EQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLR 359
[212][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
RepID=A7VZA6_9CLOT
Length = 365
Score = 96.7 bits (239), Expect = 1e-18
Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264
D +A +PV +V+ +M A+ SL+TPIG E + D + D+ A + S L
Sbjct: 234 DEIALELDMPVDKVREIMRVAQEPVSLETPIGEEE-DSHLGDFIPDDDAPAPADAASHIL 292
Query: 265 RNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+ A +L+ L RE +V+RLRFGL+DG+ TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 293 LKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 352
[213][TOP]
>UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis
complex RepID=A5WQW2_MYCTF
Length = 345
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 271
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 272 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 331
Query: 439 R 441
R
Sbjct: 332 R 332
[214][TOP]
>UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans
RepID=RPOD_LEPIC
Length = 585
Score = 96.7 bits (239), Expect = 1e-18
Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Frame = +1
Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGG---NELGPTVKDSVEDEREA 234
F ++ +A+ G PV +V+M+ AR SL+ P+G +ELG + D+ E E
Sbjct: 446 FGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDT---EVET 502
Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
S L + +L LP RE +V+R+RFGLDDG TLEE+G VTRERIRQI
Sbjct: 503 PVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQI 562
Query: 415 EAKALRKLR 441
EAKALR+LR
Sbjct: 563 EAKALRRLR 571
[215][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Frame = +1
Query: 121 RVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAMLLEL 297
+V+ +++ A+ SL+TPIG E + D +ED+ + EE S + L+ +E++L L
Sbjct: 250 KVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTL 308
Query: 298 PEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 309 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356
[216][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 96.3 bits (238), Expect = 1e-18
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A + V RV+ +M+ A+ SL+TPIG E + D + DE A E S L +
Sbjct: 238 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 296
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 297 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 356
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 357 S--RSKKLKDYLE 367
[217][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 96.3 bits (238), Expect = 1e-18
Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDE 225
+D PS +++ + LP +V+ +++ A+ SL+TPIG + LG ++D +D
Sbjct: 226 QDLGRDPSPEEI-GEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIED--QDA 282
Query: 226 REAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERI 405
+ AD + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERI
Sbjct: 283 QSPADHA-AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 341
Query: 406 RQIEAKALRKLR 441
RQIEAKALRKLR
Sbjct: 342 RQIEAKALRKLR 353
[218][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 96.3 bits (238), Expect = 1e-18
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
+A + V RV+ +M+ A+ SL+TPIG E + D + DE A E S L +
Sbjct: 243 IAVQMDISVERVREIMKIAQEPVSLETPIGEEE-DSHLGDFIPDEDAPAPSEAASFILLK 301
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+E +L L RE +V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 302 EQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 361
Query: 448 TIDVSGKLMEYGE 486
+ S KL +Y E
Sbjct: 362 S--RSKKLKDYLE 372
[219][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
RepID=B7ICM7_THEAB
Length = 371
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK G PV +V+ +++ A+ SL+ P+G ++ TV D + DE A+ ++ L R
Sbjct: 237 LAKLIGKPVEKVEEILQAAKETTSLEAPVGEDD-DSTVGDFIADETIASPKKEAMRMLIR 295
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
+++ +L L +RE V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 296 EEVDKVLETLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 353
[220][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLY9_MYCMM
Length = 333
Score = 96.3 bits (238), Expect = 1e-18
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+PV ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 201 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 259
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 260 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 319
Query: 439 R 441
R
Sbjct: 320 R 320
[221][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 96.3 bits (238), Expect = 1e-18
Identities = 50/123 (40%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Frame = +1
Query: 76 SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFG 252
+ D+ LA+ +G+PV ++ L++ +R SLD P+G +E P + D +ED E +A+
Sbjct: 189 ASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAP-LGDFIEDTEAMSAENAVI 247
Query: 253 SDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALR 432
++ L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + +
Sbjct: 248 AELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMA 307
Query: 433 KLR 441
KLR
Sbjct: 308 KLR 310
[222][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 96.3 bits (238), Expect = 1e-18
Identities = 63/144 (43%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Frame = +1
Query: 64 FAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREA 234
F + + +AK LP +V+ +++ A+ SL+TPIG E LG + D D+ A
Sbjct: 234 FGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD---DDAPA 290
Query: 235 ADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQI 414
E L+ + +L L RE +V+RLRFGLDDG+ TLEE+G+ +VTRERIRQI
Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350
Query: 415 EAKALRKLRVKTIDVSGKLMEYGE 486
EAKALRKLR + S KL +Y E
Sbjct: 351 EAKALRKLRHPS--RSKKLKDYLE 372
[223][TOP]
>UniRef100_Q069K1 RNA polymerase sigma factor (Fragment) n=1 Tax=Fusobacterium
necrophorum RepID=Q069K1_9FUSO
Length = 185
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = +1
Query: 85 DLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL 264
++LA+ G+ V +V+ + E + SL+TP+G E + D VED++ E + SL
Sbjct: 53 EILAERLGMEVEKVKSIQEMNQDPISLETPVGSEE-DSELGDFVEDQKMLTPYELTNRSL 111
Query: 265 -RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
R ++++L L RE +V+R R+GLDDG TLEE+G+ VTRERIRQIE KALRKLR
Sbjct: 112 LREQLDSVLGSLSSREEKVLRYRYGLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLR 171
[224][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 96.3 bits (238), Expect = 1e-18
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS++++ A+ P RV+ + ++ SL+TPIG E + D +ED + E+
Sbjct: 835 PSDEEIAAEMKIEP-ERVEEIKRISQMPVSLETPIGEEE-DSQLGDFIEDRSLPSPEDVA 892
Query: 253 SDSL-RNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+D+L + +E ML L +RE V+R RFGL+DG+ +TLEE+G VTRERIRQIEAKAL
Sbjct: 893 ADNLLQEQIEEMLNALSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKAL 952
Query: 430 RKLR 441
RKLR
Sbjct: 953 RKLR 956
[225][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E +
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356
[226][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E +
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDV 304
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 305 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 356
[227][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 96.3 bits (238), Expect = 1e-18
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
+D PS +++ + LP +V+ +++ A+ SL+TPIG E + D +ED+
Sbjct: 249 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAT 306
Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
+ + + + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G VTRERIRQ
Sbjct: 307 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 366
Query: 412 IEAKALRKLR 441
IEAKALRKLR
Sbjct: 367 IEAKALRKLR 376
[228][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 96.3 bits (238), Expect = 1e-18
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Frame = +1
Query: 76 SEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGN---ELGPTVKDSVEDEREAADEE 246
+ ++ +A+ GL V +++ ++++A++ S++ PIG + LG V D+ D E A
Sbjct: 439 ARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDA--- 495
Query: 247 FGSDSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKA 426
+R D+E +L L RE V+RLRFGLDDG+ TLEEIG+ VTRERIRQIEAKA
Sbjct: 496 IVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKA 555
Query: 427 LRKLR 441
+RKLR
Sbjct: 556 MRKLR 560
[229][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 95.9 bits (237), Expect = 2e-18
Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E++
Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359
[230][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 95.9 bits (237), Expect = 2e-18
Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ L +V+ +M+ A+ SL+TPIG E + D +ED+ A +
Sbjct: 242 PTPEEIAAEME-LSTDKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALAPADAA 299
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 300 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359
Query: 430 RKLR 441
RKLR
Sbjct: 360 RKLR 363
[231][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV3_MYCLB
Length = 319
Score = 95.9 bits (237), Expect = 2e-18
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
D+ LA +G+P+ ++ L+E +R SLD P+G E P + D +ED E +A+ ++
Sbjct: 187 DEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAP-LGDFIEDAEAMSAENAVIAE 245
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L D+ ++L L ERE +V+RLRFGLDDG+ TL++IG+ ++RER+RQIE + KL
Sbjct: 246 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKL 305
Query: 439 R 441
R
Sbjct: 306 R 306
[232][TOP]
>UniRef100_B0SHG5 RNA polymerase sigma factor n=2 Tax=Leptospira biflexa serovar
Patoc RepID=B0SHG5_LEPBA
Length = 590
Score = 95.9 bits (237), Expect = 2e-18
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS D++ A+ G PV +V+ + AR SL+ P+G E + D +ED+ +
Sbjct: 456 PSNDEI-AERLGWPVQKVKAVKNVAREPISLEIPVGSEE-DSELGDFIEDKEVISPLNSA 513
Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ S+ ++ +L+ LP RE +V+R+RFGLDDG TLEE+G VTRERIRQIEAKAL
Sbjct: 514 ASSILSEQIRQVLQTLPAREQKVIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIEAKAL 573
Query: 430 RKLR 441
R+LR
Sbjct: 574 RRLR 577
[233][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[234][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[235][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[236][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 219 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 277
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 278 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 329
[237][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[238][TOP]
>UniRef100_C2KW80 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268
RepID=C2KW80_9FIRM
Length = 385
Score = 95.9 bits (237), Expect = 2e-18
Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADE-EFGSDSLR 267
LA+ + +VQ +M+ AR ASL+TPIG E + D V D + E S LR
Sbjct: 256 LAEHLDMTEEKVQEIMQIAREPASLETPIG-EEDDSNLGDFVADTNVLSPEGNVESVMLR 314
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++ +L +L ERE +V+ LRFGL+DG TLEE+G+ NVTRERIRQIEAKALRKLR
Sbjct: 315 EHIDTLLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLR 372
[239][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 95.9 bits (237), Expect = 2e-18
Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
+P +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E++
Sbjct: 249 MPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESV 307
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 308 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 359
[240][TOP]
>UniRef100_C1QEG0 RNA polymerase sigma factor n=1 Tax=Brachyspira murdochii DSM 12563
RepID=C1QEG0_9SPIR
Length = 587
Score = 95.9 bits (237), Expect = 2e-18
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSDS 261
+AKA G P +RV+ + A+ SL+ PIG E LG ++D E E+
Sbjct: 457 IAKALGWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDK---EFESPQNITTFKI 513
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
LR ++++L LP+RE +V+R+RFGL DG TLEE+G VTRERIRQIEAKA+R+LR
Sbjct: 514 LRKQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLR 573
Query: 442 VKT 450
++
Sbjct: 574 AQS 576
[241][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 95.9 bits (237), Expect = 2e-18
Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
P+ +++ A+ L V +V+ +M+ A+ SL+TPIG E + D +ED+ +
Sbjct: 243 PTPEEIAAEME-LSVEKVREIMKIAQEPVSLETPIG-EEDDSHLGDFIEDQEALTPADAA 300
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + L+ +E +L L ERE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 430 RKLR 441
RKLR
Sbjct: 361 RKLR 364
[242][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED E ++ + + L+ +E +
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[243][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 95.5 bits (236), Expect = 2e-18
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 55 EDSFAGPSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREA 234
+D PS +++ + LP +V+ +++ A+ SL+TPIG E + D +ED+
Sbjct: 234 QDLGRDPSPEEI-GEEMDLPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAT 291
Query: 235 ADEEFGS-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQ 411
+ + + + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G VTRERIRQ
Sbjct: 292 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQ 351
Query: 412 IEAKALRKLR 441
IEAKALRKLR
Sbjct: 352 IEAKALRKLR 361
[244][TOP]
>UniRef100_Q1IIK4 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter
versatilis Ellin345 RepID=Q1IIK4_ACIBL
Length = 574
Score = 95.5 bits (236), Expect = 2e-18
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ AK +PV +V+ +++ A+ SL+TPIG E + D +ED + E
Sbjct: 436 PSSEEI-AKRMDIPVAKVRKVLKIAQEPISLETPIGEEE-DSHLGDFIEDRSMVSPAEAV 493
Query: 253 SDSLRNDMEAMLLE-LPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ D A +L L RE +V+++RFGL+DG E TLEE+G++ VTRERIRQIEAKAL
Sbjct: 494 INVNLKDQTAQVLRTLTAREEKVIKMRFGLEDGSEHTLEEVGQSFAVTRERIRQIEAKAL 553
Query: 430 RKLR 441
RKLR
Sbjct: 554 RKLR 557
[245][TOP]
>UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S1K1_RHOSR
Length = 323
Score = 95.5 bits (236), Expect = 2e-18
Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 82 DDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSD 258
DD LA+ +G+P ++ L++ +R SLD P+G +E P + D +ED E +A+ +
Sbjct: 191 DDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAP-LGDFIEDSEATSAENAVIAG 249
Query: 259 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 438
L +D+ ++L L ERE +V+RLR+GLDDG+ TL++IG+ ++RER+RQIE + + KL
Sbjct: 250 LLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKL 309
Query: 439 R 441
R
Sbjct: 310 R 310
[246][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 95.5 bits (236), Expect = 2e-18
Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 73 PSEDDLLAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFG 252
PS +++ AK L +V+ +++ A+ SL+TPIG E + D +ED+ A ++
Sbjct: 230 PSPEEI-AKEMELTPEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDAMAPQDAA 287
Query: 253 S-DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKAL 429
+ + L+ +E +L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKAL
Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347
Query: 430 RKLR 441
RKLR
Sbjct: 348 RKLR 351
[247][TOP]
>UniRef100_A8F8P3 RNA polymerase sigma factor n=1 Tax=Thermotoga lettingae TMO
RepID=A8F8P3_THELT
Length = 400
Score = 95.5 bits (236), Expect = 2e-18
Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDSL-R 267
LAK PV +V+ +++ ++ SL+ P+G +E TV D V DE + ++ L R
Sbjct: 265 LAKLMDKPVDKVEEILQASKETVSLEAPVGEDE-DSTVGDFVADENITSPKKEAMRMLMR 323
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
++E +L L REA V+++R+GL DGK TLEE+G+ NVTRERIRQIE KALRKLR
Sbjct: 324 EELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLR 381
[248][TOP]
>UniRef100_C8R064 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT
Length = 555
Score = 95.5 bits (236), Expect = 2e-18
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVED-EREAADEEFGSDSLR 267
+A+ G+ + +V+ +++ A+ SLDTP+G E + D +ED + + DE DSL+
Sbjct: 424 MAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGE-DSFLSDFIEDADSTSPDEATIYDSLQ 482
Query: 268 NDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLRVK 447
+++ +L L RE V+RLRFG+D + TLEE+GE +VTRERIRQIEAKAL+KL+
Sbjct: 483 DNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLKHP 542
Query: 448 T 450
T
Sbjct: 543 T 543
[249][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 95.5 bits (236), Expect = 2e-18
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 109 LPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGS-DSLRNDMEAM 285
LP +V+ +++ A+ SL+TPIG E + D +ED+ + E + + L+ +E +
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIG-EEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDV 303
Query: 286 LLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L L +RE V+RLRFGLDDG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 304 LDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355
[250][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 95.5 bits (236), Expect = 2e-18
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 LAKAAGLPVTRVQMLMETARSAASLDTPIGGNELGPTVKDSVEDEREAADEEFGSDS--- 261
+A GL V RV+ +M+ ++ SL+TPIG E + D +EDE AA + + S
Sbjct: 252 IAHRMGLSVARVREIMKISQEPVSLETPIGEEE-DTRLSDFIEDE--AAPDPADAASMLL 308
Query: 262 LRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 441
L+ + +L L REA V+RLRFGL DG+ TLEE+G+ VTRERIRQIEAKALRKLR
Sbjct: 309 LKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKLR 368