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[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 343 bits (880), Expect = 7e-93
Identities = 177/180 (98%), Positives = 179/180 (99%), Gaps = 1/180 (0%)
Frame = +3
Query: 3 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE 182
AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE
Sbjct: 66 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE 125
Query: 183 QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE 362
QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE
Sbjct: 126 QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE 185
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVL-DPISVEEAL 539
DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVL DPI+VEEA+
Sbjct: 186 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAI 245
[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 212 bits (539), Expect = 2e-53
Identities = 104/138 (75%), Positives = 122/138 (88%)
Frame = +3
Query: 6 AGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQ 185
A TVRIIIQGRKLPVT+AIK YVEEKVAKA+ NF+HTLKEVDVTLSARGGDTGTHGKKEQ
Sbjct: 71 ASTVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQ 130
Query: 186 KVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKED 365
KV+VTI+TLRNGVVRVED E+NLYAAIDLVCDKIR+KL ++KEKAI++G WPG+AGPKE+
Sbjct: 131 KVDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGKWPGKAGPKEN 190
Query: 366 VDEEDFQEYLKEVKMDTQ 419
V+ + +++TQ
Sbjct: 191 VEGRRTSKSTSRCQVETQ 208
[3][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 114 bits (286), Expect = 5e-24
Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFS-HTLKEVDVTLSARGG-DTGTHGK 176
A+ + ++I+QGR L +TD+I+ Y EEK+ KAVA+F H ++EVDV S+RGG D T G
Sbjct: 76 ASASTKVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGG 135
Query: 177 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 356
QK EVT+YT RNG++R E+ ++LYA+ID V DK+ KL+K+KEK IS+ + P
Sbjct: 136 ALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAP 194
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQF 455
K D + + + + D +E ++ +F
Sbjct: 195 KAQTDAIVEEMQAADEALADESMDYDEVVREKF 227
[4][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 114 bits (285), Expect = 7e-24
Identities = 74/185 (40%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+IIQG+ +TDA+K Y+EEKV AV ++ ++EVDV LS RGG+ G G K ++
Sbjct: 87 SVRLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVG-KGPKIRRC 145
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GVVR E+ +YA+ID+V D IR KL+KIKEK G P +
Sbjct: 146 EVTLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRKIKEKD------GGHGRPSKMRK 199
Query: 372 EEDFQEYLKEVKMDTQ---------LFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPIS 524
+ E L V MD + L D EE + +L+ V+R+K + P+S
Sbjct: 200 QPKLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLS----DEVVRTKYFEMPPMS 255
Query: 525 VEEAL 539
EEAL
Sbjct: 256 PEEAL 260
[5][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 114 bits (284), Expect = 9e-24
Identities = 74/175 (42%), Positives = 107/175 (61%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
VR++IQG+ L +TDAIK YVEEKV AV N S +KEVDV +S RGG+TG G++ Q+ E
Sbjct: 88 VRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETG-RGERLQRCE 146
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT++T ++GVVR E+ ++YA+ID V D I KL+KIKEK G P + P+
Sbjct: 147 VTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGHGR-PAKYSPR----- 200
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ EV + ++ D + L+R+ +L P V+R+K + P+ EAL
Sbjct: 201 ------IGEV-LSNEVVDLDPILERKPDDL----PDEVVRTKYFEMRPMKPLEAL 244
[6][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 110 bits (275), Expect = 1e-22
Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
Frame = +3
Query: 3 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE 182
A VR++IQG+ L +TDAIK YVEEKV AV N S +KEVDV +S RGG+TG G K
Sbjct: 6 ALAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETG-RGGKL 64
Query: 183 QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE 362
Q+ EVT++T ++GVVR E+ ++YA+ID V D I KL+KIKEK G P +
Sbjct: 65 QRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKD------GGHGRPTK 118
Query: 363 DVDEEDFQEYLKE--VKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E L + V +D L K + L P ++R+K + P+ EA
Sbjct: 119 SRHSPRIGEVLSDEVVDLDPILGRKPDDL-----------PDEIVRTKYFEMRPMKPLEA 167
Query: 537 L 539
L
Sbjct: 168 L 168
[7][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 109 bits (272), Expect = 2e-22
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+I+QGR + ++D +K ++E+KV +AV+ H ++EVDV LSARGG+ G G K +
Sbjct: 71 SVRLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG-RGPKTSRC 129
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK--AISRGAWPGRAGPKED 365
E+T+++ R+GV+R E+ + YA+IDL I+ KL+KIKEK + R G G E+
Sbjct: 130 EITLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEKETEVRRDGDGGAGGAWEE 189
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ +D L + +E AE + A V+R+K + P++VEEAL
Sbjct: 190 ----------ELPLLDDDLVEADELAAAVGAEDEQTVVAKVVRTKVFEMPPLTVEEAL 237
[8][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 108 bits (270), Expect = 4e-22
Identities = 66/176 (37%), Positives = 105/176 (59%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I+QG+ L +T A+K YVEEK+ KAV SH +EVDV LS RGG+ G G K ++
Sbjct: 84 SVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELG-KGPKIRRC 142
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GV+R E+ ++Y +ID+V I+ KL+KIKEK RG + D
Sbjct: 143 EVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRD 202
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E V+ D + +EE+++ ++ + V+R K+ + P+SV EA+
Sbjct: 203 PEALL-----VQEDLETLSQEEEVEDDKSD---GFVTEVVRKKSFDMPPLSVNEAI 250
[9][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 107 bits (267), Expect = 8e-22
Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 7/189 (3%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+I+QGR + + + +K ++EEK +AVA S +KEVDV LSARGG+ + G K +
Sbjct: 80 SVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRC 138
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE--- 362
E+T++T R+GV+R E+ + YA+IDL I+ KL+KIKEK G P
Sbjct: 139 EITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWP 198
Query: 363 ----DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVE 530
D +++D Q LK+++ D++ L R V+R+K + P+S E
Sbjct: 199 PSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTR------------VVRTKVFEMPPLSGE 246
Query: 531 EALTRWGCG 557
EA+ + G G
Sbjct: 247 EAMEQLGNG 255
[10][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 106 bits (265), Expect = 1e-21
Identities = 65/176 (36%), Positives = 105/176 (59%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I+QG+ L +T A+K YVEEK+ KAV SH +EVDV LS RGG+ G G K ++
Sbjct: 56 SVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELG-KGPKIRRC 114
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GV+R E+ ++Y +ID+V I+ KL+KIKEK G + D
Sbjct: 115 EVTLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRD 174
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E + V+ D + +EE+++ + + + V+R K+ + P+SV EA+
Sbjct: 175 PE-----VLLVQEDLETLPQEEEVEDD--DKSDGFVTEVVRKKSFDMPPLSVNEAI 223
[11][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 106 bits (265), Expect = 1e-21
Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I QG+ L +TD +K +VE+KV KAV SH ++EVDV LS RGG+ G G K ++
Sbjct: 87 SVKLITQGKNLELTDTVKKHVEDKVGKAVQKHSHLVREVDVRLSVRGGEFG-KGPKIRRC 145
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKE 362
EVT++T ++GV+R E+ +YA+IDLV I+ KL+KIKEK G R +E
Sbjct: 146 EVTLFTKKHGVIRAEEDAETIYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVRE 205
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
V E VK DT +++ + + Y V+R+K + P++V EA+
Sbjct: 206 PVAE--------PVKDDT------DEVDGVLGDEDEDYIDEVVRTKYFDMPPLTVSEAI 250
[12][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 106 bits (264), Expect = 2e-21
Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 7/183 (3%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+I+QGR + + + +K ++EEK +AVA S +KEVDV LSARGG+ + G K +
Sbjct: 80 SVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRC 138
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE--- 362
E+T++T R+GV+R E+ + YA+IDL I+ KL+KIKEK G P
Sbjct: 139 EITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWP 198
Query: 363 ----DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVE 530
D +++D Q LK+++ D++ L + V+R+K + P+SVE
Sbjct: 199 PSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTK------------VVRTKVFEMPPLSVE 246
Query: 531 EAL 539
EA+
Sbjct: 247 EAM 249
[13][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 106 bits (264), Expect = 2e-21
Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I+QGR L V+D ++ +VE+KV K+VA SH ++EVDV LSARGGD + G K ++
Sbjct: 74 SVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDL-SKGPKLRRC 132
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T R+GV+R E+ +LY++IDLV I+ KL+KIK+K G + D
Sbjct: 133 EVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRD 192
Query: 372 EEDF----QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E +E L+EV+ E+ F E V+R+K + P+++ EA+
Sbjct: 193 PEPVRITREEVLEEVESAPAPVSVEDD---DFIE-------EVVRTKYFDMPPLTITEAV 242
[14][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 105 bits (261), Expect = 4e-21
Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 14/153 (9%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L +TD +K +VE+KV KAV SH ++EVDV LS RGG+ G G + ++
Sbjct: 85 SVKLIIQGKNLELTDTVKRHVEDKVGKAVQKHSHLVREVDVRLSVRGGELG-KGPRIRRC 143
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGR-------- 347
EVT++T R+GVVR E+ +YA+IDLV I+ KL+KIKEK G
Sbjct: 144 EVTLFTNRHGVVRAEEDAETIYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 203
Query: 348 ------AGPKEDVDEEDFQEYLKEVKMDTQLFD 428
G ++V +++ ++ ++EV + T+ FD
Sbjct: 204 PVPQVVEGDADEVSQQEVEDSIEEV-VRTKFFD 235
[15][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 104 bits (260), Expect = 5e-21
Identities = 65/176 (36%), Positives = 105/176 (59%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L +++ IK +VEEKV K+V SH ++EVDV LS RGG+ G G + ++
Sbjct: 138 SVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGGEFG-KGPRIRRC 196
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GVVR E+ +YA IDLV I+ KL+KIKEK G + + V
Sbjct: 197 EVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHM-KGFNRLKVR 255
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E + +++V+ T EE+ + + ++R+KT + P++V EA+
Sbjct: 256 EPVIEPVVEDVEDSTDSSVGEEEEEDDLIK-------EIVRTKTFEMPPLTVAEAV 304
[16][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TFU4_SOYBN
Length = 208
Score = 104 bits (260), Expect = 5e-21
Identities = 53/107 (49%), Positives = 74/107 (69%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L +TDA+K +VE+KV KAV SH ++EVDV LS RGG G + ++
Sbjct: 69 SVKLIIQGKNLELTDAVKRHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRC 128
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRG 332
EVT++T R+GVVR E+ + Y +IDLV I+ KL+KIKEK G
Sbjct: 129 EVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHG 175
[17][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 103 bits (258), Expect = 9e-21
Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 3/179 (1%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++ IQG+ L +TDA+K +VE+KV KAV SH ++EVDV LS RGG G + ++
Sbjct: 69 SVKLTIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRC 128
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP---GRAGPKE 362
EVT++T R+GVVR E+ + Y +IDLV I+ KL+KIKEK G R +E
Sbjct: 129 EVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVRE 188
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
V++ +E D L +EE+ V+R+K + P++V EA+
Sbjct: 189 PVEQLPVEE-------DEILSPQEEEESID----------EVVRTKYFDMPPLTVAEAI 230
[18][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 103 bits (256), Expect = 2e-20
Identities = 62/120 (51%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Frame = +3
Query: 3 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFS-HTLKEVDVTLSARGGDTGTHGKK 179
A GT ++I+QGR L +T+AI+ Y E+K+ KAV++F H ++EVDVT SAR G
Sbjct: 43 AKGT-KVIVQGRHLEITEAIRDYCEQKINKAVSHFDMHDVREVDVTCSARSEKQ--QGGD 99
Query: 180 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPK 359
Q +VT+YT RNGVVR E+ +NLYA+ID V DKI KL+KIKEK S+ A +A PK
Sbjct: 100 LQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIERKLRKIKEKKNSKKAGKTKANPK 158
[19][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 102 bits (255), Expect = 2e-20
Identities = 66/176 (37%), Positives = 103/176 (58%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I+QG+ L +TD ++ +VEEKV KAV SH ++EVDV LS RGG+ G G K ++
Sbjct: 77 SVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELG-KGPKIRRC 135
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GVVR E+ LY +ID+V I+ KL+KIKEK G
Sbjct: 136 EVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGR-----------H 184
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ F LK +T L ++E + Q + + I ++R+K + P++V EA+
Sbjct: 185 MKGFNR-LKVRDPETPLVEEEADVVPQKEDGDLI--NEIVRTKYFDMPPLTVPEAV 237
[20][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 102 bits (255), Expect = 2e-20
Identities = 66/176 (37%), Positives = 103/176 (58%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++I+QG+ L +TD ++ +VEEKV KAV SH ++EVDV LS RGG+ G G K ++
Sbjct: 9 SVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELG-KGPKIRRC 67
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T ++GVVR E+ LY +ID+V I+ KL+KIKEK G
Sbjct: 68 EVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGR-----------H 116
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ F LK +T L ++E + Q + + I ++R+K + P++V EA+
Sbjct: 117 MKGFNR-LKVRDPETPLVEEEADVVPQKEDGDLI--NEIVRTKYFDMPPLTVPEAV 169
[21][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 100 bits (249), Expect = 1e-19
Identities = 61/176 (34%), Positives = 102/176 (57%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 9 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 67
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T R+GVVR E+ ++A+IDLV I+ KL+KIK+K G + +
Sbjct: 68 EVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGR------HMKGFN 121
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E + +V ++ + +Q + E V+R+K + P++V EA+
Sbjct: 122 RLKVREPMHQVVVEDDADEVSQQEDEDYIE-------EVVRTKYFDMPPLTVSEAI 170
[22][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 100 bits (249), Expect = 1e-19
Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+I+Q R +++ +K ++E+KV +AV+ H ++EVDV LSARGG+ G G K +
Sbjct: 71 SVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG-RGPKTSRC 129
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV- 368
E+T++T R+GV+R E+ + YA+IDL ++ KL+KIKEK R G + V
Sbjct: 130 EITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETE----VRRGGDADGVW 185
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
DE + L + D D E + AE A V+R+K + P++VEEAL
Sbjct: 186 DEIPPADLLPPAEAD----DLEAAVG---AEDEETVLAKVVRTKVFEMPPLTVEEAL 235
[23][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 100 bits (249), Expect = 1e-19
Identities = 61/176 (34%), Positives = 102/176 (57%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 84 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 142
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++T R+GVVR E+ ++A+IDLV I+ KL+KIK+K G + +
Sbjct: 143 EVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGR------HMKGFN 196
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E + +V ++ + +Q + E V+R+K + P++V EA+
Sbjct: 197 RLKVREPMHQVVVEDDADEVSQQEDEDYIE-------EVVRTKYFDMPPLTVSEAI 245
[24][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJW3_9ROSI
Length = 268
Score = 98.6 bits (244), Expect = 4e-19
Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 14/145 (9%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 84 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 142
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW----------- 338
EVT++T R+GVVR E+ +YA+IDL I+ KL+KIK+K G
Sbjct: 143 EVTLFTKRHGVVRAEEDAETIYASIDLASSIIQRKLRKIKDKESDHGRHMKGFNRLKVRE 202
Query: 339 PGRAGPKEDVDE---EDFQEYLKEV 404
P ++D DE ++ ++Y++EV
Sbjct: 203 PMHQVVEDDADEVSQQEDEDYIEEV 227
[25][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10AC8_ORYSJ
Length = 241
Score = 97.1 bits (240), Expect = 1e-18
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 7/153 (4%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+VR+I+QGR + + + +K ++EEK +AVA S +KEVDV LSARGG+ + G K +
Sbjct: 80 SVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGEL-SRGPKICRC 138
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKE--- 362
E+T++T R+GV+R E+ + YA+IDL I+ KL+KIKEK G P
Sbjct: 139 EITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRKIKEKETDVRHLKGTKPPVSDWP 198
Query: 363 ----DVDEEDFQEYLKEVKMDTQLFDKEEQLQR 449
D +++D Q LK+++ D++ L +
Sbjct: 199 PSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTK 231
[26][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 89.7 bits (221), Expect = 2e-16
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG+ L +TDAI YV++K+AKAV++F EVDV LS Q E
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSVA---RNPRINPRQTAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTIY NG V+R +++ NLYA+IDLV DKI +L+K KEK +++ + G
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTG------ 109
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ ++ +D + D+ +L P V+R+K + P+S++EAL
Sbjct: 110 ----EVVAQKPIVDDLIGDRTVKL-----------PEEVVRTKYFAMPPMSIQEAL 150
[27][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 89.0 bits (219), Expect = 3e-16
Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
+++IQG+ + +TDAI+ YV+EK+ +AV++F+ EVDV LS Q EV
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVSHFAQITSEVDVNLSVA---RNPRISASQSAEV 59
Query: 198 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
T+Y NG V+R E++ NLYA+ID V DK+ KL+K KE+ G R PK V
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRKYKER---NGIHRVRHTPKTSVAV 114
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ T + E Q AEL PA V+R+K + P++V+EAL
Sbjct: 115 AQ--------QPVTDPLNTERQ-----AEL----PAEVVRTKYFAMPPMTVQEAL 152
[28][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 87.4 bits (215), Expect = 9e-16
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
+R++I G+ + +TD I+ Y+ +K+ +A ++F + + EVDV LS AR T +Q
Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTAP----KQTA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVT++ + V+R E++ NLYA+IDLV DKI KL+K+KEK ++D
Sbjct: 57 EVTVF-VNGSVIRAEESSENLYASIDLVADKIARKLRKLKEK-------------RQDKS 102
Query: 372 EEDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ E ++ T L D+ QL P V+R K + P++++EAL
Sbjct: 103 RAKDTNSVVEPEVVTDLVGDRTPQL-----------PEQVVRMKYFAMPPMTIQEAL 148
[29][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 87.4 bits (215), Expect = 9e-16
Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
+++IQG+ + +TDAI+ YV+EK+ +AV +F+ EVDV LS Q EV
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVKHFAQITSEVDVNLSVA---RNPRISANQSAEV 59
Query: 198 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
T+Y NG V+R E++ NLYA+ID V DK+ KL+K KE+ G R PK V
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRKYKER---NGVHRIRHSPKTSVAV 114
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
Q+ L T + E Q AEL P V+R+K + P++V+EAL
Sbjct: 115 A--QQPL------TDPLNTERQ-----AEL----PPEVVRTKYFAMPPMTVQEAL 152
[30][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 87.0 bits (214), Expect = 1e-15
Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT+AI YV++K+ KAV +F +VDV LS + + K E
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQQKLEKAVKHFQTLTTKVDVHLSVA---KNARIQNKHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDV 368
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + + A P +AG E V
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERKLEQNAHSPVKAG--EVV 113
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E +E L + D++ +L P V+R K + P+S++EAL
Sbjct: 114 QQETIEENL--------IGDRQPEL-----------PPEVVRMKYFGMPPMSIDEAL 151
[31][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 85.9 bits (211), Expect = 3e-15
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT+AI YVEEKV +AV +F + +VDV LS T+ + K E
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSVARNARITN---KHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + G E V+
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERI--QDKQHGNVKTSEIVE 113
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ +E L + D+ +L P+ V+R K + P+++E+AL
Sbjct: 114 DKPVEENL--------IGDRAPEL-----------PSEVLRMKYFAMPPMAIEDAL 150
[32][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 85.5 bits (210), Expect = 3e-15
Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 2/179 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT+AI YVE+K+ KAV +F+ +VDV LS + K E
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ +
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH----------RTHS 105
Query: 372 EEDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
E ++E +D L D+ +L PA V+R K + P+++EEALT+
Sbjct: 106 TVKTSEVVQEKPLDDNLIGDRTPEL-----------PAEVVRMKYFAMPPMTIEEALTQ 153
[33][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 84.7 bits (208), Expect = 6e-15
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I G+ + +TDAI+ YV++K+ KA +F + E+DV LS +Q E
Sbjct: 1 MKLVIHGKNIEITDAIRDYVQQKIEKAANHFQNLTTEIDVHLSVA---RNPRINPKQTAE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTIYT V+R E++ NLYA+IDLV DKI +L+K KE+ ++D
Sbjct: 58 VTIYT-NGSVIRAEESSENLYASIDLVSDKIARQLRKFKER-------------RQDKHS 103
Query: 375 EDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E + V + T L D+ +L P V+R+K + P+++ EAL
Sbjct: 104 RSKEEPVVSVPLVTDLTGDRTPEL-----------PEEVVRTKYFAMPPMTLREAL 148
[34][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 84.0 bits (206), Expect = 1e-14
Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG+ + +TD+I YV +K+ KAV +F EVDV LS +Q E
Sbjct: 1 MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVA---RNPRINPKQTAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTIY NG V+R +++ NLYA+IDLV DKI +L+K KEK S + + VD
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRQS------KVNKTKTVD 109
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ Q ++ + D Q AEL P+ V+R+K + ++VEEAL
Sbjct: 110 LIESQPVVENLIGDRQ------------AEL----PSEVVRTKYFPMPSMTVEEAL 149
[35][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 83.6 bits (205), Expect = 1e-14
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++I G+ + +TDAI+ YV +K+ KAV +F + EVDV LS AR T Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINT----RQAA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVTIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKISRQLRKYKERK----------------- 98
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
Q+ + + T+ E + + P V+R+K + P++V EAL
Sbjct: 99 ----QDQKTQAQPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEAL 150
[36][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 82.8 bits (203), Expect = 2e-14
Identities = 57/175 (32%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG+ + +TDAI+ +V +K+ KA A+F + +VDV LS + +Q E
Sbjct: 1 MKLVIQGKNIEITDAIRSHVHQKIEKATAHFQTLINKVDVCLSVQ---NNPRIAPKQTAE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT++ L N VVR E++ +LYA+ID+V DK+ +L+K KEK R V
Sbjct: 58 VTVF-LNNVVVRAEESSESLYASIDMVTDKLTRQLRKYKEKR--------RDQDHATVRP 108
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
D + + + D E L Q P V+RSK + P++V+ AL
Sbjct: 109 TDVDATINAPDITSHNADISEVLNHQ-----PKLPDTVVRSKYFAMPPMTVQTAL 158
[37][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 82.8 bits (203), Expect = 2e-14
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT++I YVE K+ KA +F +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARITD---KHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK G K V
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEK---------NFGKKTHVQ 106
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E+ + ++ D + D+ +L P+ V+R K + P++++EAL
Sbjct: 107 EKTSEVLPEDPVPDNLIGDRAPEL-----------PSEVVRMKYFAMPPMTIDEAL 151
[38][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 82.4 bits (202), Expect = 3e-14
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++I G+ + +TDAI+ YV +K+ KAV +F + EVDV LS AR T Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINT----RQAA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVTIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKISRQLRKYKERK----------------- 98
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
Q+ + T+ E + + P V+R+K + P++V EAL
Sbjct: 99 ----QDQKTQALPTTETIVPETVVADLIGDRTPELPEEVVRTKYFSMPPMTVTEAL 150
[39][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 82.4 bits (202), Expect = 3e-14
Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT+ I YVE+K+ KAV +F+ +VDV LS + + E
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHRAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS-RGAWPGRAGPKEDV 368
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KE+ + R P +
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTNAPVKT------ 109
Query: 369 DEEDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
E ++E +D L D+ +L PA V+R K + P+++EEALT+
Sbjct: 110 -----SEVVQEKPLDGSLIGDRTPEL-----------PAEVVRMKYFAMPPMTIEEALTQ 153
[40][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 82.4 bits (202), Expect = 3e-14
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++++QG+ L +T+AI YV +K+ KAV+++ EVDV LS +Q E
Sbjct: 1 MKLVVQGKNLEITEAIHEYVHQKITKAVSHYQQLTNEVDVHLSIA---RNPRINPKQTAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTIY NG V+R +++ NLYA+IDLV DKI +L+K K+K + P + E V+
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRKFKDKRQGKHLHPPKLA--EVVE 113
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ E L + D++ +L P V+R+K + P+++++AL
Sbjct: 114 NQPVIEDL--------IGDRQPEL-----------PPEVVRTKYFAMPPMNLQDAL 150
[41][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 82.0 bits (201), Expect = 4e-14
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 3/180 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE--QK 188
+++++QG + VT AI YV++K+ KAV+++ L E+DV LS H K Q
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSV-----AKHAKSNPRQT 55
Query: 189 VEVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKED 365
EVTIY NG V+R E+ NLYA+IDLV DKI +L+K KEK R G+ E
Sbjct: 56 AEVTIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKKYKEKLRDR---KGQLSTAET 110
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
D+ L + + T L + + EL P +++R+K + ++VE+AL +
Sbjct: 111 ADQ------LSDGALVTDLLNGRQ------PEL----PQDIVRTKYFAMPAMTVEDALAQ 154
[42][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 82.0 bits (201), Expect = 4e-14
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++IQG+ + +TD+I+ YV +K+ KAV +F + EVDV LS AR T +Q
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQNMTTEVDVHLSVARNPRINT----KQTA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVTIY + V+R +++ +LYA+IDLV DKI+ +L+K KEK + + G +
Sbjct: 57 EVTIYANKT-VIRAQESSEDLYASIDLVADKIQRQLRKYKEKQQKKTQTQPKTGAV--IH 113
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E E L + D+ +L P V+R K + P+++EEA
Sbjct: 114 EAPVVEDL--------IGDRTPEL-----------PTEVVRMKYFAMPPMTIEEA 149
[43][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 82.0 bits (201), Expect = 4e-14
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++IQG + VT+AI YV+EK+ KAV +F +VDV LS A+ G + + K
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQEKLEKAVKHFQAITTKVDVHLSVAKNGRV----QNKHKA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAW-PGRAGPKEDV 368
EVT+Y V+R ++ NLYA+IDLV DKI +L+K KE+ + + A+ P + G DV
Sbjct: 57 EVTVYA-NGAVIRAQEGSENLYASIDLVSDKIARQLRKYKERRLEQKAYSPVKTG---DV 112
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ E + D++ +L P V+R K + +S+EEAL
Sbjct: 113 VQDQPVE-------GNLIGDRQPEL-----------PPEVVRMKYFAMPLMSIEEAL 151
[44][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 81.3 bits (199), Expect = 6e-14
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 4/179 (2%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I G+ + +TDAI+ YV +K+ KA ++ + E+DV LS T +Q E
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSVARNPRIT---TKQTAE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT++ + V+R E++ NLYA+IDLV DKI +L+K KEK ++G P + +
Sbjct: 58 VTLF-VNGSVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKG--PNKGSNRS---- 110
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNR----IYPANVMRSKTVVLDPISVEEAL 539
K V + T + Q +L R P V+R K + P+SV +AL
Sbjct: 111 -------KAVALQT------PEEQPLIGDLTRDRAPELPEEVVRCKYFAISPMSVHDAL 156
[45][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 80.5 bits (197), Expect = 1e-13
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 3/180 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKK--EQK 188
+++++QG + VT AI YV++K+ KAV+++ L E+DV LS H K Q
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLS-----VAKHAKSNPRQT 55
Query: 189 VEVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKED 365
EVTIY NG V+R E+ NLYA+IDLV DKI +L+K KE+ R G+ E
Sbjct: 56 AEVTIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKKYKEELRDR---KGQLSTAET 110
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
D+ L + + T L + + EL P +++R+K + ++VE+AL +
Sbjct: 111 ADQ------LSDGALVTDLLNGRQ------PEL----PQDIVRTKYFAMPAMTVEDALAQ 154
[46][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 80.5 bits (197), Expect = 1e-13
Identities = 43/101 (42%), Positives = 65/101 (64%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I G+ + +TDAI+ YV +K+ KAV++F + EVDV LS T +Q E
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSVARNPRIT---TKQAAE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI+ V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 58 VTIFA-NGSVIRAEESSENLYASIDLVADKIARQLRKYKER 97
[47][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 79.7 bits (195), Expect = 2e-13
Identities = 44/101 (43%), Positives = 67/101 (66%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+K+ +TD IK VE+K++K + + H EV VT+SAR K +QK+E
Sbjct: 7 MKILITGKKIELTDGIKGAVEDKLSK-LDRYLHEDTEVKVTVSAR--------KAKQKIE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI + ++R ED+E NLYAAID+V DK+ +L++ K K
Sbjct: 58 VTIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRRYKNK 98
[48][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 79.3 bits (194), Expect = 2e-13
Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 2/177 (1%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+++++IQG + VT++I YV +K+ KAV ++ +VDV LS T+ + K
Sbjct: 2 SMKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSVAKNARITN---KHKA 58
Query: 192 EVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 368
EVT+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK P+ V
Sbjct: 59 EVTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKI-------NNHKPQSSV 109
Query: 369 DEEDFQEYLKEVKMDTQLF-DKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E L E +++ L D+E L P V+R K + P+S+EEA
Sbjct: 110 KN---PEVLPEREIEKDLIGDREAAL-----------PPEVIRMKYFAMPPMSIEEA 152
[49][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 79.0 bits (193), Expect = 3e-13
Identities = 56/175 (32%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T+ ++R ED + NLY AID+V DK+ +L+K K++ D+
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRL---------------QDK 96
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ ++ + L D++E + EL + R K + P+S EEA+
Sbjct: 97 HKDNKSIRFQDAEINLADEQEDYGDENQEL------VIQRRKKFSVKPMSEEEAV 145
[50][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 79.0 bits (193), Expect = 3e-13
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT++I YV +K+ KAV ++ +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTFTTKVDVHLSVAKNARITD---KHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK + P + DV
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNHK--PQSSVKSPDVL 113
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E EVK D + D+E +L P V+R K + P+S+EEA
Sbjct: 114 PE------TEVKEDL-IGDREVEL-----------PPEVIRMKYFAMPPMSIEEA 150
[51][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 78.6 bits (192), Expect = 4e-13
Identities = 56/175 (32%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T+ ++R ED + NLY AID+V DK+ +L+K K++ D+
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRL---------------QDK 96
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ ++ + L D++E + EL + R K + P+S EEA+
Sbjct: 97 HKDNKSIRFQDSEINLADEQEDYGDENQEL------VIQRRKKFSVKPMSEEEAV 145
[52][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 78.6 bits (192), Expect = 4e-13
Identities = 56/175 (32%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T+ ++R ED + NLY AID+V DK+ +L+K K++ D+
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRL---------------QDK 96
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ ++ + L D++E + EL + R K + P+S EEA+
Sbjct: 97 HKDNKSIRFQDAEINLADEQEDYGDENQEL------VIQRRKKFSVKPMSEEEAV 145
[53][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 78.6 bits (192), Expect = 4e-13
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++I G+ + +TDAI+ YV +K+ +AV +F EV+V LS AR T +Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIERAVNHFQSITNEVNVHLSVARNPRIST----KQAA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVTIY V+R E++ NLYA+IDLV DKI +L+K KE+ P
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTN------ 109
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ + E D+ + D+ +L P V+R+K + P+++ EA
Sbjct: 110 ----EAVVAEPVADSLIGDRTPEL-----------PGEVVRTKYFPMPPMTLAEA 149
[54][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 77.8 bits (190), Expect = 7e-13
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 191
++++I + + +TDAI+ YV +K+ KA ++F EVDV LS AR T Q
Sbjct: 1 MKLVIHSKNIEITDAIREYVHQKIEKAASHFQSITNEVDVHLSVARNPRINT----RQAA 56
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
EVTIY V+R E++ NLYA+IDLV DKI +L+K KE+
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKIARQLRKYKER------------------ 97
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ K T++ E + + P V+R+K + P+++ EAL
Sbjct: 98 ----RQDQKTQSQPTEVVVAESVVPDLIGDRTPELPNEVVRTKYFSMPPMTLAEAL 149
[55][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 77.8 bits (190), Expect = 7e-13
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
Frame = +3
Query: 12 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 191
+++++IQG + VT++I YV+EK+ KAV +F +VDV LS T+ + K
Sbjct: 7 SMKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSVARNARITN---KHKA 63
Query: 192 EVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 368
EVT+Y NG V+R ++ +LYA+IDLV DKI +L+K KEK ++ A
Sbjct: 64 EVTVYA--NGTVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNNKKA----------- 110
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+K ++ T + + + + EL PA V+R K + P++++EAL
Sbjct: 111 -----PNPVKVGEVTTATAIEGDLIGDRTPEL----PAEVIRMKYFAMPPMTIDEAL 158
[56][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 77.0 bits (188), Expect = 1e-12
Identities = 58/175 (33%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R+ + G+ + +TD IK Y E+K+ K + + EV VT+SA GK QKVE
Sbjct: 9 MRVTVTGKHVKLTDGIKGYTEDKLKK-LGKYLDEDTEVKVTVSA--------GKNRQKVE 59
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
V I + +RVE+ ++NLY AIDLVCDK+ ++ K K+K +R PG + + E
Sbjct: 60 VMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQIIKYKDKFKTR--VPGNFSIRYEGIE 117
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E QE +D ++ + E ++R+ K L P+S+EEA+
Sbjct: 118 ELAQE------LDYEVEEPEVVIERR---------------KKFNLKPMSIEEAI 151
[57][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 76.6 bits (187), Expect = 2e-12
Identities = 42/101 (41%), Positives = 65/101 (64%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI + ++R ED E++LYAAID+VCDK+ ++ K K K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTK 92
[58][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 76.6 bits (187), Expect = 2e-12
Identities = 42/101 (41%), Positives = 65/101 (64%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI + ++R ED E++LYAAID+VCDK+ ++ K K K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTK 92
[59][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 76.6 bits (187), Expect = 2e-12
Identities = 42/101 (41%), Positives = 65/101 (64%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI + ++R ED E++LYAAID+VCDK+ ++ K K K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTK 92
[60][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
Length = 127
Score = 76.6 bits (187), Expect = 2e-12
Identities = 41/93 (44%), Positives = 59/93 (63%)
Frame = +3
Query: 42 LPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG 221
+ +TD +K +VE+KV KAV FSH ++EVD LS RGG+ G + I R+G
Sbjct: 1 MQLTDTVKEHVEDKVGKAVQKFSHLVREVDARLSVRGGELGKGPR--------IRKCRHG 52
Query: 222 VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKA 320
VVR E+ +YA IDLV I++KL+K+KE++
Sbjct: 53 VVRAEEDSETIYATIDLVLSIIQSKLRKMKEES 85
[61][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 76.3 bits (186), Expect = 2e-12
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++IQG + VT++I YV++K+ KAV ++ +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIDVTESINDYVKQKLEKAVKHYQTFTTKVDVHLSVAKNARITD---KHKAE 57
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K KEK +S A E +
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKISRQLRKYKEK-VSNHKPQSSAKLPEVLP 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E++ E L + D++ +L P V+R K + +S+EEA
Sbjct: 115 EKEVSEDL--------IGDRQAEL-----------PPEVIRMKYFAMPSMSIEEA 150
[62][TOP]
>UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
tauri RepID=Q00W70_OSTTA
Length = 184
Score = 76.3 bits (186), Expect = 2e-12
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANF-SHTLKEVDVTLSARGGDTGTHGKKEQKV 191
V++++QG L +T AI YV K+ +A ++ S ++EVDV SARGG+ G+ G E K
Sbjct: 50 VKMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGGE-GSKGGVEHKT 108
Query: 192 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGR--AGPK-- 359
EVT+ R + + NLYA ID D + ++K KEK +GA A PK
Sbjct: 109 EVTVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKHGGKGARHAAHDASPKEA 168
Query: 360 ----EDVDEED 380
EDVD +D
Sbjct: 169 LLDAEDVDGDD 179
[63][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 75.5 bits (184), Expect = 3e-12
Identities = 55/175 (31%), Positives = 91/175 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT A++ Y E K+++AV++F+ ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT++ V+R ++ NLYA+IDLV K+ +LQ+ K++ G
Sbjct: 57 VTLFA-SGTVIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHG------------HH 103
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
D Q + + + + + LQ + AEL PA V+R K + P+SVEEA+
Sbjct: 104 SDLQAEPEVMPL------QGDMLQGRHAEL----PAPVVRRKYFAMPPMSVEEAI 148
[64][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 74.3 bits (181), Expect = 8e-12
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ +A+ +F +KE DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV K+ +L++ KE+ PG
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E + E +D L D +E A L P+ +R K + P+SVE+A
Sbjct: 115 E----AVIDEAPIDGSLLDGKE------AHL----PSPGVRRKYFAMPPMSVEQA 155
[65][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 74.3 bits (181), Expect = 8e-12
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ +A+ +F +KE DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV K+ +L++ KE+ PG
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E + E +D L D +E A L P+ +R K + P+SVE+A
Sbjct: 115 E----AVIDEAPIDGSLLDGKE------AHL----PSPGVRRKYFAMPPMSVEQA 155
[66][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 70.5 bits (171), Expect(2) = 4e-11
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
Frame = +3
Query: 21 IIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV-EV 197
I I GRK+ V+DA++ +V+ KV A+ F T DV L H ++K EV
Sbjct: 4 IKISGRKVSVSDALRDHVQHKVGDALKVFDITPMSCDVVLRV----DKNHSNPDRKTCEV 59
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
T+Y +RN VVRVE + ++YAAID DK+ +L+K K + I R R+ +
Sbjct: 60 TVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDR---KQRSQAPAPAPSK 115
Query: 378 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
D + + EV D L +R K + L P++ EEAL +
Sbjct: 116 DLSDLIDEVADDDML----------------------VREKYIDLHPMTEEEALVQ 149
Score = 21.6 bits (44), Expect(2) = 4e-11
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 553 VGHSFYVCGNDTT 591
+GH FYV N TT
Sbjct: 153 IGHDFYVFENATT 165
[67][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 70.9 bits (172), Expect = 8e-11
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAG-PK 359
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE K I + + P
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNNQFKNKESFPS 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRI 473
E+ + E L + ++ L E ++ ++ E+N I
Sbjct: 115 ENTESRFLDEALLKDGIEASL--PEPSIKNKYFEMNPI 150
[68][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 70.9 bits (172), Expect = 8e-11
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT AI+ Y E K+ +A+ +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTPAIREYTETKLTRAITHFEGMVKEADVHLSVARNPR----VPQQIAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ +NLYA+IDLV K+ +L + KE+ R P + D
Sbjct: 57 VTMFA--NGTVIRAQEHSDNLYASIDLVASKLTRQLNRYKERVHERHQGPVHRSAR---D 111
Query: 372 EEDFQEYLKEVKMDTQLFD-KEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
EE L + L D KE +L P+ +R K + P+S++EAL
Sbjct: 112 EEAGAASLP--PPGSSLTDGKEPEL-----------PSRGVRRKYFAMPPMSLDEAL 155
[69][TOP]
>UniRef100_B7AN97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus
ATCC 43243 RepID=B7AN97_9BACE
Length = 179
Score = 70.1 bits (170), Expect(2) = 9e-11
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R +I GR + VTD +K VEEK+ K + F EV VTLS K+ QK+E
Sbjct: 4 MRFVIVGRNIEVTDGLKEAVEEKLGK-LDRFFAPDTEVKVTLSVE--------KERQKIE 54
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR----GAWPGRAGPKE 362
VTI ++ ++R E N++Y +IDLV + I +L+K K K I + A+ KE
Sbjct: 55 VTI-PVKGSIIRSEQVSNDMYVSIDLVEEVIERQLKKYKNKLIDKQQDAAAFAQEYIDKE 113
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEE 437
VD++ + ++ + D + D EE
Sbjct: 114 YVDDDADVKIIRTKRFDVKPMDPEE 138
Score = 20.8 bits (42), Expect(2) = 9e-11
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 553 VGHSFYVCGNDTTRR 597
+GHSFYV N T +
Sbjct: 146 LGHSFYVFFNSETEQ 160
[70][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 70.5 bits (171), Expect = 1e-10
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT A++ Y E K+ +A+ NF +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV K+ +L++ K++ G +
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRRFKDRHSDHHHSHGHRASETPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E + E +++ L KE QL P+ +R K + P+++E+A
Sbjct: 115 ESVLDD---EAIVESLLDGKEVQL-----------PSPGVRRKYFSMPPMTLEQA 155
[71][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T +K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGPLKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAGPKE 362
VTI+ NG ++R E+ NLY++IDLV +K+ KL+K KE K + +
Sbjct: 57 VTIFA--NGTIIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHNKKLHNNLVKNKNSYSN 114
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
++E D +D +F++E +++ P ++ K + PIS+EEA
Sbjct: 115 AIEESD--------SIDKDIFNEEREVR---------LPEPSIKKKYFEMIPISLEEA 155
[72][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT A++ Y E K+ +A+ NF +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV K+ +L++ K++ G +
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRRYKDRHSDHHHSHGHKASETPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E E +++ L KE QL P+ +R K + P+++E+A
Sbjct: 115 EAVLD---NEAVVESLLDGKEVQL-----------PSPGVRRKYFAMPPMTLEQA 155
[73][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT AI+ Y E K+ +A+ ++ +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPAIRDYTEAKLGRAINHYEGLVKEADVHLSVARNPRVA----QQTAE 56
Query: 195 VTIYTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NGVV R ++ NLYA+ID+V K+ +L++ K++ + AG +V
Sbjct: 57 VTVFA--NGVVIRAQERSENLYASIDMVAGKLSRQLRRYKDRLSNHHG----AGSPANVG 110
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ Q L+ V + + D+E L P +R K + +S+++AL
Sbjct: 111 DDTEQPSLEGVLPNDLIGDREPAL-----------PVPAVRRKYFSMPAMSLDQAL 155
[74][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 69.7 bits (169), Expect = 2e-10
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T +++ Y + K+ KA NF ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTQSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV +K+ +L+K KE+ S ++ + V
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHHNQS--TKSVQ 112
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
ED Q + T+ KE L P+ +R K + P+++E+A
Sbjct: 113 NEDTQNFSSSDHSLTE--GKEPHL-----------PSPGVRRKYFEMTPMNIEQA 154
[75][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 68.9 bits (167), Expect = 3e-10
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ KA+ +F +KE DV LS +Q E
Sbjct: 1 MKVLIHGRNLELTPALREYTKSKLEKAIHHFGDMVKEADVHLSVAKNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV +K+ +L++ KE+ PG
Sbjct: 57 VTVFA--NGTVIRAQERSQNLYASIDLVSNKLCRQLRRYKERHSDHHHSPGHRASITPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E E L++ ++ L + +E A+L P +R K + P+++E+A
Sbjct: 115 E----EVLEDKSINGSLVEGKE------AKL----PKPGIRRKYFPMHPMNIEQA 155
[76][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 68.9 bits (167), Expect = 3e-10
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y + K+ KA ++ +KE D+ LS + + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSL----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE+ ++
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNY----------IN 104
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ E D+ + DK Q + A L P +++K ++PIS EEA
Sbjct: 105 QFKNNESFPIESADSNVLDKTLFKQGREASL----PEPSIKNKYFEMNPISSEEA 155
[77][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 68.6 bits (166), Expect = 4e-10
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 3/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE+ + +
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKER------------NNKTIH 102
Query: 372 EEDF--QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ F ++ L M++ DK ++ A L P +++K + PIS +EA
Sbjct: 103 NKQFKNKDSLPIESMESNFLDKAFFIEGTEASL----PKPSIKNKYFEMTPISSDEA 155
[78][TOP]
>UniRef100_C6JQA9 Ribosome-associated protein Y n=1 Tax=Fusobacterium varium ATCC
27725 RepID=C6JQA9_FUSVA
Length = 183
Score = 68.6 bits (166), Expect = 4e-10
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I G++L VTDAIK Y E K+ + V + ++ E+DV+LSA TG+ E
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGR-VEKYHDSIIELDVSLSAVRTKTGS----SHTAE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK-AISRGAWPG----RAGPK 359
V Y L ++ + +LYAAID V D I A+L+K KEK AI+ G PG + P+
Sbjct: 56 VLAY-LSGSTLKASCTDTDLYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIKYNPE 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIY 476
+ E++ + +V + + D EE + Q LNR++
Sbjct: 115 TNTVEKEAAVNVVKVYLPPKPMDIEEAI-LQLELLNRVF 152
[79][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 68.2 bits (165), Expect = 5e-10
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT A++ Y E K+ +A+ +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRG 332
VT++ NG V+R ++ NLYA+IDLV K+ +L++ KE+ G
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRRFKERHSDHG 101
[80][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 68.2 bits (165), Expect = 5e-10
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE+ +
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKER------------NNKIFH 102
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
F+ + DT+ +E L + E + P +++K ++PIS EEA
Sbjct: 103 NNQFKNKESFLIADTESRFLDEALLKDGIEAS--LPEPSIKNKYFEMNPISSEEA 155
[81][TOP]
>UniRef100_Q5HHR8 Uncharacterized protein SACOL0815 n=1 Tax=Staphylococcus aureus
subsp. aureus COL RepID=Y815_STAAC
Length = 190
Score = 68.2 bits (165), Expect = 5e-10
Identities = 53/175 (30%), Positives = 87/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R R ++V
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INR---KSRDRGDQEVFV 110
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ QE ++E ++D +D E ++RSK L P+ EEA+
Sbjct: 111 AELQE-MQETQVDNDAYDDNE--------------IEIIRSKEFSLKPMDSEEAV 150
[82][TOP]
>UniRef100_Q2YSH7 Uncharacterized protein SAB0704 n=35 Tax=Staphylococcus aureus
RepID=Y704_STAAB
Length = 190
Score = 68.2 bits (165), Expect = 5e-10
Identities = 53/175 (30%), Positives = 87/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L+N +R E+ ++LYA IDL+ +K+ +++K K + I+R R ++V
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTR-INR---KSRDRGDQEVFV 110
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ QE ++E ++D +D E ++RSK L P+ EEA+
Sbjct: 111 AELQE-MQETQVDNDAYDDNE--------------IEIIRSKEFSLKPMDSEEAV 150
[83][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 67.8 bits (164), Expect = 7e-10
Identities = 52/171 (30%), Positives = 90/171 (52%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G L VTDA+K YVE+K+ K F+ + ++ + + ++QKVEVTI
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNN------EKQKVEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
+ N ++R ED ++YAAIDLV DK+ +++K K K R G +D ++
Sbjct: 58 PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKI-------NRRGRAKDGGIGEYF 110
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ L+ + + +++++E AEL ++R+K L P+ EEA+
Sbjct: 111 KTLEGPEAEAPVYEEDE------AEL------ELVRTKRFTLKPMDTEEAI 149
[84][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 67.8 bits (164), Expect = 7e-10
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI ++G+ + VT A++ YVE+++AK ++ F H V V LS K +VE
Sbjct: 1 MRIYVRGKNIEVTPALRGYVEKRLAK-LSKFEHHFGSVQVALSVE--------KDSHRVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-PKEDVD 371
VT+ + ++R E+ ++YA+IDLV +K+ +L++ K K ++R PG G +E
Sbjct: 52 VTV-PIDGMILRGEEVTGDMYASIDLVVEKLEKQLERYKGKLLNRR--PGAGGVTREQET 108
Query: 372 EEDFQEY 392
+ED +EY
Sbjct: 109 QEDEEEY 115
[85][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 67.8 bits (164), Expect = 7e-10
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T +++ Y + K+ KA NF ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV +K+ +L+K KE+ S ++ + V
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHNNQS--TKSVQ 112
Query: 372 EEDFQEYLKEVKMDTQLFD-KEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E + + D L + KE L P +R K +DP+++E+A
Sbjct: 113 NEKIENFSSS---DHSLIEGKEPHL-----------PNPGVRRKYFEMDPMTIEQA 154
[86][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 67.8 bits (164), Expect = 7e-10
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L VT A++ Y E K+ +AV ++ + E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTAALREYTESKLERAVQHYDEMVVEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV +K+ +L++ KE+ G
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLSRQLRRYKERHSDHHHSHGHRASTTPTT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E L + +D L D +E A L P +R K + P+SVEEA
Sbjct: 115 E----AVLDDSAVDGSLLDGKE------AHL----PDPGVRRKYFPMPPMSVEEA 155
[87][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 67.4 bits (163), Expect = 9e-10
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKE---KAISRGAWPGRAG-PK 359
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE K + + P
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKIFHNNQFKNKESFPI 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRI 473
D + E L + ++ L E ++ ++ E+N I
Sbjct: 115 ADTESRFLDEALLKDGIEASL--PEPSIKNKYFEMNPI 150
[88][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE+
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKER 96
[89][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K KE+
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKER 96
[90][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 67.0 bits (162), Expect = 1e-09
Identities = 54/177 (30%), Positives = 88/177 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
V I I GRK+ +++A++ +V++K+ A+ F T DV L D + E
Sbjct: 2 VDIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRV---DKNPSNPDRKTTE 58
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT++ +RN VVRV + +++YAAID DK+ +L+K K K + R R K +
Sbjct: 59 VTVF-VRNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVER-----RHHMKSERGI 112
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
QE L + ++ D ++QL +R K V L+P++ EEAL +
Sbjct: 113 ALTQEDLANL-IEIPAEDLDDQL---------------VREKYVDLEPMTEEEALVQ 153
[91][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 66.6 bits (161), Expect = 2e-09
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ +AV +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTPALRDYTQSKLERAVQHFDDMVKEADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI----SRGAWPGRAGPK 359
VT++ NG V+R ++ NLYA+IDLV K+ +L++ KE+ S G P
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRRFKERHSDHHHSNGHRASETPPT 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFD-KEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ + + +D L D KE QL P +R K + P+S+EEA
Sbjct: 115 DAIAD--------AAPIDGSLLDGKEVQL-----------PDPGVRRKYFAMPPMSLEEA 155
[92][TOP]
>UniRef100_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
RepID=Q0B0B5_SYNWW
Length = 181
Score = 66.2 bits (160), Expect = 2e-09
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ II+GR + +TDA+K Y ++++K + + +KE V LS G D KVE
Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSK-LEKYIDDVKEAQVALSIEGED--------HKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI--SRGAWPGRAGPKEDV 368
VTI L ++R E+ +++Y++ID+V +K+ +++K K + +RG AG K+ +
Sbjct: 52 VTI-PLNGIILRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRG-----AGLKKAL 105
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
EE +E DK E++++ V+RSK L P+ VEEA+
Sbjct: 106 AEEIKKE-----------LDKGEKIEK----------FKVVRSKRFALKPMDVEEAI 141
[93][TOP]
>UniRef100_A2BV60 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=A2BV60_PROM5
Length = 194
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/101 (35%), Positives = 60/101 (59%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I+I G+ + +T A+K Y E K+ KA ++ +KE D+ LS ++ Q E
Sbjct: 1 MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSY----QTAE 56
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI+ ++R E+ NLY++IDLV +K+ KL+K KE+
Sbjct: 57 VTIFA-SGTIIRAEEKTENLYSSIDLVSNKLCRKLRKYKER 96
[94][TOP]
>UniRef100_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4SAX9_OSTLU
Length = 132
Score = 65.9 bits (159), Expect = 3e-09
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +3
Query: 21 IIIQGRKLPVTDAIKLYVEEKVAKAVANFS-HTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
+++QG L +T AI Y K+ KA ++ ++EVDV SARGG+ + G E K EV
Sbjct: 1 MLVQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGED-SRGGHEHKTEV 59
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGA 335
T+ R + + NLYA ID D + ++K KEK +G+
Sbjct: 60 TVLMTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSGKGS 105
[95][TOP]
>UniRef100_UPI00004C2450 COG1544: Ribosome-associated protein Y (PSrp-1) n=1
Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2450
Length = 182
Score = 65.5 bits (158), Expect = 4e-09
Identities = 51/174 (29%), Positives = 86/174 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K F+ +E+D ++ + + ++ KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E + ++ T F+ E E++ I V+R+K V L P+ VEEA
Sbjct: 100 --HREKVPTGQVFTTEFEAE--------EVDEIPEVQVVRTKNVTLKPMDVEEA 143
[96][TOP]
>UniRef100_Q5XAQ7 Ribosome-associated factor Y n=10 Tax=Streptococcus pyogenes
RepID=RAFY_STRP6
Length = 182
Score = 65.5 bits (158), Expect = 4e-09
Identities = 51/174 (29%), Positives = 86/174 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K F+ +E+D ++ + + ++ KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E + ++ T F+ E E++ I V+R+K V L P+ VEEA
Sbjct: 100 --HREKVPTGQVFTTEFEAE--------EVDEIPEVQVVRTKNVTLKPMDVEEA 143
[97][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 65.1 bits (157), Expect = 5e-09
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDLV K+ +L+K KE+ G +
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLTPST 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
EE E + E + + KE QL P +R K + P+++++A
Sbjct: 115 EEVSDESVVEGSL---VDGKEAQL-----------PEPGVRRKYFSMPPMTLDDA 155
[98][TOP]
>UniRef100_Q2B1U0 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. NRRL
B-14911 RepID=Q2B1U0_9BACI
Length = 184
Score = 62.4 bits (150), Expect(2) = 6e-09
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ YVE+K+AK F+ T + +V ++ + T+ KVEVTI
Sbjct: 5 IRGENIEVTPAIREYVEKKIAKLEKYFTET-PDANVHVNLK-----TYNNNRSKVEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRA--------GPKE 362
++N V+R E+ ++YAAIDL+ DK+ +++K K K + G P+
Sbjct: 58 PMQNLVLRAEEDHEDMYAAIDLIVDKLERQIRKHKTKVNRKFREKGSPTLMFASFDEPEA 117
Query: 363 DV--DEEDFQEYLKEVKMDTQLFDKEEQL 443
V +E++ E +++ D + D EE +
Sbjct: 118 PVLEEEDNDLEVVRQKSFDLKPMDNEEAI 146
Score = 22.3 bits (46), Expect(2) = 6e-09
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 553 VGHSFYVCGNDTTRRS 600
+GHSFYV N T R+
Sbjct: 152 LGHSFYVFTNAETNRT 167
[99][TOP]
>UniRef100_C9RBI8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Ammonifex degensii KC4 RepID=C9RBI8_9THEO
Length = 177
Score = 64.7 bits (156), Expect = 6e-09
Identities = 40/114 (35%), Positives = 69/114 (60%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI ++G+ + VT+A++ YVE+++ K + F++ L E V LS ++ KVE
Sbjct: 1 MRITVRGKNIEVTEALRQYVEKRLGK-LERFANYLGEAQVVLSLE--------RENHKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 356
VTI + ++R E+A +++YAAIDLV DK+ ++++ K K + R G A P
Sbjct: 52 VTI-NMNGMILRGEEATHDMYAAIDLVVDKLERQIERYKGKWLRRRV-EGSAAP 103
[100][TOP]
>UniRef100_C9MUU2 Ribosomal subunit interface protein n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MUU2_9FUSO
Length = 106
Score = 64.7 bits (156), Expect = 6e-09
Identities = 38/101 (37%), Positives = 63/101 (62%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++III G++L +TDAIK Y EEKV+K ++ +S + E+DV L+ DT + G K +
Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKVSK-ISKYSDAITEIDVVLTVE--DTKSEG-PVHKAD 56
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
+Y +++E +LYAAID + D++ +++K KEK
Sbjct: 57 GLVYA-SGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKEK 96
[101][TOP]
>UniRef100_C6SS06 Putative ribosome-associated protein n=2 Tax=Streptococcus mutans
RepID=C6SS06_STRMN
Length = 182
Score = 64.7 bits (156), Expect = 6e-09
Identities = 49/174 (28%), Positives = 83/174 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VTDAI+ YVE K+ K + + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLKK-IEKYFNAEQELDARINLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLAPVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E K +F E + + E+ V+R+K + L P+ +EEA
Sbjct: 101 -------REKKPAAHVFTAEFEAE----EMEEAPAIKVVRTKNITLKPMDIEEA 143
[102][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 64.3 bits (155), Expect = 8e-09
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ +A +F + ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATHHFGNAVREADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VT++ NG V+R ++ NLYA+IDL K+ +L++ KE+ G +
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAASKLARQLRRWKERHSDHHHSHGHSASTTPAT 114
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E V D+Q+ LQ + AEL P +R K + P+S+EEA
Sbjct: 115 E--------AVTDDSQV--DGSLLQGREAEL----PDPGVRRKYFAMPPMSLEEA 155
[103][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 64.3 bits (155), Expect = 8e-09
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VT++ NG V+R ++ NLYA+IDLV K+ +L+K KE+
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVVGKLARQLRKWKER 96
[104][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 62.8 bits (151), Expect(2) = 1e-08
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 4/181 (2%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
V I I GRK+ V+DA++ +VEEK+ A+ F DV L D + + VE
Sbjct: 2 VDIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRV---DKNPSNLERKSVE 58
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWP----GRAGPKE 362
VT++ +RN VVRV + +++Y AID +K+ +L+K K + + + GRA +E
Sbjct: 59 VTVF-VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQE 117
Query: 363 DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALT 542
++ ++T D ++QL +R K + L P++ EEAL
Sbjct: 118 ELAN----------LIETPAEDLDDQL---------------VREKYIDLLPMTEEEALV 152
Query: 543 R 545
+
Sbjct: 153 Q 153
Score = 21.2 bits (43), Expect(2) = 1e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 553 VGHSFYVCGNDTT 591
+GH FYV N TT
Sbjct: 157 LGHDFYVFVNSTT 169
[105][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 63.9 bits (154), Expect = 1e-08
Identities = 51/175 (29%), Positives = 89/175 (50%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+A++ YVE K++K V + H +E+ ++ + + +K KVE
Sbjct: 2 IKCSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTIPT-GSVTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++E + +M + F+KEE + E V+R+K + L P+ VEEA+
Sbjct: 100 --YREKVPTGEMFSTEFNKEEVEEAPAVE--------VVRTKNIELKPMDVEEAI 144
[106][TOP]
>UniRef100_B9DV32 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus uberis 0140J RepID=B9DV32_STRU0
Length = 182
Score = 63.9 bits (154), Expect = 1e-08
Identities = 52/174 (29%), Positives = 83/174 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+AK F E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVEAKLAKIEKYFVED-SEIDTRVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + ++R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTII-LGSMILRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E Q+F E + + E+ V+R+K V L P+ VEEA
Sbjct: 101 -------REKVPTGQVFRSEFETE----EVEEGSEVKVVRTKNVTLKPMDVEEA 143
[107][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 63.9 bits (154), Expect = 1e-08
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R II G+ + VT+ +K + EK+ K F+ E+ VTLS K QK+E
Sbjct: 1 MRYIISGKNIDVTEGLKSAIYEKIGKLEKYFNPEA-EIHVTLSVE--------KDRQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP------ 356
VTI ++ +VR E N++YA+IDLV + I +L+K K K P
Sbjct: 52 VTI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLKKYKSKLKDMNQSAANFNPSFFEDV 110
Query: 357 -KEDVDEED 380
ED DEED
Sbjct: 111 LNEDSDEED 119
[108][TOP]
>UniRef100_C7ML59 Ribosomal subunit interface protein n=1 Tax=Cryptobacterium curtum
DSM 15641 RepID=C7ML59_CRYCD
Length = 188
Score = 63.9 bits (154), Expect = 1e-08
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV- 191
+ I + GRK+PVTDA+K Y EEK+ ++ + ++D ++ + H ++ + +
Sbjct: 1 MEISVTGRKMPVTDALKSYAEEKIGNSMK-----VMDIDPLIA----EVILHVEQNRAIA 51
Query: 192 -----EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP 356
EVT+ T + ++RVE+ E ++YAAID+ K+ +L+K K + + R A
Sbjct: 52 RPAICEVTM-TAKGHIIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAASI 110
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ K K+D A + + V+R K++ L P++ EEA
Sbjct: 111 RS----------AKSAKLDLD------------ALMEELSDDEVVREKSIDLQPLTEEEA 148
Query: 537 L 539
L
Sbjct: 149 L 149
[109][TOP]
>UniRef100_C0MH43 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Steptococcus equi subsp. zooepidemicus H70
RepID=C0MH43_STRS7
Length = 182
Score = 63.5 bits (153), Expect = 1e-08
Identities = 53/174 (30%), Positives = 84/174 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E +Q+F E + + Q E I V+R+K V L P+ VEEA
Sbjct: 101 -------REKVSTSQVFTSEFEAE-QVEETPEI---KVVRTKNVTLKPMDVEEA 143
[110][TOP]
>UniRef100_B4U4G1 Ribosomal subunit interface protein n=1 Tax=Streptococcus equi
subsp. zooepidemicus MGCS10565 RepID=B4U4G1_STREM
Length = 182
Score = 63.5 bits (153), Expect = 1e-08
Identities = 52/174 (29%), Positives = 85/174 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVVEQEIDARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E +Q+F E + + Q E I V+R+K V L P+ VEEA
Sbjct: 101 -------REKMSTSQVFTSEFEAE-QAEETPEI---KVVRTKNVTLKPMDVEEA 143
[111][TOP]
>UniRef100_C5NVZ2 Ribosome-associated factor Y n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NVZ2_9BACL
Length = 181
Score = 63.5 bits (153), Expect = 1e-08
Identities = 46/144 (31%), Positives = 77/144 (53%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R ++G L +T AI+ YVE KV+K F+ +L E +V +A+ + ++K+E
Sbjct: 2 LRYQVRGENLEITQAIREYVENKVSKLEKYFADSL-EANVYANAK-----VYKNNKKKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+T+ LR +R E+ +LYAA+DLV DK+ +++K K K +G G A +E
Sbjct: 56 ITV-PLRGVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGREKGFA------EE 108
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQ 446
L+E + T K +QL+
Sbjct: 109 IILTSELEEAEETTLDLGKVKQLK 132
[112][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 63.5 bits (153), Expect = 1e-08
Identities = 38/105 (36%), Positives = 61/105 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I G+++ +T IK +E K++K S +V VT+SA+ G K+E
Sbjct: 9 MKLTISGKQMELTQGIKDNIESKLSKLDKYISPDT-DVKVTVSAKKG--------RHKIE 59
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI V+R E+++ NLY AIDLV DK++ +L+K K+K R
Sbjct: 60 VTIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLKKYKDKMQKR 104
[113][TOP]
>UniRef100_Q3CZ63 Ribosomal subunit interface protein n=6 Tax=Streptococcus
agalactiae RepID=Q3CZ63_STRAG
Length = 184
Score = 63.2 bits (152), Expect = 2e-08
Identities = 49/175 (28%), Positives = 86/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K++K V + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEAQELDTRVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI + + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTIL-IDSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++E + ++ T F+ E ++R+K V L P+ VEEAL
Sbjct: 100 --YREKIPASQVFTTEFEAEPD--------EEAVSQRIVRTKNVNLKPMDVEEAL 144
[114][TOP]
>UniRef100_A4ECY7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4ECY7_9ACTN
Length = 194
Score = 62.0 bits (149), Expect(2) = 2e-08
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Frame = +3
Query: 21 IIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVT 200
I + GRK VTDA++ +V+EK+ +A+ F VDV L + + VEVT
Sbjct: 3 IKVSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTVDVVLRYEKNPSNPN---PAIVEVT 59
Query: 201 IYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR---GAWPGRAGPKEDVD 371
R V+RV + ++YAAIDL DK+ +L+K K K + GA P E V+
Sbjct: 60 ARA-RGSVIRVAEHGADMYAAIDLSADKVTRQLRKFKTKVVDNRQGGASAADVAPVERVE 118
Query: 372 --------EEDFQEYLKEVKMDTQLFDKEEQL 443
EED ++E +D +E+ L
Sbjct: 119 DLADLLLPEEDDDLLVREKVIDVTPMTEEQAL 150
Score = 20.8 bits (42), Expect(2) = 2e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 553 VGHSFYVCGNDTT 591
+GH FYV N TT
Sbjct: 156 LGHDFYVFENATT 168
[115][TOP]
>UniRef100_Q03M66 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Streptococcus thermophilus LMD-9 RepID=Q03M66_STRTD
Length = 182
Score = 62.8 bits (151), Expect = 2e-08
Identities = 51/175 (29%), Positives = 88/175 (50%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+A++ YVE K++K V + H +E+ ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTIPT-GSVTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++E + +M + F+KEE + E V+R K + L P+ VEEA+
Sbjct: 100 --YREKVPTGEMFSTEFNKEEVEEAPAVE--------VVRIKNIELKPMDVEEAI 144
[116][TOP]
>UniRef100_C0M6F8 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus equi subsp. equi 4047
RepID=C0M6F8_STRE4
Length = 182
Score = 62.8 bits (151), Expect = 2e-08
Identities = 50/174 (28%), Positives = 82/174 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E +Q+F E + ++ V+R+K V L P+ VEEA
Sbjct: 101 -------REKMSTSQVFTSEFEAEK----AEETPEIKVVRTKNVTLKPMDVEEA 143
[117][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 62.8 bits (151), Expect = 2e-08
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T +++ Y + K+ KA+ +F ++E DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPSLREYTQSKLEKAIHHFDGIVQEADVHLSIAKNPS----VPQQIAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VT++ NG V+R ++ NLYA+IDLV K+ +L+K KE+
Sbjct: 57 VTVFA--NGTVIRAQERSQNLYASIDLVATKLCRQLRKYKER 96
[118][TOP]
>UniRef100_C4FCG3 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
DSM 13280 RepID=C4FCG3_9ACTN
Length = 194
Score = 62.0 bits (149), Expect(2) = 3e-08
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ I + GRK VTDA++ +V+EK+ +A+ F DV L + + VE
Sbjct: 1 MEIKVSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPN---PAIVE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI---SRGAWPGRAGPKED 365
VT+ R V+RV + ++YAAIDL +K+ +L+K K + + +G P E
Sbjct: 58 VTVRA-RGSVIRVAEHGADMYAAIDLAAEKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEP 116
Query: 366 V----------DEEDFQEYLKEVKMDTQLFDKEEQLQ 446
V DE+D +KEV++ T + D+E +Q
Sbjct: 117 VADLADLLLPEDEDDQLVRVKEVEL-TPMTDEEALVQ 152
Score = 20.4 bits (41), Expect(2) = 3e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 553 VGHSFYVCGNDTT 591
+GH FYV N T
Sbjct: 156 IGHDFYVFENSVT 168
[119][TOP]
>UniRef100_B9EAE7 Ribosomal subunit interface protein homolog n=1 Tax=Macrococcus
caseolyticus JCSC5402 RepID=B9EAE7_MACCJ
Length = 186
Score = 62.4 bits (150), Expect = 3e-08
Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R I G + VTDAI+ Y+EEK++K F++ + E + + + T+ + KVEV
Sbjct: 3 RFEIHGDNITVTDAIRNYIEEKLSKLERYFTN-VPEANAHVKIK-----TYQDGKSKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKL--------QKIKEKAISRGAWPGRAG 353
TI L++ +R E+ N+LYAA++L+ +K+ ++ +K +EK + +P G
Sbjct: 57 TI-PLKDVTLRAEERHNDLYAAVNLIVEKLERQIRKHKTKVNRKFREKGVKNDIFPVLPG 115
Query: 354 PKEDVDEEDFQEYLKEVKMDTQLFDKEE 437
+ + ++ D E ++ + + D EE
Sbjct: 116 TEPEEEKGDEIEIIRSKQFALKPMDAEE 143
[120][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 62.4 bits (150), Expect = 3e-08
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K + + T EV V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSK-IERYFDTFPEVKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKL--------QKIKEKAISRGAW--PGRAGP 356
+ ++R E+ +++YAAIDLV DKI ++ +K++EK ++ A+ P + G
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSAKTAFILPDQLGQ 114
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
+E +ED E ++ + D + D EE +
Sbjct: 115 EE--VQEDELELVRTKRFDLKPMDVEEAI 141
[121][TOP]
>UniRef100_Q3DA79 Ribosomal subunit interface protein n=2 Tax=Streptococcus
agalactiae RepID=Q3DA79_STRAG
Length = 184
Score = 62.4 bits (150), Expect = 3e-08
Identities = 49/175 (28%), Positives = 85/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K++K F+ +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSKVEKYFNEE-QELDTRVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI + + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTIL-IDSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++E + ++ T F+ E ++R+K V L P+ VEEAL
Sbjct: 100 --YREKIPASQVFTTEFEAEPD--------EEAVSQRIVRTKNVNLKPMDVEEAL 144
[122][TOP]
>UniRef100_B1SBZ3 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SBZ3_9STRE
Length = 182
Score = 62.4 bits (150), Expect = 3e-08
Identities = 48/175 (27%), Positives = 87/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ ++G + VTDAI+ YVE K+ K + + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSVRGENIEVTDAIRNYVESKLGK-IEKYFNAEQELDARVNLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI + + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTIL-VNSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKH-------------- 100
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E +Q+F E + + ++ NV+R+K V L P+ ++EAL
Sbjct: 101 -------REKVPASQIFTSEFEAE----PVDEGPAVNVVRTKHVSLKPMDLDEAL 144
[123][TOP]
>UniRef100_C6QNN3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y4.1MC1 RepID=C6QNN3_9BACI
Length = 183
Score = 62.0 bits (149), Expect = 4e-08
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A++ YVE+K+ K F +T + + V ++ + + K+ K+EVTI
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENT-ENIHVHVNLK-----VYNDKQGKIEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK----------EKAISRGAWPGRAGP 356
+ ++R E+ +++YAAIDLV DK+ +++K K +K + + A P
Sbjct: 58 PMPQLLLRAEERHDDMYAAIDLVADKLERQIRKHKTKVNRKLRDRDKEVKQVATVQTNAP 117
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
ED +EE+F E ++ + D EE +
Sbjct: 118 AEDNEEEEF-EIVRTKHFSLKPMDSEEAI 145
[124][TOP]
>UniRef100_C0WUJ7 Ribosome-associated inhibitor protein Y n=3 Tax=Lactobacillus
RepID=C0WUJ7_LACBU
Length = 194
Score = 62.0 bits (149), Expect = 4e-08
Identities = 52/171 (30%), Positives = 82/171 (47%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ YVE++V+K F +K + + K+ KVEVTI
Sbjct: 13 IRGENIEVTQAIRDYVEKRVSKLEKYFEKDMKNTAHV------NLRVYPDKQAKVEVTI- 65
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
L +R E+ N+LYA++DLV DK+ +++K K K + E+ F+
Sbjct: 66 PLPFLTLRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSR------------EKGFK 113
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
L+ V D Q + Q QF +V+R+K + L P+ EEA+
Sbjct: 114 N-LEFVPNDDQTTSDSDDNQSQF---------DVVRTKRLALKPMDNEEAI 154
[125][TOP]
>UniRef100_C0CJV5 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
DSM 10507 RepID=C0CJV5_9FIRM
Length = 175
Score = 62.0 bits (149), Expect = 4e-08
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ II G+ L VTD ++ VE+K+ K F+ E+ VTLS K QK+E
Sbjct: 1 MNFIISGKNLTVTDGLRTAVEDKLGKLERYFTPD-TEIIVTLSVE--------KSRQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR---GAWPGRAGPKED 365
VTI ++ ++R E N++Y +IDLV + I +L+K K K + + G +A +++
Sbjct: 52 VTI-PVKGNIIRSEQVSNDMYVSIDLVEEVIERQLRKYKTKIVDKEKAGDHFQKAFIEKE 110
Query: 366 VDEEDFQEYLKEVKMD 413
+EED + + K D
Sbjct: 111 YEEEDEVKIQRTKKFD 126
[126][TOP]
>UniRef100_Q49VV1 Uncharacterized protein SSP1964 n=1 Tax=Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305
RepID=Y1964_STAS1
Length = 190
Score = 62.0 bits (149), Expect = 4e-08
Identities = 48/175 (27%), Positives = 81/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGKLERYFN------DVPNATAHVKVKTYQNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L+ +R E+ ++LYA IDL+ +K+ +++K K + R G E
Sbjct: 56 VTI-PLKKVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRG---------E 105
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ L E K ++ + E + + ++R+K L P+ EEA+
Sbjct: 106 QEAFASLPEEKEAVEIQNDENEADNEI---------EIIRAKNFSLKPMDSEEAV 151
[127][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 60.1 bits (144), Expect(2) = 5e-08
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ I + GRK VTDA++ +V+EK+ +A+ F DV L + + VE
Sbjct: 1 MEIKVSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPN---PAIVE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI---SRGAWPGRAGPKED 365
VT+ R V+RV + ++YAAIDL DK+ +L+K K + + +G P E
Sbjct: 58 VTVRA-RGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEP 116
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
V D + L + D QL +R K + L P++ E+AL +
Sbjct: 117 V--ADLADLLIPEEEDDQL----------------------VRVKEIELTPMTEEQALVQ 152
Score = 21.6 bits (44), Expect(2) = 5e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 553 VGHSFYVCGNDTT 591
+GH FYV N TT
Sbjct: 156 LGHDFYVFENSTT 168
[128][TOP]
>UniRef100_Q3AI28 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. CC9605 RepID=Q3AI28_SYNSC
Length = 195
Score = 61.6 bits (148), Expect = 5e-08
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T A++ Y + K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATSHFGDAVREADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VT++ NG V+R ++ NLYA+IDL K+ +L++ KE+
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAAGKLARQLRRWKER 96
[129][TOP]
>UniRef100_C5WIE9 Ribosome-associated factor Y n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WIE9_STRDG
Length = 182
Score = 61.6 bits (148), Expect = 5e-08
Identities = 49/174 (28%), Positives = 84/174 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKSSKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKK--------------- 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+E + ++ T F+ E +++ V+R+K + L P+ VEEA
Sbjct: 100 --HREKVPTGQVFTTEFEAE--------QVDETPEVKVVRTKNLTLKPMDVEEA 143
[130][TOP]
>UniRef100_B9MLV8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Anaerocellum thermophilum DSM 6725
RepID=B9MLV8_ANATD
Length = 181
Score = 61.2 bits (147), Expect = 7e-08
Identities = 50/175 (28%), Positives = 85/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ II G+ + VTDA+K +E+K++K + + +V VTLS K VE
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE--------KISHIVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI ++R E+ N++Y+AIDLV D + +++K K K R D
Sbjct: 52 VTI-PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAK-----------DA 99
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E + M +L + E+++Q + +E + ++K + P+SVEEA+
Sbjct: 100 ESLR------YMTFELEEPEKEVQEENSEF------RIAKTKRFPIKPMSVEEAI 142
[131][TOP]
>UniRef100_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Eggerthella lenta DSM 2243 RepID=C8WMZ8_9ACTN
Length = 191
Score = 61.2 bits (147), Expect = 7e-08
Identities = 49/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 21 IIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVT 200
I + GRK+PVTDA++ Y EEK+ ++ ++ L + + EVT
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFV---EKNPANPRPAVCEVT 59
Query: 201 IYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEED 380
+ T + ++RVE+ E ++YAAID+ K+ +L+K K K + R RA + E
Sbjct: 60 LRT-KGHIIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVDRKL---RAADETIRIEPS 115
Query: 381 FQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
L + +L D E V+R KT+ +P++ EEAL +
Sbjct: 116 AAGELDVDGLMQELSDDE-----------------VVRVKTIEFEPLTEEEALVK 153
[132][TOP]
>UniRef100_B0P2P9 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0P2P9_9CLOT
Length = 179
Score = 61.2 bits (147), Expect = 7e-08
Identities = 48/176 (27%), Positives = 88/176 (50%)
Frame = +3
Query: 9 GTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQK 188
G ++ II G+ + VT+ IK +EEK+ + + + V+VTLS + G QK
Sbjct: 2 GAMKFIISGKNIEVTEGIKAAIEEKLGR-LDKYLVDDTIVNVTLSVQKG--------RQK 52
Query: 189 VEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 368
+EVTI ++ ++R E+ ++Y +IDLV D I ++++ K + +++ + G + +E +
Sbjct: 53 IEVTI-PMKGHIIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQ-KYDGTSFKQEFM 110
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
++ED D E+ R ++RSK + P+ VEEA
Sbjct: 111 EQED---------------DVEDDEIR------------IIRSKKFAIKPMDVEEA 139
[133][TOP]
>UniRef100_A5Z528 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5Z528_9FIRM
Length = 179
Score = 61.2 bits (147), Expect = 7e-08
Identities = 39/105 (37%), Positives = 61/105 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I I G+ + VT+ I+ VEEK+ K F+ + VDVTLS K EQKVE
Sbjct: 1 MKIKIFGKNIEVTEGIRSAVEEKIGKLDKYFAEETR-VDVTLSVN--------KNEQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI ++ ++R E+ +++Y +ID+V + I +L K K K I +
Sbjct: 52 VTI-PVKGRIIRAEEISDDMYVSIDMVEETIERQLVKYKNKIIDK 95
[134][TOP]
>UniRef100_Q1WSW6 Ribosome-associated factor Y n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSW6_LACS1
Length = 184
Score = 60.8 bits (146), Expect = 9e-08
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I ++G + VT AI+ YVE+++AK F +T S + + K KVE
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTAD------STAHVNLKVYSDKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK--------EKAISRGAWPGRA 350
VTI L V+R E+ ++YA+IDLV DK+ +++K K EK + A
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSREKGFKNFEFAPVA 114
Query: 351 GPKEDVDEEDFQEYLKEVKMDTQLFDKEE 437
KE+V+++ F E ++ ++ + D EE
Sbjct: 115 DEKEEVEDKKF-EIVRTKRLSLKPMDSEE 142
[135][TOP]
>UniRef100_A3CPW1 30S ribosomal interface protein S30EA, putative n=1
Tax=Streptococcus sanguinis SK36 RepID=A3CPW1_STRSV
Length = 180
Score = 60.8 bits (146), Expect = 9e-08
Identities = 51/171 (29%), Positives = 81/171 (47%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G L VTDA++ YV K+ K + + +E+D ++ + + +K KVEVTI
Sbjct: 6 IRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLK-----VYREKTAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
L + +R ED ++Y +IDLV DKI +++K K K +
Sbjct: 59 PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK---------------------IE 97
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ +QLF FAE P+ V+RSK + L P+ +EEA+
Sbjct: 98 RKNRNKVATSQLFTD------SFAEEAEEVPSKVVRSKHIDLKPMDLEEAI 142
[136][TOP]
>UniRef100_C5QVF5 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis W23144 RepID=C5QVF5_STAEP
Length = 189
Score = 60.8 bits (146), Expect = 9e-08
Identities = 50/175 (28%), Positives = 85/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEKV K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFN------NVPNAVAHVRVKTYSNSTTKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L++ +R E+ ++LYA IDL+ +K+ +++K K + + ++ D+
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRK--------HRDRGDQ 106
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ F ++E + Q D E + N I ++RSK L P+ EEA+
Sbjct: 107 DIFVAEVQESTANNQADDIESE--------NDI---EIIRSKQFSLKPMDSEEAV 150
[137][TOP]
>UniRef100_C3WRR7 Sigma(54) modulation protein n=3 Tax=Fusobacterium
RepID=C3WRR7_9FUSO
Length = 181
Score = 60.8 bits (146), Expect = 9e-08
Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+ Y L ++ E++LYA+ID D + + L+K KEK RA ++D +
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKKHKEKR-------SRAKVQDDTRK 107
Query: 375 EDFQ-EYLKEVKMDTQLFDKEEQLQRQFAEL 464
+ + +Y+ E + F E++L R + L
Sbjct: 108 KSYSFDYIVEA---GEKFSDEKKLVRVYLPL 135
[138][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 60.8 bits (146), Expect = 9e-08
Identities = 53/175 (30%), Positives = 84/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VT+A++ YVE K++K F+ D L+AR + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSKVEKYFNE-----DQELNARV-NLKVYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI T + +R ED ++Y +IDLV DKI +++K K K + P +V
Sbjct: 56 VTIPT-GSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIARKHR---EKVPTGEVFS 111
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
DF EQ++ A V+R+K + L P+ VEEA+
Sbjct: 112 ADF---------------NNEQVEEAPA-------VEVVRTKNIELKPMDVEEAI 144
[139][TOP]
>UniRef100_C2EGB2 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
salivarius ATCC 11741 RepID=C2EGB2_9LACO
Length = 184
Score = 60.8 bits (146), Expect = 9e-08
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I ++G + VT AI+ YVE+++AK F +T S + + K KVE
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTAD------STAHVNLKVYSDKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK--------EKAISRGAWPGRA 350
VTI L V+R E+ ++YA+IDLV DK+ +++K K EK + A
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSREKGFKNFEFAPVA 114
Query: 351 GPKEDVDEEDFQEYLKEVKMDTQLFDKEE 437
KE+V+++ F E ++ ++ + D EE
Sbjct: 115 DEKEEVEDKKF-EIVRTKRLSLKPMDSEE 142
[140][TOP]
>UniRef100_C0X601 Ribosome-associated inhibitor protein Y n=22 Tax=Enterococcus
faecalis RepID=C0X601_ENTFA
Length = 189
Score = 60.8 bits (146), Expect = 9e-08
Identities = 54/174 (31%), Positives = 85/174 (48%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K FS + E V ++ + + +K KVEV
Sbjct: 9 RYNVRGENIEVTEAIRDYVEKKVGKLERYFSDS-PEATVHVNLK-----VYTEKTAKVEV 62
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
TI L V+R E+ +LYA+IDLV DK+ +++K K K + GR K V
Sbjct: 63 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAV--- 118
Query: 378 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
F E+ + +EL +++R+K + L P+ EEA+
Sbjct: 119 ---------------FLVGEETEETPSEL------DIVRTKRLSLKPMDSEEAV 151
[141][TOP]
>UniRef100_A5CYJ2 Ribosome-associated protein Y n=1 Tax=Pelotomaculum
thermopropionicum SI RepID=A5CYJ2_PELTS
Length = 175
Score = 60.5 bits (145), Expect = 1e-07
Identities = 35/107 (32%), Positives = 63/107 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ ++GR + VTDA+K YV ++V K + + + VTL+ K+ +VE
Sbjct: 1 MKVQVRGRNIDVTDALKDYVVKRVGK-LDKYIDNFGDAQVTLAVE--------KESHRVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGA 335
VTI + ++R E++ ++Y +IDLV DK+ +++K K K + RGA
Sbjct: 52 VTI-PVNGMILRGEESTGDMYTSIDLVVDKLEKQIEKYKGKLLKRGA 97
[142][TOP]
>UniRef100_D0CH01 Sigma 54 modulation protein n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CH01_9SYNE
Length = 195
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++++I GR L +T +++ Y + K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPSLRDYTQTKLERATSHFGDAVREADVHLSVARNPR----VPQQTAE 56
Query: 195 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VT++ NG V+R ++ NLYA+IDL K+ +L++ KE+
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAAGKLARQLRRWKER 96
[143][TOP]
>UniRef100_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7N909_LEPBD
Length = 106
Score = 60.5 bits (145), Expect = 1e-07
Identities = 34/101 (33%), Positives = 63/101 (62%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++III G++L +TDAIK Y EEK+++ ++ +S + E+DV L+ DT + G K +
Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISR-ISKYSDAITEIDVVLTVE--DTKSEG-PVHKAD 56
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
++ +++E +LYAAID + D++ +++K KE+
Sbjct: 57 GLVFA-SGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKER 96
[144][TOP]
>UniRef100_C4W9L5 Ribosomal subunit interface protein n=1 Tax=Staphylococcus warneri
L37603 RepID=C4W9L5_STAWA
Length = 191
Score = 60.5 bits (145), Expect = 1e-07
Identities = 48/175 (27%), Positives = 83/175 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F+ +V + T+ KVE
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------NVPNAVAHVKVKTYSNSTTKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L++ +R E+ ++LYA +DL+ +K+ +++K K + ++ D
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGVDLITNKLERQVRKYKTRV-----------NRKHRDR 103
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
D + ++ EV+ + + AE N ++RSK L P+ EEA+
Sbjct: 104 GDQEVFVAEVQ-------EAPPEEISGAEENNDNDIEIIRSKQFSLKPMDSEEAV 151
[145][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 60.5 bits (145), Expect = 1e-07
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L ++Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYS--------EKQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG----------RAGP 356
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSPKTTFILTESAAT 114
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
E+V E+D E ++ + D + D EE +
Sbjct: 115 LEEVKEDDL-ELVRTKRFDLKPMDVEEAI 142
[146][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 60.5 bits (145), Expect = 1e-07
Identities = 50/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F++ V T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAVAHV------KVKTYQNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L+N +R E+ ++LYA IDLV K+ +++K K + + G P+ + E
Sbjct: 56 VTI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRDNGE--PEPFIAE 112
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ Q + E T E +++ ++RSK L P+ EEA+
Sbjct: 113 Q--QTVVNEDVEATSESSNENEIE-------------IIRSKQFSLKPMDSEEAV 152
[147][TOP]
>UniRef100_B1HN67 Hypothetical yvyD protein n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HN67_LYSSC
Length = 183
Score = 60.1 bits (144), Expect = 1e-07
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ YVE K+ K F+ DV +A + + K+ KVEVTI
Sbjct: 6 IRGENIEVTPAIREYVENKIEKVERYFNE-----DVNANANV-NLKVYNDKQTKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG---------PK 359
++N +R E+ N++YAA+DL+ DK+ +++K K K + AG
Sbjct: 59 PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREGAGLYFATTQAVAD 118
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEE 437
+DEE++ ++ + D + D+EE
Sbjct: 119 TTLDEEEY-SIVRTKQFDLKPMDQEE 143
[148][TOP]
>UniRef100_C4DYV6 SSU ribosomal protein S30P n=1 Tax=Streptobacillus moniliformis DSM
12112 RepID=C4DYV6_9FUSO
Length = 102
Score = 60.1 bits (144), Expect = 1e-07
Identities = 38/105 (36%), Positives = 61/105 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++III G++L +T+ IK YVE K++K + + + E DVTL+ T + GK K
Sbjct: 1 MKIIISGKQLEMTEPIKKYVESKISK-ITKYLENIPETDVTLTVE--PTKSEGKL-YKAI 56
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
T+Y N +R E+ + +LYAAID + + +++K KEK R
Sbjct: 57 ATVYA-PNKTIRQEETDADLYAAIDNLSSGLERQVRKYKEKMKDR 100
[149][TOP]
>UniRef100_C2KX79 Ribosome-associated inhibitor A n=1 Tax=Oribacterium sinus F0268
RepID=C2KX79_9FIRM
Length = 176
Score = 60.1 bits (144), Expect = 1e-07
Identities = 50/174 (28%), Positives = 82/174 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I I GR L +TD +K VE+K+ K + F +VTLS + K QK+E
Sbjct: 1 MKITITGRNLSLTDGLKNGVEKKLGK-LDKFFQAETPCNVTLSTQ--------KDMQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI ++ V+R E+A ++Y +IDLV D + +++K K K I R
Sbjct: 52 VTI-PVKGSVIRAEEATPDMYQSIDLVVDVLERQIRKYKNKLIQR--------------H 96
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
+ ++ E + D+EE ++R+K + L P++ EEA
Sbjct: 97 QAASDFSSEFIEEKPAQDEEE--------------IKIVRTKHIDLKPMTAEEA 136
[150][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 60.1 bits (144), Expect = 1e-07
Identities = 50/175 (28%), Positives = 79/175 (45%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+E+K+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFN------DVPNAVAHVKVKTYQNSTTKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L+N +R E+ ++LYA IDLV K+ +++K K + + G +
Sbjct: 56 VTI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHG--------EP 106
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E F ++E E + AE ++RSK L P+ EEA+
Sbjct: 107 EAFVAEVQEA--------PPENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAV 153
[151][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 59.7 bits (143), Expect = 2e-07
Identities = 51/173 (29%), Positives = 85/173 (49%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
+ GR + VTDA++ YVEEK+ + + FS + + V L+ R D G++ +VEV +
Sbjct: 6 LSGRNVDVTDAMRDYVEEKLTR-LDRFSDQITDARVVLTVR--DVRDAGRRN-RVEVQL- 60
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
+ NG++R E+ ++YAAID D + +L+K K K + A P Q
Sbjct: 61 NVPNGIIRAEEHHADMYAAIDRASDVLERQLRKFKTKYLRHRQ---EAAPPP-------Q 110
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEALTR 545
L E ++ L D E + ++R+K L P+S E+A+T+
Sbjct: 111 PGLAEADVNAGLDDTE-------------FRPEIVRTKRFDLRPMSPEDAVTQ 150
[152][TOP]
>UniRef100_C4L5L1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sp. AT1b RepID=C4L5L1_EXISA
Length = 187
Score = 59.7 bits (143), Expect = 2e-07
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AIK YVE+K+ K F+ ++ + + ++QKVEVTI
Sbjct: 5 IRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYN------EKQKVEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
+ N ++R ED ++YAAIDLV DK+ +++K K K +G G+ G
Sbjct: 58 PMPNLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGR--GKEG--------GVG 107
Query: 387 EYLKEVK--MDT-QLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
EY K ++ DT ++D++E AEL ++R+K L P+ EEA+
Sbjct: 108 EYFKSLEGPDDTPAVYDEDE------AEL------ELVRTKRFTLKPMDTEEAI 149
[153][TOP]
>UniRef100_A3IC40 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. B14905
RepID=A3IC40_9BACI
Length = 183
Score = 59.7 bits (143), Expect = 2e-07
Identities = 36/97 (37%), Positives = 57/97 (58%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ YVE K+ K F+ DV +A + + K+ KVEVTI
Sbjct: 6 IRGENIEVTPAIREYVENKIEKVERYFNE-----DVNANANV-NLKVYNDKQTKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
++N +R E+ N++YAA+DL+ DK+ +++K K K
Sbjct: 59 PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTK 95
[154][TOP]
>UniRef100_Q8RG57 Probable sigma(54) modulation protein n=1 Tax=Fusobacterium
nucleatum subsp. nucleatum RepID=Q8RG57_FUSNN
Length = 181
Score = 59.3 bits (142), Expect = 3e-07
Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+ Y L ++ E++LYA+ID D + + L+K KEK RA ++D +
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKKHKEKR-------SRAKVQDDTRK 107
Query: 375 EDFQ-EYLKEVKMDTQLFDKEEQLQRQFAEL 464
+ + +Y+ V+ + +L D E++L R + L
Sbjct: 108 KSYSFDYI--VEPEEKLSD-EKKLVRVYLPL 135
[155][TOP]
>UniRef100_C1DQ52 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Azotobacter vinelandii DJ RepID=C1DQ52_AZOVD
Length = 102
Score = 59.3 bits (142), Expect = 3e-07
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I G +L VTDA++ YVEEK+++ +F + V V ++ K +QK+E
Sbjct: 1 MQVNISGHQLDVTDALRDYVEEKISRLERHFDR-ITSVQVIMTVE--------KLKQKIE 51
Query: 195 VTIYTLRNGVVRVEDAEN-NLYAAIDLVCDKIRAKLQKIKEKAISR 329
T++ +G V +AE+ ++YAAIDL+ DK+ +L K KEK I R
Sbjct: 52 ATLHV--SGAEVVANAEHEDMYAAIDLLADKLDRQLIKHKEKQIER 95
[156][TOP]
>UniRef100_A4XJ41 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Caldicellulosiruptor saccharolyticus DSM 8903
RepID=A4XJ41_CALS8
Length = 182
Score = 59.3 bits (142), Expect = 3e-07
Identities = 49/175 (28%), Positives = 87/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ II G+ + VTDA+K +E+K++K + + +V VTLS K VE
Sbjct: 2 MNFIISGKNIEVTDALKDRIEKKLSK-LERYVKMNCDVHVTLSVE--------KIRHIVE 52
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI ++R E+A N++Y+AIDLV D + +++K K K R +D +
Sbjct: 53 VTI-PFYGMILRAEEASNDMYSAIDLVVDSLERQIRKFKTKIAKRA---------KDAES 102
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ + +E + +T ++EE + + A ++K + P+SV+EA+
Sbjct: 103 LRYMTFEEEAQQET---NQEENGEFKIA-----------KTKRFPIKPMSVDEAI 143
[157][TOP]
>UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9BUA9_ENTFC
Length = 183
Score = 59.3 bits (142), Expect = 3e-07
Identities = 53/174 (30%), Positives = 87/174 (50%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K FS D + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
TI L V+R E+ +LYA+IDLV DK+ +++K K K R + ++
Sbjct: 57 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKI-------NRKSRETGMNTA 108
Query: 378 DFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
D T LF++E++ + +EL +++R+K + L P+ EEA+
Sbjct: 109 D----------ATALFNEEDENEND-SEL------DIVRTKRLSLKPMDSEEAV 145
[158][TOP]
>UniRef100_C5QQC2 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis M23864:W1 RepID=C5QQC2_STAEP
Length = 191
Score = 59.3 bits (142), Expect = 3e-07
Identities = 47/175 (26%), Positives = 82/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEK+ K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------NVPNAVAHVKVKTYSNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L++ +R E+ ++LYA IDL+ +K+ +++K K + + R ++V
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRK----HRDRGDQEVFV 110
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ QE E + D + ++ ++RSK L P+ EEA+
Sbjct: 111 AEVQEATPEEVSGAEEPDNDSDIE-------------IIRSKQFSLKPMDSEEAV 152
[159][TOP]
>UniRef100_C4BVH6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=1
Tax=Sebaldella termitidis ATCC 33386 RepID=C4BVH6_9FUSO
Length = 106
Score = 59.3 bits (142), Expect = 3e-07
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV- 191
+ III GR+L VT+ IK Y EEK+ + F H + E+DVTLS K E ++
Sbjct: 1 MNIIISGRRLEVTEPIKKYAEEKIGRVNKYFDH-ITEIDVTLSVE------KSKVEGEIH 53
Query: 192 EVTIYTLRNGV-VRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
+ NG+ ++VE + +LYAAID D + K+++ KEK
Sbjct: 54 RADVLLFGNGLKLKVEMEDKDLYAAIDKATDVLERKVRQHKEK 96
[160][TOP]
>UniRef100_C3WX26 Sigma(54) modulation protein n=2 Tax=Fusobacterium
RepID=C3WX26_9FUSO
Length = 181
Score = 59.3 bits (142), Expect = 3e-07
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+ Y L ++ E++LYA+ID D + + L+K KEK RA ++D +
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKKHKEKR-------SRAKIQDDTRK 107
Query: 375 EDFQ-EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ +Y+ E EE+L + +L R+Y + L P+ + EA+
Sbjct: 108 RSYSFDYIVE---------PEEKLSNE-KKLVRVY---------LPLKPMEISEAI 144
[161][TOP]
>UniRef100_C2ECJ0 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
ruminis ATCC 25644 RepID=C2ECJ0_9LACO
Length = 186
Score = 59.3 bits (142), Expect = 3e-07
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I ++G + VT +I+ YVE+K+AK F D + S + + K KVE
Sbjct: 2 LKINVRGENIEVTGSIREYVEKKLAKLEKYFE------DTSSSTAHVNLKVYSDKNCKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIK--------EKAISRGAWPGRA 350
VTI L V+R E+ ++YA+IDLV DK+ +++K K EK + A
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKLNRKSREKGFKTFEFVPTA 114
Query: 351 GPKEDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
PKE E+ E ++ + + D EE +
Sbjct: 115 DPKEAAAEDKKFEIVRTKSVSLKPMDAEEAI 145
[162][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 59.3 bits (142), Expect = 3e-07
Identities = 48/171 (28%), Positives = 85/171 (49%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFNET-PDANVHVNLK-----VYSDKSAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
L N V+R E+ +LYA++DL+ DK+ +++K K K + ++ E+D+
Sbjct: 59 PLPNLVLRAEETNGDLYASVDLIADKLERQIRKHKTKVNRKF--------RDKGSEKDYF 110
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ E+ T E + Y ++R+K+ L P+ EEA+
Sbjct: 111 AF-SEINDST-----------PSEETDSDYDIEIVRTKSFSLKPMDSEEAV 149
[163][TOP]
>UniRef100_P47995 Uncharacterized protein Sca_0400 n=1 Tax=Staphylococcus carnosus
subsp. carnosus TM300 RepID=Y400_STACT
Length = 188
Score = 59.3 bits (142), Expect = 3e-07
Identities = 45/175 (25%), Positives = 85/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+E+KV K F++ + V+ + + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKLERYFTN-VPNVNAHVKVK-----TYANSSTKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R E+ ++LYA IDL+ +K+ +++K K + + +++ +
Sbjct: 56 VTI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRK--------KRKESEH 106
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E F + DK+++++ ++RSK L P+ EEA+
Sbjct: 107 EPFPATPETPPETAVDHDKDDEIE-------------IIRSKQFSLKPMDSEEAV 148
[164][TOP]
>UniRef100_P17160 Probable sigma(54) modulation protein n=1 Tax=Azotobacter
vinelandii RepID=RP5M_AZOVI
Length = 107
Score = 59.3 bits (142), Expect = 3e-07
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I G +L VTDA++ YVEEK+++ +F + V V ++ K +QK+E
Sbjct: 1 MQVNISGHQLDVTDALRDYVEEKISRLERHFDR-ITSVQVIMTVE--------KLKQKIE 51
Query: 195 VTIYTLRNGVVRVEDAEN-NLYAAIDLVCDKIRAKLQKIKEKAISR 329
T++ +G V +AE+ ++YAAIDL+ DK+ +L K KEK I R
Sbjct: 52 ATLHV--SGAEVVANAEHEDMYAAIDLLADKLDRQLIKHKEKQIER 95
[165][TOP]
>UniRef100_UPI0000E7FCDE PREDICTED: frizzled homolog 8 (Drosophila) n=1 Tax=Gallus gallus
RepID=UPI0000E7FCDE
Length = 275
Score = 59.3 bits (142), Expect = 3e-07
Identities = 61/187 (32%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Frame = +1
Query: 10 ALSASSSRAASCQ*LMPSSCTWRRRLLRPLPTSRTRSRRWTSRCPLAAATPAPTARRSRR 189
A ASSS A + PS+ R RP S + RR R + A+P PT
Sbjct: 30 ATCASSSAACT----PPSAWRTTRSRCRPAAASASGPRRAARRSCASTASPGPTG----- 80
Query: 190 *R*PFTRCATAWCAWRMRRTTCTLPSIWFATRSAPSSRRSRRRPSA---AAPGPAA---- 348
CA C R T S W T +AP+S R RRRP + AAPGPAA
Sbjct: 81 -------CAATGCRSRAAPTR----SAW--TTTAPTSPRPRRRPPSPPSAAPGPAAPPGR 127
Query: 349 -------PAPRRTWMRRTSRSTSRRSRWTLSCLTRRSSCSASSPS*TASTPPTSCAPRPW 507
P PR RR + + +R C T + C+ TA T P+SC+
Sbjct: 128 PPRPPPRPRPRPRARRRPASRAASAARLWCRCPTSGTRCT------TAPTTPSSCS---- 177
Query: 508 CSTPSAW 528
ST AW
Sbjct: 178 -STSCAW 183
[166][TOP]
>UniRef100_Q7NMI0 Glr0786 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NMI0_GLOVI
Length = 187
Score = 58.9 bits (141), Expect = 3e-07
Identities = 34/101 (33%), Positives = 53/101 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I G+ + VT+ I+ YV K+ K A+F VDV LS + E
Sbjct: 1 MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVA---RNPRISRSHSAE 57
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VT+ ++R E+ NLYA+IDLV DK+ +++K KE+
Sbjct: 58 VTVQA-SGTIIRAEEETENLYASIDLVADKLHRQMRKYKER 97
[167][TOP]
>UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis
NBRC 100599 RepID=C0Z6T8_BREBN
Length = 185
Score = 58.9 bits (141), Expect = 3e-07
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLK-EVDVTLSARGGDTGTHGKKEQKVEVTI 203
I+G + VT A++ YVE+KV + F EV VT+ G+ GT +EVTI
Sbjct: 5 IRGENIQVTAALREYVEKKVGRLEKYFETPQPTEVQVTMHVHRGE-GT-------IEVTI 56
Query: 204 YTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS--RGAWPGRAGPKE----- 362
L ++R E+ ++YAAIDLV +K+ +++K K K + R GR +E
Sbjct: 57 -PLSGVIIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLRVDSTGRIAQRESQPVA 115
Query: 363 ----DVDEEDFQ-EYLKEVKMDTQLFDKEEQLQR 449
DVDEED + ++ + D + D +E + +
Sbjct: 116 VMIPDVDEEDIDIDIVRTKRFDLKPMDAQEAVMQ 149
[168][TOP]
>UniRef100_C3WKA5 Sigma(54) modulation protein n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WKA5_9FUSO
Length = 181
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I GRK+ +TDAIK Y EEK+++ V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTG----NAHVTE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+ Y L ++ E +LYA+ID D + +L+K KEK RA ++D +
Sbjct: 56 ILAY-LSGSTLKATATETDLYASIDKAVDIMENQLKKHKEKR-------SRAKVQDDTRK 107
Query: 375 EDFQ-EYLKEVKMDTQLFDKEEQLQRQFAEL 464
+ + +Y+ E + + E++L R + L
Sbjct: 108 KSYSFDYIVEPE---EKISDEKKLVRVYLPL 135
[169][TOP]
>UniRef100_B7IPV2 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=B7IPV2_BACC2
Length = 180
Score = 58.9 bits (141), Expect = 3e-07
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 MDEVEEDELELVRTKRFDLKPMDVEEAI 142
[170][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 58.9 bits (141), Expect = 3e-07
Identities = 54/171 (31%), Positives = 84/171 (49%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T EV V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEVKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
+ ++R E+ +++YAAIDLV DK+ +++K K K + G PK +
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKVERQIRKHKTKVNRKLREKG--SPKTAFILTEPA 112
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
L+EV KE++L+ ++R+K L P+ VEEA+
Sbjct: 113 ATLEEV--------KEDELE-------------LVRTKRFDLKPMDVEEAI 142
[171][TOP]
>UniRef100_A9VQA3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Bacillus cereus group RepID=A9VQA3_BACWK
Length = 180
Score = 58.9 bits (141), Expect = 3e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q++EVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRIEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[172][TOP]
>UniRef100_C2SSP0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus BDRD-ST196
RepID=C2SSP0_BACCE
Length = 180
Score = 58.9 bits (141), Expect = 3e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q++EVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRIEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSVKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[173][TOP]
>UniRef100_C2Q3D0 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2Q3D0_BACCE
Length = 180
Score = 58.9 bits (141), Expect = 3e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q++EVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRIEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSIKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[174][TOP]
>UniRef100_B5CNW3 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CNW3_9FIRM
Length = 186
Score = 58.9 bits (141), Expect = 3e-07
Identities = 36/105 (34%), Positives = 59/105 (56%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ II G+ + VT +K +E+K+ K F+ E++VTLS G QK+E
Sbjct: 1 MNFIISGKNIEVTPGLKDAIEQKLGKLERYFTPET-EINVTLSVEKG--------RQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI ++ ++R E +N+Y +IDLV + I +L+K K K ++R
Sbjct: 52 VTI-PVKGNIIRSEQTSDNMYVSIDLVEEVIERQLRKYKNKLVAR 95
[175][TOP]
>UniRef100_Q5HQX7 Uncharacterized protein SERP0419 n=3 Tax=Staphylococcus epidermidis
RepID=Y419_STAEQ
Length = 189
Score = 58.9 bits (141), Expect = 3e-07
Identities = 49/175 (28%), Positives = 84/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+EEKV K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFN------NVPNAVAHVRVKTYSNSTTKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L++ +R E+ ++LYA IDL+ +K+ +++K K + + ++ D+
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRK--------HRDRGDQ 106
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ F ++E + D E + N I ++RSK L P+ EEA+
Sbjct: 107 DIFVAEVQESTTNNHADDIESE--------NDI---EIIRSKQFSLKPMDSEEAV 150
[176][TOP]
>UniRef100_Q03SQ1 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Lactobacillus brevis ATCC 367 RepID=Q03SQ1_LACBA
Length = 186
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 1/172 (0%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEV-DVTLSARGGDTGTHGKKEQKVEVTI 203
I+G + VTDAI+ YVE++++K F + ++ + + L + K KVEVTI
Sbjct: 6 IRGENIEVTDAIRDYVEKRISKLEKYFDNNVEAIAHINLKV-------YQNKTAKVEVTI 58
Query: 204 YTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF 383
L +R E+ +LYA++DLV DK+ +++K K K V+ +
Sbjct: 59 -PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTK----------------VNRKSR 101
Query: 384 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ K + T+ + ++ + E V+R+K V L P+ EEA+
Sbjct: 102 EKGYKNLDFSTETSESDKPAEGSELE--------VVRTKRVSLKPMDTEEAV 145
[177][TOP]
>UniRef100_A8MJN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJN7_ALKOO
Length = 181
Score = 58.5 bits (140), Expect = 4e-07
Identities = 36/107 (33%), Positives = 63/107 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++I+ GR + +TDA++ VE K++K F + L E TLS + K Q +E
Sbjct: 1 MKVIVSGRNMNITDALRDTVESKLSKLDKFFYNEL-EAQATLSVQ--------KNRQIIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGA 335
VTI + ++RVE+A +++Y++ID DK+ +L+K K K +R +
Sbjct: 52 VTI-PINGSILRVEEATDDMYSSIDNAVDKLTRQLRKQKSKLENRNS 97
[178][TOP]
>UniRef100_A2RIX0 Putative Sigma 54 modulation protein n=2 Tax=Lactococcus lactis
RepID=A2RIX0_LACLM
Length = 185
Score = 58.5 bits (140), Expect = 4e-07
Identities = 48/175 (27%), Positives = 86/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VTDAI+ YVE+K+ K F+ EV ++ + + +K KVE
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDG-HEVTAYVNLK-----VYTEKRAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT+ +N +R ED ++Y++ID V +K+ +++K K + + P A P V
Sbjct: 56 VTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAVPTGQVFG 111
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++F +DT E+ + +++R+K V L P+ EEA+
Sbjct: 112 DEF------APLDTTDEVAEDHV-------------DIVRTKHVALKPMDAEEAV 147
[179][TOP]
>UniRef100_C4V4X1 Ribosome-associated inhibitor A n=1 Tax=Selenomonas flueggei ATCC
43531 RepID=C4V4X1_9FIRM
Length = 181
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/171 (27%), Positives = 79/171 (46%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G+ + VT A++ YVE++V K F + + E+ V LS G K KVEVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGKITKYFDN-VGEIAVLLSVEG--------KHHKVEVTAP 56
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
R ++R E+ ++Y++IDLV +K+ +++K K K R G
Sbjct: 57 VARGILLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLARRFRQGGFKA----------- 105
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ E + E + +YP V+++K L P+ V+EA+
Sbjct: 106 -------------EAVETFAQPIPEEDELYP--VVKTKRFTLQPMDVQEAI 141
[180][TOP]
>UniRef100_C2YZ14 Ribosome-associated factor Y n=1 Tax=Bacillus cereus AH1271
RepID=C2YZ14_BACCE
Length = 180
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSVKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[181][TOP]
>UniRef100_C2U573 Ribosome-associated factor Y n=3 Tax=Bacillus cereus
RepID=C2U573_BACCE
Length = 180
Score = 58.5 bits (140), Expect = 4e-07
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSVKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDELELVRTKRFDLKPMDVEEAI 142
[182][TOP]
>UniRef100_B7HEI9 Ribosomal subunit interface protein n=9 Tax=Bacillus cereus group
RepID=B7HEI9_BACC4
Length = 180
Score = 58.5 bits (140), Expect = 4e-07
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSIKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDELELVRTKRFDLKPMDVEEAI 142
[183][TOP]
>UniRef100_B5UPY3 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B5UPY3_BACCE
Length = 180
Score = 58.5 bits (140), Expect = 4e-07
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDELELVRTKRFDLKPMDVEEAI 142
[184][TOP]
>UniRef100_A0RKX8 Sigma 54 modulation protein / SSU ribosomal protein S30P n=26
Tax=Bacillus cereus group RepID=A0RKX8_BACAH
Length = 180
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[185][TOP]
>UniRef100_A5TX76 Ribosome-associated protein Y n=1 Tax=Fusobacterium nucleatum
subsp. polymorphum ATCC 10953 RepID=A5TX76_FUSNP
Length = 181
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
+ Y L ++ E +LYA+ID D + L+K KEK RA ++D +
Sbjct: 56 ILAY-LSGSTLKATATETDLYASIDKAVDIMEGLLKKHKEKR-------SRAKVQDDTRK 107
Query: 375 EDFQ-EYLKEVKMDTQLFDKEEQLQRQFAEL 464
+ + +Y+ V+ + +L D E++L R + L
Sbjct: 108 KSYSFDYI--VEPEEKLSD-EKKLVRVYLPL 135
[186][TOP]
>UniRef100_B5GAS7 Truncated magnesium or manganese-dependent protein phosphatase
(Fragment) n=1 Tax=Streptomyces sp. SPB74
RepID=B5GAS7_9ACTO
Length = 445
Score = 58.5 bits (140), Expect = 4e-07
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Frame = +1
Query: 7 RALSASSSRAASCQ*LMPSSCTWRRRLLRPLPTSRTRSRRWTSRCPLA-----------A 153
R ++SS AA+ + C+ RR P +SR SR + CP
Sbjct: 155 RNATSSSPWAAASPRASSAPCSTSRRRTSPRDSSRRCSRAPSRTCPAPRSRCVTGPPAPG 214
Query: 154 ATPAPTARRSRR*R*PFTRCATAWCAWRMRRTTCTLPSIWFATRSAPSSRRSRRRPSAAA 333
AT A T S R ++A C R TT T P W ++ +SR + RP A
Sbjct: 215 ATSAATGTTSYRCPAAVPAPSSATC----RATTRTPPPSW----ASSASRCAPTRPRATR 266
Query: 334 PGPAAPAPRRTWMRRTSRSTSRRSRWTLSCLTRRSSCSASSPS*TASTPPTSCAPRPWCS 513
P P+ PAPR +W T ++ S + SS SA S +S PPT AP C
Sbjct: 267 PPPSWPAPRSSWTSWTPTASRPASTRRPTSAPESSSSSAPGTSTPSSWPPT--APPAACP 324
Query: 514 TPSAWR 531
+P+ R
Sbjct: 325 SPAGCR 330
[187][TOP]
>UniRef100_UPI0001B43CAF ribosomal subunit interface protein n=2 Tax=Listeria monocytogenes
RepID=UPI0001B43CAF
Length = 101
Score = 58.2 bits (139), Expect = 6e-07
Identities = 36/98 (36%), Positives = 59/98 (60%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKA 320
L N V+R E+ +LYA+IDL+ DK+ +++K K K+
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKNKS 96
[188][TOP]
>UniRef100_Q8ENI5 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
RepID=Q8ENI5_OCEIH
Length = 185
Score = 58.2 bits (139), Expect = 6e-07
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 1/172 (0%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANF-SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTI 203
I+G + VT AIK YVE+K++K F S +V V LS EQ++EVTI
Sbjct: 5 IRGENIEVTGAIKEYVEKKISKLERYFDSAPNTDVHVNLSVYND--------EQRIEVTI 56
Query: 204 YTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF 383
+ N ++R E +LYAA+DLV DK+ +++K K K I+R + PK E +
Sbjct: 57 -PMTNLLLRGEVQHIDLYAAVDLVVDKLERQIRKHKTK-INR-KFRQNGSPKHAFAEMEK 113
Query: 384 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ L E + D E QL+ ++R+K L P+ EEA+
Sbjct: 114 EARLAEDEED------ENQLE-------------IVRTKRFNLKPMDSEEAI 146
[189][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 58.2 bits (139), Expect = 6e-07
Identities = 50/171 (29%), Positives = 82/171 (47%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
L N V+R E+ +LYA+IDL+ DK+ +++K K K + G E D+
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGA--------ERDYF 110
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
Y +V T + E + ++R+K L P+ EEA+
Sbjct: 111 AY-SDVNGSTPPEENESD-----------FDLEIVRTKQFSLKPMDSEEAV 149
[190][TOP]
>UniRef100_D0BMS6 Ribosomal subunit interface protein n=1 Tax=Granulicatella elegans
ATCC 700633 RepID=D0BMS6_9LACT
Length = 182
Score = 58.2 bits (139), Expect = 6e-07
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+AI+ Y E+K++K F DV + + + +K KVEVTI
Sbjct: 6 IRGENIEVTEAIRNYAEKKLSKLEKYFG------DVANATVHVNLKVYTEKTAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP-----KEDVD 371
L V+R E+ +LY +IDLV DK+ +++K K K + G P E VD
Sbjct: 59 PLPYLVLRAEETSGDLYGSIDLVIDKLERQVRKYKTKINRKSREKGFDIPVAPVVPEPVD 118
Query: 372 E-EDFQEYLKEVKMDTQLFDKEE 437
E E E ++ ++D + D EE
Sbjct: 119 EDESVLEIVRTKRVDLKPMDSEE 141
[191][TOP]
>UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus faecium RepID=C9BP47_ENTFC
Length = 183
Score = 58.2 bits (139), Expect = 6e-07
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K FS D + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
TI L V+R E+ +LYA+IDLV DK+ +++K K K I+R +
Sbjct: 57 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS-------------- 100
Query: 378 DFQEYLKEVKMDT----QLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E M+T LF++E++ + +EL +++R+K + L P+ EEA+
Sbjct: 101 ------RETGMNTADAAALFNEEDENEND-SEL------DIVRTKRLSLKPMDSEEAV 145
[192][TOP]
>UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC
Length = 183
Score = 58.2 bits (139), Expect = 6e-07
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K FS D + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
TI L V+R E+ +LYA+IDLV DK+ +++K K K I+R +
Sbjct: 57 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS-------------- 100
Query: 378 DFQEYLKEVKMDT----QLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E M+T LF++E++ + +EL +++R+K + L P+ EEA+
Sbjct: 101 ------RETGMNTANAAALFNEEDENEND-SEL------DIVRTKRLSLKPMDSEEAV 145
[193][TOP]
>UniRef100_C2ZFA1 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2ZFA1_BACCE
Length = 180
Score = 58.2 bits (139), Expect = 6e-07
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q++EVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRIEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSVKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[194][TOP]
>UniRef100_C2QJQ3 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus cereus R309803 RepID=C2QJQ3_BACCE
Length = 180
Score = 58.2 bits (139), Expect = 6e-07
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K+ K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLGKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DKI +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSVKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDELELVRTKRFDLKPMDVEEAI 142
[195][TOP]
>UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus
faecium RepID=C2HCP0_ENTFC
Length = 183
Score = 58.2 bits (139), Expect = 6e-07
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K FS D + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFS------DAPDATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEE 377
TI L V+R E+ +LYA+IDLV DK+ +++K K K I+R +
Sbjct: 57 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK-INRKS-------------- 100
Query: 378 DFQEYLKEVKMDTQ----LFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+E M+T LF+ EE+ + +EL +++R+K + L P+ EEA+
Sbjct: 101 ------RETGMNTADAAVLFNGEEENEND-SEL------DIVRTKRLSLKPMDSEEAV 145
[196][TOP]
>UniRef100_C0FTS3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans
DSM 16841 RepID=C0FTS3_9FIRM
Length = 176
Score = 58.2 bits (139), Expect = 6e-07
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI I GR + +T+ +K VE+K+ K F+ EV+VTLS K+ QKVE
Sbjct: 1 MRIKITGRNIELTEGLKAAVEDKLNKLEKYFTPDT-EVNVTLSVE--------KERQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI ++ +R E +++Y +IDLV + I +L+K + K +++ ++ +DE
Sbjct: 52 VTI-PMKGSYIRSEQVSSDMYVSIDLVEEVIERQLKKYRTKLVTKQQNAAAVFKQDFLDE 110
Query: 375 EDFQEYLKEVK-MDTQLFD 428
+ + +E+K + T+ FD
Sbjct: 111 KSEDD--EEIKIIRTKKFD 127
[197][TOP]
>UniRef100_B0NJJ3 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
35704 RepID=B0NJJ3_EUBSP
Length = 179
Score = 58.2 bits (139), Expect = 6e-07
Identities = 37/105 (35%), Positives = 61/105 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ II G+ + VT +K VE K+ K F+ E+ VTLS + ++ QK+E
Sbjct: 1 MKFIIIGKNIDVTPGLKEAVENKLGKLERYFTPDT-EIHVTLSVQ--------RERQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI ++ G++R E +++Y +IDLV + I +L+K K K I+R
Sbjct: 52 VTI-PVKGGIIRSEQESSDMYVSIDLVEEVIERQLRKYKNKLIAR 95
[198][TOP]
>UniRef100_B7GL70 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Anoxybacillus
flavithermus WK1 RepID=B7GL70_ANOFW
Length = 182
Score = 57.4 bits (137), Expect(2) = 6e-07
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ YVE+K+ K F T + V V ++ + + K+ K+EVTI
Sbjct: 5 IRGENIEVTQAIREYVEKKIGKLERYFEST-EGVTVHVNLK-----VYNDKQAKIEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG----------P 356
+ V+R E+ +++YAAIDLV DK+ +++K K K ++R A
Sbjct: 58 PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRKHKTK-VNRKMREKEANGVTLTATVPVA 116
Query: 357 KEDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
E+ +EE+F E ++ + + D EE +
Sbjct: 117 TEEHEEEEF-EVVRTKRFSLKPMDSEEAI 144
Score = 20.4 bits (41), Expect(2) = 6e-07
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 553 VGHSFYVCGNDTTRRS 600
+GH+FYV N T R+
Sbjct: 150 LGHNFYVFINAETNRT 165
[199][TOP]
>UniRef100_Q9CHS8 Putative uncharacterized protein ygdA n=1 Tax=Lactococcus lactis
subsp. lactis RepID=Q9CHS8_LACLA
Length = 185
Score = 57.8 bits (138), Expect = 7e-07
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VTDAI+ YVE+K+ K F+ EV ++ + + +K KVE
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDG-HEVTAYVNLK-----VYSEKRAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT+ +N +R ED ++Y++ID V +K+ +++K K + + P A P
Sbjct: 56 VTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAVPTGQAFG 111
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++F +K +++ + ++R+K V L P+ EEA+
Sbjct: 112 DEFAP-----------LEKADEVAEDHVD--------IVRTKHVALKPMDAEEAV 147
[200][TOP]
>UniRef100_B5E3V2 Ribosomal subunit interface protein n=1 Tax=Streptococcus
pneumoniae G54 RepID=B5E3V2_STRP4
Length = 182
Score = 57.8 bits (138), Expect = 7e-07
Identities = 50/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G L VT+AI+ YV K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K
Sbjct: 56 VTI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK------------------- 95
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ K QLF E + I + V+RSK + L P+ +EEA+
Sbjct: 96 --IERKNKNKVATGQLFTD------ALVEDSNIVQSKVVRSKQIDLKPMDLEEAI 142
[201][TOP]
>UniRef100_C7XW84 Sigma 54 modulation protein/SSU ribosomal protein S30P n=1
Tax=Lactobacillus coleohominis 101-4-CHN
RepID=C7XW84_9LACO
Length = 179
Score = 57.8 bits (138), Expect = 7e-07
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + +TDAI+ YVE++++K + F VD T + + K KVEVTI
Sbjct: 6 IRGENVDLTDAIRDYVEKRISK-INKFLED--NVDATAHV---NLKVYKNKTFKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG----PKEDVDE 374
L +R E+ N++YA+IDLV DK+ +++K K K + G P +D E
Sbjct: 59 PLPYLTLRAEETSNDMYASIDLVTDKLERQIRKYKTKVNRKSREKGLKNLEFVPGDDGTE 118
Query: 375 EDFQEYLKEVKMDTQLFDKEE 437
+D + ++ ++ + D EE
Sbjct: 119 DDSLKIVRTKEISLKPMDSEE 139
[202][TOP]
>UniRef100_B7HX18 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B7HX18_BACC7
Length = 180
Score = 57.8 bits (138), Expect = 7e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDQLELVRTKRFDLKPMDVEEAI 142
[203][TOP]
>UniRef100_B7A6F1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermus
aquaticus Y51MC23 RepID=B7A6F1_THEAQ
Length = 186
Score = 57.8 bits (138), Expect = 7e-07
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Frame = +3
Query: 33 GRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTL 212
GR L +TDAI+ YVE+K+++ + + + V LS G H +K K EV + L
Sbjct: 8 GRNLEITDAIRDYVEKKLSR-LDRYQNGELMAKVVLSLAGSP---HVEKRAKAEVQL-DL 62
Query: 213 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI--SRGAWPGRAGPK-------ED 365
G++RVE+ + +LYAAID + D++ +L++ KE+ R + G P+
Sbjct: 63 PGGLLRVEEEDQDLYAAIDRMVDRLEIQLKRYKERRFVGRRHTYQGPPPPEVRDMEALRK 122
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEE 437
+EE+ ++ + + + D EE
Sbjct: 123 PEEEEGPRIVRVKRFEMKPMDPEE 146
[204][TOP]
>UniRef100_Q72XS8 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=Q72XS8_BACC1
Length = 180
Score = 57.8 bits (138), Expect = 7e-07
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDEVEEDELELVRTKRFDLKPMDVEEAI 142
[205][TOP]
>UniRef100_A8U6N5 Ribosomal subunit interface protein n=1 Tax=Carnobacterium sp. AT7
RepID=A8U6N5_9LACT
Length = 180
Score = 57.8 bits (138), Expect = 7e-07
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VT AI+ YVE+KV K F+ DV + + T+ K KVEVTI
Sbjct: 6 VRGENIEVTAAIRSYVEKKVGKVEKYFN------DVPEATAHVNLKTYSDKTAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGP-----KEDVD 371
L V+R E+ +LY ++DLV DK+ +++K K K R P +E
Sbjct: 59 PLPYLVLRAEETSPDLYGSVDLVSDKLERQMRKYKTKINRRTRGSNVVVPPVLPGEEQES 118
Query: 372 EEDFQEYLKEVKMDTQLFDKEE 437
ED ++ ++ + D EE
Sbjct: 119 HEDEVNIVRTKRLSLKPMDSEE 140
[206][TOP]
>UniRef100_A6CQE4 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. SG-1
RepID=A6CQE4_9BACI
Length = 189
Score = 57.8 bits (138), Expect = 7e-07
Identities = 52/171 (30%), Positives = 85/171 (49%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT AI+ +VE K+ K F+ T + DV ++ + + K+ KVEVTI
Sbjct: 6 IRGENIEVTPAIRDHVENKIGKLNRYFNET-PDADVHVNLK-----VYPDKKTKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
+ + V+R E+ ++YAAIDL+ DK+ +++K K K + G PKE Q
Sbjct: 59 PMPHLVLRAEERHEDMYAAIDLIVDKLERQIRKHKTKVNRKMREKG--SPKEFFAA---Q 113
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E L +++ + + EE V+R+K L P+ EEA+
Sbjct: 114 EGLTTSQLNEKARETEEN-------------DEVVRTKQFNLKPMDSEEAI 151
[207][TOP]
>UniRef100_C1CNI0 Ribosome-associated protein Y n=9 Tax=Streptococcus pneumoniae
RepID=C1CNI0_STRZP
Length = 182
Score = 57.8 bits (138), Expect = 7e-07
Identities = 50/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G L VT+AI+ YV K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K
Sbjct: 56 VTI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK------------------- 95
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ K QLF E + I + V+RSK + L P+ +EEA+
Sbjct: 96 --IERKNKNKVATGQLFTD------ALVEDSNIVQSKVVRSKQIDLKPMDLEEAI 142
[208][TOP]
>UniRef100_Q2KU96 Probable sigma(54) modulation protein n=1 Tax=Bordetella avium 197N
RepID=Q2KU96_BORA1
Length = 110
Score = 57.4 bits (137), Expect = 1e-06
Identities = 37/104 (35%), Positives = 57/104 (54%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ + I GR+L VT AI+ YV K+A+ + +F H + + V LS K E
Sbjct: 1 MNLSISGRRLDVTPAIREYVINKLARVLRHFDHVI-DTQVMLSVE--------PLRHKAE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS 326
+T++ LR + E + NLYAAIDL+ DK+ ++ K K+K S
Sbjct: 52 ITMH-LRGKDIHCEAVDENLYAAIDLLVDKLDRQVIKYKDKVQS 94
[209][TOP]
>UniRef100_Q030Z0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Lactococcus lactis subsp. cremoris SK11
RepID=Q030Z0_LACLS
Length = 185
Score = 57.4 bits (137), Expect = 1e-06
Identities = 48/175 (27%), Positives = 86/175 (49%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G + VTDAI+ YVE+K+ K F+ EV ++ + + +K KVE
Sbjct: 2 IKFNIRGENVEVTDAIRDYVEDKIGKLDKYFNDG-HEVTAYVNLK-----VYTEKRAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT+ +N +R ED ++Y++ID V +K+ +++K K + + P A P V
Sbjct: 56 VTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRK---PRNAVPTGQVFG 111
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++F +DT E+ + +++R+K V L P+ EEA+
Sbjct: 112 DEF------APLDTTDEVAEDHV-------------DIVRTKHVALKPMDAEEAV 147
[210][TOP]
>UniRef100_C8NDQ1 Ribosomal subunit interface protein n=1 Tax=Granulicatella adiacens
ATCC 49175 RepID=C8NDQ1_9LACT
Length = 186
Score = 57.4 bits (137), Expect = 1e-06
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+AI+ Y E+K++K F+ DV + + + +K KVEVTI
Sbjct: 12 IRGENIEVTEAIRQYAEKKISKLEKYFT------DVANATAYVNLKVYTEKTAKVEVTI- 64
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG-----RAGPKEDVD 371
L V+R E+ +LY +IDLV DK+ +++K K K + G P+ +
Sbjct: 65 PLPYLVLRAEETSIDLYGSIDLVVDKLERQVRKHKTKINRKSREKGFDIVLPTLPEAPEE 124
Query: 372 EEDFQEYLKEVKMDTQLFDKEE 437
EE E ++ ++D + D EE
Sbjct: 125 EETGLEIVRTKRIDLKPMDSEE 146
[211][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 57.4 bits (137), Expect = 1e-06
Identities = 36/97 (37%), Positives = 58/97 (59%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
L N V+R E+ +LYA+IDL+ DK+ +++K K K
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTK 95
[212][TOP]
>UniRef100_C7G8P2 Ribosomal subunit interface protein n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7G8P2_9FIRM
Length = 176
Score = 57.4 bits (137), Expect = 1e-06
Identities = 39/105 (37%), Positives = 60/105 (57%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI I GR + +TD IK VE+K+ K F+ +V VTLS K+ QKVE
Sbjct: 1 MRIKITGRNIELTDGIKDAVEDKLNKLEKYFTPD-TDVYVTLSVE--------KERQKVE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI ++ +R E N++Y +IDLV + I +L+K + K +++
Sbjct: 52 VTI-PMKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTKLVTK 95
[213][TOP]
>UniRef100_B1IAC2 Ribosome-associated protein Y n=15 Tax=Streptococcus pneumoniae
RepID=B1IAC2_STRPI
Length = 182
Score = 57.4 bits (137), Expect = 1e-06
Identities = 49/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G L VT+AI+ YV K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K
Sbjct: 56 VTI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK------------------- 95
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ K QLF E + + + V+RSK + L P+ +EEA+
Sbjct: 96 --IERKNKNKVATGQLFTD------ALVEDSNVVQSKVVRSKQIDLKPMDLEEAI 142
[214][TOP]
>UniRef100_Q38YD3 30S ribosomal interface protein S30EA n=1 Tax=Lactobacillus sakei
subsp. sakei 23K RepID=Q38YD3_LACSS
Length = 181
Score = 57.0 bits (136), Expect = 1e-06
Identities = 48/171 (28%), Positives = 83/171 (48%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VT+AI+ YVE+K++K F + T +A + + K KVEVTI
Sbjct: 6 VRGENIEVTEAIRSYVEKKISKLEKYFDES-----ATATAHV-NLKVYPDKTAKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQ 386
L V+R E+ ++Y ++DLV DK+ +++K K K ++ + +
Sbjct: 59 PLPYLVLRAEETSPDMYGSVDLVTDKLERQIRKYKTK----------------INRKSRE 102
Query: 387 EYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+K V++ + EE L + P V+R+K V L P+ EEA+
Sbjct: 103 RGIKGVEL---VVSSEETLPEE--------PMQVVRTKRVSLKPMDSEEAI 142
[215][TOP]
>UniRef100_C5D7S1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. WCH70 RepID=C5D7S1_GEOSW
Length = 182
Score = 57.0 bits (136), Expect = 1e-06
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A++ YVE+K+ K F +T +++ V ++ + + K+ K+EVTI
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENT-EDIHVHVNLK-----VYNDKQGKIEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR---------GAWPGRAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + P
Sbjct: 58 PMPQLLLRAEERHDDMYAAIDLVADKLERQIRKHKTKVNRKLRNKETKQVLVTQNNNPPV 117
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
E+ +EE+F E ++ + D EE +
Sbjct: 118 EENEEEEF-EIVRTKHFSLKPMDSEEAI 144
[216][TOP]
>UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV
Length = 188
Score = 57.0 bits (136), Expect = 1e-06
Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
+ GR + V+DA++ YV+EK+ + + ++ + + VTL+ R D G++ +VEV +
Sbjct: 6 LSGRNVEVSDAMRDYVQEKLTR-LDRYNDQITDARVTLTVR--DVRDAGRRN-RVEVQL- 60
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRG----AWPGRAGPKEDVDE 374
+ NG++R E+ +++YAAID D + +L+K K + + + PG + DV+
Sbjct: 61 NVPNGIIRAEEHHSDMYAAIDKASDVLERQLRKFKTRYMKQRHETVPQPGPGPAEADVNA 120
Query: 375 --EDFQEYLKEV 404
+D E++ E+
Sbjct: 121 GLDDVSEFMPEI 132
[217][TOP]
>UniRef100_B8I5T8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulolyticum H10 RepID=B8I5T8_CLOCE
Length = 176
Score = 57.0 bits (136), Expect = 1e-06
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ III G+ + +T+A++ V +KV K + F ++ EV VTLS + + Q VE
Sbjct: 1 MNIIISGKNIEITEALREKVTKKVKK-LEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 195 VTIYTLRNGV-VRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
+TI NGV +R ED ++Y +ID V D I +++K K + R +
Sbjct: 52 ITIPF--NGVTLRAEDQNEDMYTSIDRVIDLIERQIRKNKTRLERR------------LH 97
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ DF K+D F + Q + +F V+RSK + P+ VEEA+
Sbjct: 98 DHDF-------KVDNSKFTYDVQEETEF---------KVVRSKRFAVKPMDVEEAI 137
[218][TOP]
>UniRef100_A4VTG7 Ribosome-associated protein Y (PSrp-1) n=6 Tax=Streptococcus suis
RepID=A4VTG7_STRSY
Length = 192
Score = 57.0 bits (136), Expect = 1e-06
Identities = 35/101 (34%), Positives = 59/101 (58%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G L VT+A++ YVEEKVAK + + + +E++ ++ + + K KVE
Sbjct: 14 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNLK-----VYRDKRAKVE 67
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VTI + +R ED +Y +IDLV DKI ++++ K K
Sbjct: 68 VTI-PVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTK 107
[219][TOP]
>UniRef100_C1XLG1 Sigma 54 modulation protein; SSU ribosomal protein S30P n=1
Tax=Meiothermus ruber DSM 1279 RepID=C1XLG1_MEIRU
Length = 183
Score = 57.0 bits (136), Expect = 1e-06
Identities = 32/99 (32%), Positives = 58/99 (58%)
Frame = +3
Query: 33 GRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTL 212
GR++ +T+A+K Y+++K+A+ F + ++ V A+G K E +V V
Sbjct: 8 GRQIEITEALKNYLDKKMARLDRYFDNNVEAKVVLSMAQGPRIERKAKAEIQVNVP---- 63
Query: 213 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
G+VRVE+A+ ++YAAID D++ +L++ KE+ R
Sbjct: 64 -GGIVRVEEADPDMYAAIDRSIDRLEYQLKRYKERHFQR 101
[220][TOP]
>UniRef100_B9CQX8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus capitis
SK14 RepID=B9CQX8_STACP
Length = 191
Score = 57.0 bits (136), Expect = 1e-06
Identities = 47/175 (26%), Positives = 83/175 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+R I G L +TDAI+ Y+E+K+ K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFN------NVPNAVAHVKVKTYSNSATKIE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L++ +R E+ ++LYA IDL+ K+ +++K K + + ++ D+
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITGKLERQVRKYKTRVNRK--------HRDRGDQ 106
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E F ++E ++ EE + E ++RSK L P+ EEA+
Sbjct: 107 EVFVAEVQEAS-PGEVSGAEESVSDSEIE--------IIRSKQFSLKPMDSEEAV 152
[221][TOP]
>UniRef100_Q03ZJ6 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293 RepID=Q03ZJ6_LEUMM
Length = 181
Score = 56.6 bits (135), Expect = 2e-06
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VTDAI+ YVE+++ K K +V L D KVEVTI
Sbjct: 6 VRGENITVTDAIREYVEKRLTKLNRYIEENAK-ANVNLRTYKSDNSG------KVEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-------PKED 365
L V+R ED +LYAA+D V +K+ +++K K K + G G P+E+
Sbjct: 58 VLPYVVLRAEDTNQDLYAAVDNVSEKVERQIRKYKTKINRKSRETGFKGIDSKGEIPEEE 117
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEE 437
VD+ Q ++ ++D + EE
Sbjct: 118 VDDSALQ-IVRTKQVDLKPMSPEE 140
[222][TOP]
>UniRef100_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Halothermothrix orenii H 168 RepID=B8CYM6_HALOH
Length = 184
Score = 56.6 bits (135), Expect = 2e-06
Identities = 51/174 (29%), Positives = 82/174 (47%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I G+ + VT A+K Y EKV+K F +E +++ G VE
Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVEKG--------RHIVE 52
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VT Y L ++R E+ ++YA+ID V +K+ ++ K K K I+R
Sbjct: 53 VTAY-LNGLILRGEEESQDMYASIDGVLEKLERQVHKYKTK-INRKI------------R 98
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
E QE+ KE K + +EE L + E + ++R+K + P+SVEEA
Sbjct: 99 ERKQEFKKEYKEER----REEILNSEEDE----FKPRIVRTKKFAIKPMSVEEA 144
[223][TOP]
>UniRef100_A5N3B3 Predicted ribosome-associated protein n=2 Tax=Clostridium kluyveri
RepID=A5N3B3_CLOK5
Length = 175
Score = 56.6 bits (135), Expect = 2e-06
Identities = 35/105 (33%), Positives = 62/105 (59%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I + G+ + +TDA+K V +K++K F+ + E VTLS + K Q++E
Sbjct: 1 MKITVNGKNIVLTDALKNAVRKKLSKIDKYFNPDV-EAHVTLSVQ--------KNRQRIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI ++R E+ +++YA+IDLV DK+ +++K K K + R
Sbjct: 52 VTI-PFGGVILRGEEENDDMYASIDLVLDKLEGQIRKQKTKLLKR 95
[224][TOP]
>UniRef100_C9CNP3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Enterococcus casseliflavus EC10 RepID=C9CNP3_ENTCA
Length = 185
Score = 56.6 bits (135), Expect = 2e-06
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K F+ DV + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFN------DVPEATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
TI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 57 TI-PLPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
[225][TOP]
>UniRef100_C9A0V6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Enterococcus gallinarum EG2 RepID=C9A0V6_ENTGA
Length = 185
Score = 56.6 bits (135), Expect = 2e-06
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = +3
Query: 18 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 197
R ++G + VT+AI+ YVE+KV K F+ DV + + + +K KVEV
Sbjct: 3 RYNVRGENIEVTEAIRDYVEKKVGKLERYFN------DVPEATAHVNLKVYTEKTAKVEV 56
Query: 198 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
TI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 57 TI-PLPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
[226][TOP]
>UniRef100_Q5SIS0 Ribosomal subunit interface protein n=2 Tax=Thermus thermophilus
RepID=Q5SIS0_THET8
Length = 186
Score = 56.2 bits (134), Expect = 2e-06
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Frame = +3
Query: 33 GRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTL 212
GR L +TDAI+ YVE+K+A+ + + V LS G H +K+ + E+ + L
Sbjct: 8 GRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGSP---HVEKKARAEIQV-DL 62
Query: 213 RNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI--SRGAWPGRAGPK-------ED 365
G+VRVE+ + +LYAAID D++ ++++ +E+ R ++ G P+
Sbjct: 63 PGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQGPPPPEVRDLEALRK 122
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEE 437
+EE+ ++ + + + D EE
Sbjct: 123 PEEEEGPRIVRVKRFEMKPMDPEE 146
[227][TOP]
>UniRef100_A1K2R5 Probable sigma-54 modulation protein n=1 Tax=Azoarcus sp. BH72
RepID=A1K2R5_AZOSB
Length = 107
Score = 56.2 bits (134), Expect = 2e-06
Identities = 37/97 (38%), Positives = 57/97 (58%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I G + VT AI+ YV K+ + +A+F + + V+V LS K +QK EVT++
Sbjct: 5 ITGHHVEVTPAIREYVVTKLDRVIAHFDN-VTSVNVILSVE--------KLKQKAEVTVH 55
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
+R + VE + NLYAAID + DK+ ++QK K+K
Sbjct: 56 -VRGKDIYVESDDANLYAAIDSMADKLDRQVQKYKQK 91
[228][TOP]
>UniRef100_Q7W3J9 Probable sigma(54) modulation protein n=2 Tax=Bordetella
RepID=Q7W3J9_BORPA
Length = 112
Score = 55.8 bits (133), Expect = 3e-06
Identities = 39/107 (36%), Positives = 56/107 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ + I GR L VT AI+ YV K+A+ + +F H + + V LS K E
Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVI-DTQVMLSVE--------PLRHKAE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGA 335
+T+ LR + E + NLYAAIDL+ DKI ++ K K+K S A
Sbjct: 52 ITM-RLRGKDIHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSHSA 97
[229][TOP]
>UniRef100_A9I0Q2 Putative sigma-54 modulation protein n=1 Tax=Bordetella petrii DSM
12804 RepID=A9I0Q2_BORPD
Length = 112
Score = 55.8 bits (133), Expect = 3e-06
Identities = 39/107 (36%), Positives = 56/107 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ + I GR L VT AI+ YV K+A+ + +F H + + V LS K E
Sbjct: 1 MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVI-DTQVMLSVE--------PLRHKAE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGA 335
+T+ LR + E + NLYAAIDL+ DKI ++ K K+K S A
Sbjct: 52 ITM-RLRGKDIHCEAVDENLYAAIDLLADKIDRQVLKHKDKVQSHTA 97
[230][TOP]
>UniRef100_C6HU22 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Leptospirillum ferrodiazotrophum RepID=C6HU22_9BACT
Length = 174
Score = 55.8 bits (133), Expect = 3e-06
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +3
Query: 21 IIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVT 200
I++ GR + +TDAI+ V EK+ + S + K +V L+ K QK+E+T
Sbjct: 3 IVLTGRHIDLTDAIRNQVNEKLQRVSRLVSDSAK-AEVVLAVE--------KYRQKIEIT 53
Query: 201 IYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAIS 326
++T ++ E ++LY ++DLV DK+ ++ + KEK IS
Sbjct: 54 LHT-HGKMIHAESVTSDLYGSLDLVVDKLERQIHRFKEKFIS 94
[231][TOP]
>UniRef100_C3GRH2 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1 RepID=C3GRH2_BACTU
Length = 180
Score = 55.8 bits (133), Expect = 3e-06
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VT A+K YV +K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVGKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG---------RAGPK 359
+ ++R E+ +++YAAIDLV DK+ +++K K K + G A
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAV 114
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
D EED E ++ + D + D EE +
Sbjct: 115 LDAVEEDELELVRTKRFDLKPMDVEEAI 142
[232][TOP]
>UniRef100_B0MGZ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MGZ9_9FIRM
Length = 176
Score = 55.8 bits (133), Expect = 3e-06
Identities = 45/174 (25%), Positives = 84/174 (48%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+ II G+ + VT+ I+ +EEK+ + + + ++ VTLS + K+ QK+E
Sbjct: 1 MNFIISGKNIEVTEGIRAAIEEKLGRLDKYLTDDI-DIIVTLSVQ--------KERQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI ++ ++R E ++Y +IDLV D + ++++ K + +S+ + G AG K++
Sbjct: 52 VTI-PMKGHIIRAEQDSADMYVSIDLVIDILERQIRRYKTRLMSK-KYEG-AGLKQE--- 105
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEA 536
DK+E + ++RSK + P+ VEEA
Sbjct: 106 ---------------FIDKDEDVDED--------EIRIIRSKKFAIKPMDVEEA 136
[233][TOP]
>UniRef100_Q82KY9 Putative protoporphyrinogen oxidase n=1 Tax=Streptomyces
avermitilis RepID=Q82KY9_STRAW
Length = 474
Score = 55.8 bits (133), Expect = 3e-06
Identities = 61/189 (32%), Positives = 75/189 (39%), Gaps = 32/189 (16%)
Frame = +1
Query: 58 PSSCTWRRRLLRPL-PTSRTRSRRWTSRCPLAAATPAP-----------TARRSRR*R*P 201
PS C R RP P S TR RW S P AA PA T SR R P
Sbjct: 290 PSCCAPRHPPPRPSWPASSTRPWRW-SPSPTAAVGPASPKAAASSCLPSTGAPSRHRRSP 348
Query: 202 -------FTRCATAWCAWRM-------RRTTCTLPSIWFATRSAPSSRRS----RRRPSA 327
TR T WC R R + T P+ W +R+ +RR RR P+A
Sbjct: 349 PRSGAGSRTRTPTCWCCARRSGGTARRRSSAGTTPASW-TSRATTCARRPAWPPRRSPAA 407
Query: 328 AAPGPAA--PAPRRTWMRRTSRSTSRRSRWTLSCLTRRSSCSASSPS*TASTPPTSCAPR 501
+ GP A P T + +T+ S RR++ SAS P+ A TPP S
Sbjct: 408 SPAGPTACRSTPSATTRAWPASATTSPSCPASPSAARRTTASASRPASPARTPPWS---- 463
Query: 502 PWCSTPSAW 528
W +T W
Sbjct: 464 SWAATARGW 472
[234][TOP]
>UniRef100_UPI0001789185 sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789185
Length = 188
Score = 55.5 bits (132), Expect = 4e-06
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANF-SHTLKEVDVTLSA-RGGDTGTHGKKEQK 188
++ I+G+++ VTDA+K YV++K+++ F + E VTLS RG T
Sbjct: 1 MQFTIRGQQIEVTDALKDYVDKKLSRLDKYFDAPPTSEGYVTLSVIRGLHT--------- 51
Query: 189 VEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDV 368
VEVTI L V+R ED +++YA+ID V DK+ +++K K K + + G + +
Sbjct: 52 VEVTI-PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRK---IKQEGGLKTL 107
Query: 369 DEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
E+ +V + +D++E V+R+K + P+ VEEA+
Sbjct: 108 IAENGAAATSQVDAEQVEYDEDEY--------------EVVRTKRFTMKPMDVEEAI 150
[235][TOP]
>UniRef100_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLX7_MOOTA
Length = 190
Score = 55.5 bits (132), Expect = 4e-06
Identities = 31/105 (29%), Positives = 61/105 (58%)
Frame = +3
Query: 3 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE 182
+A + +II+G+ LPVTDA++ Y+ +++ K + + + E+ V L+ + +
Sbjct: 12 SASRMELIIRGKNLPVTDALRQYIAKRLGK-IERYLDGVDEIQVNLAVT--------RDK 62
Query: 183 QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
VEVTI L ++R E+A ++Y ++DLV +K+ ++ K K +
Sbjct: 63 HVVEVTI-PLNGYILRGEEATGDMYGSVDLVVEKLEKQIAKYKTR 106
[236][TOP]
>UniRef100_C4ZI34 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Eubacterium rectale
ATCC 33656 RepID=C4ZI34_EUBR3
Length = 175
Score = 55.5 bits (132), Expect = 4e-06
Identities = 41/125 (32%), Positives = 66/125 (52%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI I G+ + +T+ +K VEEK++K + F +V VTLS K QK+E
Sbjct: 1 MRITISGKNIELTEGLKQAVEEKLSK-LEKFFKPDTDVYVTLSVE--------KDRQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI + V+R E N++Y +IDLV + I +L+K + K ++ P + +
Sbjct: 52 VTI-PAKGHVIRSEQVSNDMYVSIDLVEEVIERQLRKYRTKISAKKYAPA-------IFQ 103
Query: 375 EDFQE 389
+DF E
Sbjct: 104 DDFVE 108
[237][TOP]
>UniRef100_A4XQM1 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Pseudomonas mendocina ymp RepID=A4XQM1_PSEMY
Length = 102
Score = 55.5 bits (132), Expect = 4e-06
Identities = 35/105 (33%), Positives = 58/105 (55%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++ I G +L VTDA++ Y+ EK+ + +F + V VT+ K +QK+E
Sbjct: 1 MQVNISGHQLDVTDALRDYIGEKLGRLERHFDK-ITNVQVTMEVE--------KLKQKIE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
T++ + G V ++YAAIDL+ DK+ +L K KEK + R
Sbjct: 52 ATLH-VAGGEVVANAEHQDMYAAIDLLADKLDRQLIKHKEKQLER 95
[238][TOP]
>UniRef100_C9ACD7 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus casseliflavus RepID=C9ACD7_ENTCA
Length = 180
Score = 55.5 bits (132), Expect = 4e-06
Identities = 37/97 (38%), Positives = 56/97 (57%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VT+AI+ YVE+KV K F+ DV + + + +K KVEVTI
Sbjct: 1 MRGENIEVTEAIRDYVEKKVGKLERYFN------DVPEATAHVNLKVYTEKTAKVEVTI- 53
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 54 PLPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 90
[239][TOP]
>UniRef100_B7DUH5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius LAA1
RepID=B7DUH5_9BACL
Length = 180
Score = 55.5 bits (132), Expect = 4e-06
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTL-KEVDVTLSARGGDTGTHGKKEQKVEVTI 203
+ G + VT A++ YV++K+A+ F K++ VT++ G D +VE+T+
Sbjct: 5 VHGDNIAVTAALQEYVDKKIARLTRYFDREADKQIYVTMAVEGLD--------HRVEMTV 56
Query: 204 YTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEED 380
+ NGV+ R E+ ++YA+IDL DK+ ++ + KEK R G + D +
Sbjct: 57 FV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDA 114
Query: 381 FQEYLKEVKM 410
E E+K+
Sbjct: 115 VAETDDEIKV 124
[240][TOP]
>UniRef100_A6GJX9 Putative type I polyketide synthase n=1 Tax=Plesiocystis pacifica
SIR-1 RepID=A6GJX9_9DELT
Length = 1250
Score = 55.5 bits (132), Expect = 4e-06
Identities = 56/170 (32%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Frame = +2
Query: 125 GGRHAVRSRRRHRHPR------------QEGAEGRGDHLHVAQRRG--ARGGCGEQPVRC 262
G R R+RRR R PR G G V RRG R G R
Sbjct: 1002 GARRPARARRRRRRPRCAASRPARARALASARAGPGGRRRVELRRGLAPRRGSSRDHGRH 1061
Query: 263 HRSGLRQDPR-QAPEDQGEG---HQPRRLARPRRPQGGRG*GGLPGVPQGGQDGHSAV*Q 430
H LR DPR +AP +G G + RR+ RPRRP+ RG P+ Q +A
Sbjct: 1062 HSRALRVDPRPRAPPRRGPGRGLRRARRVPRPRRPRRRRGSRAAGRAPRRPQPRRAA--- 1118
Query: 431 GGAAAAPVRRAEPHLPR--QRHALQ---DRGARPHQRGGGIDALGLWGTR 565
P R P PR +R Q D G RP R A LW R
Sbjct: 1119 -AVPPRPRRDPRPGAPRAARRRGPQRRLDPGPRPRPRRDAAVAADLWRRR 1167
[241][TOP]
>UniRef100_Q898W3 SSU ribosomal protein S30P n=1 Tax=Clostridium tetani
RepID=Q898W3_CLOTE
Length = 176
Score = 55.1 bits (131), Expect = 5e-06
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+RI + G+ + +T+A++ VE+K+ K F + E VTLS K Q +E
Sbjct: 1 MRITVTGKNIEITNALRNVVEKKLEKLDKYFKPDV-EAQVTLSVE--------KNRQIIE 51
Query: 195 VTIYTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISR 329
VTI NGV+ R E+A ++YA+IDLV DK+ +++K K K R
Sbjct: 52 VTIPF--NGVILRGEEANEDMYASIDLVIDKLERQIRKQKTKLQKR 95
[242][TOP]
>UniRef100_C1CBI3 Ribosome-associated protein Y n=1 Tax=Streptococcus pneumoniae
70585 RepID=C1CBI3_STRP7
Length = 182
Score = 55.1 bits (131), Expect = 5e-06
Identities = 48/175 (27%), Positives = 80/175 (45%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++ I+G L VT+AI+ YV K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLK-----VYREKTAKVE 55
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 374
VTI L + +R ED ++Y +IDLV DKI +++K K K
Sbjct: 56 VTI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK------------------- 95
Query: 375 EDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ K QLF E + + + V+R K + L P+ +EEA+
Sbjct: 96 --IERKNKNKVATGQLFTD------ALVEDSNVVQSKVVRLKQIDLKPMDLEEAI 142
[243][TOP]
>UniRef100_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446 RepID=C8WT44_ALIAC
Length = 180
Score = 55.1 bits (131), Expect = 5e-06
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTL-KEVDVTLSARGGDTGTHGKKEQKVEVTI 203
+ G + VT A++ YV++K+A+ F K++ VT++ G D +VE+T+
Sbjct: 5 VHGDNIAVTAALQDYVDKKIARLTRYFDREADKQIYVTMAVEGLD--------HRVEMTV 56
Query: 204 YTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEED 380
+ NGV+ R E+ ++YA+IDL DK+ ++ + KEK R G + D +
Sbjct: 57 FV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLNRRFRARGPRPQLKAADRDA 114
Query: 381 FQEYLKEVKM 410
E E+K+
Sbjct: 115 VAETDDEIKV 124
[244][TOP]
>UniRef100_C7R9H6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Kangiella koreensis DSM 16069 RepID=C7R9H6_KANKD
Length = 95
Score = 55.1 bits (131), Expect = 5e-06
Identities = 36/101 (35%), Positives = 56/101 (55%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
++I + GR L +TDA++ +V+EK AK +F H + V VTLS K Q E
Sbjct: 1 MQINLTGRHLDITDALRDFVDEKFAKLERHFDH-INNVYVTLSVE--------KVRQIAE 51
Query: 195 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 317
T++ + G + ++YAAIDL+ DK+ ++ K KEK
Sbjct: 52 ATLH-VNGGEIFANSESEDMYAAIDLLIDKLDRQVIKHKEK 91
[245][TOP]
>UniRef100_C2KHZ7 Ribosome-associated inhibitor protein Y n=1 Tax=Leuconostoc
mesenteroides subsp. cremoris ATCC 19254
RepID=C2KHZ7_LEUMC
Length = 181
Score = 55.1 bits (131), Expect = 5e-06
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VTD I+ YVE+++ K K +V L D KVEVTI
Sbjct: 6 VRGENITVTDVIREYVEKRLTKLNRYIEENAK-ANVNLRTYKSDNSG------KVEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG-------PKED 365
L V+R ED +LYAA+D V +K+ +++K K K + G G P+E+
Sbjct: 58 VLPYVVLRAEDTNQDLYAAVDNVSEKVERQIRKYKTKINRKSRETGFKGIDSKGEIPEEE 117
Query: 366 VDEEDFQEYLKEVKMDTQLFDKEE 437
VD+ Q ++ ++D + EE
Sbjct: 118 VDDSALQ-IVRTKQVDLKPMSPEE 140
[246][TOP]
>UniRef100_B2GAI6 Ribosomal subunit interface protein n=3 Tax=Lactobacillus fermentum
RepID=B2GAI6_LACF3
Length = 181
Score = 55.1 bits (131), Expect = 5e-06
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
I+G + VTDAI+ YV ++++K + F E + ++ + + + KVEVTI
Sbjct: 6 IRGENVEVTDAIRDYVVKRISK-LERFLEPNVEANAHVNLK-----VYSNRTYKVEVTI- 58
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG------PKEDV 368
L +R E+ N++Y ++DLV DK+ +++K K K + G P E+V
Sbjct: 59 PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSREKGYKNLEFVDTPSEEV 118
Query: 369 DEEDFQEYLKEVKMDTQLFDKEE 437
+ D + ++ ++ + D EE
Sbjct: 119 EASDSLKIVRTKQIPLKPMDSEE 141
[247][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YF17_DICT6
Length = 179
Score = 54.7 bits (130), Expect = 6e-06
Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 1/169 (0%)
Frame = +3
Query: 36 RKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLR 215
+ + +TD ++ Y E+K+++ ++ F ++ ++V S + G K +VEVTI
Sbjct: 8 KNVNITDNLQQYAEKKLSR-LSRFFDNIENIEVLFSE---EDWKDGSKRHRVEVTIKA-- 61
Query: 216 NG-VVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEY 392
NG +++ +A + +IDLV DK+ +L+++KEK + +G RA E
Sbjct: 62 NGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGR---RA------------ES 106
Query: 393 LKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++E+ + ++ +K + V++ K +L P+ VEEA+
Sbjct: 107 IREILAEKEVEEKPQ----------------VVKVKRFLLKPMDVEEAI 139
[248][TOP]
>UniRef100_C9RVC1 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Geobacillus RepID=C9RVC1_9BACI
Length = 182
Score = 54.7 bits (130), Expect = 6e-06
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 206
++G + VT A++ YVE+K+ K F T +V+V ++ + + G + K+EVTI
Sbjct: 5 VRGENIEVTPALREYVEKKIGKLERYFDRT-DDVNVHVNLKVYNDG-----QGKIEVTI- 57
Query: 207 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKA---------ISRGAWPGRAGPK 359
+ + ++R E+ ++YAAIDLV DK+ +++K K K ++ A P G
Sbjct: 58 PIPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKEAKLAAPVSIGAS 117
Query: 360 EDVDEEDFQEYLKEVKMDTQLFDKEEQL 443
+EE+F E ++ + D EE +
Sbjct: 118 AAENEEEF-EIVRTKHFSLKPMDSEEAI 144
[249][TOP]
>UniRef100_UPI0001694CB6 ribosomal subunit interface protein n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694CB6
Length = 182
Score = 54.3 bits (129), Expect = 8e-06
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 1/172 (0%)
Frame = +3
Query: 27 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTL-KEVDVTLSARGGDTGTHGKKEQKVEVTI 203
I+G + +T+A+K YV++K++K F L E VTLS K VEVTI
Sbjct: 5 IRGVNIELTEALKDYVDKKISKLDKYFEAPLASEASVTLSVI--------KDMHTVEVTI 56
Query: 204 YTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF 383
+ ++R E +++YA+IDLV DK+ +++K K K R + G K D+
Sbjct: 57 -PISGALLRAEVKNDDMYASIDLVVDKLERQIRKYKTKMNRR---IRQEGGKRDL----- 107
Query: 384 QEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
++ E ++EE ++R+K L P+ VEEA+
Sbjct: 108 --FVMEPSSVANTVEEEEY--------------ELVRTKRFTLKPMDVEEAI 143
[250][TOP]
>UniRef100_Q97F93 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Clostridium
acetobutylicum RepID=Q97F93_CLOAB
Length = 174
Score = 54.3 bits (129), Expect = 8e-06
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 1/176 (0%)
Frame = +3
Query: 15 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 194
+++I+ G+ L VT+ ++ VE++++K F + E VTLS K Q VE
Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISKLEKYFKPEV-EAHVTLSVE--------KNRQIVE 51
Query: 195 VTIYTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVD 371
VTI NGV+ R E+ N++YA+ID+V DK+ +++K K K ++
Sbjct: 52 VTIPF--NGVILRGEETNNDMYASIDIVGDKLERQVRKQKTK----------------LE 93
Query: 372 EEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKTVVLDPISVEEAL 539
+ + LK + + KEEQ ++++K + P+S EEA+
Sbjct: 94 RRKYSDSLKFQNIPD--YHKEEQ------------EPEIVKTKRFAIKPMSEEEAV 135