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[1][TOP] >UniRef100_A8I4N7 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I4N7_CHLRE Length = 109 Score = 238 bits (608), Expect = 2e-61 Identities = 109/109 (100%), Positives = 109/109 (100%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA Sbjct: 1 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 60 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG Sbjct: 61 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 109 [2][TOP] >UniRef100_A9SIZ2 DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SIZ2_PHYPA Length = 110 Score = 157 bits (398), Expect = 4e-37 Identities = 70/107 (65%), Positives = 82/107 (76%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTCAN+LLVE + LRYFC CPYVY +D+KISK L +K+VDDVLGGEDAWKN Sbjct: 3 FCPTCANLLLVENPSMGRPLRYFCPTCPYVYVVDRKISKKLKLKKKEVDDVLGGEDAWKN 62 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 V +T TCP CSY QAYFM+IQ RSADEP T F+KC + C HRW+E Sbjct: 63 VDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKE 109 [3][TOP] >UniRef100_C1MJC6 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MJC6_9CHLO Length = 113 Score = 149 bits (377), Expect = 1e-34 Identities = 67/113 (59%), Positives = 84/113 (74%), Gaps = 4/113 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELT----EYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 M+T+CP+CANMLLV + S L+ CQ CPY Y++ K + P+ RK+VDDVLG Sbjct: 1 MLTFCPSCANMLLVTTNAAGADASPCLKLICQTCPYAYDVTKTLRDDVPVTRKEVDDVLG 60 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 G+DAWKNV KT ATCPKC + QAYFM+IQ RSADEP + FFKCV+C ++WREG Sbjct: 61 GDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKCVKCGNQWREG 113 [4][TOP] >UniRef100_C1DZH6 DNA-directed RNA polymerase subunit n=1 Tax=Micromonas sp. RCC299 RepID=C1DZH6_9CHLO Length = 109 Score = 146 bits (369), Expect = 9e-34 Identities = 65/109 (59%), Positives = 82/109 (75%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+++CP CANMLLV+ L+ +CQ CPY + I + I +ARKQVDDVLGG+DA Sbjct: 1 MLSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITETIRDPIKIARKQVDDVLGGDDA 60 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 WKNV KT ATCPKC + QAYFM+IQ RSADEP + F+KC +CA++WREG Sbjct: 61 WKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWREG 109 [5][TOP] >UniRef100_A7SWZ1 DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis RepID=A7SWZ1_NEMVE Length = 108 Score = 137 bits (344), Expect = 7e-31 Identities = 59/108 (54%), Positives = 78/108 (72%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+CAN+L+VE R+ CQ CPYV+NI KK+S K+VDDVLGG+ A Sbjct: 1 MLLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIAKKVSSKKYPKLKEVDDVLGGKSA 60 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W+NV T+ CPKC +++AYFM+IQTRSADEP T F+KC C +RW+E Sbjct: 61 WENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108 [6][TOP] >UniRef100_Q8JH46 DNA-directed RNA polymerase subunit n=1 Tax=Sphoeroides nephelus RepID=Q8JH46_9PERC Length = 108 Score = 134 bits (337), Expect = 5e-30 Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K +R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T TCPKC + +AYFM+IQTRSADEP T F+KC QC HRWRE Sbjct: 59 WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108 [7][TOP] >UniRef100_UPI000186DC84 DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DC84 Length = 108 Score = 134 bits (336), Expect = 6e-30 Identities = 61/110 (55%), Positives = 79/110 (71%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTCAN+L VE E + LR+ C CPY++NI +K+S K+VDDVLGG A Sbjct: 1 MLLFCPTCANVLGVE--EGERSLRFACHTCPYIFNIARKVSSRYYPRLKEVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T+ CPKCS+ +AYFM+IQTRSADEP T F+KC +C HRWR+ Sbjct: 59 WENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108 [8][TOP] >UniRef100_Q5FVV0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus (Silurana) tropicalis RepID=Q5FVV0_XENTR Length = 108 Score = 134 bits (336), Expect = 6e-30 Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+N+++K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNVNRKVTSRKYPKLKEVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T TCPKC + +AYFM+IQTRSADEP T F+KC +QC HRWR+ Sbjct: 59 WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108 [9][TOP] >UniRef100_Q01CB3 RNA polymerase III subunit C11 (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01CB3_OSTTA Length = 117 Score = 134 bits (336), Expect = 6e-30 Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 8/117 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEY--------SKELRYFCQCCPYVYNIDKKISKMAPLARKQVD 211 M+T+CPTCAN+LL+E +R C CPY Y++ + + RK VD Sbjct: 1 MLTFCPTCANLLLIERESAVGTSSSGGGGGVRLRCAACPYAYDVVDGVRQRVKTTRKTVD 60 Query: 212 DVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 DVLGG++AW+NV KT TCP+C + +AYFM+IQ RSADEP ++F+KC +CAH+WREG Sbjct: 61 DVLGGDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCCECAHQWREG 117 [10][TOP] >UniRef100_Q6P7G0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus laevis RepID=Q6P7G0_XENLA Length = 108 Score = 133 bits (334), Expect = 1e-29 Identities = 61/110 (55%), Positives = 79/110 (71%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+NI++K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNINRKVTSRKYPKLKEVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T TCPKC++ +AYFM+IQTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGHRWRD 108 [11][TOP] >UniRef100_Q4RHC2 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RHC2_TETNG Length = 108 Score = 133 bits (334), Expect = 1e-29 Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K +R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T TCPKC + +AYFM+IQTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108 [12][TOP] >UniRef100_A4RUS3 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RUS3_OSTLU Length = 120 Score = 132 bits (332), Expect = 2e-29 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 11/120 (9%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKE-----------LRYFCQCCPYVYNIDKKISKMAPLARK 202 M+T+CPTCAN+LL+E +R C CPY Y++ + + +K Sbjct: 1 MLTFCPTCANLLLLERGAADASTSGAGAGVGGAVRLRCASCPYAYDVVDGVKQRVDARKK 60 Query: 203 QVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 VDDVLGG+DAW+NV KT ATCP C++ +AYFM+IQ RSADEP ++F+KCV+CA +WREG Sbjct: 61 TVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWREG 120 [13][TOP] >UniRef100_C3Y255 DNA-directed RNA polymerase subunit n=1 Tax=Branchiostoma floridae RepID=C3Y255_BRAFL Length = 108 Score = 132 bits (331), Expect = 2e-29 Identities = 61/110 (55%), Positives = 77/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTCAN+L+ E E K R+ CQ CPY+YNI KIS K+VDDVLGG +A Sbjct: 1 MLLFCPTCANLLVAE--EGEKCYRFGCQTCPYIYNITHKISFKKYPKLKEVDDVLGGPEA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W NV T+ CPKC + +AYFM+IQTRSADEP T F+KC +C HRW++ Sbjct: 59 WANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGHRWKD 108 [14][TOP] >UniRef100_UPI0000018387 UPI0000018387 related cluster n=1 Tax=Takifugu rubripes RepID=UPI0000018387 Length = 108 Score = 131 bits (329), Expect = 4e-29 Identities = 59/110 (53%), Positives = 78/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E + +R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQRCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T TCPKC + +A+FM+IQTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108 [15][TOP] >UniRef100_C3KJD5 DNA-directed RNA polymerase subunit n=1 Tax=Anoplopoma fimbria RepID=C3KJD5_9PERC Length = 108 Score = 130 bits (328), Expect = 5e-29 Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K +R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T TCPKC + +AYFM+IQTRSADEP T F+KC C HRWR+ Sbjct: 59 WENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGHRWRD 108 [16][TOP] >UniRef100_B3S471 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S471_TRIAD Length = 106 Score = 130 bits (328), Expect = 5e-29 Identities = 56/108 (51%), Positives = 77/108 (71%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP CAN L +E + + L + C CPY+Y + K I+ KQVDD+LGG+ A Sbjct: 1 MLFFCPNCANALYME--KQGECLVFLCHTCPYLYKVTKTIASRNYPKLKQVDDILGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W+NV T+ATCPKC ++QA+FM+IQTRSADEP T+F+KC C HRW++ Sbjct: 59 WENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCCSCGHRWKD 106 [17][TOP] >UniRef100_Q6DGU0 DNA-directed RNA polymerase subunit n=1 Tax=Danio rerio RepID=Q6DGU0_DANRE Length = 108 Score = 130 bits (327), Expect = 7e-29 Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQRCFRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM+IQTRSADEP T F+KC +QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108 [18][TOP] >UniRef100_C1BS50 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Lepeophtheirus salmonis RepID=C1BS50_9MAXI Length = 108 Score = 129 bits (324), Expect = 1e-28 Identities = 56/108 (51%), Positives = 72/108 (66%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L V +R+ C+ CPY N+ ++S K+VDDVLGG A Sbjct: 1 MLMFCPNCGNILGVVEGVTDSCMRFACETCPYKRNVVSRLSDRVYPKLKEVDDVLGGSAA 60 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W+NV T+ TCP C +H+AYFM+IQTRSADEP T F+KCV C HRWRE Sbjct: 61 WENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVSCGHRWRE 108 [19][TOP] >UniRef100_C1BZC8 DNA-directed RNA polymerase subunit n=1 Tax=Esox lucius RepID=C1BZC8_ESOLU Length = 108 Score = 128 bits (322), Expect = 3e-28 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T CPKC + +AYFM+IQTRSADEP T F+KC +C HRWR+ Sbjct: 59 WENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGHRWRD 108 [20][TOP] >UniRef100_UPI00015B545C PREDICTED: similar to MGC68582 protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B545C Length = 108 Score = 128 bits (321), Expect = 3e-28 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L VE E + +R+ C CPY+ NI++++S K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLHVE--EGTVSMRFACNTCPYISNINRRVSSRTYPKLKEVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T+ CPKCS +AYFM+IQTRSADEP T F+KC QC H WRE Sbjct: 59 WENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCNPQCGHNWRE 108 [21][TOP] >UniRef100_B7P467 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P467_IXOSC Length = 109 Score = 128 bits (321), Expect = 3e-28 Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 2/111 (1%) Frame = +2 Query: 53 KMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED 232 KM+ +CPTCAN+L+VE + + R+ C CPYV+NI K+S K VDDVLGG Sbjct: 1 KMLLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDVLGGAA 58 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 AW+NV T+ CPKC + +AYFM+IQTRSADEP T F+KC C H+WRE Sbjct: 59 AWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109 [22][TOP] >UniRef100_Q1RPU6 DNA-directed RNA polymerase subunit n=1 Tax=Ciona intestinalis RepID=Q1RPU6_CIOIN Length = 108 Score = 127 bits (320), Expect = 4e-28 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L VE E ++ R+ C CPYV+NI +KIS K VDDVLGG A Sbjct: 1 MLLFCPTCGNLLTVE--EGNQCYRFACPTCPYVHNITQKISSKKFPKLKAVDDVLGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W+NV T+ CPKC + +AYFM+IQTRSADEP T+F+KC C H+WRE Sbjct: 59 WENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108 [23][TOP] >UniRef100_UPI0000E49DF0 PREDICTED: similar to POLR3K n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49DF0 Length = 107 Score = 127 bits (318), Expect = 7e-28 Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTCAN+L+VE E K LR+ C CPYV+N+ +K++ K+VDDVLGG AW+N Sbjct: 3 FCPTCANVLVVE--EGPKCLRFACNTCPYVHNVTRKLANRKYPRLKEVDDVLGGAAAWEN 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 V T CPKC + +AYFM++QTRSADEP T F+KC QC HRW E Sbjct: 61 VDSTAEKCPKCEHPRAYFMQMQTRSADEPMTTFYKCCYQQCGHRWNE 107 [24][TOP] >UniRef100_B5XDQ5 DNA-directed RNA polymerase subunit n=2 Tax=Salmoninae RepID=B5XDQ5_SALSA Length = 108 Score = 127 bits (318), Expect = 7e-28 Identities = 58/110 (52%), Positives = 76/110 (69%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +A+FM+IQTRSADEP T F+KC +C HRWR+ Sbjct: 59 WENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 108 [25][TOP] >UniRef100_Q17L91 DNA-directed RNA polymerase subunit n=1 Tax=Aedes aegypti RepID=Q17L91_AEDAE Length = 108 Score = 125 bits (315), Expect = 2e-27 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+LLVE E + LR+ C CPY+ I +KIS K+VD V+GG A Sbjct: 1 MLMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKLKEVDHVMGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W+NV TDA CP C++++AYFM++QTRSADEP T F+KC C H WRE Sbjct: 59 WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNPTCGHNWRE 108 [26][TOP] >UniRef100_B0X903 DNA-directed RNA polymerase subunit n=1 Tax=Culex quinquefasciatus RepID=B0X903_CULQU Length = 108 Score = 125 bits (314), Expect = 2e-27 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+LLVE E + LR+ C CPY+ I +KIS K+VD V+GG A Sbjct: 1 MLMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKLKEVDHVMGGSAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W+NV TDA CP C++++AYFM++QTRSADEP T F+KC C H WR+ Sbjct: 59 WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANPVCGHNWRD 108 [27][TOP] >UniRef100_Q6WCQ3 DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis RepID=Q6WCQ3_IXOSC Length = 108 Score = 125 bits (313), Expect = 3e-27 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTCAN+L+VE + + R+ C CPYV+NI K+S K VDDVLGG A Sbjct: 1 MLLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W+NV T+ CPKC + +AYFM+IQTRSADEP T F+KC C H+WR+ Sbjct: 59 WENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108 [28][TOP] >UniRef100_Q5KEF1 RNA polymerase III smallest subunit, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KEF1_CRYNE Length = 132 Score = 124 bits (311), Expect = 5e-27 Identities = 55/105 (52%), Positives = 72/105 (68%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP CAN L + E S + C CPY + I+++IS L RK+VDDVLGG++AW N Sbjct: 3 FCPYCANSLTIGDREDSTDK--VCPTCPYQFIIERQISMRTHLKRKEVDDVLGGKEAWAN 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V KTD CPKC + +AYF ++Q RSADEP T F+KC +C H+WRE Sbjct: 61 VDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105 [29][TOP] >UniRef100_Q55P07 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q55P07_CRYNE Length = 132 Score = 124 bits (311), Expect = 5e-27 Identities = 55/105 (52%), Positives = 72/105 (68%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP CAN L + E S + C CPY + I+++IS L RK+VDDVLGG++AW N Sbjct: 3 FCPYCANSLTIGDREDSTDK--VCPTCPYQFIIERQISMRTHLKRKEVDDVLGGKEAWAN 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V KTD CPKC + +AYF ++Q RSADEP T F+KC +C H+WRE Sbjct: 61 VDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105 [30][TOP] >UniRef100_B5X6F8 DNA-directed RNA polymerase subunit n=1 Tax=Salmo salar RepID=B5X6F8_SALSA Length = 108 Score = 124 bits (310), Expect = 6e-27 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +A+FM+IQTRSADE T F+KC +C HRWR+ Sbjct: 59 WENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGHRWRD 108 [31][TOP] >UniRef100_B3RF23 DNA-directed RNA polymerase subunit n=1 Tax=Sorex araneus RepID=B3RF23_SORAR Length = 108 Score = 124 bits (310), Expect = 6e-27 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPSCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108 [32][TOP] >UniRef100_UPI00005A1245 PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypeptide (RNA polymerase III C11 subunit) (HsC11p) (hRPC11) n=1 Tax=Canis lupus familiaris RepID=UPI00005A1245 Length = 132 Score = 123 bits (309), Expect = 8e-27 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 25 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 82 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T +CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 83 WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 132 [33][TOP] >UniRef100_Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Homo sapiens RepID=RPC10_HUMAN Length = 108 Score = 123 bits (309), Expect = 8e-27 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T +CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108 [34][TOP] >UniRef100_C1FXX2 DNA-directed RNA polymerase subunit n=1 Tax=Dasypus novemcinctus RepID=C1FXX2_DASNO Length = 108 Score = 122 bits (307), Expect = 1e-26 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTSRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108 [35][TOP] >UniRef100_A8NJC4 DNA-directed RNA polymerase subunit n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NJC4_COPC7 Length = 106 Score = 122 bits (307), Expect = 1e-26 Identities = 50/105 (47%), Positives = 77/105 (73%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTCAN+L++ ++ + ++ C CPY + I K+++ + KQVDDVLGG++ WK+ Sbjct: 3 FCPTCANILVI--SQETGVNKWACNTCPYEFPITKQMTSRTRMQLKQVDDVLGGDEMWKH 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +T A+CPKC++ +AYF ++Q RSADEP T F++CV CAH+WRE Sbjct: 61 ADQTQASCPKCNFDKAYFYQLQIRSADEPMTTFYRCVNCAHQWRE 105 [36][TOP] >UniRef100_Q9CQZ7 DNA-directed RNA polymerase III subunit RPC10 n=7 Tax=Eutheria RepID=RPC10_MOUSE Length = 108 Score = 122 bits (307), Expect = 1e-26 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108 [37][TOP] >UniRef100_UPI00005828F8 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit K). n=1 Tax=Bos taurus RepID=UPI00005828F8 Length = 108 Score = 122 bits (306), Expect = 2e-26 Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+N+ +K++ K+VDDVLGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108 [38][TOP] >UniRef100_B8K127 DNA-directed RNA polymerase subunit n=1 Tax=Oryctolagus cuniculus RepID=B8K127_RABIT Length = 108 Score = 122 bits (306), Expect = 2e-26 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108 [39][TOP] >UniRef100_B4ME99 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila virilis RepID=B4ME99_DROVI Length = 108 Score = 121 bits (304), Expect = 3e-26 Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CP++ I +KIS K+VD VLGG A Sbjct: 1 MLFFCPSCGNILIIE--EDTSSHRFTCNTCPFISKIKRKISTKTYPRLKEVDHVLGGVAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC QC H WR+ Sbjct: 59 WENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108 [40][TOP] >UniRef100_B5G0B7 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata RepID=B5G0B7_TAEGU Length = 108 Score = 120 bits (302), Expect = 5e-26 Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L+ E E + R+ C CPYV N+ +K++ K+VDDVLGG A Sbjct: 1 MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVTSRKYPRLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T CPKC + +AYFM+IQTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRWRD 108 [41][TOP] >UniRef100_B4MPJ2 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila willistoni RepID=B4MPJ2_DROWI Length = 108 Score = 120 bits (302), Expect = 5e-26 Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E S L C CPYV I KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNLLIIEEDTNSHHLS--CHTCPYVSKIRGKISTKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+++AYFM+IQTRSADEP T F+KC QC H WR+ Sbjct: 59 WENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108 [42][TOP] >UniRef100_B4KR43 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila mojavensis RepID=B4KR43_DROMO Length = 108 Score = 120 bits (302), Expect = 5e-26 Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CP++ I +KI+ K+VD VLGG A Sbjct: 1 MLFFCPSCGNILIIE--EDTSSHRFTCNTCPFISKIKRKITTKTYPRLKEVDHVLGGVAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC QC H WR+ Sbjct: 59 WENVDSTDAECPSCSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108 [43][TOP] >UniRef100_Q8BU05 DNA-directed RNA polymerase subunit n=1 Tax=Mus musculus RepID=Q8BU05_MOUSE Length = 107 Score = 120 bits (301), Expect = 7e-26 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG AW+N Sbjct: 3 FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWEN 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 V T CPKC + +AYFM++QTRSADEP T F+KC QC HRWR+ Sbjct: 61 VDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 107 [44][TOP] >UniRef100_B0D7I7 DNA-directed RNA polymerase subunit n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7I7_LACBS Length = 106 Score = 120 bits (300), Expect = 9e-26 Identities = 52/106 (49%), Positives = 74/106 (69%), Gaps = 1/106 (0%) Frame = +2 Query: 65 YCPTCANMLLVEL-TEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241 +CPTCAN+L++ T Y+K + C C Y + I K+++ L RKQVDDVLGG++ W Sbjct: 3 FCPTCANLLVISSETGYNK---WACNTCAYEFPISKQMTSRTRLVRKQVDDVLGGDEMWA 59 Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + +T A+C KC++ QAYF ++Q RSADEP T F++C CAH+WRE Sbjct: 60 HADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCTSCAHQWRE 105 [45][TOP] >UniRef100_B4PA35 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila yakuba RepID=B4PA35_DROYA Length = 108 Score = 119 bits (299), Expect = 1e-25 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISAKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC +C H WR+ Sbjct: 59 WENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108 [46][TOP] >UniRef100_B5KFS3 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata RepID=B5KFS3_TAEGU Length = 108 Score = 119 bits (297), Expect = 2e-25 Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L+ E E + R+ C CPYV N+ +K++ K+VDDVLGG A Sbjct: 1 MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVTSRKYPRLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV T CPKC + +AYFM+ QTRSADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRWRD 108 [47][TOP] >UniRef100_B3NJW4 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila erecta RepID=B3NJW4_DROER Length = 108 Score = 118 bits (296), Expect = 3e-25 Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISAKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+ +AYFM++QTRSADEP T F+KC +C H WR+ Sbjct: 59 WENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKCCNHECNHTWRD 108 [48][TOP] >UniRef100_A1ZBX4 DNA-directed RNA polymerase subunit n=2 Tax=melanogaster subgroup RepID=A1ZBX4_DROME Length = 108 Score = 118 bits (295), Expect = 3e-25 Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISTKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP C + +AYFM+IQTRSADEP T F+KC +C H WR+ Sbjct: 59 WENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108 [49][TOP] >UniRef100_Q6BMC8 DNA-directed RNA polymerase subunit n=1 Tax=Debaryomyces hansenii RepID=Q6BMC8_DEBHA Length = 111 Score = 117 bits (294), Expect = 4e-25 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP CANML++ + R+FC CPY + ID ++ L+RK+VDDVLGGE Sbjct: 1 MLSFCPYCANMLIMAQKDDGCN-RFFCSTCPYEFKIDGFQMYDRKKLSRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP C +AYF ++Q RSADEP T F+KCV+C+H+WRE Sbjct: 60 AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCSHQWRE 110 [50][TOP] >UniRef100_C5M563 DNA-directed RNA polymerase subunit n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M563_CANTT Length = 111 Score = 117 bits (294), Expect = 4e-25 Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+T+CP C+NMLL+ T R++C CPYV+ I ++ L RK+VDDVLGGE Sbjct: 1 MLTFCPNCSNMLLIN-TGNDGLNRFYCSTCPYVFKISGLQMYDRKKLHRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T A CP C +AYF ++Q RSADEP T F+KCV+C HRW+E Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110 [51][TOP] >UniRef100_Q2M2S7 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Bos taurus RepID=RPC10_BOVIN Length = 108 Score = 117 bits (294), Expect = 4e-25 Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N L+VE E + R+ C CPYV+N+ +K++ K+VDD LGG A Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDELGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 W+NV T CPKC + +AYFM++QTR ADEP T F+KC QC HRWR+ Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108 [52][TOP] >UniRef100_UPI000151ABB6 hypothetical protein PGUG_01395 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151ABB6 Length = 111 Score = 117 bits (293), Expect = 6e-25 Identities = 57/111 (51%), Positives = 77/111 (69%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C+NMLLV L+E R +C CPY + I+ ++ L+RKQVDDVLGG+ Sbjct: 1 MLSFCPYCSNMLLVGLSEDGCN-RLYCTTCPYEFKINGLQMYDRKNLSRKQVDDVLGGDG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW+NV +T A CP C +AYF ++Q RSADEP T F+KCV+C H+WRE Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWRE 110 [53][TOP] >UniRef100_C4YKX9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans RepID=C4YKX9_CANAL Length = 111 Score = 117 bits (293), Expect = 6e-25 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+T+CP C+NMLL+ + R++C CPY + I+ ++ L RKQVDDVLGGE Sbjct: 1 MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLNRKQVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T A CP C +AYF ++Q RSADEP T F+KCV+C HRW+E Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110 [54][TOP] >UniRef100_UPI0000D554AC PREDICTED: similar to POLR3K n=1 Tax=Tribolium castaneum RepID=UPI0000D554AC Length = 108 Score = 117 bits (292), Expect = 8e-25 Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L + T L + C+ CP + I KIS K VDDVLGGEDA Sbjct: 1 MVVFCPFCGNLLFAQQT--CGRLGFACRICPVSFPIRGKISNRTYFQVKSVDDVLGGEDA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 WKN T TCP+CS+ AYF+++QTRSADEP T F++C +CAH WRE Sbjct: 59 WKNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCNPECAHNWRE 108 [55][TOP] >UniRef100_UPI00003BE0F5 hypothetical protein DEHA0F07216g n=1 Tax=Debaryomyces hansenii CBS767 RepID=UPI00003BE0F5 Length = 111 Score = 117 bits (292), Expect = 8e-25 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP CANML++ + R+FC CPY + ID ++ L+RK+VDDVLGGE Sbjct: 1 MLSFCPYCANMLIMAQKDDGCN-RFFCLTCPYEFKIDGFQMYDRKKLSRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP C +AYF ++Q RSADEP T F+KCV+C+H+WRE Sbjct: 60 AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCSHQWRE 110 [56][TOP] >UniRef100_Q28ZP6 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q28ZP6_DROPS Length = 335 Score = 116 bits (291), Expect = 1e-24 Identities = 57/118 (48%), Positives = 75/118 (63%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTDSHRFTCNTCPYISKITRKISTKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG*GVPAASTP 409 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC C H + V TP Sbjct: 59 WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQHQTVEKTKTP 114 [57][TOP] >UniRef100_B4J958 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi RepID=B4J958_DROGR Length = 108 Score = 116 bits (291), Expect = 1e-24 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CP++ I +KI+ K+VD VLGG A Sbjct: 1 MLFFCPSCGNILIIE--EDTSSHRFTCHTCPFISKIKRKITTKTFPRLKEVDHVLGGIAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC QC + WR+ Sbjct: 59 WENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGNTWRD 108 [58][TOP] >UniRef100_B4GGZ5 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila persimilis RepID=B4GGZ5_DROPE Length = 335 Score = 116 bits (291), Expect = 1e-24 Identities = 57/118 (48%), Positives = 75/118 (63%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTDSHRFTCNTCPYISKITRKISTKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG*GVPAASTP 409 W+NV TDA CP CS+ +AYFM+IQTRSADEP T F+KC C H + V TP Sbjct: 59 WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQHQTVEKTKTP 114 [59][TOP] >UniRef100_A8BG20 DNA-directed RNA polymerase subunit n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BG20_GIALA Length = 105 Score = 116 bits (291), Expect = 1e-24 Identities = 48/105 (45%), Positives = 73/105 (69%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C N+LL+EL S +++++C+ C Y Y + +IS+ L RK VD VLGGE AW+ Sbjct: 3 FCPCCGNLLLIEL---SGDVQFYCKTCAYRYTLSGQISRSLTLTRKSVDPVLGGETAWQG 59 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 KT CP C++ A+++++Q RS+DEP + F++C QCAH+WRE Sbjct: 60 ADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104 [60][TOP] >UniRef100_Q5A5N9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans RepID=Q5A5N9_CANAL Length = 111 Score = 116 bits (290), Expect = 1e-24 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+T+CP C+NMLL+ + R++C CPY + I+ ++ L RK+VDDVLGGE Sbjct: 1 MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLNRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T A CP C +AYF ++Q RSADEP T F+KCV+C HRW+E Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110 [61][TOP] >UniRef100_B9WCW5 DNA-directed RNA polymerase subunit n=1 Tax=Candida dubliniensis CD36 RepID=B9WCW5_CANDC Length = 111 Score = 116 bits (290), Expect = 1e-24 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+T+CP C+NMLL+ + R++C CPY + I+ ++ L RK+VDDVLGGE Sbjct: 1 MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLHRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T A CP C +AYF ++Q RSADEP T F+KCV+C HRW+E Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110 [62][TOP] >UniRef100_Q9N4B7 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis elegans RepID=Q9N4B7_CAEEL Length = 108 Score = 115 bits (288), Expect = 2e-24 Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+T+CP C +L +E E +R+ C CPYV + + ++ K +DDVLGG A Sbjct: 1 MLTFCPECGCVLQIESGEQC--MRFSCPACPYVCPVTQTVTSRIYPKLKDIDDVLGGPGA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W N TD TCP CS+ +AYFM++QTRSADEP+T+F++C CAHRW++ Sbjct: 59 WANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108 [63][TOP] >UniRef100_A5DDP4 DNA-directed RNA polymerase subunit n=1 Tax=Pichia guilliermondii RepID=A5DDP4_PICGU Length = 111 Score = 115 bits (287), Expect = 3e-24 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C+NMLLV +E R +C CPY + I+ ++ L+RKQVDDVLGG+ Sbjct: 1 MLSFCPYCSNMLLVGSSEDGCN-RLYCTTCPYEFKINGLQMYDRKNLSRKQVDDVLGGDG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW+NV +T A CP C +AYF ++Q RSADEP T F+KCV+C H+WRE Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWRE 110 [64][TOP] >UniRef100_C6LXC5 DNA-directed RNA polymerase subunit n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LXC5_GIALA Length = 105 Score = 114 bits (286), Expect = 4e-24 Identities = 47/105 (44%), Positives = 73/105 (69%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C N+LL+EL + +++++C+ C Y Y + +IS+ L RK VD VLGGE AW+ Sbjct: 3 FCPCCGNLLLIEL---AGDVQFYCKTCSYRYTLSGQISRSLTLTRKSVDPVLGGETAWQG 59 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 KT CP C + +A+++++Q RS+DEP + F++C QCAH+WRE Sbjct: 60 ADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104 [65][TOP] >UniRef100_A8XIZ3 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis briggsae RepID=A8XIZ3_CAEBR Length = 108 Score = 114 bits (286), Expect = 4e-24 Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+T+CP C +L +E E ++ + C CPYV I IS K +DDVLGG A Sbjct: 1 MLTFCPECGCVLQIETGEQCQQ--FSCSACPYVCPIVATISSRIYPKLKDIDDVLGGPGA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+N TD CP CS+ +AYFM++QTRSADEP T+F++C CAHRW+E Sbjct: 59 WENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCANNSCAHRWKE 108 [66][TOP] >UniRef100_A3LW94 DNA-directed RNA polymerase subunit n=1 Tax=Pichia stipitis RepID=A3LW94_PICST Length = 111 Score = 114 bits (286), Expect = 4e-24 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C+NMLL+ + R++C CPY + I+ + + L RK+VDDVLGG+ Sbjct: 1 MLSFCPNCSNMLLISAGDDGCN-RFYCPTCPYEFKINGLSMFERKKLYRKEVDDVLGGDG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP C ++AYF ++Q RSADEP T F+KCV C H+W+E Sbjct: 60 AWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKE 110 [67][TOP] >UniRef100_Q70W34 DNA-directed RNA polymerase subunit n=1 Tax=Kluyveromyces lactis RepID=Q70W34_KLULA Length = 112 Score = 113 bits (282), Expect = 1e-23 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C NMLLV + S + C CPY + ID ++ L RK+VDDVLGGE Sbjct: 1 MLSFCPLCNNMLLVSKAD-SGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP +C+ +AYF ++Q RSADEP T F+KCV C H+WRE Sbjct: 60 AWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111 [68][TOP] >UniRef100_B0ENS7 DNA-directed RNA polymerase III subunit RPC10, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0ENS7_ENTDI Length = 107 Score = 112 bits (281), Expect = 1e-23 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 2/111 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M +C C N+L+VE EL + C CPY + +KKI + L RKQ+D VLG E+ Sbjct: 1 MTFFCANCGNLLVVER---GTELYFKCSTCPYKFTFNKKIVYESELKRKQIDAVLG-EEQ 56 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382 WKN KT+ C KC Y+ AYFM+IQ RSADEP T F+KC C ++WR+G Sbjct: 57 WKNAQKTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107 [69][TOP] >UniRef100_A9QVW4 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis brenneri RepID=A9QVW4_CAEBE Length = 108 Score = 112 bits (281), Expect = 1e-23 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+T+CP C L +E + R+ C CPYV + +S K +DDVLGG A Sbjct: 1 MLTFCPECGCTLQIEQGDQCN--RFSCPACPYVCPVTHSVSSRIYPKLKDIDDVLGGPGA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 W+N TD CP CS+ +AYFM++QTRSADEP T+F++C CAHRW+E Sbjct: 59 WENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCANNACAHRWKE 108 [70][TOP] >UniRef100_B3MIT9 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila ananassae RepID=B3MIT9_DROAN Length = 342 Score = 112 bits (279), Expect = 2e-23 Identities = 52/104 (50%), Positives = 72/104 (69%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KI+ K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTSCHRFTCNTCPYISKIKRKITAKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAH 367 W+NV TDA CP+CS+ +AYFM++QTRSADEP T F+KC C H Sbjct: 59 WENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKC--CNH 100 [71][TOP] >UniRef100_C4Y9I4 DNA-directed RNA polymerase subunit n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9I4_CLAL4 Length = 111 Score = 112 bits (279), Expect = 2e-23 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C+NMLLV E + R +C CPY + I ++ + L RK VDDVLGG+ Sbjct: 1 MLSFCPYCSNMLLVSQGEDNCN-RLYCPTCPYEFRISGFQMFERKMLPRKDVDDVLGGDG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP C +AYF ++Q RSADEP T F+KC +C+H+WRE Sbjct: 60 AWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKCTKCSHQWRE 110 [72][TOP] >UniRef100_B5Y459 RNA polymerase C subunit 11 kDa n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y459_PHATR Length = 111 Score = 110 bits (276), Expect = 5e-23 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELR---YFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 +CP +L V++ + ++C CPY +ID + P RK VDD+LGG A Sbjct: 3 FCPLDGTLLQVQIRSGAVPAENSFFYCSTCPYSCSIDAPRTVKTPTKRKVVDDILGGAAA 62 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W+NV +T A CP C++++AYFM++Q RSADEP ++F+KCVQC+H+W + Sbjct: 63 WENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKCVQCSHQWND 110 [73][TOP] >UniRef100_C4M8P1 RNA polymerase III subunit, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M8P1_ENTHI Length = 107 Score = 110 bits (276), Expect = 5e-23 Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 2/111 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M +C C N+L+VE EL + C CPY + +KKI + L RKQ+D VLG E+ Sbjct: 1 MTFFCANCGNLLVVER---GTELYFKCNTCPYKFTFNKKIVYESELKRKQIDAVLG-EEQ 56 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382 WKN KT+ C KC ++ AYFM+IQ RSADEP T F+KC C ++WR+G Sbjct: 57 WKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107 [74][TOP] >UniRef100_B6K8S3 DNA-directed RNA polymerase subunit n=3 Tax=Toxoplasma gondii RepID=B6K8S3_TOXGO Length = 106 Score = 110 bits (274), Expect = 9e-23 Identities = 51/108 (47%), Positives = 67/108 (62%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M +CPTC NMLLV +++ C+ CPYV+NI +K+++ PL K+ D+ L Sbjct: 1 MALFCPTCHNMLLVR---QEVTMQFHCRTCPYVFNIKEKLTRKMPLTPKKADEPLDESQE 57 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AK A+CPKCS+ +AYF EIQ RSADEP T F+ C C RWRE Sbjct: 58 AARGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCNCRFRWRE 105 [75][TOP] >UniRef100_Q750C6 DNA-directed RNA polymerase subunit n=1 Tax=Eremothecium gossypii RepID=Q750C6_ASHGO Length = 112 Score = 107 bits (268), Expect = 5e-22 Identities = 55/112 (49%), Positives = 70/112 (62%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C NML V + S R C CPY + I+ +I L RK+VDDVLGGE Sbjct: 1 MLSFCPYCNNMLPVSKGD-SGVYRLGCPSCPYEFPIEGVEIYDRRNLPRKEVDDVLGGEG 59 Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T CP+ C +AYF ++Q RSADEP T F+KCV C H+WRE Sbjct: 60 AWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKCVTCGHKWRE 111 [76][TOP] >UniRef100_Q6C866 DNA-directed RNA polymerase subunit n=1 Tax=Yarrowia lipolytica RepID=Q6C866_YARLI Length = 110 Score = 107 bits (267), Expect = 6e-22 Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI-------DKKISKMAPLARKQVDD 214 M+T+CPTC NML L+ +R+ C+ CPY Y + D+K+ L +K+VD Sbjct: 1 MLTFCPTCTNMLT--LSTSGNGMRFECRTCPYEYYLQDGTIVYDRKV-----LEKKKVDS 53 Query: 215 VLGGEDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 VLGGE+AW+NV K + CPKCS AYF +Q RSADEP T F +C C H+WRE Sbjct: 54 VLGGENAWENVDKDPGSQCPKCSNMGAYFYMLQIRSADEPMTKFCRCTACFHQWRE 109 [77][TOP] >UniRef100_C4R616 DNA-directed RNA polymerase subunit n=1 Tax=Pichia pastoris GS115 RepID=C4R616_PICPG Length = 111 Score = 107 bits (266), Expect = 8e-22 Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI-DKKISKMAPLARKQVDDVLGGED 232 M+ +CP C NML V S R+ C CPY + I ++ + L+RKQVDDVLGG Sbjct: 1 MLMFCPNCQNMLTVTKAADSIN-RFNCPTCPYEFPIVGMQMYERKDLSRKQVDDVLGGAG 59 Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AW NV +T A CP C +AYF ++Q RSADEP T F KC +C H+WRE Sbjct: 60 AWDNVDQTGAQCPIDSCGGDKAYFFQLQIRSADEPMTTFLKCCKCGHQWRE 110 [78][TOP] >UniRef100_Q0U901 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0U901_PHANO Length = 118 Score = 106 bits (265), Expect = 1e-21 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%) Frame = +2 Query: 56 MITYCPTCANMLLVEL-------TEYSK-ELRYFCQCCPYVYNIDKKISKMAPLARKQVD 211 M+ +CPTC+N+L V TE + E R+ C CPY + I+K+ + + +K+V+ Sbjct: 1 MLLFCPTCSNVLRVSKVPPGDPNTEMNVGENRFECLTCPYQFVINKRYFERKYMKKKEVE 60 Query: 212 DVLGGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 D+LGG+ AW NV KT CP KC +AY+ ++Q RSADEP T F+KC +CA WRE Sbjct: 61 DILGGKGAWDNVDKTQVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKCTKCAKEWRE 118 [79][TOP] >UniRef100_B4HQM8 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila sechellia RepID=B4HQM8_DROSE Length = 325 Score = 106 bits (264), Expect = 1e-21 Identities = 50/101 (49%), Positives = 68/101 (67%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+C N+L++E E + R+ C CPY+ I +KIS K+VD VLGG+ A Sbjct: 1 MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISTKTFPRLKEVDHVLGGKAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ 358 W+NV TDA CP C + +AYFM+IQTRSADEP T F+ +Q Sbjct: 59 WENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYNRMQ 99 [80][TOP] >UniRef100_A8QFI6 DNA-directed RNA polymerase subunit n=1 Tax=Brugia malayi RepID=A8QFI6_BRUMA Length = 108 Score = 106 bits (264), Expect = 1e-21 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C + L +E E S ++ C CPYV I K I K +D+VLGG A Sbjct: 1 MLLFCPECGSSLQIE--EGSNCYQFACHNCPYVQPITKLIRSRHYPKLKDLDEVLGGPGA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 W+N T+ CP+C+ +AYFM++QTRSADEP T+F++C +CAHRW+E Sbjct: 59 WENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108 [81][TOP] >UniRef100_Q4P5F3 DNA-directed RNA polymerase subunit n=1 Tax=Ustilago maydis RepID=Q4P5F3_USTMA Length = 111 Score = 106 bits (264), Expect = 1e-21 Identities = 45/90 (50%), Positives = 66/90 (73%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTCAN L+++L ++ ++ C CPY + I ++++ L RKQVDDV+GGE++WKN Sbjct: 3 FCPTCANCLIIQLDDHGNN-KWSCHTCPYEFPIVRQMTTRQHLKRKQVDDVMGGEESWKN 61 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPA 334 V TDA CPKC +A+FM++Q RSADEP+ Sbjct: 62 VDSTDAPCPKCENPKAFFMQLQIRSADEPS 91 [82][TOP] >UniRef100_C0NUV3 DNA-directed RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus RepID=C0NUV3_AJECG Length = 117 Score = 106 bits (264), Expect = 1e-21 Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + S R+ C+ CPY Y +D+ + + RK+V DVLG Sbjct: 3 LTFCPNCSNALTISRADPSPRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVSDVLG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G+D WKN CP C +AYF ++Q RSADEP T FFKC C RWRE Sbjct: 63 GKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKCTTCGARWRE 116 [83][TOP] >UniRef100_UPI0000EB34E7 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III subunit C10) (DNA-directed RNA polymerase III subunit K) (RNA polymerase III subunit C11) (RPC11) (HsC11p) (hRPC11) (DNA-directed RNA polymerases III 12.5 kDa polypeptide). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB34E7 Length = 109 Score = 105 bits (262), Expect = 2e-21 Identities = 52/107 (48%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232 M+ +CP C N L+VE E + R+ C CPYV+NI +K+ + K+VDDVLGG Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVVTNRKYPKLKEVDDVLGGAA 58 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRW 373 AW+NV T +CPKC + +AYFM++QTRSADEP T F+K H W Sbjct: 59 AWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYK---SCHSW 102 [84][TOP] >UniRef100_Q2KF11 DNA-directed RNA polymerase subunit n=2 Tax=Magnaporthe grisea RepID=Q2KF11_MAGGR Length = 110 Score = 105 bits (262), Expect = 2e-21 Identities = 49/110 (44%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP+CAN+L V E K R C+ CPY + I++ + ARK+ +DV GG A Sbjct: 1 MLLFCPSCANVLTVSAMETGKN-RLECRTCPYEFAINEPLFSRKEFARKEREDVFGGPGA 59 Query: 236 WKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W N K CP C +A F ++Q RSADEP T F+KC+ C HRWRE Sbjct: 60 WDNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMTCGHRWRE 109 [85][TOP] >UniRef100_C6T364 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T364_SOYBN Length = 111 Score = 104 bits (259), Expect = 5e-21 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 4/110 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238 +CPTC NML EL + R+FC CPYV I+ + I + L K+++ + ED Sbjct: 3 FCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFS-EDDM 61 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382 N A T+ATCP C + +A F E QTRSAD PATLF+KC+ +C +WREG Sbjct: 62 TNAASTEATCPFCGHGKAAFKEFQTRSADGPATLFYKCLNNECKKQWREG 111 [86][TOP] >UniRef100_C5K7H8 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5K7H8_9ALVE Length = 594 Score = 103 bits (257), Expect = 9e-21 Identities = 44/102 (43%), Positives = 74/102 (72%), Gaps = 2/102 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 + +CPTC N+L+++ + ++Y+C+ CPY++ I +K+++ L ++ V+DVLGG DAW Sbjct: 360 VLFCPTCGNLLVLQAGHDT--MKYWCRTCPYLFPISEKLTQKEILHKEVVEDVLGGPDAW 417 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQ 358 K+V +T+A CP C ++AYF ++Q RSADEP T F++CV+ Sbjct: 418 KDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVK 459 [87][TOP] >UniRef100_B2VRT8 Putative uncharacterized protein n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VRT8_PYRTR Length = 108 Score = 103 bits (257), Expect = 9e-21 Identities = 45/93 (48%), Positives = 62/93 (66%), Gaps = 2/93 (2%) Frame = +2 Query: 107 EYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCP--KCS 280 +Y + R+ C CPY + I+ + + + +K VDDV+GG+DAW NV KT+ CP KC Sbjct: 16 DYVDKNRFVCLTCPYQFVIEGRYFERKYMKKKDVDDVIGGKDAWANVDKTEVQCPNEKCR 75 Query: 281 YHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 H+AY+ ++Q RSADEP T F+KC QCA WRE Sbjct: 76 NHEAYWYQLQIRSADEPMTAFYKCTQCAKEWRE 108 [88][TOP] >UniRef100_UPI0000ECAA73 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III subunit C10) (DNA-directed RNA polymerase III subunit K) (RNA polymerase III subunit C11) (RPC11) (HsC11p) (hRPC11) (DNA-directed RNA polymerases III 12.5 kDa polypeptide). n=1 Tax=Gallus gallus RepID=UPI0000ECAA73 Length = 99 Score = 103 bits (256), Expect = 1e-20 Identities = 48/99 (48%), Positives = 63/99 (63%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L+ E E + R+ C CPYV N+ +K+S K+VDDVLGG A Sbjct: 1 MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVSSRKYPRLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC 352 W+NV T CPKC + +AYFM+IQTRS D A F+KC Sbjct: 59 WENVDSTAEPCPKCEHSRAYFMQIQTRSPDSRANTFYKC 97 [89][TOP] >UniRef100_B8CB14 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8CB14_THAPS Length = 113 Score = 102 bits (255), Expect = 1e-20 Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 6/111 (5%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELR-----YFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGG 226 +CP +L V S + C CPY I +I K P+ RK+VDD+LGG Sbjct: 3 FCPLDGTLLQVITATSSASTSPSTNIFACTTCPYSQPITTPQIQKSFPI-RKKVDDILGG 61 Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 E AW+NV +T A CP CS+ +AYFM++Q RSADEP ++F+KCV+C+H+W + Sbjct: 62 EKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKCVKCSHQWND 112 [90][TOP] >UniRef100_C5L7A3 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L7A3_9ALVE Length = 327 Score = 102 bits (255), Expect = 1e-20 Identities = 46/108 (42%), Positives = 76/108 (70%), Gaps = 2/108 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 + +CPTC N+L+++ + ++Y+C+ CPY++ I +K+++ L K+V+DVLGG DAW Sbjct: 4 VLFCPTCGNLLVLQAGHDT--MKYWCRTCPYLFPISEKLTQKEIL-HKEVEDVLGGPDAW 60 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K+V +T+A CP C ++AYF ++Q RSADEP T F++CV+ + R Sbjct: 61 KDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVKSQEQTR 108 [91][TOP] >UniRef100_C5DU35 DNA-directed RNA polymerase subunit n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DU35_ZYGRC Length = 110 Score = 102 bits (254), Expect = 2e-20 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C NMLL+ ++ S C+ CPY + I+ ++ L RK+VDDVLGG Sbjct: 1 MLSFCPLCNNMLLIASSD-SGIYTLTCKSCPYEFPIEGIEVYDRKKLPRKEVDDVLGG-- 57 Query: 233 AWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T CP KC+ AYF ++Q RSADEP T FFKCV C +RW+E Sbjct: 58 GWDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKCVNCGNRWKE 109 [92][TOP] >UniRef100_Q04307 DNA-directed RNA polymerase III subunit RPC10 n=5 Tax=Saccharomyces cerevisiae RepID=RPC10_YEAST Length = 110 Score = 102 bits (253), Expect = 3e-20 Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP+C NMLL+ + S C+ CPY + I+ +I L RK+VDDVLGG Sbjct: 1 MLSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG-- 57 Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T CP C AYF ++Q RSADEP T F+KCV C HRW+E Sbjct: 58 GWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109 [93][TOP] >UniRef100_C5Y1A6 Putative uncharacterized protein Sb04g032090 n=1 Tax=Sorghum bicolor RepID=C5Y1A6_SORBI Length = 166 Score = 101 bits (252), Expect = 3e-20 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%) Frame = +2 Query: 47 RLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGG 226 R + + +CP C +L ++ S LR FC CPYV I KI K A L +K+V+ + Sbjct: 53 RGRAMEFCPVCGMLLQIDPGTASHRLRLFCSVCPYVCPIQNKIVKKARLVKKEVEPIFST 112 Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 D K+ KT TC +C++ +AYF ++Q RSADEP T ++C +C H WRE Sbjct: 113 ADEMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 165 [94][TOP] >UniRef100_UPI000023DFAF hypothetical protein FG08551.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023DFAF Length = 110 Score = 101 bits (251), Expect = 4e-20 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP CAN+L V LT ++ R C+ CP+ ++I + + R + +DV GG A Sbjct: 1 MLLFCPHCANILTVSLTS-TRTNRLECRTCPFEHHITEPVFSRRLYERVEREDVFGGPGA 59 Query: 236 WKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W N K A CP C +A F ++Q RSADEP T FFKC+ C HRWRE Sbjct: 60 WDNAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKCMSCGHRWRE 109 [95][TOP] >UniRef100_Q6EU09 DNA-directed RNA polymerase subunit n=1 Tax=Oryza sativa Japonica Group RepID=Q6EU09_ORYSJ Length = 110 Score = 101 bits (251), Expect = 4e-20 Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +L ++ LR++C CPYV + KI K A L +K+V+ + DA KN Sbjct: 3 FCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKNKIVKKARLVKKEVEPIFSDSDAMKN 62 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 KT TCP+C +AY+ ++Q RSADEP + F+KC +C WRE Sbjct: 63 APKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 109 [96][TOP] >UniRef100_C5DE90 DNA-directed RNA polymerase subunit n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DE90_LACTC Length = 127 Score = 101 bits (251), Expect = 4e-20 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 4/113 (3%) Frame = +2 Query: 53 KMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGE 229 KM+++CP C NML++ + S C CPY + I+ ++ L RK+VDDVLGG Sbjct: 17 KMLSFCPHCHNMLVISQAD-SGAYALQCGACPYAFPIEGVEVYDRKTLPRKEVDDVLGG- 74 Query: 230 DAWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T CP +C +AYF ++Q RSADEP T F+KCV C +RWRE Sbjct: 75 -GWDNVDQTAVQCPNYDECGGERAYFFQLQIRSADEPMTTFYKCVSCGNRWRE 126 [97][TOP] >UniRef100_A7TL36 DNA-directed RNA polymerase subunit n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TL36_VANPO Length = 110 Score = 101 bits (251), Expect = 4e-20 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232 M+++CP C NMLLV ++ S C+ CPY + I+ +I L RK++DDVLGG Sbjct: 1 MLSFCPLCNNMLLVATSD-SGIYNLSCRSCPYEFPIENVEIYDRKELERKEIDDVLGG-- 57 Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W NV +T CP C+ AYF ++Q RSADEP T F+KCV C +RW+E Sbjct: 58 GWDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKE 109 [98][TOP] >UniRef100_C5FE71 DNA-directed RNA polymerase subunit n=1 Tax=Microsporum canis CBS 113480 RepID=C5FE71_NANOT Length = 117 Score = 100 bits (250), Expect = 6e-20 Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + R+ C+ CPY Y +D+ + + RK+V DV+G Sbjct: 3 LTFCPNCSNALTISKAPPTSRYPAGVNRFECRTCPYQYALDRTYYERTEMKRKEVADVMG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G+D WKN A CP C +A+F ++Q RSADEP T F+KC C RWRE Sbjct: 63 GKDEWKNADSMPAQCPAEGCEGDRAFFYQLQIRSADEPMTTFYKCSVCGTRWRE 116 [99][TOP] >UniRef100_B6K2W2 DNA-directed RNA polymerase subunit n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2W2_SCHJY Length = 109 Score = 100 bits (249), Expect = 7e-20 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTC N L+V + E + C+ CPY + I + A+KQVDDVLGG++AW++ Sbjct: 3 FCPTCGNHLIVSVDENGTNT-FDCRTCPYRFPISILMYHRHEFAQKQVDDVLGGKEAWES 61 Query: 245 VAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +TD C C +AYF ++Q RSADEP + F++C +C ++WRE Sbjct: 62 NQQTDIPCENKNCDNRRAYFFQLQIRSADEPMSTFYRCTECGYQWRE 108 [100][TOP] >UniRef100_O13896 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Schizosaccharomyces pombe RepID=RPC10_SCHPO Length = 109 Score = 100 bits (249), Expect = 7e-20 Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTC N L+V + E + + C+ CPY + I + A+K+VDDVLGGE+A+++ Sbjct: 3 FCPTCGNHLIVAVDEEGRNA-FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFES 61 Query: 245 VAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +T+ TC KC ++AYF ++Q RSADEP + F++C +C +WRE Sbjct: 62 NQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108 [101][TOP] >UniRef100_B6AHL8 DNA-directed RNA polymerase III subunit RPC10, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AHL8_9CRYT Length = 106 Score = 100 bits (248), Expect = 1e-19 Identities = 45/108 (41%), Positives = 68/108 (62%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+LL+ E + FCQ CP++ ++K+I K+ L K+ ++ G + Sbjct: 1 MVQFCPHCHNILLIR--EIDERTALFCQTCPFIQKLNKQIVKVTELTPKKPEEAQGDMNE 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + AK A CPKCS +AYF ++Q RSADEP T F+ CV+C H+W+E Sbjct: 59 IAS-AKVMAVCPKCSNTEAYFFQLQIRSADEPMTSFYTCVKCEHKWKE 105 [102][TOP] >UniRef100_C1GU30 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GU30_PARBA Length = 128 Score = 99.8 bits (247), Expect = 1e-19 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 I+ CP C+N L + E + R+ C+ CPY Y +D+ + + RK+V DVLG Sbjct: 14 ISVCPNCSNALTISRAEPTSRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVADVLG 73 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G+D WKN CP C +A+F ++Q RSADEP T F KC C RWRE Sbjct: 74 GKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 127 [103][TOP] >UniRef100_UPI0001986315 PREDICTED: similar to Os02g0672700 n=1 Tax=Vitis vinifera RepID=UPI0001986315 Length = 111 Score = 99.4 bits (246), Expect = 2e-19 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238 +CPTC N L EL + R+FC CPYV +I+ K I + L +K+++ + +D Sbjct: 3 FCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDDM- 61 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 KN TDATCP C++ +A F ++QTRSADEP + F+ C+ C +WRE Sbjct: 62 KNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRE 110 [104][TOP] >UniRef100_UPI0001792CC5 PREDICTED: similar to GA17233-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792CC5 Length = 97 Score = 99.4 bits (246), Expect = 2e-19 Identities = 46/107 (42%), Positives = 63/107 (58%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 I +CP C+N+L L EY E+R CQ ++D VLGG++AW Sbjct: 14 IDFCPNCSNIL--HLDEYLGEMRQKCQ---------------------EIDSVLGGKNAW 50 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +NV D C C++ +AYF+++QTRSADEP T+F+KC C HRWRE Sbjct: 51 ENVDSIDVVCNSCNHGRAYFLQVQTRSADEPMTVFYKCCNCGHRWRE 97 [105][TOP] >UniRef100_Q6MUM9 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa RepID=Q6MUM9_NEUCR Length = 112 Score = 99.4 bits (246), Expect = 2e-19 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 I +CP CAN+L++ + R C+ CPY + IDK I RK+ +DV GG AW Sbjct: 3 IVFCPFCANLLILSRADTGGN-RLECRTCPYEHPIDKPIYSRKNFPRKEKEDVFGGPGAW 61 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N K C C+ ++A F ++Q RSADEP T F+KC+ C HRWR+ Sbjct: 62 DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKCMTCGHRWRD 110 [106][TOP] >UniRef100_Q1E154 Putative uncharacterized protein n=1 Tax=Coccidioides immitis RepID=Q1E154_COCIM Length = 117 Score = 98.6 bits (244), Expect = 3e-19 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + + R+ C+ CPY Y +D+ + + RK+V DV+G Sbjct: 3 LTFCPNCSNALTISKGPPTSQYPLGVNRFECRTCPYQYVLDRTYFERTEMKRKEVADVMG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G+D WKN CP C +A+F ++Q RSADEP T F KC C RWRE Sbjct: 63 GKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 116 [107][TOP] >UniRef100_C5P9J4 DNA-directed RNA polymerase III subunit RPC10, putative n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5P9J4_COCP7 Length = 117 Score = 98.6 bits (244), Expect = 3e-19 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + + R+ C+ CPY Y +D+ + + RK+V DV+G Sbjct: 3 LTFCPNCSNALTISRGPPTSQYPLGVNRFECRTCPYQYVLDRTYFERTEMKRKEVADVMG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G+D WKN CP C +A+F ++Q RSADEP T F KC C RWRE Sbjct: 63 GKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 116 [108][TOP] >UniRef100_A2EBM6 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2EBM6_TRIVA Length = 109 Score = 97.8 bits (242), Expect = 5e-19 Identities = 46/107 (42%), Positives = 66/107 (61%) Frame = +2 Query: 62 TYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241 ++CP C N+LLV+ + +L+ C+ C +V + + APL V ++ +DA Sbjct: 5 SFCPACGNLLLVDTSGDRTQLK--CRACNFVMGFVGRTVQSAPLNPLDVKALITNDDAMS 62 Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 KT A C KC +++A+F EIQ RSADEPATLFFKC +C + WREG Sbjct: 63 FQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCCKCGNTWREG 109 [109][TOP] >UniRef100_C9SAW1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SAW1_9PEZI Length = 110 Score = 97.8 bits (242), Expect = 5e-19 Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP CAN+L V S R C+ CP+ + I I RK+ +DV GG Sbjct: 1 MLVFCPNCANILTVSAVG-SVRNRLECRTCPFEHPITAPIYSRREFERKEREDVFGGPGE 59 Query: 236 WKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W N K A CPK C+ +A F ++Q RSADEP T FFKC+ C +RWRE Sbjct: 60 WDNADKARAQCPKEGCNGDEAAFFQVQIRSADEPMTTFFKCMACGNRWRE 109 [110][TOP] >UniRef100_B4FDM3 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FDM3_MAIZE Length = 110 Score = 97.4 bits (241), Expect = 6e-19 Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +L ++ S LR FC CPYV I KI K A L +K+V+ + D K+ Sbjct: 3 FCPVCGILLQIDPGTGSHRLRLFCPVCPYVCPILNKIVKKARLVKKEVEPISSTADEMKS 62 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 KT TC +C++ +AYF ++Q RSADEP T ++C +C H WRE Sbjct: 63 APKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 109 [111][TOP] >UniRef100_Q2H571 DNA-directed RNA polymerase subunit n=1 Tax=Chaetomium globosum RepID=Q2H571_CHAGB Length = 111 Score = 97.4 bits (241), Expect = 6e-19 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 2/109 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 I +CP CAN+L++ + R C+ CPY + I+ I RK+ +DV GG AW Sbjct: 3 ILFCPYCANLLILSRMDTGGN-RLECRTCPYQHAIEMPIYSRKNFPRKEKEDVFGGPGAW 61 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N K CP C+ +A F ++Q RSADEP T F+KC+ C HRWRE Sbjct: 62 DNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKCMTCGHRWRE 110 [112][TOP] >UniRef100_UPI000187D2C9 hypothetical protein MPER_04676 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187D2C9 Length = 92 Score = 96.3 bits (238), Expect = 1e-18 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%) Frame = +2 Query: 65 YCPTCANMLLVEL-TEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241 +CPTCAN+L+V T ++K + C CPY + I K+ L RK+VDDVLGG++ WK Sbjct: 3 FCPTCANLLVVSSETGFNK---WACNTCPYEFPITKQARSSTKLKRKEVDDVLGGDEMWK 59 Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPAT 337 + T A+CP+C+ QAYF ++Q RSADEP T Sbjct: 60 HADSTAASCPRCNNGQAYFYQLQIRSADEPMT 91 [113][TOP] >UniRef100_Q98TK0 RNA polymerase III smallest subunit (Fragment) n=1 Tax=Platichthys flesus RepID=Q98TK0_PLAFE Length = 87 Score = 96.3 bits (238), Expect = 1e-18 Identities = 46/89 (51%), Positives = 62/89 (69%) Frame = +2 Query: 83 NMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDA 262 N+L+VE E K +R+ C CPYV++I +K++ K+VDDVLGG AW+NV T Sbjct: 1 NVLIVE--EGQKCMRFACNTCPYVHSITRKVNYRKFPKLKEVDDVLGGAKAWENVDSTPE 58 Query: 263 TCPKCSYHQAYFMEIQTRSADEPATLFFK 349 TCP C + +AYFM+IQTRSADEP T F++ Sbjct: 59 TCPTCGHLRAYFMQIQTRSADEPMTTFYR 87 [114][TOP] >UniRef100_B9SBZ2 DNA-directed RNA polymerase III, putative n=1 Tax=Ricinus communis RepID=B9SBZ2_RICCO Length = 112 Score = 96.3 bits (238), Expect = 1e-18 Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGEDAW 238 +CPTC +L EL + R++C CPYV +I+ KI + L +K+++ V +D Sbjct: 3 FCPTCGVLLRYELPNMGQSARFYCSTCPYVCSIESRVKIKRKQQLIKKEIEPVFTLDDMM 62 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 K ++T+ATCP C++ +A F +Q RSADEPAT F+ C+ +C+ WRE Sbjct: 63 KGGSETEATCPHCNFGRARFQSLQIRSADEPATTFYFCLNEKCSRVWRE 111 [115][TOP] >UniRef100_B9I5C8 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I5C8_POPTR Length = 112 Score = 96.3 bits (238), Expect = 1e-18 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGEDAW 238 +CPTC +L E + R++C CPY +I+ KI + LA+K+++ + ED Sbjct: 3 FCPTCGMLLRYETPNMGQAARFYCPTCPYFASIESRVKIKRKQKLAKKEIEPIFTLEDMK 62 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 A+TDATCP C++ +A F +IQ RSADEPAT F+ C+ +C WRE Sbjct: 63 TGGAETDATCPHCNFGRACFQQIQIRSADEPATTFYFCLNEKCGRMWRE 111 [116][TOP] >UniRef100_A2RAZ1 Complex: hRPC11 is a small n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2RAZ1_ASPNC Length = 117 Score = 96.3 bits (238), Expect = 1e-18 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + E + R+ C+ CPY Y +D+ + P+ +K+V+DV G Sbjct: 3 LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQSWFEKTPMKQKEVEDVFG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G++ + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 63 GKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 116 [117][TOP] >UniRef100_Q54K02 RNA polymerase III subunit n=1 Tax=Dictyostelium discoideum RepID=Q54K02_DICDI Length = 111 Score = 95.9 bits (237), Expect = 2e-18 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241 +CP CANMLL++ ++ RYFCQ CPY+++I K+ PL RK +D DV GGE+AWK Sbjct: 3 FCPLCANMLLIDPD--LQDTRYFCQTCPYIFHIKNKVVTKVPLQRKIIDSDVFGGEEAWK 60 Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 + + C C Y +A +EIQ +P T +++C C ++W++ Sbjct: 61 SADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKNPGCENQWQK 108 [118][TOP] >UniRef100_B6H1G4 DNA-directed RNA polymerase subunit n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H1G4_PENCW Length = 116 Score = 95.9 bits (237), Expect = 2e-18 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220 M+ +CP C+N L + E S R+ C+ CPY ++K + + +K+VDDV Sbjct: 1 MLVFCPNCSNALTISKAESSTRFPAGVNRFECRVCPYEAPLEKNYFEKKAMKQKEVDDVF 60 Query: 221 GGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 GG++ + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 61 GGKEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKCTSCGARWRE 115 [119][TOP] >UniRef100_Q9ZQC0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana RepID=Q9ZQC0_ARATH Length = 106 Score = 94.7 bits (234), Expect = 4e-18 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238 +CPTC N+L E S R+FC CPYV NI+++ I K L +K ++ V+ +D Sbjct: 3 FCPTCGNLLRYEGGGSS---RFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDI- 58 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A+T+A CP+C + +AYF +Q RSADEP + F++C++C WRE Sbjct: 59 PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105 [120][TOP] >UniRef100_B9F1L5 DNA-directed RNA polymerase subunit n=2 Tax=Oryza sativa RepID=B9F1L5_ORYSJ Length = 106 Score = 94.7 bits (234), Expect = 4e-18 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +L ++ LR++C CPYV I KK A L +K+V+ + DA KN Sbjct: 3 FCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPIVKK----ARLVKKEVEPIFSDSDAMKN 58 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 KT TCP+C +AY+ ++Q RSADEP + F+KC +C WRE Sbjct: 59 APKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 105 [121][TOP] >UniRef100_C7YMJ1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YMJ1_NECH7 Length = 126 Score = 94.4 bits (233), Expect = 5e-18 Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 2/109 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 + CP CAN+L V T ++ R C+ CP+ ++I + + R + +DV GG AW Sbjct: 18 LAVCPHCANILTVSFTN-TRTNRLECRTCPFEHHITEPVFSRRMYERVEKEDVFGGPGAW 76 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N K CP C+ +A F ++Q RSADEP T F+KC+ C HRWRE Sbjct: 77 DNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKCMTCGHRWRE 125 [122][TOP] >UniRef100_UPI000187D4AA hypothetical protein MPER_05318 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187D4AA Length = 70 Score = 94.0 bits (232), Expect = 7e-18 Identities = 39/63 (61%), Positives = 49/63 (77%) Frame = +2 Query: 191 LARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHR 370 L RK+VDDVLGGE+ WK+ T A+CPKC+ QAYF ++Q RSADEP T F++C CAH+ Sbjct: 7 LKRKEVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPMTTFYRCTACAHQ 66 Query: 371 WRE 379 WRE Sbjct: 67 WRE 69 [123][TOP] >UniRef100_UPI0000E8102D PREDICTED: hypothetical protein n=1 Tax=Gallus gallus RepID=UPI0000E8102D Length = 98 Score = 92.4 bits (228), Expect = 2e-17 Identities = 43/90 (47%), Positives = 58/90 (64%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N+L+ E E + R+ C CPYV N+ +K+S K+VDDVLGG A Sbjct: 1 MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVSSRKYPRLKEVDDVLGGAAA 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSAD 325 W+NV T CPKC + +AYFM+IQTRS + Sbjct: 59 WENVDSTAEPCPKCEHSRAYFMQIQTRSPE 88 [124][TOP] >UniRef100_B0XPK1 RNA polymerase III subunit C11, putative n=2 Tax=Aspergillus fumigatus RepID=B0XPK1_ASPFC Length = 116 Score = 92.0 bits (227), Expect = 3e-17 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220 M+T+CP C N L + E ++E R+ C+ CPY + + + + +K+V+DV Sbjct: 1 MLTFCPNCGNSLTISRGEPTREYPLGVNRFECRTCPYQHLLKHGRQEKTTMKQKEVEDVF 60 Query: 221 GGEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 GG++ + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 61 GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115 [125][TOP] >UniRef100_A1CR48 RNA polymerase III subunit C11, putative n=1 Tax=Aspergillus clavatus RepID=A1CR48_ASPCL Length = 116 Score = 92.0 bits (227), Expect = 3e-17 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220 M+T+CP C N L + E +++ R+ C+ CPY + + + + +K+V+DVL Sbjct: 1 MLTFCPNCGNSLTISRGEPTRDYPLGVNRFECRTCPYQHILKNGRQEKTIMKQKEVEDVL 60 Query: 221 GGEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 GG++ + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 61 GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115 [126][TOP] >UniRef100_Q8LE40 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana RepID=Q8LE40_ARATH Length = 106 Score = 91.7 bits (226), Expect = 3e-17 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238 +CPTC N+L E S R+FC CPYV I+++ I K L +K ++ V+ +D Sbjct: 3 FCPTCGNLLRYEGGGSS---RFFCSTCPYVAYIERRVEIKKKQLLVKKSIEPVVTKDDI- 58 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A+T+A CP+C + +AYF +Q RSADEP + F++C++C WRE Sbjct: 59 PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105 [127][TOP] >UniRef100_B8NLF0 DNA-directed RNA polymerase subunit n=2 Tax=Aspergillus RepID=B8NLF0_ASPFN Length = 117 Score = 91.7 bits (226), Expect = 3e-17 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + + R+ C+ CPY Y +++ + + +K+V+DV G Sbjct: 3 LTFCPNCSNALTISRADPTPRHPLGVNRFECRTCPYQYVLEQSYFEKTEMKQKEVEDVFG 62 Query: 224 GEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 G++ + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 63 GKEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKCTSCGARWRE 116 [128][TOP] >UniRef100_A5KBL4 Transcription factor, putative n=1 Tax=Plasmodium vivax RepID=A5KBL4_PLAVI Length = 106 Score = 90.5 bits (223), Expect = 8e-17 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208 M +CP C N++LV + + ++C+ C + Y I KI +K PL V Sbjct: 1 MAFFCPNCHNIVLVHV---ENGVYFYCKTCNFKYKIRNKIFNKFDCKEYNKTIPLDAVDV 57 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ KN++KT A CPKC++ +AYF +Q RSADEP+TLF+ CV+C H W+E Sbjct: 58 NN--------KNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYICVKCNHHWKE 106 [129][TOP] >UniRef100_Q9LNK0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana RepID=Q9LNK0_ARATH Length = 106 Score = 90.1 bits (222), Expect = 1e-16 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238 +CPTC N+L E S R+FC CPYV I ++ I K L +K ++ V+ +D Sbjct: 3 FCPTCGNLLRYEGGGNS---RFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI- 58 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A+T+A CP+C + +AYF +Q RSADEP + F++C++C WRE Sbjct: 59 PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105 [130][TOP] >UniRef100_Q6FRH9 DNA-directed RNA polymerase subunit n=1 Tax=Candida glabrata RepID=Q6FRH9_CANGA Length = 100 Score = 90.1 bits (222), Expect = 1e-16 Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 4/86 (4%) Frame = +2 Query: 134 CQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK---CSYHQAYFM 301 C+ CPY + I+ +I L RK+VDDVLGG W NV +T CP C AYF Sbjct: 16 CRSCPYEFPIESIEIYDRKKLPRKEVDDVLGG--GWDNVDQTKVQCPNYDTCGGESAYFF 73 Query: 302 EIQTRSADEPATLFFKCVQCAHRWRE 379 ++Q RSADEP T F+KCV CAHRW+E Sbjct: 74 QLQIRSADEPMTTFYKCVNCAHRWKE 99 [131][TOP] >UniRef100_C1G1F3 Putative uncharacterized protein n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1G1F3_PARBD Length = 137 Score = 90.1 bits (222), Expect = 1e-16 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Frame = +2 Query: 125 RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK--CSYHQAYF 298 R+ C+ CPY Y +D+ + + RK+V DVLGG+D WKN CP C +A+F Sbjct: 50 RFECRTCPYQYILDRTYYERTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDRAFF 109 Query: 299 MEIQTRSADEPATLFFKCVQCAHRWRE 379 ++Q RSADEP T F KC C RWRE Sbjct: 110 YQLQIRSADEPMTTFLKCTTCGARWRE 136 [132][TOP] >UniRef100_C4V7E3 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V7E3_NOSCE Length = 105 Score = 89.7 bits (221), Expect = 1e-16 Identities = 43/105 (40%), Positives = 63/105 (60%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C N+L ++ + + + + C CPY Y I+ +K A VD VLG ED +K Sbjct: 3 FCPLCTNILAID--KLNIQTAFICNTCPYQYKINMVFNKSARNNVIAVDKVLG-EDEYKY 59 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + + C KC ++A FME+QTRSADEP T+F++CV C W+E Sbjct: 60 ASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECVLCKTNWKE 104 [133][TOP] >UniRef100_O96159 Transcription factor, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=O96159_PLAF7 Length = 106 Score = 89.4 bits (220), Expect = 2e-16 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208 M +CP C N++LV + K + ++C+ C Y Y I KI +K PL + Sbjct: 1 MAFFCPNCHNIVLVHI---EKGVYFYCKSCNYKYKIKNKIYNKFDCQQFNKTIPLDAVDI 57 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ KN++KT A CPKC+ +AYF +Q RSADEP+T+F+ CV+C + W+E Sbjct: 58 NN--------KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106 [134][TOP] >UniRef100_B3L0T6 Transcription factor, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L0T6_PLAKH Length = 106 Score = 89.4 bits (220), Expect = 2e-16 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208 M +CP C N++LV + + ++C+ C + Y I KI +K PL + Sbjct: 1 MAFFCPNCHNIVLVNI---ENGVYFYCKTCNFKYKIKNKIFNKFDCRDLNKTIPLDAVDM 57 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ KN++KT A CPKC++ +AYF +Q RSADEP+TLF+ C++C H W+E Sbjct: 58 NN--------KNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYICIKCNHHWKE 106 [135][TOP] >UniRef100_B2ATA0 DNA-directed RNA polymerase subunit n=1 Tax=Podospora anserina RepID=B2ATA0_PODAN Length = 111 Score = 89.4 bits (220), Expect = 2e-16 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 I +CP CANML++ + R C+ CPY + I+K + + +D+ GG DAW Sbjct: 3 ILFCPYCANMLILSRMDTGGN-RVECRTCPYQHAIEKPYYSRKVFPKVEKEDLFGGPDAW 61 Query: 239 KNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N K C +CS +A F ++Q RSADEP T F++C+ C WRE Sbjct: 62 ANAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRCLTCGKNWRE 110 [136][TOP] >UniRef100_C5JU87 DNA-directed RNA polymerase subunit n=1 Tax=Ajellomyces dermatitidis SLH14081 RepID=C5JU87_AJEDS Length = 111 Score = 88.6 bits (218), Expect = 3e-16 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 7/104 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + + R+ C+ CPY Y +D+ + + RK+V DVLG Sbjct: 3 LTFCPNCSNALTISRADPTPRYPLGVNRFECRTCPYQYVLDRTYYERTEMKRKEVADVLG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349 G+D WKN CP C +AYF ++Q RSADEP T FFK Sbjct: 63 GKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFK 106 [137][TOP] >UniRef100_B5X7W8 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Salmo salar RepID=B5X7W8_SALSA Length = 93 Score = 87.8 bits (216), Expect = 5e-16 Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 2/62 (3%) Frame = +2 Query: 200 KQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRW 373 K+VDDVLGG AW+NV T CPKC + +A+FM+IQTRSADEP T F+KC +C HRW Sbjct: 32 KEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRW 91 Query: 374 RE 379 R+ Sbjct: 92 RD 93 [138][TOP] >UniRef100_B8M829 RNA polymerase III subunit C11, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M829_TALSN Length = 116 Score = 87.8 bits (216), Expect = 5e-16 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L V E S R+ C+ CPY + ID+ + L +K+V+ V Sbjct: 3 LTFCPHCSNALTVSRAEPSTTYPMGVNRFQCRTCPYQFVIDRLYVEEKVLKQKEVEVVFN 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 E+ +KN K CP C+ AYF ++Q RSADEP T F +C CA WR+ Sbjct: 63 DEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTTCAKTWRD 116 [139][TOP] >UniRef100_C0S3L8 DNA-directed RNA polymerase subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S3L8_PARBP Length = 134 Score = 86.7 bits (213), Expect = 1e-15 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 7/104 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + +E + R+ C+ CPY Y +D+ + + RK+V DVLG Sbjct: 3 LTFCPNCSNALTISRSEPTSRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVADVLG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349 G+D WKN CP C +A+F ++Q RSADEP T F K Sbjct: 63 GKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLK 106 [140][TOP] >UniRef100_B6Q634 RNA polymerase III subunit C11, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6Q634_PENMQ Length = 116 Score = 86.7 bits (213), Expect = 1e-15 Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L V + S R+ C+ CPY + ID+ + L +K+V+ V Sbjct: 3 LTFCPHCSNALTVSRADPSTAYPMGVNRFQCRTCPYQFVIDRLYVEEKVLKQKEVEVVFN 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 E+ +KN K CP C+ AYF ++Q RSADEP T F +C CA WR+ Sbjct: 63 DEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTTCAKTWRD 116 [141][TOP] >UniRef100_A9UWA6 DNA-directed RNA polymerase subunit n=1 Tax=Monosiga brevicollis RepID=A9UWA6_MONBE Length = 109 Score = 86.3 bits (212), Expect = 1e-15 Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 4/110 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYF--CQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGED 232 +CP C NML+++ + + YF C CPY + + + ++ + ++ D++ GG+ Sbjct: 3 FCPLCGNMLIMQSSLHG----YFFGCNTCPYKHELGEHRVTARRSMHHDERADEIYGGDS 58 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382 A + + T+A CPKC +++A +++ QTRSADEP+T+F+ C +C H+W +G Sbjct: 59 AKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFYCCEKCNHKWNDG 108 [142][TOP] >UniRef100_A1D3Y9 RNA polymerase III subunit C11, putative (Fragment) n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D3Y9_NEOFI Length = 116 Score = 86.3 bits (212), Expect = 1e-15 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%) Frame = +2 Query: 68 CPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED 232 CP C N L + E ++E R+ C+ CPY + + + + +K+V+DV GG++ Sbjct: 5 CPNCGNSLTISRGEPTREYPLGVNRFECRTCPYQHLLKHGRQEKTTMKQKEVEDVFGGKE 64 Query: 233 AWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + N CP C+ +AYF ++Q RSADEP T F KC C RWRE Sbjct: 65 EFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115 [143][TOP] >UniRef100_Q9Y1T9 Transcription factor IIS homolog (Fragment) n=1 Tax=Giardia intestinalis RepID=Q9Y1T9_GIALA Length = 70 Score = 85.1 bits (209), Expect = 3e-15 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +2 Query: 173 ISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC 352 IS+ L RK VD VLGGE AW+ KT CP C++ A+++++Q RS+DEP + F++C Sbjct: 1 ISRSLTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRC 60 Query: 353 VQCAHRWRE 379 QCAH+WRE Sbjct: 61 CQCAHQWRE 69 [144][TOP] >UniRef100_Q4YPC3 Transcription factor, putative n=1 Tax=Plasmodium berghei RepID=Q4YPC3_PLABE Length = 106 Score = 85.1 bits (209), Expect = 3e-15 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208 M +CP C N++LV + + +C+ C + Y I KI +K PL + Sbjct: 1 MAFFCPNCHNIVLVHV---ENGVYLYCKTCNFKYKIKNKIYNKYDCKEFNKTIPLDAVDM 57 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ KN++KT A CPKC++ +AYF +Q RSADEP+TLF+ CV C + W+E Sbjct: 58 NN--------KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106 [145][TOP] >UniRef100_Q4Y0E1 Putative uncharacterized protein n=1 Tax=Plasmodium chabaudi RepID=Q4Y0E1_PLACH Length = 106 Score = 85.1 bits (209), Expect = 3e-15 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208 M +CP C N++LV + + +C+ C + Y I KI +K PL + Sbjct: 1 MAFFCPNCHNIVLVHV---ENGVYLYCKTCNFKYKIKNKIYNKYDCTEFNKTIPLDAVDM 57 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ KN++KT A CPKC++ +AYF +Q RSADEP+TLF+ CV C + W+E Sbjct: 58 NN--------KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106 [146][TOP] >UniRef100_Q15ES4 DNA-directed RNA polymerase , putative n=1 Tax=Schistosoma mansoni RepID=Q15ES4_SCHMA Length = 115 Score = 85.1 bits (209), Expect = 3e-15 Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLG 223 + +CP C ++L++E + + L C Y + + + + + R + D V Sbjct: 3 VLFCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFS 62 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ED + + A+TD CPKCS+ +AYF+++QTRSADEP+T+ + C++C H W E Sbjct: 63 VEDEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114 [147][TOP] >UniRef100_A7EJA6 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EJA6_SCLS1 Length = 123 Score = 83.6 bits (205), Expect = 9e-15 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 14/122 (11%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKEL------------RYFCQCCPYVYNIDKKISKMAPLAR 199 M+ +CP+C+N+L V +T +S R C CPY Y + + I R Sbjct: 1 MLLFCPSCSNILTVSVTPHSSTPTPTSTQDLSGANRLECLTCPYQYILTRSIYDRKTFVR 60 Query: 200 KQVDDVLGGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRW 373 ++ +DV GG+DAW N C +C+ A +Q RSADEP T F++C+ CA++W Sbjct: 61 EEKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYRCMTCANQW 120 Query: 374 RE 379 RE Sbjct: 121 RE 122 [148][TOP] >UniRef100_A2BN99 DNA-directed RNA polymerase subunit M n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BN99_HYPBU Length = 114 Score = 83.6 bits (205), Expect = 9e-15 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-------VLG 223 +CP C +++ + T + + C C Y + + + RK++ V+ Sbjct: 3 FCPRCGSLMTLRRT--NDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVD 60 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 WK + KT A CP+C YH+AY +QTR ADEP T FFKCV C + WRE Sbjct: 61 PNVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVSCGYVWRE 112 [149][TOP] >UniRef100_A8Q173 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q173_MALGO Length = 68 Score = 83.2 bits (204), Expect = 1e-14 Identities = 36/53 (67%), Positives = 43/53 (81%) Frame = +2 Query: 191 LARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFK 349 L RKQVDDV+GGED+WKNV TDATCPKC +AYFM++Q RSADEP+T + Sbjct: 3 LERKQVDDVMGGEDSWKNVDSTDATCPKCDNGRAYFMQLQIRSADEPSTFLIR 55 [150][TOP] >UniRef100_UPI000155C09B PREDICTED: hypothetical protein, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155C09B Length = 68 Score = 82.8 bits (203), Expect = 2e-14 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 2/60 (3%) Frame = +2 Query: 200 KQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRW 373 K+VDDVLGG AW+NV T + PKC + +AYFM+IQTRSADEP T F+KC VQC HRW Sbjct: 10 KEVDDVLGGAAAWENVDST-SRAPKCEHPRAYFMQIQTRSADEPMTTFYKCCNVQCGHRW 68 [151][TOP] >UniRef100_Q8SSB3 DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSB3_ENCCU Length = 104 Score = 82.8 bits (203), Expect = 2e-14 Identities = 38/105 (36%), Positives = 64/105 (60%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C++ML+V+ EL C+ C Y+Y I ++IS+ + K+ + + +++ K Sbjct: 3 FCPLCSSMLVVKKQAIGNELS--CKMCGYLYAISEEISRTVGMTPKKSEGFVDEDESLKF 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V K C +C + F+E+QTRSADEP T+F+KC++C W+E Sbjct: 61 VTKCGKRC-ECGSEEVSFVELQTRSADEPMTIFYKCIRCKKVWKE 104 [152][TOP] >UniRef100_Q5DC18 SJCHGC03725 protein n=1 Tax=Schistosoma japonicum RepID=Q5DC18_SCHJA Length = 115 Score = 82.0 bits (201), Expect = 3e-14 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLG 223 + +CP C ++L++E + + L C Y + + + + + R + D V Sbjct: 3 VLFCPNCHSLLMIEESAHCYSLNCSAPMCSYRWFVTQPLVLEHKPRQDIRLRLEEDAVFS 62 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ED + + A+ D CPKCS+ +AYF+++QTRSADEP+T+ + C++C H W E Sbjct: 63 VEDEYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCMKCHHIWTE 114 [153][TOP] >UniRef100_Q7SF80 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa RepID=Q7SF80_NEUCR Length = 111 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 I +CP CAN+L++ + R C+ CPY + IDK I RK+ +DV GG AW Sbjct: 3 IVFCPFCANLLILSRADTGGN-RLECRTCPYEHPIDKPIYSRKNFPRKEKEDVFGGPGAW 61 Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349 N K C C+ ++A F ++Q RSADEP T F+K Sbjct: 62 DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYK 100 [154][TOP] >UniRef100_Q4TTY9 DNA-dependent RNA polymerase subunit M n=1 Tax=Thermococcus thioreducens RepID=Q4TTY9_9EURY Length = 110 Score = 79.0 bits (193), Expect = 2e-13 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229 +CP C N++L + K+ + C+ C Y D+K + + +++V+ ++ E Sbjct: 3 FCPKCGNLMLPD----RKKKVWVCRSCGYEEPFDEKKDREKTVIKQKVEHKPDEGIIVVE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K + T TCPKC AY+ E+QTR+ DEP+T+F++C +C H WR Sbjct: 59 QDVKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRCTKCGHTWR 107 [155][TOP] >UniRef100_C5G9Y2 DNA-directed RNA polymerase III polypeptide n=1 Tax=Ajellomyces dermatitidis ER-3 RepID=C5G9Y2_AJEDR Length = 143 Score = 78.2 bits (191), Expect = 4e-13 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Frame = +2 Query: 125 RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK--CSYHQAYF 298 R+ C+ CPY Y +D+ + + RK+V DVLGG+D WKN CP C +AYF Sbjct: 24 RFECRTCPYQYVLDRTYYERTEMKRKEVADVLGGKDEWKNADSQGTQCPAEGCDGDRAYF 83 Query: 299 MEIQTRSADEPATLFFK 349 ++Q RSADEP T FFK Sbjct: 84 YQLQIRSADEPMTTFFK 100 [156][TOP] >UniRef100_Q9UYX7 Tfs archaeal transcription factor S n=1 Tax=Pyrococcus abyssi RepID=Q9UYX7_PYRAB Length = 110 Score = 78.2 bits (191), Expect = 4e-13 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223 M+ +CP C ++++ + K + C+ C Y I+ K + + K + V+ Sbjct: 1 MVKFCPKCGSIMIPD----KKRGVFVCRRCGYEEPINPEDAKAYKRTEEVKHKPDEGVIV 56 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 E + + TCPKC YH+A++ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 57 VEQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKCKRCGYVWR 107 [157][TOP] >UniRef100_O58397 110aa long hypothetical transcription-associated protein n=1 Tax=Pyrococcus horikoshii RepID=O58397_PYRHO Length = 110 Score = 78.2 bits (191), Expect = 4e-13 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223 M+ +CP C ++++ + K + C+ C Y I+ K + + K + V+ Sbjct: 1 MVKFCPRCGSIMIPD----KKRGVFVCRKCGYEEPINPEDAKAYRRTEEIKHKPDEGVIV 56 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 E + + TCPKC YH+A++ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 57 IEQDFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKCKRCGYVWR 107 [158][TOP] >UniRef100_Q56254 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus celer RepID=RPOM_THECE Length = 110 Score = 78.2 bits (191), Expect = 4e-13 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQV-----DDVLGGE 229 +CP C N++L + K + C+ C Y D++ + + +++V + ++ E Sbjct: 3 FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K + T TCPKC AY+ E+QTR+ DEP+T+F+KC +C H WR Sbjct: 59 QDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 107 [159][TOP] >UniRef100_B5IU63 Transcription factor S n=1 Tax=Thermococcus barophilus MP RepID=B5IU63_9EURY Length = 109 Score = 77.8 bits (190), Expect = 5e-13 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 3/110 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK---QVDDVLGG 226 M+ +CP C +++L + K + C+ C Y ++ + +K L +K +V+D+ Sbjct: 1 MVKFCPKCGSIMLPD----RKREVFVCRKCGYEEPLNPEAAKAYRLTQKVEHKVEDIPII 56 Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 E + K TCPKC +AY+ E+QTR+ DEP+T+F++C +C + WR Sbjct: 57 EQDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGYTWR 106 [160][TOP] >UniRef100_Q4U9E5 RNA polymerase small subunit, putative n=1 Tax=Theileria annulata RepID=Q4U9E5_THEAN Length = 108 Score = 77.4 bits (189), Expect = 7e-13 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232 M +CP C ++L E EY+ + C C Y + K K K+ L + Sbjct: 1 MSLFCPLCHSILYFESKEYNNS-SFSCLRCSYNLPVTKNYYKETVCTNVKEAGKTLFEAN 59 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +++ + A CP C+ +AYFM IQTRSADEP T FF C C RW+E Sbjct: 60 EFQHAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCTGCLKRWKE 108 [161][TOP] >UniRef100_Q5JF34 Archaeal transcription factor S n=1 Tax=Thermococcus kodakarensis RepID=Q5JF34_PYRKO Length = 110 Score = 77.0 bits (188), Expect = 9e-13 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-----DVLGGE 229 +CP C N++L + K + C+ C Y D++ + K+V+ +++ E Sbjct: 3 FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTKITKKVEHKPDEEIIVVE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K + T TCPKC AY+ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 59 QDLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGYTWR 107 [162][TOP] >UniRef100_C8V4B3 RNA polymerase III subunit C11, putative (AFU_orthologue; AFUA_1G06380) n=2 Tax=Emericella nidulans RepID=C8V4B3_EMENI Length = 108 Score = 75.9 bits (185), Expect = 2e-12 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 7/104 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + S + R+ C+ CPY Y +++ + P+ +K+V+ V G Sbjct: 3 LTFCPNCSNALTISRADPSPKYPLGINRFECRTCPYQYALEQAWFEKTPMKQKEVEAVFG 62 Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349 G+ ++N CP C+ +AYF ++Q RSADEP T F K Sbjct: 63 GKAEFENADSMATQCPAEGCNGDRAYFFQLQIRSADEPMTTFLK 106 [163][TOP] >UniRef100_Q4N244 Putative uncharacterized protein n=1 Tax=Theileria parva RepID=Q4N244_THEPA Length = 108 Score = 75.1 bits (183), Expect = 3e-12 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232 M +CP C ++L E +K + C C Y + K K K+ L + Sbjct: 1 MSLFCPLCHSILYFEQKPENKS-SFSCLRCTYNLPVTKDYHKETVCTNVKEAGKTLFEAN 59 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +K+ + A CP C+ +AYFM IQTRSADEP T FF C C RW+E Sbjct: 60 EFKHAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVCTACLKRWKE 108 [164][TOP] >UniRef100_B6YVY9 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YVY9_THEON Length = 110 Score = 74.3 bits (181), Expect = 6e-12 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229 +CP C N++L + K + C+ C Y D++ + ++V+ ++ E Sbjct: 3 FCPECGNLMLPD----RKRKVWVCRKCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 + K TCPKC +AY+ E+QTR+ DEP+T+F+KC +C H WR Sbjct: 59 QDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKCTKCGHVWR 107 [165][TOP] >UniRef100_A7ASV0 Transcription factor S-II protein, putative n=1 Tax=Babesia bovis RepID=A7ASV0_BABBO Length = 109 Score = 73.9 bits (180), Expect = 7e-12 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR--KQVDDVLGGE 229 M +CP C ++L + + C C Y I ++ K + K++ Sbjct: 1 MALFCPLCHSVLFFSCNP-PQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSV 59 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + +++ K A CP C +AYFM IQTRSADEP T FF C C HRW+E Sbjct: 60 NEFEHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109 [166][TOP] >UniRef100_C5A5N8 Transcription elongation factor S (TFS_arch) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A5N8_THEGJ Length = 110 Score = 73.9 bits (180), Expect = 7e-12 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229 +CP C N++L + K + C+ C Y D++ + ++V+ ++ E Sbjct: 3 FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K + T TCPKC AY+ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 59 QDLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGYVWR 107 [167][TOP] >UniRef100_B7R0T6 Transcription factor S n=1 Tax=Thermococcus sp. AM4 RepID=B7R0T6_9EURY Length = 110 Score = 73.6 bits (179), Expect = 1e-11 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229 +CP C N++L + K + C+ C Y D++ + ++V+ ++ E Sbjct: 3 FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHRPDEGIIVVE 58 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K + T TCPKC AY+ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 59 QDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGYVWR 107 [168][TOP] >UniRef100_C6A1Y3 DNA-directed RNA polymerase subunit m n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A1Y3_THESM Length = 108 Score = 73.2 bits (178), Expect = 1e-11 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK---QVDDVLGGEDA 235 +CP C N++L + K + C+ C Y +D + + + +K +D+ E Sbjct: 3 FCPKCGNIMLPD----KKRGVFVCRKCGYEEPLDLETASKYKITQKIKHDREDIPVIEQD 58 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 + K TCPKC +AY+ E+QTR+ DEP+T+F++C +C + WR Sbjct: 59 VATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGYTWR 105 [169][TOP] >UniRef100_B1L5R4 DNA-directed RNA polymerase, subunit M n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L5R4_KORCO Length = 108 Score = 72.4 bits (176), Expect = 2e-11 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK-ISKMAPLARKQVDDVLGGEDAWK 241 +CP C +L + + K L Y+C C Y K S++ + DV+ E++ K Sbjct: 2 FCPKCGTLLRPK--KAGKRLIYYCPSCGYESESPPKGNSQVITKVTSESGDVIIEEESEK 59 Query: 242 NVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A +A CPKC +AYF +QTR+ADEP T +KC +C + WRE Sbjct: 60 ISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKCTKCGYSWRE 106 [170][TOP] >UniRef100_C7P7U4 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P7U4_METFA Length = 108 Score = 71.6 bits (174), Expect = 4e-11 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 5/113 (4%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLA-----RKQVDDVL 220 M+ +CP C N++L K+ + C C Y + SK RK+ V+ Sbjct: 1 MVKFCPKCKNLML------PKDGKLKCVVCGYEEETGSEGSKEYEYKEHLENRKEKITVI 54 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 GE + + T CPKC +++AY+ QTR ADEP T F+KC +C H WRE Sbjct: 55 EGEGV-ETLPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106 [171][TOP] >UniRef100_UPI0000E47A79 PREDICTED: similar to POLR3K, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E47A79 Length = 65 Score = 70.1 bits (170), Expect = 1e-10 Identities = 33/64 (51%), Positives = 44/64 (68%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CPTCAN+L+VE E K LR+ C CPYV+N+ +K++ K+VDDVLGG AW+N Sbjct: 3 FCPTCANVLVVE--EGPKCLRFACNTCPYVHNVTRKLANRKYPRLKEVDDVLGGAAAWEN 60 Query: 245 VAKT 256 V T Sbjct: 61 VDST 64 [172][TOP] >UniRef100_C9RF97 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RF97_9EURY Length = 107 Score = 69.3 bits (168), Expect = 2e-10 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPY---VYNIDKKISKMAPLARKQVDDVLGG 226 M+ +CP C N++L K+ + C C Y + + L K+ + + Sbjct: 1 MVKFCPKCKNLML------PKDGKLKCAVCGYEEETAEVSNEYEYKEHLEPKKKEITVIE 54 Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++ + + T CPKC + +AY+ QTR ADEP T F+KC +C H WRE Sbjct: 55 DEGLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 105 [173][TOP] >UniRef100_C5U6A7 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus infernus ME RepID=C5U6A7_9EURY Length = 104 Score = 68.9 bits (167), Expect = 2e-10 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK-ISKMAPLARKQVDDVLGGED 232 M+ +CP C N+LL E + C C Y +K+ L RK+ V+ G + Sbjct: 1 MVKFCPKCNNVLL------PSEGKLKCPVCGYTEEGEKEGYEYKEKLKRKEEIAVIEGNE 54 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + + CPKC + +AY+ QTR ADEP T F++C +C H WRE Sbjct: 55 I-ETLPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRCKKCGHTWRE 102 [174][TOP] >UniRef100_Q07271 DNA-directed RNA polymerase subunit M n=1 Tax=Sulfolobus acidocaldarius RepID=RPOM_SULAC Length = 111 Score = 68.9 bits (167), Expect = 2e-10 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235 +CP C +M++ E K + Y C C Y+ ++K +K+ + + + VL + Sbjct: 3 FCPKCGSMMMPR-KENGKTV-YKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESDMP 60 Query: 236 WKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V T +CP C +AYF +QTRSADEPAT F+KC +C WRE Sbjct: 61 KTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109 [175][TOP] >UniRef100_Q58548 DNA-directed RNA polymerase subunit M n=1 Tax=Methanocaldococcus jannaschii RepID=RPOM_METJA Length = 108 Score = 68.6 bits (166), Expect = 3e-10 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK----MAPLARKQVDDVLG 223 M+ +CP C N++L K+ + C C Y + SK L K+ + Sbjct: 1 MVKFCPKCNNLML------PKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVI 54 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + + + T CPKC +++AY+ QTR ADEP T F+KC +C H WRE Sbjct: 55 ESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106 [176][TOP] >UniRef100_Q8U264 DNA-directed RNA polymerase subunit m n=1 Tax=Pyrococcus furiosus RepID=Q8U264_PYRFU Length = 110 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223 M+ +CP C ++++ + + + C+ C Y I+ K + + + + V+ Sbjct: 1 MVKFCPKCGSIMIPD----RRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVV 56 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 E + TCPKC +++A++ E+QTR+ DEP+T+F+KC +C + WR Sbjct: 57 IEQEVSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGYVWR 107 [177][TOP] >UniRef100_Q6L0M3 DNA-directed RNA polymerase subunit M n=1 Tax=Picrophilus torridus RepID=Q6L0M3_PICTO Length = 101 Score = 67.4 bits (163), Expect = 7e-10 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD--VLGGEDAW 238 +CP C +++ +Y C+ C Y + K K + K D ++ ++ Sbjct: 2 FCPKCGSLMT------PSNGKYICRSCGY--EMSKGAEKSTKIVNKSSDKEIIMIEKEVN 53 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ++A CPKC + AY++ QTRSADEP T F+ C C +RWRE Sbjct: 54 AEPLDSEAVCPKCHHVGAYYLLKQTRSADEPETKFYTCAACGYRWRE 100 [178][TOP] >UniRef100_B8D6L3 DNA-directed RNA polymerase subunit M n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D6L3_DESK1 Length = 75 Score = 67.0 bits (162), Expect = 9e-10 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = +2 Query: 257 DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + TCPKC +H+AY+ IQTR+ADEP T FFKC +C + WRE Sbjct: 33 EVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWRE 73 [179][TOP] >UniRef100_A5UMY1 DNA-directed RNA polymerase subunit M, RpoM n=2 Tax=Methanobrevibacter smithii RepID=A5UMY1_METS3 Length = 104 Score = 67.0 bits (162), Expect = 9e-10 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYV------YNIDKKISKMAPLARKQVDDVLGG 226 +CP C +MLL TE EL+ C + YN+++KI + + K G Sbjct: 3 FCPECGSMLLP--TE-DNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEK-------G 52 Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 ED + T A CP+C + +A + QTRSADE T FFKC++C H WRE Sbjct: 53 EDV-NTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFKCLKCGHTWRE 102 [180][TOP] >UniRef100_A0CQT2 Chromosome undetermined scaffold_24, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CQT2_PARTE Length = 104 Score = 66.6 bits (161), Expect = 1e-09 Identities = 35/106 (33%), Positives = 56/106 (52%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 + +CP C+N L +E E S R C C Y + + K++ K+ + + Sbjct: 1 MNFCPICSNFLSLE-NESSTGYRLKCPGCVYYHPL-KEMRLTKTFQSKEPAPITYPQ--- 55 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 +N TD C KC +A+F E QTR ADE +T+ F+C++C H+W+ Sbjct: 56 QNKQITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHKWK 101 [181][TOP] >UniRef100_A8MBQ2 Transcription termination factor Tfs n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBQ2_CALMQ Length = 115 Score = 66.6 bits (161), Expect = 1e-09 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED-- 232 I +CP C +++ + ++ + C C YV + S PL + V + E Sbjct: 7 IKFCPKCGSIM--KPYRNGNKVTWRCPKCGYV----EDSSTTVPLVERTVIEHKPDEKPV 60 Query: 233 ----AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A N+ K TCP+C ++AYF QTR+ADEP T F++C +C + WRE Sbjct: 61 VLTKANDNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRCTRCGYTWRE 113 [182][TOP] >UniRef100_C1BL61 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BL61_OSMMO Length = 90 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/64 (46%), Positives = 42/64 (65%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CPTC N+L+VE E K R+ C CPYV+NI +K++ K+VDDVLGG A Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAKA 58 Query: 236 WKNV 247 W+ + Sbjct: 59 WETL 62 [183][TOP] >UniRef100_Q2NE53 RpoM1 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NE53_METST Length = 105 Score = 66.2 bits (160), Expect = 2e-09 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGEDAW 238 +CP C +L + K+ ++ C C Y + ++ K +A K + D V+ + Sbjct: 3 FCPECGKVL------FPKDGKFTCDACGYEKGVTEESKKQYEVAEKVDKEDTVIVTDGNV 56 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K + CPKC A++ QTRSADE T FF+C +C + WRE Sbjct: 57 KTLPTIKVICPKCGNKLAFWWLQQTRSADESETRFFRCTECDYTWRE 103 [184][TOP] >UniRef100_A6UTI3 Transcription termination factor Tfs n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UTI3_META3 Length = 103 Score = 66.2 bits (160), Expect = 2e-09 Identities = 35/108 (32%), Positives = 51/108 (47%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M+ +CP C N++L KE C C + ++K S + +++ ED Sbjct: 1 MVKFCPKCNNIML------PKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDV 54 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + T CP C + Y+ QTR ADEP T F+KC +C H WRE Sbjct: 55 -NTLPTTRIECPNCGNMEVYWWLQQTRCADEPETRFYKCTKCGHTWRE 101 [185][TOP] >UniRef100_A3DM83 DNA-directed RNA polymerase, subunit M n=1 Tax=Staphylothermus marinus F1 RepID=A3DM83_STAMF Length = 104 Score = 66.2 bits (160), Expect = 2e-09 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +2 Query: 152 VYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADE 328 +Y I KI + K+ V+ E+ + + T + TCPKC YH+AY+ +QTR+ADE Sbjct: 30 LYRISVKIEH----SNKEKTVVVDEEERLRGLPITREVTCPKCGYHEAYYWIVQTRAADE 85 Query: 329 PATLFFKCVQCAHRWRE 379 P T F+KC +C + WRE Sbjct: 86 PPTRFYKCRRCGYVWRE 102 [186][TOP] >UniRef100_B5ID90 Transcription factor S n=1 Tax=Aciduliprofundum boonei T469 RepID=B5ID90_9EURY Length = 94 Score = 66.2 bits (160), Expect = 2e-09 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Frame = +2 Query: 110 YSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWKNVAKTDAT-CPKCSY 283 + K+ ++ C C Y IDK K ++ A+++ V+ E+ K + ++ CPKC + Sbjct: 2 HPKDGKWVCSSCGYEMPIDKDKSQEIVAEAKEKEMIVISSEEELKALPYDESVICPKCGH 61 Query: 284 HQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A++M QTR+ADEP T F+ C +C HRWRE Sbjct: 62 AGAHWMLQQTRAADEPETRFYICPKCGHRWRE 93 [187][TOP] >UniRef100_A8AAT2 DNA-directed RNA polymerase, subunit M n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8AAT2_IGNH4 Length = 113 Score = 65.9 bits (159), Expect = 2e-09 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-----KQVDDVLGGE 229 +CP C ++++ L+ C C Y + S + + K+ V+ Sbjct: 3 FCPKCGSLMVARRVGGKTILK--CMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNN 60 Query: 230 DAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + + KT D CPKC + +AY+ +QTR+ DEP T F+KC +C H WRE Sbjct: 61 IKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCTRCGHVWRE 111 [188][TOP] >UniRef100_Q9HJG3 Probable transcription-associated protein TFIIS n=1 Tax=Thermoplasma acidophilum RepID=Q9HJG3_THEAC Length = 100 Score = 65.5 bits (158), Expect = 3e-09 Identities = 32/105 (30%), Positives = 55/105 (52%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +++ +Y C C Y + +K+ K+ + + + ++ E+ Sbjct: 2 FCPKCGSLMT------PVNGKYVCPSCGYEISKNKETIKIVSKSADK-ETIMIKEEVSAE 54 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +DA CP+C + A ++ QTRSADEP T F+ C +C +RWRE Sbjct: 55 PLDSDAVCPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99 [189][TOP] >UniRef100_UPI0000164DC6 DNA-directed RNA polymerase subunit M n=1 Tax=Thermoplasma volcanium GSS1 RepID=UPI0000164DC6 Length = 100 Score = 64.7 bits (156), Expect = 4e-09 Identities = 33/105 (31%), Positives = 54/105 (51%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +++ RY C C Y + K+ K+ + + + ++ E+ Sbjct: 2 FCPKCGSLMT------PVNGRYVCPSCGYEVSKKKEDLKIVNKSNDK-ETIMIREEVSAE 54 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +DA CP+C + A ++ QTRSADEP T F+ C +C +RWRE Sbjct: 55 PLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99 [190][TOP] >UniRef100_Q5CYY8 RNA polymerase III subunit C11 (Fragment) n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CYY8_CRYPV Length = 62 Score = 64.7 bits (156), Expect = 4e-09 Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = +2 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 W ++ K A CPKCS+ +AYF ++Q RSADEP T F+ CV+C +W+E Sbjct: 14 WCSLFKLLAVCPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKE 61 [191][TOP] >UniRef100_Q97AQ6 Transcription factor [TFIIS/RPB9] n=1 Tax=Thermoplasma volcanium RepID=Q97AQ6_THEVO Length = 106 Score = 64.7 bits (156), Expect = 4e-09 Identities = 33/105 (31%), Positives = 54/105 (51%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C +++ RY C C Y + K+ K+ + + + ++ E+ Sbjct: 8 FCPKCGSLMT------PVNGRYVCPSCGYEVSKKKEDLKIVNKSNDK-ETIMIREEVSAE 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +DA CP+C + A ++ QTRSADEP T F+ C +C +RWRE Sbjct: 61 PLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105 [192][TOP] >UniRef100_C1BNL8 DNA-directed RNA polymerase subunit n=1 Tax=Caligus rogercresseyi RepID=C1BNL8_9MAXI Length = 127 Score = 63.9 bits (154), Expect = 8e-09 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 16 IRFCLECNNMLYPKEDKENKALMYACRNCDYKQLADNNCIYVNKIMHEVDEVTNIVSDVI 75 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 G ++ D CPKC + +A F + ++R AD+ L++ C QCAHRW E Sbjct: 76 GDPTLPRS---EDHPCPKCKHKEAVFFQSESRKADDEMRLYYVCTYPQCAHRWTE 127 [193][TOP] >UniRef100_A8WJ33 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJ33_CAEBR Length = 315 Score = 63.9 bits (154), Expect = 8e-09 Identities = 25/40 (62%), Positives = 33/40 (82%), Gaps = 2/40 (5%) Frame = +2 Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 CP CS+ +AYFM++QTRSADEP T+F++C CAHRW+E Sbjct: 276 CPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 315 [194][TOP] >UniRef100_A6SAU7 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SAU7_BOTFB Length = 186 Score = 63.9 bits (154), Expect = 8e-09 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 14/109 (12%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKEL------------RYFCQCCPYVYNIDKKISKMAPLARKQV 208 +CP+C+N+L V +T +S R C CPY Y + + I R++ Sbjct: 10 FCPSCSNILTVSVTPHSSTPTPTSTQDLTGANRLECLTCPYQYILTRSIFDRKTFVREEK 69 Query: 209 DDVLGGEDAWKNVAKTDATC--PKCSYHQAYFMEIQTRSADEPATLFFK 349 +DV GG+DAW N C +C+ A +Q RSADEP T F++ Sbjct: 70 EDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYR 118 [195][TOP] >UniRef100_Q9YEZ3 Archaeal transcription factor S n=1 Tax=Aeropyrum pernix RepID=Q9YEZ3_AERPE Length = 118 Score = 63.9 bits (154), Expect = 8e-09 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKE--LRYF--CQCCPYVYNI---DKKISKMAPLARKQVDDV 217 I +CP C +++ Y K RY C+ C Y D + +M K D Sbjct: 5 IKFCPRCGSIM------YPKRDGARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDK 58 Query: 218 LGGED----AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + D V K TCPKC + + YF +QTRSADEP T F++C +C + WRE Sbjct: 59 IVVIDDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116 [196][TOP] >UniRef100_B9ZDH0 Transcription termination factor Tfs n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZDH0_NATMA Length = 107 Score = 63.5 bits (153), Expect = 1e-08 Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +C C +M++ E + R C C D++ Q DD + D N Sbjct: 3 FCDDCGSMMMAE------DDRMVCTNCGAASERDREREDEFVTTESQTDDEVIESDENAN 56 Query: 245 VA----KTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 TD C +C +A++ QT SADEP T FFKC +C HRWR Sbjct: 57 FEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHRWR 104 [197][TOP] >UniRef100_UPI00006CB60F hypothetical protein TTHERM_00444250 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB60F Length = 108 Score = 63.2 bits (152), Expect = 1e-08 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238 + +CP CAN L+++ R+ C+ C Y Y + KKI + +R DD + Sbjct: 1 MNFCPLCANALIIQ--NVGGNNRFSCRTCTYFYPLLKKIETVT-YSRMVKDDTIHDISLQ 57 Query: 239 KNVAKTDAT--CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K +TD CP C AY Q RS DE T + C C+H W++ Sbjct: 58 KESLQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKNCSHTWKD 106 [198][TOP] >UniRef100_B4JS70 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi RepID=B4JS70_DROGR Length = 129 Score = 62.4 bits (150), Expect = 2e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKDNKTLMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [199][TOP] >UniRef100_A3MUU7 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum calidifontis JCM 11548 RepID=A3MUU7_PYRCJ Length = 124 Score = 62.4 bits (150), Expect = 2e-08 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%) Frame = +2 Query: 20 RGTSFRQSERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKM 184 RGTS R +CP ++L+ LR C C Y + +++ SK Sbjct: 11 RGTSVR---------FCPNDKSLLIPVKKGDRTVLR--CPKCGYEEEVSQEVRGRYQSKS 59 Query: 185 APLARKQVDDVLGGEDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQC 361 A + Q+ V D N+ K CPKC + +AYF QTR+ADEP T F+KC +C Sbjct: 60 AVENKNQLIVVA---DNAVNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKCTKC 116 Query: 362 AHRWRE 379 H WRE Sbjct: 117 GHVWRE 122 [200][TOP] >UniRef100_UPI0000D56411 PREDICTED: similar to GA17176-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56411 Length = 130 Score = 61.6 bits (148), Expect = 4e-08 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232 I +C C NML + + +K L Y C+ C Y + D K + + + ++ ++ Sbjct: 19 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQHADSKCIYVNKIMHEIDELTHIVPDVI 78 Query: 233 AWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + + +T D CP+C++ +A F + QTR A+E L++ C CAHRW E Sbjct: 79 SDPTLPRTEDHHCPECNHREAVFFQAQTRRAEEEMRLYYVCTNPMCAHRWTE 130 [201][TOP] >UniRef100_UPI000038E298 DNA-directed RNA polymerase subunit M n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E298 Length = 101 Score = 61.6 bits (148), Expect = 4e-08 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%) Frame = +2 Query: 125 RYFCQCC----PYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQA 292 +Y C C P D+KI ++ + K++ ++ ++ +DA CP C + A Sbjct: 16 KYICNSCGNEIPKAGTADQKI--ISKSSDKEI--IMVAKEVNAEPLDSDAVCPVCHHTGA 71 Query: 293 YFMEIQTRSADEPATLFFKCVQCAHRWRE 379 Y++ QTRSADEP T F+ C C HRWRE Sbjct: 72 YYLLKQTRSADEPETKFYTCESCGHRWRE 100 [202][TOP] >UniRef100_P36958 DNA-directed RNA polymerase II subunit RPB9 n=6 Tax=melanogaster subgroup RepID=RPB9_DROME Length = 129 Score = 61.6 bits (148), Expect = 4e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [203][TOP] >UniRef100_B4NAN1 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila willistoni RepID=B4NAN1_DROWI Length = 129 Score = 61.6 bits (148), Expect = 4e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [204][TOP] >UniRef100_B4MBD3 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila virilis RepID=B4MBD3_DROVI Length = 129 Score = 61.6 bits (148), Expect = 4e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKDNKILMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [205][TOP] >UniRef100_Q299B2 DNA-directed RNA polymerase subunit n=2 Tax=pseudoobscura subgroup RepID=Q299B2_DROPS Length = 129 Score = 61.6 bits (148), Expect = 4e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [206][TOP] >UniRef100_B3LZX4 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila ananassae RepID=B3LZX4_DROAN Length = 129 Score = 61.2 bits (147), Expect = 5e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + +K L Y C+ C Y D KI V DV+ Sbjct: 18 IRFCQECNNMLYPKEDKDNKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + D CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 78 SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129 [207][TOP] >UniRef100_Q980K2 DNA-directed RNA polymerase, subunit M (RpoM-1) n=1 Tax=Sulfolobus solfataricus RepID=Q980K2_SULSO Length = 114 Score = 61.2 bits (147), Expect = 5e-08 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGG 226 ++ +CP C N ++V K + Y C C Y + + + + + + VL Sbjct: 3 VVKFCPKC-NSMMVPKKSNGKNV-YRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEE 60 Query: 227 EDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 E+ K CP C +AYF +QTR ADEP T F+KC +C WRE Sbjct: 61 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 112 [208][TOP] >UniRef100_A8TE75 Transcription termination factor Tfs n=1 Tax=Methanococcus voltae A3 RepID=A8TE75_METVO Length = 105 Score = 61.2 bits (147), Expect = 5e-08 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK--MAPLARKQVDDVLGGE 229 M+ +CP C N++L KE C C + +++ K ++ + DV E Sbjct: 1 MVEFCPKCNNIML------PKEGILKCVVCGFESSLENNKDKYELSEKIESKSQDVTVIE 54 Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + + CP C +AY+ QTR ADEP T F+KC +C+H WRE Sbjct: 55 NV-NTLPSIRIECPSCGNMEAYWWLQQTRCADEPETRFYKCKKCSHTWRE 103 [209][TOP] >UniRef100_Q8PX24 DNA-directed RNA polymerase subunit M n=1 Tax=Methanosarcina mazei RepID=Q8PX24_METMA Length = 107 Score = 60.8 bits (146), Expect = 6e-08 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD----VLG 223 ++ +C C +M+ + K+ Y C+ C I+ +++ ++DD VL Sbjct: 3 LMQFCTKCKSMM------FPKDGNYHCRKCGSTIPIESDAKNF--VSKAKIDDHEVVVLE 54 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 GE + T+A CP+C + A + Q RSADE T FFKC +C + WRE Sbjct: 55 GEQT-SGLPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWRE 105 [210][TOP] >UniRef100_A6RGN0 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RGN0_AJECN Length = 140 Score = 60.5 bits (145), Expect = 8e-08 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + S R+ C+ CPY Y +D+ + + RK+V DVLG Sbjct: 3 LTFCPNCSNALTISRADPSPRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVSDVLG 62 Query: 224 GEDAWKN 244 G+D WKN Sbjct: 63 GKDEWKN 69 [211][TOP] >UniRef100_Q5V537 DNA-directed RNA-polymerase subunit M n=1 Tax=Haloarcula marismortui RepID=Q5V537_HALMA Length = 107 Score = 60.5 bits (145), Expect = 8e-08 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +C C +M+ + E CQ C D+ + +Q DD L + N Sbjct: 3 FCDDCGSMMHADGDEM------VCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEGSN 56 Query: 245 V----AKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 D TC +C + +A++ QT SADEP T FFKC +C HRWRE Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105 [212][TOP] >UniRef100_A9A2X5 Transcription termination factor Tfs n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A2X5_NITMS Length = 105 Score = 60.5 bits (145), Expect = 8e-08 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG--GEDAW 238 +CP C V+L + + L C C Y ++K +K +Q + +L G + Sbjct: 3 FCPKCE----VKLKKGTSGLE--CSKCGYTEGAEEKQTKKTVETEEQEESILAFEGNEGE 56 Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 ++ C KC + +A + +QTRSADEP T F++C +C + WR Sbjct: 57 ESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTKCQYTWR 102 [213][TOP] >UniRef100_A4WLS3 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum arsenaticum DSM 13514 RepID=A4WLS3_PYRAR Length = 110 Score = 60.5 bits (145), Expect = 8e-08 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLGGE 229 +CP ++L+ + + + C C Y + + SKM + V V G E Sbjct: 3 FCPNDRSILVPK--KKGDKTVLVCPKCGYEEEASQDVKSRYQSKMTVENKNPVVVVAGNE 60 Query: 230 DAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N+ K CPKC + +AYF QTR+ADEP T F++C +C H WRE Sbjct: 61 ---VNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYRCTKCGHTWRE 108 [214][TOP] >UniRef100_A0RXH6 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS n=1 Tax=Cenarchaeum symbiosum RepID=A0RXH6_CENSY Length = 103 Score = 60.5 bits (145), Expect = 8e-08 Identities = 32/104 (30%), Positives = 49/104 (47%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP C + L C C Y + + +K P +VL G K Sbjct: 3 FCPKCEDRLR------KNGDASVCPKCGYTESAARGPTKAKPAEGTPEINVLDGPVDEKL 56 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 ++ C KC + +A + +QTRSADEP T F++C++C+H WR Sbjct: 57 LSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSHTWR 100 [215][TOP] >UniRef100_Q9P9I8 Archaeal transcription factor S n=1 Tax=Methanothermococcus thermolithotrophicus RepID=Q9P9I8_METTL Length = 105 Score = 60.5 bits (145), Expect = 8e-08 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYV---------YNIDKKISKMAPLARKQV 208 M+ +CP C N++L K R C C + Y + +KI A+KQ Sbjct: 1 MVEFCPKCNNIML------PKNGRLKCTVCGFEEELGNRTEEYELKEKIE-----AKKQE 49 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V+ D + T CP C +A + QTR ADEP T F+KC +C H WRE Sbjct: 50 VTVIEDVDT---LPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103 [216][TOP] >UniRef100_Q7Q4H0 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q4H0_ANOGA Length = 128 Score = 60.1 bits (144), Expect = 1e-07 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232 I +C C NML + + +K L Y C+ C Y D + + + ++ ++ Sbjct: 17 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76 Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + + +T+ CPKCS+ +A F + QTR A+E L++ C C HRW E Sbjct: 77 SDPTLPRTEEHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNSSCCHRWTE 128 [217][TOP] >UniRef100_B7PRG9 DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis RepID=B7PRG9_IXOSC Length = 129 Score = 60.1 bits (144), Expect = 1e-07 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220 I +C C NML + + ++ L Y C+ C Y D KI+ + V DV+ Sbjct: 18 IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQVADNNCIYVNKITHEVDELTQIVSDVV 77 Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 + D TCPKCS+ +A F + Q+R A++ L++ C C HRW E Sbjct: 78 HDPTLPRT---EDHTCPKCSHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129 [218][TOP] >UniRef100_A8XD45 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis briggsae RepID=A8XD45_CAEBR Length = 144 Score = 60.1 bits (144), Expect = 1e-07 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208 I +CP C NML + S+ L Y C+ C YV + +I ++ + + Sbjct: 35 IKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVADII 94 Query: 209 DDVLGGEDAWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 D + KT+ +CPKC+ +A F + QT+ A+E L++ C+ C RW E Sbjct: 95 HD--------PTLPKTEEHSCPKCTKRKAVFFQAQTKKAEEEMRLYYVCMYCQFRWTE 144 [219][TOP] >UniRef100_Q96YA8 112aa long hypothetical DNA-directed RNA polymerase subunit M n=1 Tax=Sulfolobus tokodaii RepID=Q96YA8_SULTO Length = 112 Score = 60.1 bits (144), Expect = 1e-07 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPY----VYNIDKKISKMAPLARKQVDDVLGGE- 229 +CP C ++++ + + + + Y C C Y + KI + + K+ V+ G+ Sbjct: 3 FCPKCGSIMVPK--KDNGKTMYKCPKCGYEEESTSSGSMKIKTVVKHSIKEKTLVVDGDA 60 Query: 230 -DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 A + K TCP C +AYF +QTR ADEP T F+KC +C WRE Sbjct: 61 PPAGAQITK-GVTCPACGNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 110 [220][TOP] >UniRef100_C3NFY6 Transcription termination factor Tfs n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NFY6_SULIN Length = 111 Score = 60.1 bits (144), Expect = 1e-07 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235 +CP C N ++V K + Y C C Y + + + + + + +L E+ Sbjct: 3 FCPKC-NSMMVPKKSNGKNI-YRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM 60 Query: 236 WKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K CP C +AYF +QTR ADEP T F+KC +C WRE Sbjct: 61 PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109 [221][TOP] >UniRef100_Q4QDH9 RNA polymerase III C11 subunit, putative n=1 Tax=Leishmania major RepID=Q4QDH9_LEIMA Length = 151 Score = 59.7 bits (143), Expect = 1e-07 Identities = 23/35 (65%), Positives = 30/35 (85%) Frame = +2 Query: 275 CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 C +AYF++IQ RSADEPAT+FFKCV+C H+WR+ Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQ 150 [222][TOP] >UniRef100_A8BBB2 DNA-directed RNA polymerase I 13.1 kDa polypeptide n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BBB2_GIALA Length = 103 Score = 59.7 bits (143), Expect = 1e-07 Identities = 35/107 (32%), Positives = 51/107 (47%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235 M ++C CA +L + Y +C C Y ++ + Q V E Sbjct: 1 MPSFCQECAT-ILETMGPYD-----YCALCQKKYERARQGDVVTSEVHLQTHYV-AQERM 53 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 +N D TCPKC + QAY+ +Q RSADE T+FF+C C H++R Sbjct: 54 TENRPVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKYR 100 [223][TOP] >UniRef100_A4HY64 RNA polymerase III C11 subunit, putative n=1 Tax=Leishmania infantum RepID=A4HY64_LEIIN Length = 151 Score = 59.7 bits (143), Expect = 1e-07 Identities = 23/35 (65%), Positives = 30/35 (85%) Frame = +2 Query: 275 CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 C +AYF++IQ RSADEPAT+FFKCV+C H+WR+ Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQ 150 [224][TOP] >UniRef100_B9LMI0 Transcription factor TFIIS n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LMI0_HALLT Length = 108 Score = 59.7 bits (143), Expect = 1e-07 Identities = 29/59 (49%), Positives = 36/59 (61%) Frame = +2 Query: 203 QVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 +V DV ED K + KT A CP+C +AY+ Q RSADE T FF C +C H+WRE Sbjct: 49 EVIDVSDAED--KGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105 [225][TOP] >UniRef100_C7NVK8 Transcription termination factor Tfs n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NVK8_HALUD Length = 107 Score = 59.7 bits (143), Expect = 1e-07 Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVL--GGEDAW 238 +C C +M+ + E CQ C Y D+ ++ + Q DD L EDA Sbjct: 3 FCEECGSMMHADGEEM------VCQSCGYREAKDQDLADDFVSTQDQTDDDLIETEEDAN 56 Query: 239 KNVAKT--DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 T D C +C + A++ QT SADEP T FFKC +C HRWR Sbjct: 57 FEGKPTADDVVCDECGHGVAWYTIKQTGSADEPPTRFFKCKECGHRWR 104 [226][TOP] >UniRef100_UPI00003C0AF7 PREDICTED: similar to RNA polymerase II 15kD subunit CG3284-PA n=1 Tax=Apis mellifera RepID=UPI00003C0AF7 Length = 130 Score = 59.3 bits (142), Expect = 2e-07 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208 I +C C NML + + +K L Y C+ C YV I +I ++ + + Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVADVI 78 Query: 209 DDVLGGEDAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 D + +T D CPKC++ +A F + QTR A+E L++ C C HRW E Sbjct: 79 SD--------PTLPRTEDHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 130 [227][TOP] >UniRef100_Q1HRD6 DNA-directed RNA polymerase subunit n=1 Tax=Aedes aegypti RepID=Q1HRD6_AEDAE Length = 128 Score = 59.3 bits (142), Expect = 2e-07 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232 I +C C NML + + +K L Y C+ C Y D + + + ++ ++ Sbjct: 17 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76 Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379 + + +T+ CPKC++ +A F + QTR A+E L++ C C HRW E Sbjct: 77 SDPTLPRTEEHACPKCTHREAVFFQAQTRRAEEEMRLYYVCTNPGCCHRWTE 128 [228][TOP] >UniRef100_B0W4J8 DNA-directed RNA polymerase subunit n=1 Tax=Culex quinquefasciatus RepID=B0W4J8_CULQU Length = 127 Score = 59.3 bits (142), Expect = 2e-07 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232 I +C C NML + + +K L Y C+ C Y D + + + ++ ++ Sbjct: 16 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 75 Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379 + + +T+ CPKC++ +A F + QTR A+E L++ C C HRW E Sbjct: 76 SDPTLPRTEEHACPKCAHREAVFFQAQTRRAEEEMRLYYVCTNPNCCHRWTE 127 [229][TOP] >UniRef100_C3MRD3 Transcription factor S n=5 Tax=Sulfolobus islandicus RepID=C3MRD3_SULIL Length = 111 Score = 59.3 bits (142), Expect = 2e-07 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235 +CP C +M++ + + R C C Y + + + + + + +L E+ Sbjct: 3 FCPKCNSMMVPKKSNGKNTYR--CTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM 60 Query: 236 WKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K CP C +AYF +QTR ADEP T F+KC +C WRE Sbjct: 61 PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109 [230][TOP] >UniRef100_Q9LU97 Similarity to transcription-associated zinc ribbon protein n=1 Tax=Arabidopsis thaliana RepID=Q9LU97_ARATH Length = 119 Score = 58.9 bits (141), Expect = 2e-07 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 8/124 (6%) Frame = +2 Query: 35 RQSERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYN----IDKKISKM--APLA 196 R+SE L +C C ML+++ T+Y++ C C N IDK+I+ A Sbjct: 5 RESEFL----FCNLCGTMLVLKSTKYAE-----CPHCKTTRNAKDIIDKEIAYTVSAEDI 55 Query: 197 RKQVDDVLGGE--DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHR 370 R+++ L GE A + K C KC + + + QTRSADE T ++ C CAHR Sbjct: 56 RRELGISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHR 115 Query: 371 WREG 382 + EG Sbjct: 116 FTEG 119 [231][TOP] >UniRef100_Q4DC35 DNA-directed RNA polymerase subunit n=1 Tax=Trypanosoma cruzi RepID=Q4DC35_TRYCR Length = 167 Score = 58.9 bits (141), Expect = 2e-07 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%) Frame = +2 Query: 8 RAVDRGTSFRQ--SERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI------ 163 R+ RG R+ S R + +CP C +LL+E + R+ C C YV I Sbjct: 27 RSRKRGPPRREQWSRRRSAMFFCPFCGTLLLIE--PHHPTNRFACSSCTYVAPIPSTHLL 84 Query: 164 ---------DKKISKMAPLARKQV----DDVLGGEDAWKNVAKTDATCPKCSYHQAYFME 304 +K + A + + ++V GG+ + C ++A++++ Sbjct: 85 TVNHSLLKFNKTVEDDANVKANGIKTKNEEVDGGQLITVRCQNDEKF---CDGNRAHYVQ 141 Query: 305 IQTRSADEPATLFFKCVQCAHRWRE 379 IQ RSADEPAT FFKC++C +W++ Sbjct: 142 IQMRSADEPATTFFKCLKCGFQWKQ 166 [232][TOP] >UniRef100_C4JZF5 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JZF5_UNCRE Length = 116 Score = 58.9 bits (141), Expect = 2e-07 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223 +T+CP C+N L + + + R+ C+ CPY Y +D+ + + RK+V DV+G Sbjct: 3 LTFCPNCSNALTISRGPSTSQYPLGVNRFECRTCPYQYILDRTYFERTEMKRKEVADVMG 62 Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEP 331 G+D WKN + S + + + +S +P Sbjct: 63 GKDEWKNADNMRVHYLRGSLERKLISDFEPKSKPQP 98 [233][TOP] >UniRef100_A6UQ74 Transcription termination factor Tfs n=1 Tax=Methanococcus vannielii SB RepID=A6UQ74_METVS Length = 105 Score = 58.9 bits (141), Expect = 2e-07 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Frame = +2 Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYV---------YNIDKKISKMAPLARKQV 208 M+ +CP C N++L K + C C + Y + +KI +KQ Sbjct: 1 MVEFCPKCNNIML------PKNGKLKCVVCKHEEDIGDANKSYELKEKIE-----TKKQE 49 Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V+ D + T CP C +A++ QTR ADEP T F+KC +C+H WRE Sbjct: 50 VTVIENIDT---MPITRIECPSCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103 [234][TOP] >UniRef100_O27369 DNA-directed RNA polymerase subunit M n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RPOM_METTH Length = 104 Score = 58.9 bits (141), Expect = 2e-07 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKIS---KMAPLARKQVDDVLGGEDA 235 +CP C ++ + E ++ CQC Y +I K+ +++ + + G+D Sbjct: 3 FCPKCGAVM------FPSEGKFKCQC-GYEKDITDKLKDKYRVSEEVEAKETIIFTGDDV 55 Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + T CPKC +A++ QTR ADE T FF+C +C H WRE Sbjct: 56 -NTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102 [235][TOP] >UniRef100_O29033 DNA-directed RNA polymerase subunit M n=1 Tax=Archaeoglobus fulgidus RepID=RPOM_ARCFU Length = 103 Score = 58.9 bits (141), Expect = 2e-07 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241 +CP C ++++ + + C+ C Y D + + R + D V+ GE+ K Sbjct: 3 FCPKCKSLMIYQGD------KLVCRKCGYEKEADDSEELVIKVERNKEDVPVIEGENL-K 55 Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + T A CP C +++A++ Q R+ADE FF+C +C WRE Sbjct: 56 TLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101 [236][TOP] >UniRef100_Q387Z6 RNA polymerase III C11 subunit, putative n=2 Tax=Trypanosoma brucei RepID=Q387Z6_9TRYP Length = 126 Score = 58.2 bits (139), Expect = 4e-07 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 20/125 (16%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK----ISKMAPLARKQVDD--VLGG 226 +CP C +LL+E R+ C C YV I + I+ K VDD G Sbjct: 3 FCPFCGTLLLIEPAYPCN--RFSCSSCRYVVPIQSRRPLTINHSFLKYNKVVDDDDEKGS 60 Query: 227 EDAWKNVAKTDATCP--------------KCSYHQAYFMEIQTRSADEPATLFFKCVQCA 364 + K K + +C +A++++IQ RSADEPAT FFKC++C Sbjct: 61 SNTVKRGVKEEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCLKCG 120 Query: 365 HRWRE 379 +W++ Sbjct: 121 FQWKQ 125 [237][TOP] >UniRef100_Q8ZTX9 DNA-directed RNA polymerase subunit M n=1 Tax=Pyrobaculum aerophilum RepID=Q8ZTX9_PYRAE Length = 110 Score = 58.2 bits (139), Expect = 4e-07 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK--MAPLARKQVDDVLGGEDAW 238 +CP ++L+ LR C C Y + + + + A + + V+ D Sbjct: 3 FCPNDKSLLIPVRKGNVTVLR--CPKCGYEEEVSQDVKNRYQSKTAVESRNSVIVVADTT 60 Query: 239 KNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N+ K CPKC + +AY QTR+ADEP T F++C +C + WRE Sbjct: 61 PNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108 [238][TOP] >UniRef100_Q6LXC3 Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit n=1 Tax=Methanococcus maripaludis RepID=Q6LXC3_METMP Length = 105 Score = 58.2 bits (139), Expect = 4e-07 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214 M+ +CP C N++L + + ++ +EL Q Y + +KI ++KQ Sbjct: 1 MVEFCPKCNNIMLPKGGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51 Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V+ D + T CP C +A++ QTR ADEP T F+KC +C+H WRE Sbjct: 52 VIENVDT---LPTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103 [239][TOP] >UniRef100_C1V4K5 DNA-directed RNA polymerase, subunit M n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V4K5_9EURY Length = 107 Score = 58.2 bits (139), Expect = 4e-07 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241 +C C +M+ ++++ + C C D ++ Q D DV+ E+ Sbjct: 3 FCDECGSMM------HNQDGQMVCSSCGATQEQDSDLASEFVSTEAQDDSDVIETEEGAN 56 Query: 242 NVAK---TDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376 K TD TC C + +A++ QT SADEP T FFKC C RWR Sbjct: 57 FEGKPTATDVTCEDCGHGEAWYTIKQTGSADEPPTRFFKCKNCGRRWR 104 [240][TOP] >UniRef100_B7XPV1 Putative uncharacterized protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XPV1_ENTBH Length = 95 Score = 57.8 bits (138), Expect = 5e-07 Identities = 21/38 (55%), Positives = 29/38 (76%) Frame = +2 Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 CP+C + +A F E+QTRSADE T+F++CV C H WR+ Sbjct: 57 CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEHNWRQ 94 [241][TOP] >UniRef100_B7XNQ4 Putative uncharacterized protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XNQ4_ENTBH Length = 89 Score = 57.8 bits (138), Expect = 5e-07 Identities = 21/38 (55%), Positives = 29/38 (76%) Frame = +2 Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 CP+C + +A F E+QTRSADE T+F++CV C H WR+ Sbjct: 51 CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEHNWRQ 88 [242][TOP] >UniRef100_Q46E40 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46E40_METBF Length = 104 Score = 57.8 bits (138), Expect = 5e-07 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD----VLGGED 232 +CP C +M+ + K + C+ C + I K + + +++ ++DD VL GE Sbjct: 3 FCPKCKSMM------FPKNGNFECRKCGNIIPI--KSDEKSFVSKDKIDDHEIVVLEGEQ 54 Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 + T CP+C + A + Q RSADE T FFKC +C WRE Sbjct: 55 I-SGLPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGFTWRE 102 [243][TOP] >UniRef100_A7I6R8 Transcription termination factor Tfs n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I6R8_METB6 Length = 104 Score = 57.8 bits (138), Expect = 5e-07 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235 +CP C ++L+ S + C+ C Y+ I+ KM + RK+ ++ ++ ED Sbjct: 2 FCPECKSLLM------SSGGQLKCRKCGYIRKIESN-DKMT-MERKRTENEITIVDDEDE 53 Query: 236 WKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N T CPKC + A++ Q R+ADE FF+C +C H WR+ Sbjct: 54 KVNTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRCTECGHTWRQ 102 [244][TOP] >UniRef100_A6VH15 Transcription termination factor Tfs n=2 Tax=Methanococcus maripaludis RepID=A6VH15_METM7 Length = 105 Score = 57.8 bits (138), Expect = 5e-07 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214 M+ +CP C N++L + + ++ +EL Q Y + +KI ++KQ Sbjct: 1 MVEFCPKCNNIMLPKAGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51 Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V+ D + T CP C +A++ QTR ADEP T F+KC +C+H WRE Sbjct: 52 VIENVDT---LPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103 [245][TOP] >UniRef100_A4FW95 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanococcus maripaludis C5 RepID=A4FW95_METM5 Length = 105 Score = 57.8 bits (138), Expect = 5e-07 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Frame = +2 Query: 56 MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214 M+ +CP C N++L + + ++ +EL Q Y + +KI ++KQ Sbjct: 1 MVEFCPKCNNIMLPKGGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51 Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 V+ D + T CP C +A++ QTR ADEP T F+KC +C+H WRE Sbjct: 52 VIENVDT---LPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103 [246][TOP] >UniRef100_C7P305 Transcription termination factor Tfs n=1 Tax=Halomicrobium mukohataei DSM 12286 RepID=C7P305_HALMD Length = 107 Score = 57.8 bits (138), Expect = 5e-07 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWK 241 +C C +M+ + E C+ C D + ++ A + DDV+ E+ Sbjct: 3 FCDDCGSMMHTDGDEM------VCKSCGSRVQKDADRAAEFVSTAAQSDDDVIETEEGAN 56 Query: 242 NVAKT---DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K D TC C + +A++ QT SADEP T FFKC C +RWRE Sbjct: 57 FEGKPTAEDVTCADCGHGKAWYTIKQTGSADEPPTRFFKCQDCGNRWRE 105 [247][TOP] >UniRef100_Q18FG8 DNA-directed RNA polymerase subunit M2 n=2 Tax=Halobacteriaceae RepID=Q18FG8_HALWD Length = 106 Score = 57.8 bits (138), Expect = 5e-07 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +C C +M+ + + C C Y + D I ++ +D++ E+ + Sbjct: 3 FCDECGSMMK------KRNEQMVCGSCGYQTDQDSAIGNFVSTQKQTDEDIIETEEGAEF 56 Query: 245 VAKT---DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 K + C +C + A++ QT SADEP T FFKC +C +RWR+ Sbjct: 57 EGKPTDDNVICDECEHTVAWYTIKQTGSADEPPTRFFKCKECGYRWRD 104 [248][TOP] >UniRef100_Q74N12 NEQ377 n=1 Tax=Nanoarchaeum equitans RepID=Q74N12_NANEQ Length = 106 Score = 57.4 bits (137), Expect = 7e-07 Identities = 27/105 (25%), Positives = 54/105 (51%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244 +CP ++L+ + + + C C Y + + K ++++ + ++ + Sbjct: 3 FCPKDGSILIPK--KEGDKTYLVCPVCGYKKEVTSLVIKEEVKKKEELGKGIAEKETIYS 60 Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 AK CPKCS + + +QTR++DE T+F+KC++C + WRE Sbjct: 61 KAK-GVKCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGYTWRE 104 [249][TOP] >UniRef100_B1YAF4 Transcription termination factor Tfs n=1 Tax=Thermoproteus neutrophilus V24Sta RepID=B1YAF4_THENV Length = 110 Score = 57.4 bits (137), Expect = 7e-07 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Frame = +2 Query: 65 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNI--DKKISKMAPLARKQVDDVLGGEDAW 238 +CP ++L+ LR C C Y D K + A + + V+ D Sbjct: 3 FCPNDRSLLVPVKRGDKTVLR--CPKCGYEEEASGDVKSRYQSKAAVENKNPVIVVADNP 60 Query: 239 KNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379 N+ K CPKC + +AY QTR+ADEP T F++C +C H WRE Sbjct: 61 VNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGHTWRE 108 [250][TOP] >UniRef100_UPI00015B430F PREDICTED: similar to ENSANGP00000019703 n=1 Tax=Nasonia vitripennis RepID=UPI00015B430F Length = 131 Score = 57.0 bits (136), Expect = 9e-07 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Frame = +2 Query: 59 ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208 I +C C NML + + +K L Y C+ C YV I +I ++ + + Sbjct: 20 IKFCQECNNMLYPKEDKENKVLMYACRNCDFKTLADSSCIYVNKIMHEIDELTHIVADVI 79 Query: 209 DDVLGGEDAWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379 D + +T+ CPKC++ ++ F + QTR A+E L++ C C HRW E Sbjct: 80 SD--------PTLPRTEEHPCPKCNHRESVFFQAQTRRAEEEMRLYYVCTNAHCTHRWTE 131