AV388925 ( CM039f07_r )

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[1][TOP]
>UniRef100_A8I4N7 Predicted protein n=1 Tax=Chlamydomonas reinhardtii
           RepID=A8I4N7_CHLRE
          Length = 109

 Score =  238 bits (608), Expect = 2e-61
 Identities = 109/109 (100%), Positives = 109/109 (100%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA
Sbjct: 1   MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 60

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
           WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG
Sbjct: 61  WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 109

[2][TOP]
>UniRef100_A9SIZ2 DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens
           subsp. patens RepID=A9SIZ2_PHYPA
          Length = 110

 Score =  157 bits (398), Expect = 4e-37
 Identities = 70/107 (65%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTCAN+LLVE     + LRYFC  CPYVY +D+KISK   L +K+VDDVLGGEDAWKN
Sbjct: 3   FCPTCANLLLVENPSMGRPLRYFCPTCPYVYVVDRKISKKLKLKKKEVDDVLGGEDAWKN 62

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           V +T  TCP CSY QAYFM+IQ RSADEP T F+KC  + C HRW+E
Sbjct: 63  VDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKE 109

[3][TOP]
>UniRef100_C1MJC6 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MJC6_9CHLO
          Length = 113

 Score =  149 bits (377), Expect = 1e-34
 Identities = 67/113 (59%), Positives = 84/113 (74%), Gaps = 4/113 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELT----EYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           M+T+CP+CANMLLV       + S  L+  CQ CPY Y++ K +    P+ RK+VDDVLG
Sbjct: 1   MLTFCPSCANMLLVTTNAAGADASPCLKLICQTCPYAYDVTKTLRDDVPVTRKEVDDVLG 60

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
           G+DAWKNV KT ATCPKC + QAYFM+IQ RSADEP + FFKCV+C ++WREG
Sbjct: 61  GDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKCVKCGNQWREG 113

[4][TOP]
>UniRef100_C1DZH6 DNA-directed RNA polymerase subunit n=1 Tax=Micromonas sp. RCC299
           RepID=C1DZH6_9CHLO
          Length = 109

 Score =  146 bits (369), Expect = 9e-34
 Identities = 65/109 (59%), Positives = 82/109 (75%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+++CP CANMLLV+       L+ +CQ CPY + I + I     +ARKQVDDVLGG+DA
Sbjct: 1   MLSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITETIRDPIKIARKQVDDVLGGDDA 60

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
           WKNV KT ATCPKC + QAYFM+IQ RSADEP + F+KC +CA++WREG
Sbjct: 61  WKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWREG 109

[5][TOP]
>UniRef100_A7SWZ1 DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis
           RepID=A7SWZ1_NEMVE
          Length = 108

 Score =  137 bits (344), Expect = 7e-31
 Identities = 59/108 (54%), Positives = 78/108 (72%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+CAN+L+VE        R+ CQ CPYV+NI KK+S       K+VDDVLGG+ A
Sbjct: 1   MLLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIAKKVSSKKYPKLKEVDDVLGGKSA 60

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W+NV  T+  CPKC +++AYFM+IQTRSADEP T F+KC  C +RW+E
Sbjct: 61  WENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108

[6][TOP]
>UniRef100_Q8JH46 DNA-directed RNA polymerase subunit n=1 Tax=Sphoeroides nephelus
           RepID=Q8JH46_9PERC
          Length = 108

 Score =  134 bits (337), Expect = 5e-30
 Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K +R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  TCPKC + +AYFM+IQTRSADEP T F+KC   QC HRWRE
Sbjct: 59  WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108

[7][TOP]
>UniRef100_UPI000186DC84 DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186DC84
          Length = 108

 Score =  134 bits (336), Expect = 6e-30
 Identities = 61/110 (55%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTCAN+L VE  E  + LR+ C  CPY++NI +K+S       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCANVLGVE--EGERSLRFACHTCPYIFNIARKVSSRYYPRLKEVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T+  CPKCS+ +AYFM+IQTRSADEP T F+KC   +C HRWR+
Sbjct: 59  WENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108

[8][TOP]
>UniRef100_Q5FVV0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus (Silurana)
           tropicalis RepID=Q5FVV0_XENTR
          Length = 108

 Score =  134 bits (336), Expect = 6e-30
 Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+N+++K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNVNRKVTSRKYPKLKEVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  TCPKC + +AYFM+IQTRSADEP T F+KC  +QC HRWR+
Sbjct: 59  WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108

[9][TOP]
>UniRef100_Q01CB3 RNA polymerase III subunit C11 (ISS) n=1 Tax=Ostreococcus tauri
           RepID=Q01CB3_OSTTA
          Length = 117

 Score =  134 bits (336), Expect = 6e-30
 Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEY--------SKELRYFCQCCPYVYNIDKKISKMAPLARKQVD 211
           M+T+CPTCAN+LL+E               +R  C  CPY Y++   + +     RK VD
Sbjct: 1   MLTFCPTCANLLLIERESAVGTSSSGGGGGVRLRCAACPYAYDVVDGVRQRVKTTRKTVD 60

Query: 212 DVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
           DVLGG++AW+NV KT  TCP+C + +AYFM+IQ RSADEP ++F+KC +CAH+WREG
Sbjct: 61  DVLGGDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCCECAHQWREG 117

[10][TOP]
>UniRef100_Q6P7G0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus laevis
           RepID=Q6P7G0_XENLA
          Length = 108

 Score =  133 bits (334), Expect = 1e-29
 Identities = 61/110 (55%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+NI++K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNINRKVTSRKYPKLKEVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T  TCPKC++ +AYFM+IQTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGHRWRD 108

[11][TOP]
>UniRef100_Q4RHC2 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4RHC2_TETNG
          Length = 108

 Score =  133 bits (334), Expect = 1e-29
 Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K +R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  TCPKC + +AYFM+IQTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108

[12][TOP]
>UniRef100_A4RUS3 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RUS3_OSTLU
          Length = 120

 Score =  132 bits (332), Expect = 2e-29
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 11/120 (9%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKE-----------LRYFCQCCPYVYNIDKKISKMAPLARK 202
           M+T+CPTCAN+LL+E                  +R  C  CPY Y++   + +     +K
Sbjct: 1   MLTFCPTCANLLLLERGAADASTSGAGAGVGGAVRLRCASCPYAYDVVDGVKQRVDARKK 60

Query: 203 QVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
            VDDVLGG+DAW+NV KT ATCP C++ +AYFM+IQ RSADEP ++F+KCV+CA +WREG
Sbjct: 61  TVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWREG 120

[13][TOP]
>UniRef100_C3Y255 DNA-directed RNA polymerase subunit n=1 Tax=Branchiostoma floridae
           RepID=C3Y255_BRAFL
          Length = 108

 Score =  132 bits (331), Expect = 2e-29
 Identities = 61/110 (55%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTCAN+L+ E  E  K  R+ CQ CPY+YNI  KIS       K+VDDVLGG +A
Sbjct: 1   MLLFCPTCANLLVAE--EGEKCYRFGCQTCPYIYNITHKISFKKYPKLKEVDDVLGGPEA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W NV  T+  CPKC + +AYFM+IQTRSADEP T F+KC   +C HRW++
Sbjct: 59  WANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGHRWKD 108

[14][TOP]
>UniRef100_UPI0000018387 UPI0000018387 related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI0000018387
          Length = 108

 Score =  131 bits (329), Expect = 4e-29
 Identities = 59/110 (53%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  + +R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQRCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  TCPKC + +A+FM+IQTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108

[15][TOP]
>UniRef100_C3KJD5 DNA-directed RNA polymerase subunit n=1 Tax=Anoplopoma fimbria
           RepID=C3KJD5_9PERC
          Length = 108

 Score =  130 bits (328), Expect = 5e-29
 Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K +R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  TCPKC + +AYFM+IQTRSADEP T F+KC    C HRWR+
Sbjct: 59  WENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGHRWRD 108

[16][TOP]
>UniRef100_B3S471 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S471_TRIAD
          Length = 106

 Score =  130 bits (328), Expect = 5e-29
 Identities = 56/108 (51%), Positives = 77/108 (71%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP CAN L +E  +  + L + C  CPY+Y + K I+       KQVDD+LGG+ A
Sbjct: 1   MLFFCPNCANALYME--KQGECLVFLCHTCPYLYKVTKTIASRNYPKLKQVDDILGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W+NV  T+ATCPKC ++QA+FM+IQTRSADEP T+F+KC  C HRW++
Sbjct: 59  WENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCCSCGHRWKD 106

[17][TOP]
>UniRef100_Q6DGU0 DNA-directed RNA polymerase subunit n=1 Tax=Danio rerio
           RepID=Q6DGU0_DANRE
          Length = 108

 Score =  130 bits (327), Expect = 7e-29
 Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQRCFRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM+IQTRSADEP T F+KC  +QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108

[18][TOP]
>UniRef100_C1BS50 DNA-directed RNA polymerase III subunit RPC10 n=1
           Tax=Lepeophtheirus salmonis RepID=C1BS50_9MAXI
          Length = 108

 Score =  129 bits (324), Expect = 1e-28
 Identities = 56/108 (51%), Positives = 72/108 (66%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L V        +R+ C+ CPY  N+  ++S       K+VDDVLGG  A
Sbjct: 1   MLMFCPNCGNILGVVEGVTDSCMRFACETCPYKRNVVSRLSDRVYPKLKEVDDVLGGSAA 60

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W+NV  T+ TCP C +H+AYFM+IQTRSADEP T F+KCV C HRWRE
Sbjct: 61  WENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVSCGHRWRE 108

[19][TOP]
>UniRef100_C1BZC8 DNA-directed RNA polymerase subunit n=1 Tax=Esox lucius
           RepID=C1BZC8_ESOLU
          Length = 108

 Score =  128 bits (322), Expect = 3e-28
 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T   CPKC + +AYFM+IQTRSADEP T F+KC   +C HRWR+
Sbjct: 59  WENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGHRWRD 108

[20][TOP]
>UniRef100_UPI00015B545C PREDICTED: similar to MGC68582 protein n=1 Tax=Nasonia vitripennis
           RepID=UPI00015B545C
          Length = 108

 Score =  128 bits (321), Expect = 3e-28
 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L VE  E +  +R+ C  CPY+ NI++++S       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLHVE--EGTVSMRFACNTCPYISNINRRVSSRTYPKLKEVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T+  CPKCS  +AYFM+IQTRSADEP T F+KC   QC H WRE
Sbjct: 59  WENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCNPQCGHNWRE 108

[21][TOP]
>UniRef100_B7P467 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Ixodes
           scapularis RepID=B7P467_IXOSC
          Length = 109

 Score =  128 bits (321), Expect = 3e-28
 Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = +2

Query: 53  KMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED 232
           KM+ +CPTCAN+L+VE  +  +  R+ C  CPYV+NI  K+S       K VDDVLGG  
Sbjct: 1   KMLLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDVLGGAA 58

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           AW+NV  T+  CPKC + +AYFM+IQTRSADEP T F+KC    C H+WRE
Sbjct: 59  AWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109

[22][TOP]
>UniRef100_Q1RPU6 DNA-directed RNA polymerase subunit n=1 Tax=Ciona intestinalis
           RepID=Q1RPU6_CIOIN
          Length = 108

 Score =  127 bits (320), Expect = 4e-28
 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L VE  E ++  R+ C  CPYV+NI +KIS       K VDDVLGG  A
Sbjct: 1   MLLFCPTCGNLLTVE--EGNQCYRFACPTCPYVHNITQKISSKKFPKLKAVDDVLGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W+NV  T+  CPKC + +AYFM+IQTRSADEP T+F+KC    C H+WRE
Sbjct: 59  WENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108

[23][TOP]
>UniRef100_UPI0000E49DF0 PREDICTED: similar to POLR3K n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000E49DF0
          Length = 107

 Score =  127 bits (318), Expect = 7e-28
 Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTCAN+L+VE  E  K LR+ C  CPYV+N+ +K++       K+VDDVLGG  AW+N
Sbjct: 3   FCPTCANVLVVE--EGPKCLRFACNTCPYVHNVTRKLANRKYPRLKEVDDVLGGAAAWEN 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           V  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRW E
Sbjct: 61  VDSTAEKCPKCEHPRAYFMQMQTRSADEPMTTFYKCCYQQCGHRWNE 107

[24][TOP]
>UniRef100_B5XDQ5 DNA-directed RNA polymerase subunit n=2 Tax=Salmoninae
           RepID=B5XDQ5_SALSA
          Length = 108

 Score =  127 bits (318), Expect = 7e-28
 Identities = 58/110 (52%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +A+FM+IQTRSADEP T F+KC   +C HRWR+
Sbjct: 59  WENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 108

[25][TOP]
>UniRef100_Q17L91 DNA-directed RNA polymerase subunit n=1 Tax=Aedes aegypti
           RepID=Q17L91_AEDAE
          Length = 108

 Score =  125 bits (315), Expect = 2e-27
 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+LLVE  E +  LR+ C  CPY+  I +KIS       K+VD V+GG  A
Sbjct: 1   MLMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKLKEVDHVMGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W+NV  TDA CP C++++AYFM++QTRSADEP T F+KC    C H WRE
Sbjct: 59  WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNPTCGHNWRE 108

[26][TOP]
>UniRef100_B0X903 DNA-directed RNA polymerase subunit n=1 Tax=Culex quinquefasciatus
           RepID=B0X903_CULQU
          Length = 108

 Score =  125 bits (314), Expect = 2e-27
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+LLVE  E +  LR+ C  CPY+  I +KIS       K+VD V+GG  A
Sbjct: 1   MLMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKLKEVDHVMGGSAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W+NV  TDA CP C++++AYFM++QTRSADEP T F+KC    C H WR+
Sbjct: 59  WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANPVCGHNWRD 108

[27][TOP]
>UniRef100_Q6WCQ3 DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis
           RepID=Q6WCQ3_IXOSC
          Length = 108

 Score =  125 bits (313), Expect = 3e-27
 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTCAN+L+VE  +  +  R+ C  CPYV+NI  K+S       K VDDVLGG  A
Sbjct: 1   MLLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W+NV  T+  CPKC + +AYFM+IQTRSADEP T F+KC    C H+WR+
Sbjct: 59  WENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108

[28][TOP]
>UniRef100_Q5KEF1 RNA polymerase III smallest subunit, putative n=1
           Tax=Filobasidiella neoformans RepID=Q5KEF1_CRYNE
          Length = 132

 Score =  124 bits (311), Expect = 5e-27
 Identities = 55/105 (52%), Positives = 72/105 (68%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP CAN L +   E S +    C  CPY + I+++IS    L RK+VDDVLGG++AW N
Sbjct: 3   FCPYCANSLTIGDREDSTDK--VCPTCPYQFIIERQISMRTHLKRKEVDDVLGGKEAWAN 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V KTD  CPKC + +AYF ++Q RSADEP T F+KC +C H+WRE
Sbjct: 61  VDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105

[29][TOP]
>UniRef100_Q55P07 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
           RepID=Q55P07_CRYNE
          Length = 132

 Score =  124 bits (311), Expect = 5e-27
 Identities = 55/105 (52%), Positives = 72/105 (68%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP CAN L +   E S +    C  CPY + I+++IS    L RK+VDDVLGG++AW N
Sbjct: 3   FCPYCANSLTIGDREDSTDK--VCPTCPYQFIIERQISMRTHLKRKEVDDVLGGKEAWAN 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V KTD  CPKC + +AYF ++Q RSADEP T F+KC +C H+WRE
Sbjct: 61  VDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105

[30][TOP]
>UniRef100_B5X6F8 DNA-directed RNA polymerase subunit n=1 Tax=Salmo salar
           RepID=B5X6F8_SALSA
          Length = 108

 Score =  124 bits (310), Expect = 6e-27
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +A+FM+IQTRSADE  T F+KC   +C HRWR+
Sbjct: 59  WENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGHRWRD 108

[31][TOP]
>UniRef100_B3RF23 DNA-directed RNA polymerase subunit n=1 Tax=Sorex araneus
           RepID=B3RF23_SORAR
          Length = 108

 Score =  124 bits (310), Expect = 6e-27
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPSCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[32][TOP]
>UniRef100_UPI00005A1245 PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa
           polypeptide (RNA polymerase III C11 subunit) (HsC11p)
           (hRPC11) n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A1245
          Length = 132

 Score =  123 bits (309), Expect = 8e-27
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 25  MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 82

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  +CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 83  WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 132

[33][TOP]
>UniRef100_Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Homo sapiens
           RepID=RPC10_HUMAN
          Length = 108

 Score =  123 bits (309), Expect = 8e-27
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T  +CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[34][TOP]
>UniRef100_C1FXX2 DNA-directed RNA polymerase subunit n=1 Tax=Dasypus novemcinctus
           RepID=C1FXX2_DASNO
          Length = 108

 Score =  122 bits (307), Expect = 1e-26
 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTSRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[35][TOP]
>UniRef100_A8NJC4 DNA-directed RNA polymerase subunit n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NJC4_COPC7
          Length = 106

 Score =  122 bits (307), Expect = 1e-26
 Identities = 50/105 (47%), Positives = 77/105 (73%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTCAN+L++  ++ +   ++ C  CPY + I K+++    +  KQVDDVLGG++ WK+
Sbjct: 3   FCPTCANILVI--SQETGVNKWACNTCPYEFPITKQMTSRTRMQLKQVDDVLGGDEMWKH 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             +T A+CPKC++ +AYF ++Q RSADEP T F++CV CAH+WRE
Sbjct: 61  ADQTQASCPKCNFDKAYFYQLQIRSADEPMTTFYRCVNCAHQWRE 105

[36][TOP]
>UniRef100_Q9CQZ7 DNA-directed RNA polymerase III subunit RPC10 n=7 Tax=Eutheria
           RepID=RPC10_MOUSE
          Length = 108

 Score =  122 bits (307), Expect = 1e-26
 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[37][TOP]
>UniRef100_UPI00005828F8 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
           (RNA polymerase III subunit K). n=1 Tax=Bos taurus
           RepID=UPI00005828F8
          Length = 108

 Score =  122 bits (306), Expect = 2e-26
 Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+N+ +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[38][TOP]
>UniRef100_B8K127 DNA-directed RNA polymerase subunit n=1 Tax=Oryctolagus cuniculus
           RepID=B8K127_RABIT
          Length = 108

 Score =  122 bits (306), Expect = 2e-26
 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108

[39][TOP]
>UniRef100_B4ME99 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila virilis
           RepID=B4ME99_DROVI
          Length = 108

 Score =  121 bits (304), Expect = 3e-26
 Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CP++  I +KIS       K+VD VLGG  A
Sbjct: 1   MLFFCPSCGNILIIE--EDTSSHRFTCNTCPFISKIKRKISTKTYPRLKEVDHVLGGVAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC   QC H WR+
Sbjct: 59  WENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108

[40][TOP]
>UniRef100_B5G0B7 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata
           RepID=B5G0B7_TAEGU
          Length = 108

 Score =  120 bits (302), Expect = 5e-26
 Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L+ E  E  +  R+ C  CPYV N+ +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVTSRKYPRLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T   CPKC + +AYFM+IQTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRWRD 108

[41][TOP]
>UniRef100_B4MPJ2 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila willistoni
           RepID=B4MPJ2_DROWI
          Length = 108

 Score =  120 bits (302), Expect = 5e-26
 Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E    S  L   C  CPYV  I  KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNLLIIEEDTNSHHLS--CHTCPYVSKIRGKISTKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+++AYFM+IQTRSADEP T F+KC   QC H WR+
Sbjct: 59  WENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108

[42][TOP]
>UniRef100_B4KR43 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila mojavensis
           RepID=B4KR43_DROMO
          Length = 108

 Score =  120 bits (302), Expect = 5e-26
 Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CP++  I +KI+       K+VD VLGG  A
Sbjct: 1   MLFFCPSCGNILIIE--EDTSSHRFTCNTCPFISKIKRKITTKTYPRLKEVDHVLGGVAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC   QC H WR+
Sbjct: 59  WENVDSTDAECPSCSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108

[43][TOP]
>UniRef100_Q8BU05 DNA-directed RNA polymerase subunit n=1 Tax=Mus musculus
           RepID=Q8BU05_MOUSE
          Length = 107

 Score =  120 bits (301), Expect = 7e-26
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C N L+VE  E  +  R+ C  CPYV+NI +K++       K+VDDVLGG  AW+N
Sbjct: 3   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWEN 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           V  T   CPKC + +AYFM++QTRSADEP T F+KC   QC HRWR+
Sbjct: 61  VDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 107

[44][TOP]
>UniRef100_B0D7I7 DNA-directed RNA polymerase subunit n=1 Tax=Laccaria bicolor
           S238N-H82 RepID=B0D7I7_LACBS
          Length = 106

 Score =  120 bits (300), Expect = 9e-26
 Identities = 52/106 (49%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
 Frame = +2

Query: 65  YCPTCANMLLVEL-TEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241
           +CPTCAN+L++   T Y+K   + C  C Y + I K+++    L RKQVDDVLGG++ W 
Sbjct: 3   FCPTCANLLVISSETGYNK---WACNTCAYEFPISKQMTSRTRLVRKQVDDVLGGDEMWA 59

Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           +  +T A+C KC++ QAYF ++Q RSADEP T F++C  CAH+WRE
Sbjct: 60  HADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCTSCAHQWRE 105

[45][TOP]
>UniRef100_B4PA35 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila yakuba
           RepID=B4PA35_DROYA
          Length = 108

 Score =  119 bits (299), Expect = 1e-25
 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISAKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC   +C H WR+
Sbjct: 59  WENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108

[46][TOP]
>UniRef100_B5KFS3 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata
           RepID=B5KFS3_TAEGU
          Length = 108

 Score =  119 bits (297), Expect = 2e-25
 Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L+ E  E  +  R+ C  CPYV N+ +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVTSRKYPRLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  T   CPKC + +AYFM+ QTRSADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRWRD 108

[47][TOP]
>UniRef100_B3NJW4 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila erecta
           RepID=B3NJW4_DROER
          Length = 108

 Score =  118 bits (296), Expect = 3e-25
 Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISAKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+ +AYFM++QTRSADEP T F+KC   +C H WR+
Sbjct: 59  WENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKCCNHECNHTWRD 108

[48][TOP]
>UniRef100_A1ZBX4 DNA-directed RNA polymerase subunit n=2 Tax=melanogaster subgroup
           RepID=A1ZBX4_DROME
          Length = 108

 Score =  118 bits (295), Expect = 3e-25
 Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISTKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP C + +AYFM+IQTRSADEP T F+KC   +C H WR+
Sbjct: 59  WENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108

[49][TOP]
>UniRef100_Q6BMC8 DNA-directed RNA polymerase subunit n=1 Tax=Debaryomyces hansenii
           RepID=Q6BMC8_DEBHA
          Length = 111

 Score =  117 bits (294), Expect = 4e-25
 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP CANML++   +     R+FC  CPY + ID  ++     L+RK+VDDVLGGE 
Sbjct: 1   MLSFCPYCANMLIMAQKDDGCN-RFFCSTCPYEFKIDGFQMYDRKKLSRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C+H+WRE
Sbjct: 60  AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCSHQWRE 110

[50][TOP]
>UniRef100_C5M563 DNA-directed RNA polymerase subunit n=1 Tax=Candida tropicalis
           MYA-3404 RepID=C5M563_CANTT
          Length = 111

 Score =  117 bits (294), Expect = 4e-25
 Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+T+CP C+NMLL+  T      R++C  CPYV+ I   ++     L RK+VDDVLGGE 
Sbjct: 1   MLTFCPNCSNMLLIN-TGNDGLNRFYCSTCPYVFKISGLQMYDRKKLHRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C HRW+E
Sbjct: 60  TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110

[51][TOP]
>UniRef100_Q2M2S7 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Bos taurus
           RepID=RPC10_BOVIN
          Length = 108

 Score =  117 bits (294), Expect = 4e-25
 Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N L+VE  E  +  R+ C  CPYV+N+ +K++       K+VDD LGG  A
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKVTNRKYPKLKEVDDELGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
           W+NV  T   CPKC + +AYFM++QTR ADEP T F+KC   QC HRWR+
Sbjct: 59  WENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[52][TOP]
>UniRef100_UPI000151ABB6 hypothetical protein PGUG_01395 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151ABB6
          Length = 111

 Score =  117 bits (293), Expect = 6e-25
 Identities = 57/111 (51%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C+NMLLV L+E     R +C  CPY + I+  ++     L+RKQVDDVLGG+ 
Sbjct: 1   MLSFCPYCSNMLLVGLSEDGCN-RLYCTTCPYEFKINGLQMYDRKNLSRKQVDDVLGGDG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW+NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C H+WRE
Sbjct: 60  AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWRE 110

[53][TOP]
>UniRef100_C4YKX9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans
           RepID=C4YKX9_CANAL
          Length = 111

 Score =  117 bits (293), Expect = 6e-25
 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+T+CP C+NMLL+   +     R++C  CPY + I+  ++     L RKQVDDVLGGE 
Sbjct: 1   MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLNRKQVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C HRW+E
Sbjct: 60  TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110

[54][TOP]
>UniRef100_UPI0000D554AC PREDICTED: similar to POLR3K n=1 Tax=Tribolium castaneum
           RepID=UPI0000D554AC
          Length = 108

 Score =  117 bits (292), Expect = 8e-25
 Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L  + T     L + C+ CP  + I  KIS       K VDDVLGGEDA
Sbjct: 1   MVVFCPFCGNLLFAQQT--CGRLGFACRICPVSFPIRGKISNRTYFQVKSVDDVLGGEDA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           WKN   T  TCP+CS+  AYF+++QTRSADEP T F++C   +CAH WRE
Sbjct: 59  WKNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCNPECAHNWRE 108

[55][TOP]
>UniRef100_UPI00003BE0F5 hypothetical protein DEHA0F07216g n=1 Tax=Debaryomyces hansenii
           CBS767 RepID=UPI00003BE0F5
          Length = 111

 Score =  117 bits (292), Expect = 8e-25
 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP CANML++   +     R+FC  CPY + ID  ++     L+RK+VDDVLGGE 
Sbjct: 1   MLSFCPYCANMLIMAQKDDGCN-RFFCLTCPYEFKIDGFQMYDRKKLSRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C+H+WRE
Sbjct: 60  AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCSHQWRE 110

[56][TOP]
>UniRef100_Q28ZP6 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila
           pseudoobscura pseudoobscura RepID=Q28ZP6_DROPS
          Length = 335

 Score =  116 bits (291), Expect = 1e-24
 Identities = 57/118 (48%), Positives = 75/118 (63%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTDSHRFTCNTCPYISKITRKISTKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG*GVPAASTP 409
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC  C H   +   V    TP
Sbjct: 59  WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQHQTVEKTKTP 114

[57][TOP]
>UniRef100_B4J958 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi
           RepID=B4J958_DROGR
          Length = 108

 Score =  116 bits (291), Expect = 1e-24
 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CP++  I +KI+       K+VD VLGG  A
Sbjct: 1   MLFFCPSCGNILIIE--EDTSSHRFTCHTCPFISKIKRKITTKTFPRLKEVDHVLGGIAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC   QC + WR+
Sbjct: 59  WENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGNTWRD 108

[58][TOP]
>UniRef100_B4GGZ5 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila persimilis
           RepID=B4GGZ5_DROPE
          Length = 335

 Score =  116 bits (291), Expect = 1e-24
 Identities = 57/118 (48%), Positives = 75/118 (63%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTDSHRFTCNTCPYISKITRKISTKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG*GVPAASTP 409
           W+NV  TDA CP CS+ +AYFM+IQTRSADEP T F+KC  C H   +   V    TP
Sbjct: 59  WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQHQTVEKTKTP 114

[59][TOP]
>UniRef100_A8BG20 DNA-directed RNA polymerase subunit n=1 Tax=Giardia lamblia ATCC
           50803 RepID=A8BG20_GIALA
          Length = 105

 Score =  116 bits (291), Expect = 1e-24
 Identities = 48/105 (45%), Positives = 73/105 (69%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C N+LL+EL   S +++++C+ C Y Y +  +IS+   L RK VD VLGGE AW+ 
Sbjct: 3   FCPCCGNLLLIEL---SGDVQFYCKTCAYRYTLSGQISRSLTLTRKSVDPVLGGETAWQG 59

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             KT   CP C++  A+++++Q RS+DEP + F++C QCAH+WRE
Sbjct: 60  ADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104

[60][TOP]
>UniRef100_Q5A5N9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans
           RepID=Q5A5N9_CANAL
          Length = 111

 Score =  116 bits (290), Expect = 1e-24
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+T+CP C+NMLL+   +     R++C  CPY + I+  ++     L RK+VDDVLGGE 
Sbjct: 1   MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLNRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C HRW+E
Sbjct: 60  TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110

[61][TOP]
>UniRef100_B9WCW5 DNA-directed RNA polymerase subunit n=1 Tax=Candida dubliniensis
           CD36 RepID=B9WCW5_CANDC
          Length = 111

 Score =  116 bits (290), Expect = 1e-24
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+T+CP C+NMLL+   +     R++C  CPY + I+  ++     L RK+VDDVLGGE 
Sbjct: 1   MLTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKINGLQMYDRKKLHRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C HRW+E
Sbjct: 60  TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKE 110

[62][TOP]
>UniRef100_Q9N4B7 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis elegans
           RepID=Q9N4B7_CAEEL
          Length = 108

 Score =  115 bits (288), Expect = 2e-24
 Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+T+CP C  +L +E  E    +R+ C  CPYV  + + ++       K +DDVLGG  A
Sbjct: 1   MLTFCPECGCVLQIESGEQC--MRFSCPACPYVCPVTQTVTSRIYPKLKDIDDVLGGPGA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W N   TD TCP CS+ +AYFM++QTRSADEP+T+F++C    CAHRW++
Sbjct: 59  WANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108

[63][TOP]
>UniRef100_A5DDP4 DNA-directed RNA polymerase subunit n=1 Tax=Pichia guilliermondii
           RepID=A5DDP4_PICGU
          Length = 111

 Score =  115 bits (287), Expect = 3e-24
 Identities = 56/111 (50%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C+NMLLV  +E     R +C  CPY + I+  ++     L+RKQVDDVLGG+ 
Sbjct: 1   MLSFCPYCSNMLLVGSSEDGCN-RLYCTTCPYEFKINGLQMYDRKNLSRKQVDDVLGGDG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW+NV +T A CP   C   +AYF ++Q RSADEP T F+KCV+C H+WRE
Sbjct: 60  AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWRE 110

[64][TOP]
>UniRef100_C6LXC5 DNA-directed RNA polymerase subunit n=1 Tax=Giardia intestinalis
           ATCC 50581 RepID=C6LXC5_GIALA
          Length = 105

 Score =  114 bits (286), Expect = 4e-24
 Identities = 47/105 (44%), Positives = 73/105 (69%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C N+LL+EL   + +++++C+ C Y Y +  +IS+   L RK VD VLGGE AW+ 
Sbjct: 3   FCPCCGNLLLIEL---AGDVQFYCKTCSYRYTLSGQISRSLTLTRKSVDPVLGGETAWQG 59

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             KT   CP C + +A+++++Q RS+DEP + F++C QCAH+WRE
Sbjct: 60  ADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104

[65][TOP]
>UniRef100_A8XIZ3 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis briggsae
           RepID=A8XIZ3_CAEBR
          Length = 108

 Score =  114 bits (286), Expect = 4e-24
 Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+T+CP C  +L +E  E  ++  + C  CPYV  I   IS       K +DDVLGG  A
Sbjct: 1   MLTFCPECGCVLQIETGEQCQQ--FSCSACPYVCPIVATISSRIYPKLKDIDDVLGGPGA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+N   TD  CP CS+ +AYFM++QTRSADEP T+F++C    CAHRW+E
Sbjct: 59  WENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCANNSCAHRWKE 108

[66][TOP]
>UniRef100_A3LW94 DNA-directed RNA polymerase subunit n=1 Tax=Pichia stipitis
           RepID=A3LW94_PICST
          Length = 111

 Score =  114 bits (286), Expect = 4e-24
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C+NMLL+   +     R++C  CPY + I+   + +   L RK+VDDVLGG+ 
Sbjct: 1   MLSFCPNCSNMLLISAGDDGCN-RFYCPTCPYEFKINGLSMFERKKLYRKEVDDVLGGDG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   C  ++AYF ++Q RSADEP T F+KCV C H+W+E
Sbjct: 60  AWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKE 110

[67][TOP]
>UniRef100_Q70W34 DNA-directed RNA polymerase subunit n=1 Tax=Kluyveromyces lactis
           RepID=Q70W34_KLULA
          Length = 112

 Score =  113 bits (282), Expect = 1e-23
 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C NMLLV   + S   +  C  CPY + ID  ++     L RK+VDDVLGGE 
Sbjct: 1   MLSFCPLCNNMLLVSKAD-SGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   +C+  +AYF ++Q RSADEP T F+KCV C H+WRE
Sbjct: 60  AWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111

[68][TOP]
>UniRef100_B0ENS7 DNA-directed RNA polymerase III subunit RPC10, putative n=1
           Tax=Entamoeba dispar SAW760 RepID=B0ENS7_ENTDI
          Length = 107

 Score =  112 bits (281), Expect = 1e-23
 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M  +C  C N+L+VE      EL + C  CPY +  +KKI   + L RKQ+D VLG E+ 
Sbjct: 1   MTFFCANCGNLLVVER---GTELYFKCSTCPYKFTFNKKIVYESELKRKQIDAVLG-EEQ 56

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382
           WKN  KT+  C KC Y+ AYFM+IQ RSADEP T F+KC    C ++WR+G
Sbjct: 57  WKNAQKTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107

[69][TOP]
>UniRef100_A9QVW4 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis brenneri
           RepID=A9QVW4_CAEBE
          Length = 108

 Score =  112 bits (281), Expect = 1e-23
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+T+CP C   L +E  +     R+ C  CPYV  +   +S       K +DDVLGG  A
Sbjct: 1   MLTFCPECGCTLQIEQGDQCN--RFSCPACPYVCPVTHSVSSRIYPKLKDIDDVLGGPGA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           W+N   TD  CP CS+ +AYFM++QTRSADEP T+F++C    CAHRW+E
Sbjct: 59  WENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCANNACAHRWKE 108

[70][TOP]
>UniRef100_B3MIT9 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila ananassae
           RepID=B3MIT9_DROAN
          Length = 342

 Score =  112 bits (279), Expect = 2e-23
 Identities = 52/104 (50%), Positives = 72/104 (69%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KI+       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTSCHRFTCNTCPYISKIKRKITAKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAH 367
           W+NV  TDA CP+CS+ +AYFM++QTRSADEP T F+KC  C H
Sbjct: 59  WENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKC--CNH 100

[71][TOP]
>UniRef100_C4Y9I4 DNA-directed RNA polymerase subunit n=1 Tax=Clavispora lusitaniae
           ATCC 42720 RepID=C4Y9I4_CLAL4
          Length = 111

 Score =  112 bits (279), Expect = 2e-23
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C+NMLLV   E +   R +C  CPY + I   ++ +   L RK VDDVLGG+ 
Sbjct: 1   MLSFCPYCSNMLLVSQGEDNCN-RLYCPTCPYEFRISGFQMFERKMLPRKDVDDVLGGDG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   C   +AYF ++Q RSADEP T F+KC +C+H+WRE
Sbjct: 60  AWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKCTKCSHQWRE 110

[72][TOP]
>UniRef100_B5Y459 RNA polymerase C subunit 11 kDa n=1 Tax=Phaeodactylum tricornutum
           CCAP 1055/1 RepID=B5Y459_PHATR
          Length = 111

 Score =  110 bits (276), Expect = 5e-23
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELR---YFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           +CP    +L V++   +       ++C  CPY  +ID   +   P  RK VDD+LGG  A
Sbjct: 3   FCPLDGTLLQVQIRSGAVPAENSFFYCSTCPYSCSIDAPRTVKTPTKRKVVDDILGGAAA 62

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W+NV +T A CP C++++AYFM++Q RSADEP ++F+KCVQC+H+W +
Sbjct: 63  WENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKCVQCSHQWND 110

[73][TOP]
>UniRef100_C4M8P1 RNA polymerase III subunit, putative n=1 Tax=Entamoeba histolytica
           HM-1:IMSS RepID=C4M8P1_ENTHI
          Length = 107

 Score =  110 bits (276), Expect = 5e-23
 Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M  +C  C N+L+VE      EL + C  CPY +  +KKI   + L RKQ+D VLG E+ 
Sbjct: 1   MTFFCANCGNLLVVER---GTELYFKCNTCPYKFTFNKKIVYESELKRKQIDAVLG-EEQ 56

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382
           WKN  KT+  C KC ++ AYFM+IQ RSADEP T F+KC    C ++WR+G
Sbjct: 57  WKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107

[74][TOP]
>UniRef100_B6K8S3 DNA-directed RNA polymerase subunit n=3 Tax=Toxoplasma gondii
           RepID=B6K8S3_TOXGO
          Length = 106

 Score =  110 bits (274), Expect = 9e-23
 Identities = 51/108 (47%), Positives = 67/108 (62%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M  +CPTC NMLLV        +++ C+ CPYV+NI +K+++  PL  K+ D+ L     
Sbjct: 1   MALFCPTCHNMLLVR---QEVTMQFHCRTCPYVFNIKEKLTRKMPLTPKKADEPLDESQE 57

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
               AK  A+CPKCS+ +AYF EIQ RSADEP T F+ C  C  RWRE
Sbjct: 58  AARGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCNCRFRWRE 105

[75][TOP]
>UniRef100_Q750C6 DNA-directed RNA polymerase subunit n=1 Tax=Eremothecium gossypii
           RepID=Q750C6_ASHGO
          Length = 112

 Score =  107 bits (268), Expect = 5e-22
 Identities = 55/112 (49%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C NML V   + S   R  C  CPY + I+  +I     L RK+VDDVLGGE 
Sbjct: 1   MLSFCPYCNNMLPVSKGD-SGVYRLGCPSCPYEFPIEGVEIYDRRNLPRKEVDDVLGGEG 59

Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T   CP+   C   +AYF ++Q RSADEP T F+KCV C H+WRE
Sbjct: 60  AWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKCVTCGHKWRE 111

[76][TOP]
>UniRef100_Q6C866 DNA-directed RNA polymerase subunit n=1 Tax=Yarrowia lipolytica
           RepID=Q6C866_YARLI
          Length = 110

 Score =  107 bits (267), Expect = 6e-22
 Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI-------DKKISKMAPLARKQVDD 214
           M+T+CPTC NML   L+     +R+ C+ CPY Y +       D+K+     L +K+VD 
Sbjct: 1   MLTFCPTCTNMLT--LSTSGNGMRFECRTCPYEYYLQDGTIVYDRKV-----LEKKKVDS 53

Query: 215 VLGGEDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           VLGGE+AW+NV K   + CPKCS   AYF  +Q RSADEP T F +C  C H+WRE
Sbjct: 54  VLGGENAWENVDKDPGSQCPKCSNMGAYFYMLQIRSADEPMTKFCRCTACFHQWRE 109

[77][TOP]
>UniRef100_C4R616 DNA-directed RNA polymerase subunit n=1 Tax=Pichia pastoris GS115
           RepID=C4R616_PICPG
          Length = 111

 Score =  107 bits (266), Expect = 8e-22
 Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI-DKKISKMAPLARKQVDDVLGGED 232
           M+ +CP C NML V     S   R+ C  CPY + I   ++ +   L+RKQVDDVLGG  
Sbjct: 1   MLMFCPNCQNMLTVTKAADSIN-RFNCPTCPYEFPIVGMQMYERKDLSRKQVDDVLGGAG 59

Query: 233 AWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           AW NV +T A CP   C   +AYF ++Q RSADEP T F KC +C H+WRE
Sbjct: 60  AWDNVDQTGAQCPIDSCGGDKAYFFQLQIRSADEPMTTFLKCCKCGHQWRE 110

[78][TOP]
>UniRef100_Q0U901 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0U901_PHANO
          Length = 118

 Score =  106 bits (265), Expect = 1e-21
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
 Frame = +2

Query: 56  MITYCPTCANMLLVEL-------TEYSK-ELRYFCQCCPYVYNIDKKISKMAPLARKQVD 211
           M+ +CPTC+N+L V         TE +  E R+ C  CPY + I+K+  +   + +K+V+
Sbjct: 1   MLLFCPTCSNVLRVSKVPPGDPNTEMNVGENRFECLTCPYQFVINKRYFERKYMKKKEVE 60

Query: 212 DVLGGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           D+LGG+ AW NV KT   CP  KC   +AY+ ++Q RSADEP T F+KC +CA  WRE
Sbjct: 61  DILGGKGAWDNVDKTQVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKCTKCAKEWRE 118

[79][TOP]
>UniRef100_B4HQM8 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila sechellia
           RepID=B4HQM8_DROSE
          Length = 325

 Score =  106 bits (264), Expect = 1e-21
 Identities = 50/101 (49%), Positives = 68/101 (67%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+C N+L++E  E +   R+ C  CPY+  I +KIS       K+VD VLGG+ A
Sbjct: 1   MLFFCPSCGNILIIE--EDTNCHRFTCNTCPYISKIRRKISTKTFPRLKEVDHVLGGKAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ 358
           W+NV  TDA CP C + +AYFM+IQTRSADEP T F+  +Q
Sbjct: 59  WENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYNRMQ 99

[80][TOP]
>UniRef100_A8QFI6 DNA-directed RNA polymerase subunit n=1 Tax=Brugia malayi
           RepID=A8QFI6_BRUMA
          Length = 108

 Score =  106 bits (264), Expect = 1e-21
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C + L +E  E S   ++ C  CPYV  I K I        K +D+VLGG  A
Sbjct: 1   MLLFCPECGSSLQIE--EGSNCYQFACHNCPYVQPITKLIRSRHYPKLKDLDEVLGGPGA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           W+N   T+  CP+C+  +AYFM++QTRSADEP T+F++C   +CAHRW+E
Sbjct: 59  WENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108

[81][TOP]
>UniRef100_Q4P5F3 DNA-directed RNA polymerase subunit n=1 Tax=Ustilago maydis
           RepID=Q4P5F3_USTMA
          Length = 111

 Score =  106 bits (264), Expect = 1e-21
 Identities = 45/90 (50%), Positives = 66/90 (73%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTCAN L+++L ++    ++ C  CPY + I ++++    L RKQVDDV+GGE++WKN
Sbjct: 3   FCPTCANCLIIQLDDHGNN-KWSCHTCPYEFPIVRQMTTRQHLKRKQVDDVMGGEESWKN 61

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPA 334
           V  TDA CPKC   +A+FM++Q RSADEP+
Sbjct: 62  VDSTDAPCPKCENPKAFFMQLQIRSADEPS 91

[82][TOP]
>UniRef100_C0NUV3 DNA-directed RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
           RepID=C0NUV3_AJECG
          Length = 117

 Score =  106 bits (264), Expect = 1e-21
 Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   + S        R+ C+ CPY Y +D+   +   + RK+V DVLG
Sbjct: 3   LTFCPNCSNALTISRADPSPRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVSDVLG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G+D WKN       CP   C   +AYF ++Q RSADEP T FFKC  C  RWRE
Sbjct: 63  GKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKCTTCGARWRE 116

[83][TOP]
>UniRef100_UPI0000EB34E7 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III
           subunit C10) (DNA-directed RNA polymerase III subunit K)
           (RNA polymerase III subunit C11) (RPC11) (HsC11p)
           (hRPC11) (DNA-directed RNA polymerases III 12.5 kDa
           polypeptide). n=1 Tax=Canis lupus familiaris
           RepID=UPI0000EB34E7
          Length = 109

 Score =  105 bits (262), Expect = 2e-21
 Identities = 52/107 (48%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232
           M+ +CP C N L+VE  E  +  R+ C  CPYV+NI +K+       + K+VDDVLGG  
Sbjct: 1   MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVVTNRKYPKLKEVDDVLGGAA 58

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRW 373
           AW+NV  T  +CPKC + +AYFM++QTRSADEP T F+K     H W
Sbjct: 59  AWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYK---SCHSW 102

[84][TOP]
>UniRef100_Q2KF11 DNA-directed RNA polymerase subunit n=2 Tax=Magnaporthe grisea
           RepID=Q2KF11_MAGGR
          Length = 110

 Score =  105 bits (262), Expect = 2e-21
 Identities = 49/110 (44%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP+CAN+L V   E  K  R  C+ CPY + I++ +      ARK+ +DV GG  A
Sbjct: 1   MLLFCPSCANVLTVSAMETGKN-RLECRTCPYEFAINEPLFSRKEFARKEREDVFGGPGA 59

Query: 236 WKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W N  K    CP   C   +A F ++Q RSADEP T F+KC+ C HRWRE
Sbjct: 60  WDNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMTCGHRWRE 109

[85][TOP]
>UniRef100_C6T364 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6T364_SOYBN
          Length = 111

 Score =  104 bits (259), Expect = 5e-21
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238
           +CPTC NML  EL    +  R+FC  CPYV  I+ +  I +   L  K+++ +   ED  
Sbjct: 3   FCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFS-EDDM 61

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWREG 382
            N A T+ATCP C + +A F E QTRSAD PATLF+KC+  +C  +WREG
Sbjct: 62  TNAASTEATCPFCGHGKAAFKEFQTRSADGPATLFYKCLNNECKKQWREG 111

[86][TOP]
>UniRef100_C5K7H8 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC
           50983 RepID=C5K7H8_9ALVE
          Length = 594

 Score =  103 bits (257), Expect = 9e-21
 Identities = 44/102 (43%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           + +CPTC N+L+++    +  ++Y+C+ CPY++ I +K+++   L ++ V+DVLGG DAW
Sbjct: 360 VLFCPTCGNLLVLQAGHDT--MKYWCRTCPYLFPISEKLTQKEILHKEVVEDVLGGPDAW 417

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQ 358
           K+V +T+A CP   C  ++AYF ++Q RSADEP T F++CV+
Sbjct: 418 KDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVK 459

[87][TOP]
>UniRef100_B2VRT8 Putative uncharacterized protein n=1 Tax=Pyrenophora
           tritici-repentis Pt-1C-BFP RepID=B2VRT8_PYRTR
          Length = 108

 Score =  103 bits (257), Expect = 9e-21
 Identities = 45/93 (48%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
 Frame = +2

Query: 107 EYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCP--KCS 280
           +Y  + R+ C  CPY + I+ +  +   + +K VDDV+GG+DAW NV KT+  CP  KC 
Sbjct: 16  DYVDKNRFVCLTCPYQFVIEGRYFERKYMKKKDVDDVIGGKDAWANVDKTEVQCPNEKCR 75

Query: 281 YHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            H+AY+ ++Q RSADEP T F+KC QCA  WRE
Sbjct: 76  NHEAYWYQLQIRSADEPMTAFYKCTQCAKEWRE 108

[88][TOP]
>UniRef100_UPI0000ECAA73 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III
           subunit C10) (DNA-directed RNA polymerase III subunit K)
           (RNA polymerase III subunit C11) (RPC11) (HsC11p)
           (hRPC11) (DNA-directed RNA polymerases III 12.5 kDa
           polypeptide). n=1 Tax=Gallus gallus RepID=UPI0000ECAA73
          Length = 99

 Score =  103 bits (256), Expect = 1e-20
 Identities = 48/99 (48%), Positives = 63/99 (63%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L+ E  E  +  R+ C  CPYV N+ +K+S       K+VDDVLGG  A
Sbjct: 1   MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVSSRKYPRLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC 352
           W+NV  T   CPKC + +AYFM+IQTRS D  A  F+KC
Sbjct: 59  WENVDSTAEPCPKCEHSRAYFMQIQTRSPDSRANTFYKC 97

[89][TOP]
>UniRef100_B8CB14 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335
           RepID=B8CB14_THAPS
          Length = 113

 Score =  102 bits (255), Expect = 1e-20
 Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 6/111 (5%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELR-----YFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGG 226
           +CP    +L V     S         + C  CPY   I   +I K  P+ RK+VDD+LGG
Sbjct: 3   FCPLDGTLLQVITATSSASTSPSTNIFACTTCPYSQPITTPQIQKSFPI-RKKVDDILGG 61

Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           E AW+NV +T A CP CS+ +AYFM++Q RSADEP ++F+KCV+C+H+W +
Sbjct: 62  EKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKCVKCSHQWND 112

[90][TOP]
>UniRef100_C5L7A3 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC
           50983 RepID=C5L7A3_9ALVE
          Length = 327

 Score =  102 bits (255), Expect = 1e-20
 Identities = 46/108 (42%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           + +CPTC N+L+++    +  ++Y+C+ CPY++ I +K+++   L  K+V+DVLGG DAW
Sbjct: 4   VLFCPTCGNLLVLQAGHDT--MKYWCRTCPYLFPISEKLTQKEIL-HKEVEDVLGGPDAW 60

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
           K+V +T+A CP   C  ++AYF ++Q RSADEP T F++CV+   + R
Sbjct: 61  KDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVKSQEQTR 108

[91][TOP]
>UniRef100_C5DU35 DNA-directed RNA polymerase subunit n=1 Tax=Zygosaccharomyces
           rouxii CBS 732 RepID=C5DU35_ZYGRC
          Length = 110

 Score =  102 bits (254), Expect = 2e-20
 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C NMLL+  ++ S      C+ CPY + I+  ++     L RK+VDDVLGG  
Sbjct: 1   MLSFCPLCNNMLLIASSD-SGIYTLTCKSCPYEFPIEGIEVYDRKKLPRKEVDDVLGG-- 57

Query: 233 AWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T   CP   KC+   AYF ++Q RSADEP T FFKCV C +RW+E
Sbjct: 58  GWDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKCVNCGNRWKE 109

[92][TOP]
>UniRef100_Q04307 DNA-directed RNA polymerase III subunit RPC10 n=5 Tax=Saccharomyces
           cerevisiae RepID=RPC10_YEAST
          Length = 110

 Score =  102 bits (253), Expect = 3e-20
 Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP+C NMLL+   + S      C+ CPY + I+  +I     L RK+VDDVLGG  
Sbjct: 1   MLSFCPSCNNMLLITSGD-SGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG-- 57

Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T   CP    C    AYF ++Q RSADEP T F+KCV C HRW+E
Sbjct: 58  GWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109

[93][TOP]
>UniRef100_C5Y1A6 Putative uncharacterized protein Sb04g032090 n=1 Tax=Sorghum
           bicolor RepID=C5Y1A6_SORBI
          Length = 166

 Score =  101 bits (252), Expect = 3e-20
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
 Frame = +2

Query: 47  RLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGG 226
           R + + +CP C  +L ++    S  LR FC  CPYV  I  KI K A L +K+V+ +   
Sbjct: 53  RGRAMEFCPVCGMLLQIDPGTASHRLRLFCSVCPYVCPIQNKIVKKARLVKKEVEPIFST 112

Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
            D  K+  KT  TC +C++ +AYF ++Q RSADEP T  ++C   +C H WRE
Sbjct: 113 ADEMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 165

[94][TOP]
>UniRef100_UPI000023DFAF hypothetical protein FG08551.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023DFAF
          Length = 110

 Score =  101 bits (251), Expect = 4e-20
 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP CAN+L V LT  ++  R  C+ CP+ ++I + +       R + +DV GG  A
Sbjct: 1   MLLFCPHCANILTVSLTS-TRTNRLECRTCPFEHHITEPVFSRRLYERVEREDVFGGPGA 59

Query: 236 WKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W N  K  A CP   C   +A F ++Q RSADEP T FFKC+ C HRWRE
Sbjct: 60  WDNAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKCMSCGHRWRE 109

[95][TOP]
>UniRef100_Q6EU09 DNA-directed RNA polymerase subunit n=1 Tax=Oryza sativa Japonica
           Group RepID=Q6EU09_ORYSJ
          Length = 110

 Score =  101 bits (251), Expect = 4e-20
 Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C  +L ++       LR++C  CPYV  +  KI K A L +K+V+ +    DA KN
Sbjct: 3   FCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKNKIVKKARLVKKEVEPIFSDSDAMKN 62

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
             KT  TCP+C   +AY+ ++Q RSADEP + F+KC   +C   WRE
Sbjct: 63  APKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 109

[96][TOP]
>UniRef100_C5DE90 DNA-directed RNA polymerase subunit n=1 Tax=Lachancea
           thermotolerans CBS 6340 RepID=C5DE90_LACTC
          Length = 127

 Score =  101 bits (251), Expect = 4e-20
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
 Frame = +2

Query: 53  KMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGE 229
           KM+++CP C NML++   + S      C  CPY + I+  ++     L RK+VDDVLGG 
Sbjct: 17  KMLSFCPHCHNMLVISQAD-SGAYALQCGACPYAFPIEGVEVYDRKTLPRKEVDDVLGG- 74

Query: 230 DAWKNVAKTDATCP---KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             W NV +T   CP   +C   +AYF ++Q RSADEP T F+KCV C +RWRE
Sbjct: 75  -GWDNVDQTAVQCPNYDECGGERAYFFQLQIRSADEPMTTFYKCVSCGNRWRE 126

[97][TOP]
>UniRef100_A7TL36 DNA-directed RNA polymerase subunit n=1 Tax=Vanderwaltozyma
           polyspora DSM 70294 RepID=A7TL36_VANPO
          Length = 110

 Score =  101 bits (251), Expect = 4e-20
 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGED 232
           M+++CP C NMLLV  ++ S      C+ CPY + I+  +I     L RK++DDVLGG  
Sbjct: 1   MLSFCPLCNNMLLVATSD-SGIYNLSCRSCPYEFPIENVEIYDRKELERKEIDDVLGG-- 57

Query: 233 AWKNVAKTDATCPK---CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            W NV +T   CP    C+   AYF ++Q RSADEP T F+KCV C +RW+E
Sbjct: 58  GWDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKE 109

[98][TOP]
>UniRef100_C5FE71 DNA-directed RNA polymerase subunit n=1 Tax=Microsporum canis CBS
           113480 RepID=C5FE71_NANOT
          Length = 117

 Score =  100 bits (250), Expect = 6e-20
 Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +     +        R+ C+ CPY Y +D+   +   + RK+V DV+G
Sbjct: 3   LTFCPNCSNALTISKAPPTSRYPAGVNRFECRTCPYQYALDRTYYERTEMKRKEVADVMG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G+D WKN     A CP   C   +A+F ++Q RSADEP T F+KC  C  RWRE
Sbjct: 63  GKDEWKNADSMPAQCPAEGCEGDRAFFYQLQIRSADEPMTTFYKCSVCGTRWRE 116

[99][TOP]
>UniRef100_B6K2W2 DNA-directed RNA polymerase subunit n=1 Tax=Schizosaccharomyces
           japonicus yFS275 RepID=B6K2W2_SCHJY
          Length = 109

 Score =  100 bits (249), Expect = 7e-20
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTC N L+V + E      + C+ CPY + I   +      A+KQVDDVLGG++AW++
Sbjct: 3   FCPTCGNHLIVSVDENGTNT-FDCRTCPYRFPISILMYHRHEFAQKQVDDVLGGKEAWES 61

Query: 245 VAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             +TD  C    C   +AYF ++Q RSADEP + F++C +C ++WRE
Sbjct: 62  NQQTDIPCENKNCDNRRAYFFQLQIRSADEPMSTFYRCTECGYQWRE 108

[100][TOP]
>UniRef100_O13896 DNA-directed RNA polymerase III subunit RPC10 n=1
           Tax=Schizosaccharomyces pombe RepID=RPC10_SCHPO
          Length = 109

 Score =  100 bits (249), Expect = 7e-20
 Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTC N L+V + E  +   + C+ CPY + I   +      A+K+VDDVLGGE+A+++
Sbjct: 3   FCPTCGNHLIVAVDEEGRNA-FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFES 61

Query: 245 VAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             +T+ TC   KC  ++AYF ++Q RSADEP + F++C +C  +WRE
Sbjct: 62  NQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108

[101][TOP]
>UniRef100_B6AHL8 DNA-directed RNA polymerase III subunit RPC10, putative n=1
           Tax=Cryptosporidium muris RN66 RepID=B6AHL8_9CRYT
          Length = 106

 Score =  100 bits (248), Expect = 1e-19
 Identities = 45/108 (41%), Positives = 68/108 (62%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+LL+   E  +    FCQ CP++  ++K+I K+  L  K+ ++  G  + 
Sbjct: 1   MVQFCPHCHNILLIR--EIDERTALFCQTCPFIQKLNKQIVKVTELTPKKPEEAQGDMNE 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             + AK  A CPKCS  +AYF ++Q RSADEP T F+ CV+C H+W+E
Sbjct: 59  IAS-AKVMAVCPKCSNTEAYFFQLQIRSADEPMTSFYTCVKCEHKWKE 105

[102][TOP]
>UniRef100_C1GU30 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GU30_PARBA
          Length = 128

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           I+ CP C+N L +   E +        R+ C+ CPY Y +D+   +   + RK+V DVLG
Sbjct: 14  ISVCPNCSNALTISRAEPTSRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVADVLG 73

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G+D WKN       CP   C   +A+F ++Q RSADEP T F KC  C  RWRE
Sbjct: 74  GKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 127

[103][TOP]
>UniRef100_UPI0001986315 PREDICTED: similar to Os02g0672700 n=1 Tax=Vitis vinifera
           RepID=UPI0001986315
          Length = 111

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238
           +CPTC N L  EL    +  R+FC  CPYV +I+ K  I +   L +K+++ +   +D  
Sbjct: 3   FCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDDM- 61

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           KN   TDATCP C++ +A F ++QTRSADEP + F+ C+   C  +WRE
Sbjct: 62  KNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRE 110

[104][TOP]
>UniRef100_UPI0001792CC5 PREDICTED: similar to GA17233-PA n=1 Tax=Acyrthosiphon pisum
           RepID=UPI0001792CC5
          Length = 97

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 46/107 (42%), Positives = 63/107 (58%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           I +CP C+N+L   L EY  E+R  CQ                     ++D VLGG++AW
Sbjct: 14  IDFCPNCSNIL--HLDEYLGEMRQKCQ---------------------EIDSVLGGKNAW 50

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           +NV   D  C  C++ +AYF+++QTRSADEP T+F+KC  C HRWRE
Sbjct: 51  ENVDSIDVVCNSCNHGRAYFLQVQTRSADEPMTVFYKCCNCGHRWRE 97

[105][TOP]
>UniRef100_Q6MUM9 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa
           RepID=Q6MUM9_NEUCR
          Length = 112

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           I +CP CAN+L++   +     R  C+ CPY + IDK I       RK+ +DV GG  AW
Sbjct: 3   IVFCPFCANLLILSRADTGGN-RLECRTCPYEHPIDKPIYSRKNFPRKEKEDVFGGPGAW 61

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N  K    C    C+ ++A F ++Q RSADEP T F+KC+ C HRWR+
Sbjct: 62  DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKCMTCGHRWRD 110

[106][TOP]
>UniRef100_Q1E154 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
           RepID=Q1E154_COCIM
          Length = 117

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +     + +      R+ C+ CPY Y +D+   +   + RK+V DV+G
Sbjct: 3   LTFCPNCSNALTISKGPPTSQYPLGVNRFECRTCPYQYVLDRTYFERTEMKRKEVADVMG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G+D WKN       CP   C   +A+F ++Q RSADEP T F KC  C  RWRE
Sbjct: 63  GKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 116

[107][TOP]
>UniRef100_C5P9J4 DNA-directed RNA polymerase III subunit RPC10, putative n=1
           Tax=Coccidioides posadasii C735 delta SOWgp
           RepID=C5P9J4_COCP7
          Length = 117

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +     + +      R+ C+ CPY Y +D+   +   + RK+V DV+G
Sbjct: 3   LTFCPNCSNALTISRGPPTSQYPLGVNRFECRTCPYQYVLDRTYFERTEMKRKEVADVMG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G+D WKN       CP   C   +A+F ++Q RSADEP T F KC  C  RWRE
Sbjct: 63  GKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTTCGARWRE 116

[108][TOP]
>UniRef100_A2EBM6 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis G3
           RepID=A2EBM6_TRIVA
          Length = 109

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 46/107 (42%), Positives = 66/107 (61%)
 Frame = +2

Query: 62  TYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241
           ++CP C N+LLV+ +    +L+  C+ C +V     +  + APL    V  ++  +DA  
Sbjct: 5   SFCPACGNLLLVDTSGDRTQLK--CRACNFVMGFVGRTVQSAPLNPLDVKALITNDDAMS 62

Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
              KT A C KC +++A+F EIQ RSADEPATLFFKC +C + WREG
Sbjct: 63  FQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCCKCGNTWREG 109

[109][TOP]
>UniRef100_C9SAW1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Verticillium
           albo-atrum VaMs.102 RepID=C9SAW1_9PEZI
          Length = 110

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP CAN+L V     S   R  C+ CP+ + I   I       RK+ +DV GG   
Sbjct: 1   MLVFCPNCANILTVSAVG-SVRNRLECRTCPFEHPITAPIYSRREFERKEREDVFGGPGE 59

Query: 236 WKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W N  K  A CPK  C+  +A F ++Q RSADEP T FFKC+ C +RWRE
Sbjct: 60  WDNADKARAQCPKEGCNGDEAAFFQVQIRSADEPMTTFFKCMACGNRWRE 109

[110][TOP]
>UniRef100_B4FDM3 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FDM3_MAIZE
          Length = 110

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C  +L ++    S  LR FC  CPYV  I  KI K A L +K+V+ +    D  K+
Sbjct: 3   FCPVCGILLQIDPGTGSHRLRLFCPVCPYVCPILNKIVKKARLVKKEVEPISSTADEMKS 62

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
             KT  TC +C++ +AYF ++Q RSADEP T  ++C   +C H WRE
Sbjct: 63  APKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 109

[111][TOP]
>UniRef100_Q2H571 DNA-directed RNA polymerase subunit n=1 Tax=Chaetomium globosum
           RepID=Q2H571_CHAGB
          Length = 111

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           I +CP CAN+L++   +     R  C+ CPY + I+  I       RK+ +DV GG  AW
Sbjct: 3   ILFCPYCANLLILSRMDTGGN-RLECRTCPYQHAIEMPIYSRKNFPRKEKEDVFGGPGAW 61

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N  K    CP   C+  +A F ++Q RSADEP T F+KC+ C HRWRE
Sbjct: 62  DNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKCMTCGHRWRE 110

[112][TOP]
>UniRef100_UPI000187D2C9 hypothetical protein MPER_04676 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187D2C9
          Length = 92

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVEL-TEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWK 241
           +CPTCAN+L+V   T ++K   + C  CPY + I K+      L RK+VDDVLGG++ WK
Sbjct: 3   FCPTCANLLVVSSETGFNK---WACNTCPYEFPITKQARSSTKLKRKEVDDVLGGDEMWK 59

Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPAT 337
           +   T A+CP+C+  QAYF ++Q RSADEP T
Sbjct: 60  HADSTAASCPRCNNGQAYFYQLQIRSADEPMT 91

[113][TOP]
>UniRef100_Q98TK0 RNA polymerase III smallest subunit (Fragment) n=1 Tax=Platichthys
           flesus RepID=Q98TK0_PLAFE
          Length = 87

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = +2

Query: 83  NMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDA 262
           N+L+VE  E  K +R+ C  CPYV++I +K++       K+VDDVLGG  AW+NV  T  
Sbjct: 1   NVLIVE--EGQKCMRFACNTCPYVHSITRKVNYRKFPKLKEVDDVLGGAKAWENVDSTPE 58

Query: 263 TCPKCSYHQAYFMEIQTRSADEPATLFFK 349
           TCP C + +AYFM+IQTRSADEP T F++
Sbjct: 59  TCPTCGHLRAYFMQIQTRSADEPMTTFYR 87

[114][TOP]
>UniRef100_B9SBZ2 DNA-directed RNA polymerase III, putative n=1 Tax=Ricinus communis
           RepID=B9SBZ2_RICCO
          Length = 112

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGEDAW 238
           +CPTC  +L  EL    +  R++C  CPYV +I+   KI +   L +K+++ V   +D  
Sbjct: 3   FCPTCGVLLRYELPNMGQSARFYCSTCPYVCSIESRVKIKRKQQLIKKEIEPVFTLDDMM 62

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           K  ++T+ATCP C++ +A F  +Q RSADEPAT F+ C+  +C+  WRE
Sbjct: 63  KGGSETEATCPHCNFGRARFQSLQIRSADEPATTFYFCLNEKCSRVWRE 111

[115][TOP]
>UniRef100_B9I5C8 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I5C8_POPTR
          Length = 112

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGEDAW 238
           +CPTC  +L  E     +  R++C  CPY  +I+   KI +   LA+K+++ +   ED  
Sbjct: 3   FCPTCGMLLRYETPNMGQAARFYCPTCPYFASIESRVKIKRKQKLAKKEIEPIFTLEDMK 62

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
              A+TDATCP C++ +A F +IQ RSADEPAT F+ C+  +C   WRE
Sbjct: 63  TGGAETDATCPHCNFGRACFQQIQIRSADEPATTFYFCLNEKCGRMWRE 111

[116][TOP]
>UniRef100_A2RAZ1 Complex: hRPC11 is a small n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2RAZ1_ASPNC
          Length = 117

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   E +        R+ C+ CPY Y +D+   +  P+ +K+V+DV G
Sbjct: 3   LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQSWFEKTPMKQKEVEDVFG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G++ + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 63  GKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 116

[117][TOP]
>UniRef100_Q54K02 RNA polymerase III subunit n=1 Tax=Dictyostelium discoideum
           RepID=Q54K02_DICDI
          Length = 111

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241
           +CP CANMLL++     ++ RYFCQ CPY+++I  K+    PL RK +D DV GGE+AWK
Sbjct: 3   FCPLCANMLLIDPD--LQDTRYFCQTCPYIFHIKNKVVTKVPLQRKIIDSDVFGGEEAWK 60

Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           +    +  C  C Y +A  +EIQ     +P T +++C    C ++W++
Sbjct: 61  SADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKNPGCENQWQK 108

[118][TOP]
>UniRef100_B6H1G4 DNA-directed RNA polymerase subunit n=1 Tax=Penicillium chrysogenum
           Wisconsin 54-1255 RepID=B6H1G4_PENCW
          Length = 116

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220
           M+ +CP C+N L +   E S        R+ C+ CPY   ++K   +   + +K+VDDV 
Sbjct: 1   MLVFCPNCSNALTISKAESSTRFPAGVNRFECRVCPYEAPLEKNYFEKKAMKQKEVDDVF 60

Query: 221 GGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           GG++ + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 61  GGKEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKCTSCGARWRE 115

[119][TOP]
>UniRef100_Q9ZQC0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
           RepID=Q9ZQC0_ARATH
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238
           +CPTC N+L  E    S   R+FC  CPYV NI+++  I K   L +K ++ V+  +D  
Sbjct: 3   FCPTCGNLLRYEGGGSS---RFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDI- 58

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              A+T+A CP+C + +AYF  +Q RSADEP + F++C++C   WRE
Sbjct: 59  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[120][TOP]
>UniRef100_B9F1L5 DNA-directed RNA polymerase subunit n=2 Tax=Oryza sativa
           RepID=B9F1L5_ORYSJ
          Length = 106

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C  +L ++       LR++C  CPYV  I KK    A L +K+V+ +    DA KN
Sbjct: 3   FCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPIVKK----ARLVKKEVEPIFSDSDAMKN 58

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
             KT  TCP+C   +AY+ ++Q RSADEP + F+KC   +C   WRE
Sbjct: 59  APKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 105

[121][TOP]
>UniRef100_C7YMJ1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7YMJ1_NECH7
          Length = 126

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           +  CP CAN+L V  T  ++  R  C+ CP+ ++I + +       R + +DV GG  AW
Sbjct: 18  LAVCPHCANILTVSFTN-TRTNRLECRTCPFEHHITEPVFSRRMYERVEKEDVFGGPGAW 76

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N  K    CP   C+  +A F ++Q RSADEP T F+KC+ C HRWRE
Sbjct: 77  DNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKCMTCGHRWRE 125

[122][TOP]
>UniRef100_UPI000187D4AA hypothetical protein MPER_05318 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187D4AA
          Length = 70

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 39/63 (61%), Positives = 49/63 (77%)
 Frame = +2

Query: 191 LARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHR 370
           L RK+VDDVLGGE+ WK+   T A+CPKC+  QAYF ++Q RSADEP T F++C  CAH+
Sbjct: 7   LKRKEVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPMTTFYRCTACAHQ 66

Query: 371 WRE 379
           WRE
Sbjct: 67  WRE 69

[123][TOP]
>UniRef100_UPI0000E8102D PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E8102D
          Length = 98

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 43/90 (47%), Positives = 58/90 (64%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N+L+ E  E  +  R+ C  CPYV N+ +K+S       K+VDDVLGG  A
Sbjct: 1   MLLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVSSRKYPRLKEVDDVLGGAAA 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSAD 325
           W+NV  T   CPKC + +AYFM+IQTRS +
Sbjct: 59  WENVDSTAEPCPKCEHSRAYFMQIQTRSPE 88

[124][TOP]
>UniRef100_B0XPK1 RNA polymerase III subunit C11, putative n=2 Tax=Aspergillus
           fumigatus RepID=B0XPK1_ASPFC
          Length = 116

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220
           M+T+CP C N L +   E ++E      R+ C+ CPY + +     +   + +K+V+DV 
Sbjct: 1   MLTFCPNCGNSLTISRGEPTREYPLGVNRFECRTCPYQHLLKHGRQEKTTMKQKEVEDVF 60

Query: 221 GGEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           GG++ + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 61  GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115

[125][TOP]
>UniRef100_A1CR48 RNA polymerase III subunit C11, putative n=1 Tax=Aspergillus
           clavatus RepID=A1CR48_ASPCL
          Length = 116

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVL 220
           M+T+CP C N L +   E +++      R+ C+ CPY + +     +   + +K+V+DVL
Sbjct: 1   MLTFCPNCGNSLTISRGEPTRDYPLGVNRFECRTCPYQHILKNGRQEKTIMKQKEVEDVL 60

Query: 221 GGEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           GG++ + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 61  GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115

[126][TOP]
>UniRef100_Q8LE40 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
           RepID=Q8LE40_ARATH
          Length = 106

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238
           +CPTC N+L  E    S   R+FC  CPYV  I+++  I K   L +K ++ V+  +D  
Sbjct: 3   FCPTCGNLLRYEGGGSS---RFFCSTCPYVAYIERRVEIKKKQLLVKKSIEPVVTKDDI- 58

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              A+T+A CP+C + +AYF  +Q RSADEP + F++C++C   WRE
Sbjct: 59  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[127][TOP]
>UniRef100_B8NLF0 DNA-directed RNA polymerase subunit n=2 Tax=Aspergillus
           RepID=B8NLF0_ASPFN
          Length = 117

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   + +        R+ C+ CPY Y +++   +   + +K+V+DV G
Sbjct: 3   LTFCPNCSNALTISRADPTPRHPLGVNRFECRTCPYQYVLEQSYFEKTEMKQKEVEDVFG 62

Query: 224 GEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           G++ + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 63  GKEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKCTSCGARWRE 116

[128][TOP]
>UniRef100_A5KBL4 Transcription factor, putative n=1 Tax=Plasmodium vivax
           RepID=A5KBL4_PLAVI
          Length = 106

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208
           M  +CP C N++LV +      + ++C+ C + Y I  KI         +K  PL    V
Sbjct: 1   MAFFCPNCHNIVLVHV---ENGVYFYCKTCNFKYKIRNKIFNKFDCKEYNKTIPLDAVDV 57

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++        KN++KT A CPKC++ +AYF  +Q RSADEP+TLF+ CV+C H W+E
Sbjct: 58  NN--------KNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYICVKCNHHWKE 106

[129][TOP]
>UniRef100_Q9LNK0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
           RepID=Q9LNK0_ARATH
          Length = 106

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGEDAW 238
           +CPTC N+L  E    S   R+FC  CPYV  I ++  I K   L +K ++ V+  +D  
Sbjct: 3   FCPTCGNLLRYEGGGNS---RFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI- 58

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              A+T+A CP+C + +AYF  +Q RSADEP + F++C++C   WRE
Sbjct: 59  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[130][TOP]
>UniRef100_Q6FRH9 DNA-directed RNA polymerase subunit n=1 Tax=Candida glabrata
           RepID=Q6FRH9_CANGA
          Length = 100

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
 Frame = +2

Query: 134 CQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK---CSYHQAYFM 301
           C+ CPY + I+  +I     L RK+VDDVLGG   W NV +T   CP    C    AYF 
Sbjct: 16  CRSCPYEFPIESIEIYDRKKLPRKEVDDVLGG--GWDNVDQTKVQCPNYDTCGGESAYFF 73

Query: 302 EIQTRSADEPATLFFKCVQCAHRWRE 379
           ++Q RSADEP T F+KCV CAHRW+E
Sbjct: 74  QLQIRSADEPMTTFYKCVNCAHRWKE 99

[131][TOP]
>UniRef100_C1G1F3 Putative uncharacterized protein n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1G1F3_PARBD
          Length = 137

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
 Frame = +2

Query: 125 RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK--CSYHQAYF 298
           R+ C+ CPY Y +D+   +   + RK+V DVLGG+D WKN       CP   C   +A+F
Sbjct: 50  RFECRTCPYQYILDRTYYERTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDRAFF 109

Query: 299 MEIQTRSADEPATLFFKCVQCAHRWRE 379
            ++Q RSADEP T F KC  C  RWRE
Sbjct: 110 YQLQIRSADEPMTTFLKCTTCGARWRE 136

[132][TOP]
>UniRef100_C4V7E3 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4V7E3_NOSCE
          Length = 105

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 43/105 (40%), Positives = 63/105 (60%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C N+L ++  + + +  + C  CPY Y I+   +K A      VD VLG ED +K 
Sbjct: 3   FCPLCTNILAID--KLNIQTAFICNTCPYQYKINMVFNKSARNNVIAVDKVLG-EDEYKY 59

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            +  +  C KC  ++A FME+QTRSADEP T+F++CV C   W+E
Sbjct: 60  ASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECVLCKTNWKE 104

[133][TOP]
>UniRef100_O96159 Transcription factor, putative n=1 Tax=Plasmodium falciparum 3D7
           RepID=O96159_PLAF7
          Length = 106

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208
           M  +CP C N++LV +    K + ++C+ C Y Y I  KI         +K  PL    +
Sbjct: 1   MAFFCPNCHNIVLVHI---EKGVYFYCKSCNYKYKIKNKIYNKFDCQQFNKTIPLDAVDI 57

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++        KN++KT A CPKC+  +AYF  +Q RSADEP+T+F+ CV+C + W+E
Sbjct: 58  NN--------KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106

[134][TOP]
>UniRef100_B3L0T6 Transcription factor, putative n=1 Tax=Plasmodium knowlesi strain H
           RepID=B3L0T6_PLAKH
          Length = 106

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208
           M  +CP C N++LV +      + ++C+ C + Y I  KI         +K  PL    +
Sbjct: 1   MAFFCPNCHNIVLVNI---ENGVYFYCKTCNFKYKIKNKIFNKFDCRDLNKTIPLDAVDM 57

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++        KN++KT A CPKC++ +AYF  +Q RSADEP+TLF+ C++C H W+E
Sbjct: 58  NN--------KNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYICIKCNHHWKE 106

[135][TOP]
>UniRef100_B2ATA0 DNA-directed RNA polymerase subunit n=1 Tax=Podospora anserina
           RepID=B2ATA0_PODAN
          Length = 111

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           I +CP CANML++   +     R  C+ CPY + I+K         + + +D+ GG DAW
Sbjct: 3   ILFCPYCANMLILSRMDTGGN-RVECRTCPYQHAIEKPYYSRKVFPKVEKEDLFGGPDAW 61

Query: 239 KNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N  K    C   +CS  +A F ++Q RSADEP T F++C+ C   WRE
Sbjct: 62  ANAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRCLTCGKNWRE 110

[136][TOP]
>UniRef100_C5JU87 DNA-directed RNA polymerase subunit n=1 Tax=Ajellomyces
           dermatitidis SLH14081 RepID=C5JU87_AJEDS
          Length = 111

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   + +        R+ C+ CPY Y +D+   +   + RK+V DVLG
Sbjct: 3   LTFCPNCSNALTISRADPTPRYPLGVNRFECRTCPYQYVLDRTYYERTEMKRKEVADVLG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349
           G+D WKN       CP   C   +AYF ++Q RSADEP T FFK
Sbjct: 63  GKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFK 106

[137][TOP]
>UniRef100_B5X7W8 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Salmo salar
           RepID=B5X7W8_SALSA
          Length = 93

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
 Frame = +2

Query: 200 KQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRW 373
           K+VDDVLGG  AW+NV  T   CPKC + +A+FM+IQTRSADEP T F+KC   +C HRW
Sbjct: 32  KEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRW 91

Query: 374 RE 379
           R+
Sbjct: 92  RD 93

[138][TOP]
>UniRef100_B8M829 RNA polymerase III subunit C11, putative n=1 Tax=Talaromyces
           stipitatus ATCC 10500 RepID=B8M829_TALSN
          Length = 116

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L V   E S        R+ C+ CPY + ID+   +   L +K+V+ V  
Sbjct: 3   LTFCPHCSNALTVSRAEPSTTYPMGVNRFQCRTCPYQFVIDRLYVEEKVLKQKEVEVVFN 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            E+ +KN  K    CP   C+   AYF ++Q RSADEP T F +C  CA  WR+
Sbjct: 63  DEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTTCAKTWRD 116

[139][TOP]
>UniRef100_C0S3L8 DNA-directed RNA polymerase subunit n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S3L8_PARBP
          Length = 134

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +  +E +        R+ C+ CPY Y +D+   +   + RK+V DVLG
Sbjct: 3   LTFCPNCSNALTISRSEPTSRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVADVLG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349
           G+D WKN       CP   C   +A+F ++Q RSADEP T F K
Sbjct: 63  GKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLK 106

[140][TOP]
>UniRef100_B6Q634 RNA polymerase III subunit C11, putative n=1 Tax=Penicillium
           marneffei ATCC 18224 RepID=B6Q634_PENMQ
          Length = 116

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L V   + S        R+ C+ CPY + ID+   +   L +K+V+ V  
Sbjct: 3   LTFCPHCSNALTVSRADPSTAYPMGVNRFQCRTCPYQFVIDRLYVEEKVLKQKEVEVVFN 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            E+ +KN  K    CP   C+   AYF ++Q RSADEP T F +C  CA  WR+
Sbjct: 63  DEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTTCAKTWRD 116

[141][TOP]
>UniRef100_A9UWA6 DNA-directed RNA polymerase subunit n=1 Tax=Monosiga brevicollis
           RepID=A9UWA6_MONBE
          Length = 109

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYF--CQCCPYVYNIDKK--ISKMAPLARKQVDDVLGGED 232
           +CP C NML+++ + +     YF  C  CPY + + +    ++ +    ++ D++ GG+ 
Sbjct: 3   FCPLCGNMLIMQSSLHG----YFFGCNTCPYKHELGEHRVTARRSMHHDERADEIYGGDS 58

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWREG 382
           A + +  T+A CPKC +++A +++ QTRSADEP+T+F+ C +C H+W +G
Sbjct: 59  AKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFYCCEKCNHKWNDG 108

[142][TOP]
>UniRef100_A1D3Y9 RNA polymerase III subunit C11, putative (Fragment) n=1
           Tax=Neosartorya fischeri NRRL 181 RepID=A1D3Y9_NEOFI
          Length = 116

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
 Frame = +2

Query: 68  CPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED 232
           CP C N L +   E ++E      R+ C+ CPY + +     +   + +K+V+DV GG++
Sbjct: 5   CPNCGNSLTISRGEPTREYPLGVNRFECRTCPYQHLLKHGRQEKTTMKQKEVEDVFGGKE 64

Query: 233 AWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            + N       CP   C+  +AYF ++Q RSADEP T F KC  C  RWRE
Sbjct: 65  EFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 115

[143][TOP]
>UniRef100_Q9Y1T9 Transcription factor IIS homolog (Fragment) n=1 Tax=Giardia
           intestinalis RepID=Q9Y1T9_GIALA
          Length = 70

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +2

Query: 173 ISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC 352
           IS+   L RK VD VLGGE AW+   KT   CP C++  A+++++Q RS+DEP + F++C
Sbjct: 1   ISRSLTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRC 60

Query: 353 VQCAHRWRE 379
            QCAH+WRE
Sbjct: 61  CQCAHQWRE 69

[144][TOP]
>UniRef100_Q4YPC3 Transcription factor, putative n=1 Tax=Plasmodium berghei
           RepID=Q4YPC3_PLABE
          Length = 106

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208
           M  +CP C N++LV +      +  +C+ C + Y I  KI         +K  PL    +
Sbjct: 1   MAFFCPNCHNIVLVHV---ENGVYLYCKTCNFKYKIKNKIYNKYDCKEFNKTIPLDAVDM 57

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++        KN++KT A CPKC++ +AYF  +Q RSADEP+TLF+ CV C + W+E
Sbjct: 58  NN--------KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106

[145][TOP]
>UniRef100_Q4Y0E1 Putative uncharacterized protein n=1 Tax=Plasmodium chabaudi
           RepID=Q4Y0E1_PLACH
          Length = 106

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI---------SKMAPLARKQV 208
           M  +CP C N++LV +      +  +C+ C + Y I  KI         +K  PL    +
Sbjct: 1   MAFFCPNCHNIVLVHV---ENGVYLYCKTCNFKYKIKNKIYNKYDCTEFNKTIPLDAVDM 57

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++        KN++KT A CPKC++ +AYF  +Q RSADEP+TLF+ CV C + W+E
Sbjct: 58  NN--------KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106

[146][TOP]
>UniRef100_Q15ES4 DNA-directed RNA polymerase , putative n=1 Tax=Schistosoma mansoni
           RepID=Q15ES4_SCHMA
          Length = 115

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLG 223
           + +CP C ++L++E + +   L      C Y + + + +      +     R + D V  
Sbjct: 3   VLFCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFS 62

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            ED + + A+TD  CPKCS+ +AYF+++QTRSADEP+T+ + C++C H W E
Sbjct: 63  VEDEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114

[147][TOP]
>UniRef100_A7EJA6 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7EJA6_SCLS1
          Length = 123

 Score = 83.6 bits (205), Expect = 9e-15
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKEL------------RYFCQCCPYVYNIDKKISKMAPLAR 199
           M+ +CP+C+N+L V +T +S               R  C  CPY Y + + I       R
Sbjct: 1   MLLFCPSCSNILTVSVTPHSSTPTPTSTQDLSGANRLECLTCPYQYILTRSIYDRKTFVR 60

Query: 200 KQVDDVLGGEDAWKNVAKTDATCP--KCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRW 373
           ++ +DV GG+DAW N       C   +C+   A    +Q RSADEP T F++C+ CA++W
Sbjct: 61  EEKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYRCMTCANQW 120

Query: 374 RE 379
           RE
Sbjct: 121 RE 122

[148][TOP]
>UniRef100_A2BN99 DNA-directed RNA polymerase subunit M n=1 Tax=Hyperthermus
           butylicus DSM 5456 RepID=A2BN99_HYPBU
          Length = 114

 Score = 83.6 bits (205), Expect = 9e-15
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-------VLG 223
           +CP C +++ +  T  +    + C  C Y   + +       + RK++         V+ 
Sbjct: 3   FCPRCGSLMTLRRT--NDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVD 60

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
               WK + KT A CP+C YH+AY   +QTR ADEP T FFKCV C + WRE
Sbjct: 61  PNVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVSCGYVWRE 112

[149][TOP]
>UniRef100_A8Q173 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
           7966 RepID=A8Q173_MALGO
          Length = 68

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 191 LARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFK 349
           L RKQVDDV+GGED+WKNV  TDATCPKC   +AYFM++Q RSADEP+T   +
Sbjct: 3   LERKQVDDVMGGEDSWKNVDSTDATCPKCDNGRAYFMQLQIRSADEPSTFLIR 55

[150][TOP]
>UniRef100_UPI000155C09B PREDICTED: hypothetical protein, partial n=1 Tax=Ornithorhynchus
           anatinus RepID=UPI000155C09B
          Length = 68

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
 Frame = +2

Query: 200 KQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRW 373
           K+VDDVLGG  AW+NV  T +  PKC + +AYFM+IQTRSADEP T F+KC  VQC HRW
Sbjct: 10  KEVDDVLGGAAAWENVDST-SRAPKCEHPRAYFMQIQTRSADEPMTTFYKCCNVQCGHRW 68

[151][TOP]
>UniRef100_Q8SSB3 DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT n=1
           Tax=Encephalitozoon cuniculi RepID=Q8SSB3_ENCCU
          Length = 104

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 38/105 (36%), Positives = 64/105 (60%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C++ML+V+      EL   C+ C Y+Y I ++IS+   +  K+ +  +  +++ K 
Sbjct: 3   FCPLCSSMLVVKKQAIGNELS--CKMCGYLYAISEEISRTVGMTPKKSEGFVDEDESLKF 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V K    C +C   +  F+E+QTRSADEP T+F+KC++C   W+E
Sbjct: 61  VTKCGKRC-ECGSEEVSFVELQTRSADEPMTIFYKCIRCKKVWKE 104

[152][TOP]
>UniRef100_Q5DC18 SJCHGC03725 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5DC18_SCHJA
          Length = 115

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLG 223
           + +CP C ++L++E + +   L      C Y + + + +      +     R + D V  
Sbjct: 3   VLFCPNCHSLLMIEESAHCYSLNCSAPMCSYRWFVTQPLVLEHKPRQDIRLRLEEDAVFS 62

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            ED + + A+ D  CPKCS+ +AYF+++QTRSADEP+T+ + C++C H W E
Sbjct: 63  VEDEYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCMKCHHIWTE 114

[153][TOP]
>UniRef100_Q7SF80 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa
           RepID=Q7SF80_NEUCR
          Length = 111

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           I +CP CAN+L++   +     R  C+ CPY + IDK I       RK+ +DV GG  AW
Sbjct: 3   IVFCPFCANLLILSRADTGGN-RLECRTCPYEHPIDKPIYSRKNFPRKEKEDVFGGPGAW 61

Query: 239 KNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349
            N  K    C    C+ ++A F ++Q RSADEP T F+K
Sbjct: 62  DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYK 100

[154][TOP]
>UniRef100_Q4TTY9 DNA-dependent RNA polymerase subunit M n=1 Tax=Thermococcus
           thioreducens RepID=Q4TTY9_9EURY
          Length = 110

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229
           +CP C N++L +     K+  + C+ C Y    D+K  +   + +++V+      ++  E
Sbjct: 3   FCPKCGNLMLPD----RKKKVWVCRSCGYEEPFDEKKDREKTVIKQKVEHKPDEGIIVVE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K +  T  TCPKC    AY+ E+QTR+ DEP+T+F++C +C H WR
Sbjct: 59  QDVKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRCTKCGHTWR 107

[155][TOP]
>UniRef100_C5G9Y2 DNA-directed RNA polymerase III polypeptide n=1 Tax=Ajellomyces
           dermatitidis ER-3 RepID=C5G9Y2_AJEDR
          Length = 143

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = +2

Query: 125 RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPK--CSYHQAYF 298
           R+ C+ CPY Y +D+   +   + RK+V DVLGG+D WKN       CP   C   +AYF
Sbjct: 24  RFECRTCPYQYVLDRTYYERTEMKRKEVADVLGGKDEWKNADSQGTQCPAEGCDGDRAYF 83

Query: 299 MEIQTRSADEPATLFFK 349
            ++Q RSADEP T FFK
Sbjct: 84  YQLQIRSADEPMTTFFK 100

[156][TOP]
>UniRef100_Q9UYX7 Tfs archaeal transcription factor S n=1 Tax=Pyrococcus abyssi
           RepID=Q9UYX7_PYRAB
          Length = 110

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223
           M+ +CP C ++++ +     K   + C+ C Y   I+    K   +   +  K  + V+ 
Sbjct: 1   MVKFCPKCGSIMIPD----KKRGVFVCRRCGYEEPINPEDAKAYKRTEEVKHKPDEGVIV 56

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
            E  +  +     TCPKC YH+A++ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 57  VEQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKCKRCGYVWR 107

[157][TOP]
>UniRef100_O58397 110aa long hypothetical transcription-associated protein n=1
           Tax=Pyrococcus horikoshii RepID=O58397_PYRHO
          Length = 110

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223
           M+ +CP C ++++ +     K   + C+ C Y   I+    K   +   +  K  + V+ 
Sbjct: 1   MVKFCPRCGSIMIPD----KKRGVFVCRKCGYEEPINPEDAKAYRRTEEIKHKPDEGVIV 56

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
            E  +  +     TCPKC YH+A++ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 57  IEQDFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKCKRCGYVWR 107

[158][TOP]
>UniRef100_Q56254 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus celer
           RepID=RPOM_THECE
          Length = 110

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQV-----DDVLGGE 229
           +CP C N++L +     K   + C+ C Y    D++  +   + +++V     + ++  E
Sbjct: 3   FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K +  T  TCPKC    AY+ E+QTR+ DEP+T+F+KC +C H WR
Sbjct: 59  QDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 107

[159][TOP]
>UniRef100_B5IU63 Transcription factor S n=1 Tax=Thermococcus barophilus MP
           RepID=B5IU63_9EURY
          Length = 109

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK---QVDDVLGG 226
           M+ +CP C +++L +     K   + C+ C Y   ++ + +K   L +K   +V+D+   
Sbjct: 1   MVKFCPKCGSIMLPD----RKREVFVCRKCGYEEPLNPEAAKAYRLTQKVEHKVEDIPII 56

Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
           E     + K   TCPKC   +AY+ E+QTR+ DEP+T+F++C +C + WR
Sbjct: 57  EQDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGYTWR 106

[160][TOP]
>UniRef100_Q4U9E5 RNA polymerase small subunit, putative n=1 Tax=Theileria annulata
           RepID=Q4U9E5_THEAN
          Length = 108

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232
           M  +CP C ++L  E  EY+    + C  C Y   + K   K       K+    L   +
Sbjct: 1   MSLFCPLCHSILYFESKEYNNS-SFSCLRCSYNLPVTKNYYKETVCTNVKEAGKTLFEAN 59

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            +++  +  A CP C+  +AYFM IQTRSADEP T FF C  C  RW+E
Sbjct: 60  EFQHAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCTGCLKRWKE 108

[161][TOP]
>UniRef100_Q5JF34 Archaeal transcription factor S n=1 Tax=Thermococcus kodakarensis
           RepID=Q5JF34_PYRKO
          Length = 110

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-----DVLGGE 229
           +CP C N++L +     K   + C+ C Y    D++  +      K+V+     +++  E
Sbjct: 3   FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTKITKKVEHKPDEEIIVVE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K +  T  TCPKC    AY+ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 59  QDLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGYTWR 107

[162][TOP]
>UniRef100_C8V4B3 RNA polymerase III subunit C11, putative (AFU_orthologue;
           AFUA_1G06380) n=2 Tax=Emericella nidulans
           RepID=C8V4B3_EMENI
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   + S +      R+ C+ CPY Y +++   +  P+ +K+V+ V G
Sbjct: 3   LTFCPNCSNALTISRADPSPKYPLGINRFECRTCPYQYALEQAWFEKTPMKQKEVEAVFG 62

Query: 224 GEDAWKNVAKTDATCPK--CSYHQAYFMEIQTRSADEPATLFFK 349
           G+  ++N       CP   C+  +AYF ++Q RSADEP T F K
Sbjct: 63  GKAEFENADSMATQCPAEGCNGDRAYFFQLQIRSADEPMTTFLK 106

[163][TOP]
>UniRef100_Q4N244 Putative uncharacterized protein n=1 Tax=Theileria parva
           RepID=Q4N244_THEPA
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-KQVDDVLGGED 232
           M  +CP C ++L  E    +K   + C  C Y   + K   K       K+    L   +
Sbjct: 1   MSLFCPLCHSILYFEQKPENKS-SFSCLRCTYNLPVTKDYHKETVCTNVKEAGKTLFEAN 59

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            +K+  +  A CP C+  +AYFM IQTRSADEP T FF C  C  RW+E
Sbjct: 60  EFKHAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVCTACLKRWKE 108

[164][TOP]
>UniRef100_B6YVY9 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YVY9_THEON
          Length = 110

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229
           +CP C N++L +     K   + C+ C Y    D++  +      ++V+      ++  E
Sbjct: 3   FCPECGNLMLPD----RKRKVWVCRKCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
                + K   TCPKC   +AY+ E+QTR+ DEP+T+F+KC +C H WR
Sbjct: 59  QDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKCTKCGHVWR 107

[165][TOP]
>UniRef100_A7ASV0 Transcription factor S-II protein, putative n=1 Tax=Babesia bovis
           RepID=A7ASV0_BABBO
          Length = 109

 Score = 73.9 bits (180), Expect = 7e-12
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR--KQVDDVLGGE 229
           M  +CP C ++L        +   + C  C Y   I ++  K     +  K++       
Sbjct: 1   MALFCPLCHSVLFFSCNP-PQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSV 59

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           + +++  K  A CP C   +AYFM IQTRSADEP T FF C  C HRW+E
Sbjct: 60  NEFEHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109

[166][TOP]
>UniRef100_C5A5N8 Transcription elongation factor S (TFS_arch) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A5N8_THEGJ
          Length = 110

 Score = 73.9 bits (180), Expect = 7e-12
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229
           +CP C N++L +     K   + C+ C Y    D++  +      ++V+      ++  E
Sbjct: 3   FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K +  T  TCPKC    AY+ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 59  QDLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGYVWR 107

[167][TOP]
>UniRef100_B7R0T6 Transcription factor S n=1 Tax=Thermococcus sp. AM4
           RepID=B7R0T6_9EURY
          Length = 110

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD-----VLGGE 229
           +CP C N++L +     K   + C+ C Y    D++  +      ++V+      ++  E
Sbjct: 3   FCPKCGNLMLPD----RKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHRPDEGIIVVE 58

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K +  T  TCPKC    AY+ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 59  QDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGYVWR 107

[168][TOP]
>UniRef100_C6A1Y3 DNA-directed RNA polymerase subunit m n=1 Tax=Thermococcus
           sibiricus MM 739 RepID=C6A1Y3_THESM
          Length = 108

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK---QVDDVLGGEDA 235
           +CP C N++L +     K   + C+ C Y   +D + +    + +K     +D+   E  
Sbjct: 3   FCPKCGNIMLPD----KKRGVFVCRKCGYEEPLDLETASKYKITQKIKHDREDIPVIEQD 58

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              + K   TCPKC   +AY+ E+QTR+ DEP+T+F++C +C + WR
Sbjct: 59  VATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGYTWR 105

[169][TOP]
>UniRef100_B1L5R4 DNA-directed RNA polymerase, subunit M n=1 Tax=Candidatus
           Korarchaeum cryptofilum OPF8 RepID=B1L5R4_KORCO
          Length = 108

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK-ISKMAPLARKQVDDVLGGEDAWK 241
           +CP C  +L  +  +  K L Y+C  C Y      K  S++      +  DV+  E++ K
Sbjct: 2   FCPKCGTLLRPK--KAGKRLIYYCPSCGYESESPPKGNSQVITKVTSESGDVIIEEESEK 59

Query: 242 NVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             A   +A CPKC   +AYF  +QTR+ADEP T  +KC +C + WRE
Sbjct: 60  ISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKCTKCGYSWRE 106

[170][TOP]
>UniRef100_C7P7U4 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
           fervens AG86 RepID=C7P7U4_METFA
          Length = 108

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLA-----RKQVDDVL 220
           M+ +CP C N++L       K+ +  C  C Y      + SK          RK+   V+
Sbjct: 1   MVKFCPKCKNLML------PKDGKLKCVVCGYEEETGSEGSKEYEYKEHLENRKEKITVI 54

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            GE   + +  T   CPKC +++AY+   QTR ADEP T F+KC +C H WRE
Sbjct: 55  EGEGV-ETLPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106

[171][TOP]
>UniRef100_UPI0000E47A79 PREDICTED: similar to POLR3K, partial n=1 Tax=Strongylocentrotus
           purpuratus RepID=UPI0000E47A79
          Length = 65

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CPTCAN+L+VE  E  K LR+ C  CPYV+N+ +K++       K+VDDVLGG  AW+N
Sbjct: 3   FCPTCANVLVVE--EGPKCLRFACNTCPYVHNVTRKLANRKYPRLKEVDDVLGGAAAWEN 60

Query: 245 VAKT 256
           V  T
Sbjct: 61  VDST 64

[172][TOP]
>UniRef100_C9RF97 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
           vulcanius M7 RepID=C9RF97_9EURY
          Length = 107

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPY---VYNIDKKISKMAPLARKQVDDVLGG 226
           M+ +CP C N++L       K+ +  C  C Y      +  +      L  K+ +  +  
Sbjct: 1   MVKFCPKCKNLML------PKDGKLKCAVCGYEEETAEVSNEYEYKEHLEPKKKEITVIE 54

Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ++  + +  T   CPKC + +AY+   QTR ADEP T F+KC +C H WRE
Sbjct: 55  DEGLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 105

[173][TOP]
>UniRef100_C5U6A7 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
           infernus ME RepID=C5U6A7_9EURY
          Length = 104

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK-ISKMAPLARKQVDDVLGGED 232
           M+ +CP C N+LL        E +  C  C Y    +K+       L RK+   V+ G +
Sbjct: 1   MVKFCPKCNNVLL------PSEGKLKCPVCGYTEEGEKEGYEYKEKLKRKEEIAVIEGNE 54

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             + +      CPKC + +AY+   QTR ADEP T F++C +C H WRE
Sbjct: 55  I-ETLPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRCKKCGHTWRE 102

[174][TOP]
>UniRef100_Q07271 DNA-directed RNA polymerase subunit M n=1 Tax=Sulfolobus
           acidocaldarius RepID=RPOM_SULAC
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235
           +CP C +M++    E  K + Y C  C Y+   ++K +K+  + +    +   VL  +  
Sbjct: 3   FCPKCGSMMMPR-KENGKTV-YKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESDMP 60

Query: 236 WKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              V  T   +CP C   +AYF  +QTRSADEPAT F+KC +C   WRE
Sbjct: 61  KTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109

[175][TOP]
>UniRef100_Q58548 DNA-directed RNA polymerase subunit M n=1 Tax=Methanocaldococcus
           jannaschii RepID=RPOM_METJA
          Length = 108

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK----MAPLARKQVDDVLG 223
           M+ +CP C N++L       K+ +  C  C Y      + SK       L  K+    + 
Sbjct: 1   MVKFCPKCNNLML------PKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVI 54

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             +  + +  T   CPKC +++AY+   QTR ADEP T F+KC +C H WRE
Sbjct: 55  ESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106

[176][TOP]
>UniRef100_Q8U264 DNA-directed RNA polymerase subunit m n=1 Tax=Pyrococcus furiosus
           RepID=Q8U264_PYRFU
          Length = 110

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNID----KKISKMAPLARKQVDDVLG 223
           M+ +CP C ++++ +     +   + C+ C Y   I+    K   +   +  +  + V+ 
Sbjct: 1   MVKFCPKCGSIMIPD----RRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVV 56

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
            E     +     TCPKC +++A++ E+QTR+ DEP+T+F+KC +C + WR
Sbjct: 57  IEQEVSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGYVWR 107

[177][TOP]
>UniRef100_Q6L0M3 DNA-directed RNA polymerase subunit M n=1 Tax=Picrophilus torridus
           RepID=Q6L0M3_PICTO
          Length = 101

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD--VLGGEDAW 238
           +CP C +++           +Y C+ C Y   + K   K   +  K  D   ++  ++  
Sbjct: 2   FCPKCGSLMT------PSNGKYICRSCGY--EMSKGAEKSTKIVNKSSDKEIIMIEKEVN 53

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
                ++A CPKC +  AY++  QTRSADEP T F+ C  C +RWRE
Sbjct: 54  AEPLDSEAVCPKCHHVGAYYLLKQTRSADEPETKFYTCAACGYRWRE 100

[178][TOP]
>UniRef100_B8D6L3 DNA-directed RNA polymerase subunit M n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D6L3_DESK1
          Length = 75

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +2

Query: 257 DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           + TCPKC +H+AY+  IQTR+ADEP T FFKC +C + WRE
Sbjct: 33  EVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWRE 73

[179][TOP]
>UniRef100_A5UMY1 DNA-directed RNA polymerase subunit M, RpoM n=2
           Tax=Methanobrevibacter smithii RepID=A5UMY1_METS3
          Length = 104

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYV------YNIDKKISKMAPLARKQVDDVLGG 226
           +CP C +MLL   TE   EL+  C     +      YN+++KI +   +  K       G
Sbjct: 3   FCPECGSMLLP--TE-DNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEK-------G 52

Query: 227 EDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           ED    +  T A CP+C + +A +   QTRSADE  T FFKC++C H WRE
Sbjct: 53  EDV-NTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFKCLKCGHTWRE 102

[180][TOP]
>UniRef100_A0CQT2 Chromosome undetermined scaffold_24, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0CQT2_PARTE
          Length = 104

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           + +CP C+N L +E  E S   R  C  C Y + + K++        K+   +   +   
Sbjct: 1   MNFCPICSNFLSLE-NESSTGYRLKCPGCVYYHPL-KEMRLTKTFQSKEPAPITYPQ--- 55

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
           +N   TD  C KC   +A+F E QTR ADE +T+ F+C++C H+W+
Sbjct: 56  QNKQITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHKWK 101

[181][TOP]
>UniRef100_A8MBQ2 Transcription termination factor Tfs n=1 Tax=Caldivirga
           maquilingensis IC-167 RepID=A8MBQ2_CALMQ
          Length = 115

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGED-- 232
           I +CP C +++  +      ++ + C  C YV    +  S   PL  + V +    E   
Sbjct: 7   IKFCPKCGSIM--KPYRNGNKVTWRCPKCGYV----EDSSTTVPLVERTVIEHKPDEKPV 60

Query: 233 ----AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
               A  N+ K   TCP+C  ++AYF   QTR+ADEP T F++C +C + WRE
Sbjct: 61  VLTKANDNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRCTRCGYTWRE 113

[182][TOP]
>UniRef100_C1BL61 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1
           Tax=Osmerus mordax RepID=C1BL61_OSMMO
          Length = 90

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/64 (46%), Positives = 42/64 (65%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CPTC N+L+VE  E  K  R+ C  CPYV+NI +K++       K+VDDVLGG  A
Sbjct: 1   MLLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAKA 58

Query: 236 WKNV 247
           W+ +
Sbjct: 59  WETL 62

[183][TOP]
>UniRef100_Q2NE53 RpoM1 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NE53_METST
          Length = 105

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGEDAW 238
           +CP C  +L      + K+ ++ C  C Y   + ++  K   +A K  + D V+  +   
Sbjct: 3   FCPECGKVL------FPKDGKFTCDACGYEKGVTEESKKQYEVAEKVDKEDTVIVTDGNV 56

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           K +      CPKC    A++   QTRSADE  T FF+C +C + WRE
Sbjct: 57  KTLPTIKVICPKCGNKLAFWWLQQTRSADESETRFFRCTECDYTWRE 103

[184][TOP]
>UniRef100_A6UTI3 Transcription termination factor Tfs n=1 Tax=Methanococcus aeolicus
           Nankai-3 RepID=A6UTI3_META3
          Length = 103

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 35/108 (32%), Positives = 51/108 (47%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M+ +CP C N++L       KE    C  C +   ++K  S       +   +++  ED 
Sbjct: 1   MVKFCPKCNNIML------PKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDV 54

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              +  T   CP C   + Y+   QTR ADEP T F+KC +C H WRE
Sbjct: 55  -NTLPTTRIECPNCGNMEVYWWLQQTRCADEPETRFYKCTKCGHTWRE 101

[185][TOP]
>UniRef100_A3DM83 DNA-directed RNA polymerase, subunit M n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM83_STAMF
          Length = 104

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +2

Query: 152 VYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADE 328
           +Y I  KI      + K+   V+  E+  + +  T + TCPKC YH+AY+  +QTR+ADE
Sbjct: 30  LYRISVKIEH----SNKEKTVVVDEEERLRGLPITREVTCPKCGYHEAYYWIVQTRAADE 85

Query: 329 PATLFFKCVQCAHRWRE 379
           P T F+KC +C + WRE
Sbjct: 86  PPTRFYKCRRCGYVWRE 102

[186][TOP]
>UniRef100_B5ID90 Transcription factor S n=1 Tax=Aciduliprofundum boonei T469
           RepID=B5ID90_9EURY
          Length = 94

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
 Frame = +2

Query: 110 YSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWKNVAKTDAT-CPKCSY 283
           + K+ ++ C  C Y   IDK K  ++   A+++   V+  E+  K +   ++  CPKC +
Sbjct: 2   HPKDGKWVCSSCGYEMPIDKDKSQEIVAEAKEKEMIVISSEEELKALPYDESVICPKCGH 61

Query: 284 HQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             A++M  QTR+ADEP T F+ C +C HRWRE
Sbjct: 62  AGAHWMLQQTRAADEPETRFYICPKCGHRWRE 93

[187][TOP]
>UniRef100_A8AAT2 DNA-directed RNA polymerase, subunit M n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8AAT2_IGNH4
          Length = 113

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLAR-----KQVDDVLGGE 229
           +CP C ++++         L+  C  C Y   +    S +    +     K+   V+   
Sbjct: 3   FCPKCGSLMVARRVGGKTILK--CMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNN 60

Query: 230 DAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              + + KT D  CPKC + +AY+  +QTR+ DEP T F+KC +C H WRE
Sbjct: 61  IKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCTRCGHVWRE 111

[188][TOP]
>UniRef100_Q9HJG3 Probable transcription-associated protein TFIIS n=1
           Tax=Thermoplasma acidophilum RepID=Q9HJG3_THEAC
          Length = 100

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 32/105 (30%), Positives = 55/105 (52%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C +++           +Y C  C Y  + +K+  K+   +  + + ++  E+    
Sbjct: 2   FCPKCGSLMT------PVNGKYVCPSCGYEISKNKETIKIVSKSADK-ETIMIKEEVSAE 54

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              +DA CP+C +  A ++  QTRSADEP T F+ C +C +RWRE
Sbjct: 55  PLDSDAVCPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99

[189][TOP]
>UniRef100_UPI0000164DC6 DNA-directed RNA polymerase subunit M n=1 Tax=Thermoplasma
           volcanium GSS1 RepID=UPI0000164DC6
          Length = 100

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 33/105 (31%), Positives = 54/105 (51%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C +++           RY C  C Y  +  K+  K+   +  + + ++  E+    
Sbjct: 2   FCPKCGSLMT------PVNGRYVCPSCGYEVSKKKEDLKIVNKSNDK-ETIMIREEVSAE 54

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              +DA CP+C +  A ++  QTRSADEP T F+ C +C +RWRE
Sbjct: 55  PLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99

[190][TOP]
>UniRef100_Q5CYY8 RNA polymerase III subunit C11 (Fragment) n=1 Tax=Cryptosporidium
           parvum Iowa II RepID=Q5CYY8_CRYPV
          Length = 62

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +2

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           W ++ K  A CPKCS+ +AYF ++Q RSADEP T F+ CV+C  +W+E
Sbjct: 14  WCSLFKLLAVCPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKE 61

[191][TOP]
>UniRef100_Q97AQ6 Transcription factor [TFIIS/RPB9] n=1 Tax=Thermoplasma volcanium
           RepID=Q97AQ6_THEVO
          Length = 106

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 33/105 (31%), Positives = 54/105 (51%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C +++           RY C  C Y  +  K+  K+   +  + + ++  E+    
Sbjct: 8   FCPKCGSLMT------PVNGRYVCPSCGYEVSKKKEDLKIVNKSNDK-ETIMIREEVSAE 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              +DA CP+C +  A ++  QTRSADEP T F+ C +C +RWRE
Sbjct: 61  PLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105

[192][TOP]
>UniRef100_C1BNL8 DNA-directed RNA polymerase subunit n=1 Tax=Caligus rogercresseyi
           RepID=C1BNL8_9MAXI
          Length = 127

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 16  IRFCLECNNMLYPKEDKENKALMYACRNCDYKQLADNNCIYVNKIMHEVDEVTNIVSDVI 75

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           G     ++    D  CPKC + +A F + ++R AD+   L++ C   QCAHRW E
Sbjct: 76  GDPTLPRS---EDHPCPKCKHKEAVFFQSESRKADDEMRLYYVCTYPQCAHRWTE 127

[193][TOP]
>UniRef100_A8WJ33 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae
           AF16 RepID=A8WJ33_CAEBR
          Length = 315

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 25/40 (62%), Positives = 33/40 (82%), Gaps = 2/40 (5%)
 Frame = +2

Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           CP CS+ +AYFM++QTRSADEP T+F++C    CAHRW+E
Sbjct: 276 CPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 315

[194][TOP]
>UniRef100_A6SAU7 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
           B05.10 RepID=A6SAU7_BOTFB
          Length = 186

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKEL------------RYFCQCCPYVYNIDKKISKMAPLARKQV 208
           +CP+C+N+L V +T +S               R  C  CPY Y + + I       R++ 
Sbjct: 10  FCPSCSNILTVSVTPHSSTPTPTSTQDLTGANRLECLTCPYQYILTRSIFDRKTFVREEK 69

Query: 209 DDVLGGEDAWKNVAKTDATC--PKCSYHQAYFMEIQTRSADEPATLFFK 349
           +DV GG+DAW N       C   +C+   A    +Q RSADEP T F++
Sbjct: 70  EDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYR 118

[195][TOP]
>UniRef100_Q9YEZ3 Archaeal transcription factor S n=1 Tax=Aeropyrum pernix
           RepID=Q9YEZ3_AERPE
          Length = 118

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKE--LRYF--CQCCPYVYNI---DKKISKMAPLARKQVDDV 217
           I +CP C +++      Y K    RY   C+ C Y       D +  +M     K   D 
Sbjct: 5   IKFCPRCGSIM------YPKRDGARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDK 58

Query: 218 LGGED----AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           +   D        V K   TCPKC + + YF  +QTRSADEP T F++C +C + WRE
Sbjct: 59  IVVIDDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116

[196][TOP]
>UniRef100_B9ZDH0 Transcription termination factor Tfs n=1 Tax=Natrialba magadii ATCC
           43099 RepID=B9ZDH0_NATMA
          Length = 107

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +C  C +M++ E      + R  C  C      D++          Q DD +   D   N
Sbjct: 3   FCDDCGSMMMAE------DDRMVCTNCGAASERDREREDEFVTTESQTDDEVIESDENAN 56

Query: 245 VA----KTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
                  TD  C +C   +A++   QT SADEP T FFKC +C HRWR
Sbjct: 57  FEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHRWR 104

[197][TOP]
>UniRef100_UPI00006CB60F hypothetical protein TTHERM_00444250 n=1 Tax=Tetrahymena
           thermophila RepID=UPI00006CB60F
          Length = 108

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAW 238
           + +CP CAN L+++        R+ C+ C Y Y + KKI  +   +R   DD +      
Sbjct: 1   MNFCPLCANALIIQ--NVGGNNRFSCRTCTYFYPLLKKIETVT-YSRMVKDDTIHDISLQ 57

Query: 239 KNVAKTDAT--CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           K   +TD    CP C    AY    Q RS DE  T  + C  C+H W++
Sbjct: 58  KESLQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKNCSHTWKD 106

[198][TOP]
>UniRef100_B4JS70 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi
           RepID=B4JS70_DROGR
          Length = 129

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKDNKTLMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[199][TOP]
>UniRef100_A3MUU7 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum
           calidifontis JCM 11548 RepID=A3MUU7_PYRCJ
          Length = 124

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
 Frame = +2

Query: 20  RGTSFRQSERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKM 184
           RGTS R         +CP   ++L+         LR  C  C Y   + +++     SK 
Sbjct: 11  RGTSVR---------FCPNDKSLLIPVKKGDRTVLR--CPKCGYEEEVSQEVRGRYQSKS 59

Query: 185 APLARKQVDDVLGGEDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQC 361
           A   + Q+  V    D   N+ K     CPKC + +AYF   QTR+ADEP T F+KC +C
Sbjct: 60  AVENKNQLIVVA---DNAVNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKCTKC 116

Query: 362 AHRWRE 379
            H WRE
Sbjct: 117 GHVWRE 122

[200][TOP]
>UniRef100_UPI0000D56411 PREDICTED: similar to GA17176-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D56411
          Length = 130

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232
           I +C  C NML  +  + +K L Y C+ C Y  + D K   +  +  +  ++  ++    
Sbjct: 19  IRFCQECNNMLYPKEDKENKILLYACRNCDYKQHADSKCIYVNKIMHEIDELTHIVPDVI 78

Query: 233 AWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           +   + +T D  CP+C++ +A F + QTR A+E   L++ C    CAHRW E
Sbjct: 79  SDPTLPRTEDHHCPECNHREAVFFQAQTRRAEEEMRLYYVCTNPMCAHRWTE 130

[201][TOP]
>UniRef100_UPI000038E298 DNA-directed RNA polymerase subunit M n=1 Tax=Ferroplasma
           acidarmanus fer1 RepID=UPI000038E298
          Length = 101

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
 Frame = +2

Query: 125 RYFCQCC----PYVYNIDKKISKMAPLARKQVDDVLGGEDAWKNVAKTDATCPKCSYHQA 292
           +Y C  C    P     D+KI  ++  + K++  ++  ++       +DA CP C +  A
Sbjct: 16  KYICNSCGNEIPKAGTADQKI--ISKSSDKEI--IMVAKEVNAEPLDSDAVCPVCHHTGA 71

Query: 293 YFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           Y++  QTRSADEP T F+ C  C HRWRE
Sbjct: 72  YYLLKQTRSADEPETKFYTCESCGHRWRE 100

[202][TOP]
>UniRef100_P36958 DNA-directed RNA polymerase II subunit RPB9 n=6 Tax=melanogaster
           subgroup RepID=RPB9_DROME
          Length = 129

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[203][TOP]
>UniRef100_B4NAN1 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila willistoni
           RepID=B4NAN1_DROWI
          Length = 129

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[204][TOP]
>UniRef100_B4MBD3 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila virilis
           RepID=B4MBD3_DROVI
          Length = 129

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKDNKILMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[205][TOP]
>UniRef100_Q299B2 DNA-directed RNA polymerase subunit n=2 Tax=pseudoobscura subgroup
           RepID=Q299B2_DROPS
          Length = 129

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[206][TOP]
>UniRef100_B3LZX4 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila ananassae
           RepID=B3LZX4_DROAN
          Length = 129

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + +K L Y C+ C Y    D       KI          V DV+
Sbjct: 18  IRFCQECNNMLYPKEDKDNKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
                 +     D  CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 78  SDPTLPRT---EDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129

[207][TOP]
>UniRef100_Q980K2 DNA-directed RNA polymerase, subunit M (RpoM-1) n=1 Tax=Sulfolobus
           solfataricus RepID=Q980K2_SULSO
          Length = 114

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGG 226
           ++ +CP C N ++V      K + Y C  C Y   + +    +    +  + +   VL  
Sbjct: 3   VVKFCPKC-NSMMVPKKSNGKNV-YRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEE 60

Query: 227 EDAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           E+      K     CP C   +AYF  +QTR ADEP T F+KC +C   WRE
Sbjct: 61  EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 112

[208][TOP]
>UniRef100_A8TE75 Transcription termination factor Tfs n=1 Tax=Methanococcus voltae
           A3 RepID=A8TE75_METVO
          Length = 105

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK--MAPLARKQVDDVLGGE 229
           M+ +CP C N++L       KE    C  C +  +++    K  ++     +  DV   E
Sbjct: 1   MVEFCPKCNNIML------PKEGILKCVVCGFESSLENNKDKYELSEKIESKSQDVTVIE 54

Query: 230 DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           +    +      CP C   +AY+   QTR ADEP T F+KC +C+H WRE
Sbjct: 55  NV-NTLPSIRIECPSCGNMEAYWWLQQTRCADEPETRFYKCKKCSHTWRE 103

[209][TOP]
>UniRef100_Q8PX24 DNA-directed RNA polymerase subunit M n=1 Tax=Methanosarcina mazei
           RepID=Q8PX24_METMA
          Length = 107

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD----VLG 223
           ++ +C  C +M+      + K+  Y C+ C     I+        +++ ++DD    VL 
Sbjct: 3   LMQFCTKCKSMM------FPKDGNYHCRKCGSTIPIESDAKNF--VSKAKIDDHEVVVLE 54

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           GE     +  T+A CP+C  + A +   Q RSADE  T FFKC +C + WRE
Sbjct: 55  GEQT-SGLPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWRE 105

[210][TOP]
>UniRef100_A6RGN0 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
           NAm1 RepID=A6RGN0_AJECN
          Length = 140

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +   + S        R+ C+ CPY Y +D+   +   + RK+V DVLG
Sbjct: 3   LTFCPNCSNALTISRADPSPRYPLGVNRFECRTCPYQYILDRTYYERTEMKRKEVSDVLG 62

Query: 224 GEDAWKN 244
           G+D WKN
Sbjct: 63  GKDEWKN 69

[211][TOP]
>UniRef100_Q5V537 DNA-directed RNA-polymerase subunit M n=1 Tax=Haloarcula
           marismortui RepID=Q5V537_HALMA
          Length = 107

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +C  C +M+  +  E        CQ C      D+  +       +Q DD L   +   N
Sbjct: 3   FCDDCGSMMHADGDEM------VCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEGSN 56

Query: 245 V----AKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
                   D TC +C + +A++   QT SADEP T FFKC +C HRWRE
Sbjct: 57  FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105

[212][TOP]
>UniRef100_A9A2X5 Transcription termination factor Tfs n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A2X5_NITMS
          Length = 105

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG--GEDAW 238
           +CP C     V+L + +  L   C  C Y    ++K +K      +Q + +L   G +  
Sbjct: 3   FCPKCE----VKLKKGTSGLE--CSKCGYTEGAEEKQTKKTVETEEQEESILAFEGNEGE 56

Query: 239 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
           ++       C KC + +A +  +QTRSADEP T F++C +C + WR
Sbjct: 57  ESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTKCQYTWR 102

[213][TOP]
>UniRef100_A4WLS3 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum
           arsenaticum DSM 13514 RepID=A4WLS3_PYRAR
          Length = 110

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKI-----SKMAPLARKQVDDVLGGE 229
           +CP   ++L+ +  +   +    C  C Y     + +     SKM    +  V  V G E
Sbjct: 3   FCPNDRSILVPK--KKGDKTVLVCPKCGYEEEASQDVKSRYQSKMTVENKNPVVVVAGNE 60

Query: 230 DAWKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
               N+ K     CPKC + +AYF   QTR+ADEP T F++C +C H WRE
Sbjct: 61  ---VNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYRCTKCGHTWRE 108

[214][TOP]
>UniRef100_A0RXH6 DNA-directed RNA polymerase, subunit M/Transcription elongation
           factor TFIIS n=1 Tax=Cenarchaeum symbiosum
           RepID=A0RXH6_CENSY
          Length = 103

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 32/104 (30%), Positives = 49/104 (47%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP C + L              C  C Y  +  +  +K  P       +VL G    K 
Sbjct: 3   FCPKCEDRLR------KNGDASVCPKCGYTESAARGPTKAKPAEGTPEINVLDGPVDEKL 56

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
           ++     C KC + +A +  +QTRSADEP T F++C++C+H WR
Sbjct: 57  LSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSHTWR 100

[215][TOP]
>UniRef100_Q9P9I8 Archaeal transcription factor S n=1 Tax=Methanothermococcus
           thermolithotrophicus RepID=Q9P9I8_METTL
          Length = 105

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYV---------YNIDKKISKMAPLARKQV 208
           M+ +CP C N++L       K  R  C  C +          Y + +KI      A+KQ 
Sbjct: 1   MVEFCPKCNNIML------PKNGRLKCTVCGFEEELGNRTEEYELKEKIE-----AKKQE 49

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             V+   D    +  T   CP C   +A +   QTR ADEP T F+KC +C H WRE
Sbjct: 50  VTVIEDVDT---LPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103

[216][TOP]
>UniRef100_Q7Q4H0 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Anopheles
           gambiae RepID=Q7Q4H0_ANOGA
          Length = 128

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232
           I +C  C NML  +  + +K L Y C+ C Y    D     +  +  +  ++  ++    
Sbjct: 17  IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76

Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           +   + +T+   CPKCS+ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 77  SDPTLPRTEEHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNSSCCHRWTE 128

[217][TOP]
>UniRef100_B7PRG9 DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis
           RepID=B7PRG9_IXOSC
          Length = 129

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK------KISKMAPLARKQVDDVL 220
           I +C  C NML  +  + ++ L Y C+ C Y    D       KI+       + V DV+
Sbjct: 18  IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQVADNNCIYVNKITHEVDELTQIVSDVV 77

Query: 221 GGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
                 +     D TCPKCS+ +A F + Q+R A++   L++ C    C HRW E
Sbjct: 78  HDPTLPRT---EDHTCPKCSHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129

[218][TOP]
>UniRef100_A8XD45 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis briggsae
           RepID=A8XD45_CAEBR
          Length = 144

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208
           I +CP C NML     + S+ L Y C+ C           YV  +  +I ++  +    +
Sbjct: 35  IKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVADII 94

Query: 209 DDVLGGEDAWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            D          + KT+  +CPKC+  +A F + QT+ A+E   L++ C+ C  RW E
Sbjct: 95  HD--------PTLPKTEEHSCPKCTKRKAVFFQAQTKKAEEEMRLYYVCMYCQFRWTE 144

[219][TOP]
>UniRef100_Q96YA8 112aa long hypothetical DNA-directed RNA polymerase subunit M n=1
           Tax=Sulfolobus tokodaii RepID=Q96YA8_SULTO
          Length = 112

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPY----VYNIDKKISKMAPLARKQVDDVLGGE- 229
           +CP C ++++ +  + + +  Y C  C Y      +   KI  +   + K+   V+ G+ 
Sbjct: 3   FCPKCGSIMVPK--KDNGKTMYKCPKCGYEEESTSSGSMKIKTVVKHSIKEKTLVVDGDA 60

Query: 230 -DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             A   + K   TCP C   +AYF  +QTR ADEP T F+KC +C   WRE
Sbjct: 61  PPAGAQITK-GVTCPACGNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 110

[220][TOP]
>UniRef100_C3NFY6 Transcription termination factor Tfs n=1 Tax=Sulfolobus islandicus
           Y.N.15.51 RepID=C3NFY6_SULIN
          Length = 111

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235
           +CP C N ++V      K + Y C  C Y   + +    +    +  + +   +L  E+ 
Sbjct: 3   FCPKC-NSMMVPKKSNGKNI-YRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM 60

Query: 236 WKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
                K     CP C   +AYF  +QTR ADEP T F+KC +C   WRE
Sbjct: 61  PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109

[221][TOP]
>UniRef100_Q4QDH9 RNA polymerase III C11 subunit, putative n=1 Tax=Leishmania major
           RepID=Q4QDH9_LEIMA
          Length = 151

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 275 CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           C   +AYF++IQ RSADEPAT+FFKCV+C H+WR+
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQ 150

[222][TOP]
>UniRef100_A8BBB2 DNA-directed RNA polymerase I 13.1 kDa polypeptide n=1 Tax=Giardia
           lamblia ATCC 50803 RepID=A8BBB2_GIALA
          Length = 103

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 35/107 (32%), Positives = 51/107 (47%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
           M ++C  CA  +L  +  Y      +C  C   Y   ++   +      Q   V   E  
Sbjct: 1   MPSFCQECAT-ILETMGPYD-----YCALCQKKYERARQGDVVTSEVHLQTHYV-AQERM 53

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
            +N    D TCPKC + QAY+  +Q RSADE  T+FF+C  C H++R
Sbjct: 54  TENRPVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKYR 100

[223][TOP]
>UniRef100_A4HY64 RNA polymerase III C11 subunit, putative n=1 Tax=Leishmania
           infantum RepID=A4HY64_LEIIN
          Length = 151

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 275 CSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           C   +AYF++IQ RSADEPAT+FFKCV+C H+WR+
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQ 150

[224][TOP]
>UniRef100_B9LMI0 Transcription factor TFIIS n=1 Tax=Halorubrum lacusprofundi ATCC
           49239 RepID=B9LMI0_HALLT
          Length = 108

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 29/59 (49%), Positives = 36/59 (61%)
 Frame = +2

Query: 203 QVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           +V DV   ED  K + KT A CP+C   +AY+   Q RSADE  T FF C +C H+WRE
Sbjct: 49  EVIDVSDAED--KGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105

[225][TOP]
>UniRef100_C7NVK8 Transcription termination factor Tfs n=1 Tax=Halorhabdus utahensis
           DSM 12940 RepID=C7NVK8_HALUD
          Length = 107

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVL--GGEDAW 238
           +C  C +M+  +  E        CQ C Y    D+ ++      + Q DD L    EDA 
Sbjct: 3   FCEECGSMMHADGEEM------VCQSCGYREAKDQDLADDFVSTQDQTDDDLIETEEDAN 56

Query: 239 KNVAKT--DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
                T  D  C +C +  A++   QT SADEP T FFKC +C HRWR
Sbjct: 57  FEGKPTADDVVCDECGHGVAWYTIKQTGSADEPPTRFFKCKECGHRWR 104

[226][TOP]
>UniRef100_UPI00003C0AF7 PREDICTED: similar to RNA polymerase II 15kD subunit CG3284-PA n=1
           Tax=Apis mellifera RepID=UPI00003C0AF7
          Length = 130

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208
           I +C  C NML  +  + +K L Y C+ C           YV  I  +I ++  +    +
Sbjct: 19  IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVADVI 78

Query: 209 DDVLGGEDAWKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
            D          + +T D  CPKC++ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 79  SD--------PTLPRTEDHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 130

[227][TOP]
>UniRef100_Q1HRD6 DNA-directed RNA polymerase subunit n=1 Tax=Aedes aegypti
           RepID=Q1HRD6_AEDAE
          Length = 128

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232
           I +C  C NML  +  + +K L Y C+ C Y    D     +  +  +  ++  ++    
Sbjct: 17  IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76

Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 379
           +   + +T+   CPKC++ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 77  SDPTLPRTEEHACPKCTHREAVFFQAQTRRAEEEMRLYYVCTNPGCCHRWTE 128

[228][TOP]
>UniRef100_B0W4J8 DNA-directed RNA polymerase subunit n=1 Tax=Culex quinquefasciatus
           RepID=B0W4J8_CULQU
          Length = 127

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARK--QVDDVLGGED 232
           I +C  C NML  +  + +K L Y C+ C Y    D     +  +  +  ++  ++    
Sbjct: 16  IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 75

Query: 233 AWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 379
           +   + +T+   CPKC++ +A F + QTR A+E   L++ C    C HRW E
Sbjct: 76  SDPTLPRTEEHACPKCAHREAVFFQAQTRRAEEEMRLYYVCTNPNCCHRWTE 127

[229][TOP]
>UniRef100_C3MRD3 Transcription factor S n=5 Tax=Sulfolobus islandicus
           RepID=C3MRD3_SULIL
          Length = 111

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235
           +CP C +M++ + +      R  C  C Y   + +    +    +  + +   +L  E+ 
Sbjct: 3   FCPKCNSMMVPKKSNGKNTYR--CTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM 60

Query: 236 WKNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
                K     CP C   +AYF  +QTR ADEP T F+KC +C   WRE
Sbjct: 61  PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109

[230][TOP]
>UniRef100_Q9LU97 Similarity to transcription-associated zinc ribbon protein n=1
           Tax=Arabidopsis thaliana RepID=Q9LU97_ARATH
          Length = 119

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
 Frame = +2

Query: 35  RQSERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYN----IDKKISKM--APLA 196
           R+SE L    +C  C  ML+++ T+Y++     C  C    N    IDK+I+    A   
Sbjct: 5   RESEFL----FCNLCGTMLVLKSTKYAE-----CPHCKTTRNAKDIIDKEIAYTVSAEDI 55

Query: 197 RKQVDDVLGGE--DAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHR 370
           R+++   L GE   A   + K    C KC + +  +   QTRSADE  T ++ C  CAHR
Sbjct: 56  RRELGISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHR 115

Query: 371 WREG 382
           + EG
Sbjct: 116 FTEG 119

[231][TOP]
>UniRef100_Q4DC35 DNA-directed RNA polymerase subunit n=1 Tax=Trypanosoma cruzi
           RepID=Q4DC35_TRYCR
          Length = 167

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
 Frame = +2

Query: 8   RAVDRGTSFRQ--SERLKMITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNI------ 163
           R+  RG   R+  S R   + +CP C  +LL+E   +    R+ C  C YV  I      
Sbjct: 27  RSRKRGPPRREQWSRRRSAMFFCPFCGTLLLIE--PHHPTNRFACSSCTYVAPIPSTHLL 84

Query: 164 ---------DKKISKMAPLARKQV----DDVLGGEDAWKNVAKTDATCPKCSYHQAYFME 304
                    +K +   A +    +    ++V GG+         +     C  ++A++++
Sbjct: 85  TVNHSLLKFNKTVEDDANVKANGIKTKNEEVDGGQLITVRCQNDEKF---CDGNRAHYVQ 141

Query: 305 IQTRSADEPATLFFKCVQCAHRWRE 379
           IQ RSADEPAT FFKC++C  +W++
Sbjct: 142 IQMRSADEPATTFFKCLKCGFQWKQ 166

[232][TOP]
>UniRef100_C4JZF5 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JZF5_UNCRE
          Length = 116

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKEL-----RYFCQCCPYVYNIDKKISKMAPLARKQVDDVLG 223
           +T+CP C+N L +     + +      R+ C+ CPY Y +D+   +   + RK+V DV+G
Sbjct: 3   LTFCPNCSNALTISRGPSTSQYPLGVNRFECRTCPYQYILDRTYFERTEMKRKEVADVMG 62

Query: 224 GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEP 331
           G+D WKN         + S  +    + + +S  +P
Sbjct: 63  GKDEWKNADNMRVHYLRGSLERKLISDFEPKSKPQP 98

[233][TOP]
>UniRef100_A6UQ74 Transcription termination factor Tfs n=1 Tax=Methanococcus
           vannielii SB RepID=A6UQ74_METVS
          Length = 105

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
 Frame = +2

Query: 56  MITYCPTCANMLLVELTEYSKELRYFCQCCPYV---------YNIDKKISKMAPLARKQV 208
           M+ +CP C N++L       K  +  C  C +          Y + +KI       +KQ 
Sbjct: 1   MVEFCPKCNNIML------PKNGKLKCVVCKHEEDIGDANKSYELKEKIE-----TKKQE 49

Query: 209 DDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             V+   D    +  T   CP C   +A++   QTR ADEP T F+KC +C+H WRE
Sbjct: 50  VTVIENIDT---MPITRIECPSCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103

[234][TOP]
>UniRef100_O27369 DNA-directed RNA polymerase subunit M n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOM_METTH
          Length = 104

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKIS---KMAPLARKQVDDVLGGEDA 235
           +CP C  ++      +  E ++ CQC  Y  +I  K+    +++     +   +  G+D 
Sbjct: 3   FCPKCGAVM------FPSEGKFKCQC-GYEKDITDKLKDKYRVSEEVEAKETIIFTGDDV 55

Query: 236 WKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              +  T   CPKC   +A++   QTR ADE  T FF+C +C H WRE
Sbjct: 56  -NTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102

[235][TOP]
>UniRef100_O29033 DNA-directed RNA polymerase subunit M n=1 Tax=Archaeoglobus
           fulgidus RepID=RPOM_ARCFU
          Length = 103

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241
           +CP C ++++ +        +  C+ C Y    D     +  + R + D  V+ GE+  K
Sbjct: 3   FCPKCKSLMIYQGD------KLVCRKCGYEKEADDSEELVIKVERNKEDVPVIEGENL-K 55

Query: 242 NVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            +  T A CP C +++A++   Q R+ADE    FF+C +C   WRE
Sbjct: 56  TLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101

[236][TOP]
>UniRef100_Q387Z6 RNA polymerase III C11 subunit, putative n=2 Tax=Trypanosoma brucei
           RepID=Q387Z6_9TRYP
          Length = 126

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKK----ISKMAPLARKQVDD--VLGG 226
           +CP C  +LL+E        R+ C  C YV  I  +    I+       K VDD    G 
Sbjct: 3   FCPFCGTLLLIEPAYPCN--RFSCSSCRYVVPIQSRRPLTINHSFLKYNKVVDDDDEKGS 60

Query: 227 EDAWKNVAKTDATCP--------------KCSYHQAYFMEIQTRSADEPATLFFKCVQCA 364
            +  K   K +                  +C   +A++++IQ RSADEPAT FFKC++C 
Sbjct: 61  SNTVKRGVKEEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCLKCG 120

Query: 365 HRWRE 379
            +W++
Sbjct: 121 FQWKQ 125

[237][TOP]
>UniRef100_Q8ZTX9 DNA-directed RNA polymerase subunit M n=1 Tax=Pyrobaculum
           aerophilum RepID=Q8ZTX9_PYRAE
          Length = 110

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISK--MAPLARKQVDDVLGGEDAW 238
           +CP   ++L+         LR  C  C Y   + + +     +  A +  + V+   D  
Sbjct: 3   FCPNDKSLLIPVRKGNVTVLR--CPKCGYEEEVSQDVKNRYQSKTAVESRNSVIVVADTT 60

Query: 239 KNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N+ K     CPKC + +AY    QTR+ADEP T F++C +C + WRE
Sbjct: 61  PNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108

[238][TOP]
>UniRef100_Q6LXC3 Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa
           subunit n=1 Tax=Methanococcus maripaludis
           RepID=Q6LXC3_METMP
          Length = 105

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214
           M+ +CP C N++L +       + ++ +EL    Q     Y + +KI      ++KQ   
Sbjct: 1   MVEFCPKCNNIMLPKGGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51

Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V+   D    +  T   CP C   +A++   QTR ADEP T F+KC +C+H WRE
Sbjct: 52  VIENVDT---LPTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103

[239][TOP]
>UniRef100_C1V4K5 DNA-directed RNA polymerase, subunit M n=1 Tax=Halogeometricum
           borinquense DSM 11551 RepID=C1V4K5_9EURY
          Length = 107

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVD-DVLGGEDAWK 241
           +C  C +M+      ++++ +  C  C      D  ++        Q D DV+  E+   
Sbjct: 3   FCDECGSMM------HNQDGQMVCSSCGATQEQDSDLASEFVSTEAQDDSDVIETEEGAN 56

Query: 242 NVAK---TDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWR 376
              K   TD TC  C + +A++   QT SADEP T FFKC  C  RWR
Sbjct: 57  FEGKPTATDVTCEDCGHGEAWYTIKQTGSADEPPTRFFKCKNCGRRWR 104

[240][TOP]
>UniRef100_B7XPV1 Putative uncharacterized protein n=1 Tax=Enterocytozoon bieneusi
           H348 RepID=B7XPV1_ENTBH
          Length = 95

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           CP+C + +A F E+QTRSADE  T+F++CV C H WR+
Sbjct: 57  CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEHNWRQ 94

[241][TOP]
>UniRef100_B7XNQ4 Putative uncharacterized protein n=1 Tax=Enterocytozoon bieneusi
           H348 RepID=B7XNQ4_ENTBH
          Length = 89

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 266 CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           CP+C + +A F E+QTRSADE  T+F++CV C H WR+
Sbjct: 51  CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEHNWRQ 88

[242][TOP]
>UniRef100_Q46E40 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanosarcina
           barkeri str. Fusaro RepID=Q46E40_METBF
          Length = 104

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD----VLGGED 232
           +CP C +M+      + K   + C+ C  +  I  K  + + +++ ++DD    VL GE 
Sbjct: 3   FCPKCKSMM------FPKNGNFECRKCGNIIPI--KSDEKSFVSKDKIDDHEIVVLEGEQ 54

Query: 233 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
               +  T   CP+C  + A +   Q RSADE  T FFKC +C   WRE
Sbjct: 55  I-SGLPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGFTWRE 102

[243][TOP]
>UniRef100_A7I6R8 Transcription termination factor Tfs n=1 Tax=Candidatus
           Methanoregula boonei 6A8 RepID=A7I6R8_METB6
          Length = 104

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD---VLGGEDA 235
           +CP C ++L+      S   +  C+ C Y+  I+    KM  + RK+ ++   ++  ED 
Sbjct: 2   FCPECKSLLM------SSGGQLKCRKCGYIRKIESN-DKMT-MERKRTENEITIVDDEDE 53

Query: 236 WKNVAKT-DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             N   T    CPKC  + A++   Q R+ADE    FF+C +C H WR+
Sbjct: 54  KVNTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRCTECGHTWRQ 102

[244][TOP]
>UniRef100_A6VH15 Transcription termination factor Tfs n=2 Tax=Methanococcus
           maripaludis RepID=A6VH15_METM7
          Length = 105

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214
           M+ +CP C N++L +       + ++ +EL    Q     Y + +KI      ++KQ   
Sbjct: 1   MVEFCPKCNNIMLPKAGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51

Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V+   D    +  T   CP C   +A++   QTR ADEP T F+KC +C+H WRE
Sbjct: 52  VIENVDT---LPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103

[245][TOP]
>UniRef100_A4FW95 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanococcus
           maripaludis C5 RepID=A4FW95_METM5
          Length = 105

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
 Frame = +2

Query: 56  MITYCPTCANMLLVE-------LTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDD 214
           M+ +CP C N++L +       + ++ +EL    Q     Y + +KI      ++KQ   
Sbjct: 1   MVEFCPKCNNIMLPKGGVLKCVVCKHEEELGDANQ----EYALKEKIE-----SKKQDVT 51

Query: 215 VLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
           V+   D    +  T   CP C   +A++   QTR ADEP T F+KC +C+H WRE
Sbjct: 52  VIENVDT---LPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103

[246][TOP]
>UniRef100_C7P305 Transcription termination factor Tfs n=1 Tax=Halomicrobium
           mukohataei DSM 12286 RepID=C7P305_HALMD
          Length = 107

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK-KISKMAPLARKQVDDVLGGEDAWK 241
           +C  C +M+  +  E        C+ C      D  + ++    A +  DDV+  E+   
Sbjct: 3   FCDDCGSMMHTDGDEM------VCKSCGSRVQKDADRAAEFVSTAAQSDDDVIETEEGAN 56

Query: 242 NVAKT---DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
              K    D TC  C + +A++   QT SADEP T FFKC  C +RWRE
Sbjct: 57  FEGKPTAEDVTCADCGHGKAWYTIKQTGSADEPPTRFFKCQDCGNRWRE 105

[247][TOP]
>UniRef100_Q18FG8 DNA-directed RNA polymerase subunit M2 n=2 Tax=Halobacteriaceae
           RepID=Q18FG8_HALWD
          Length = 106

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +C  C +M+        +  +  C  C Y  + D  I       ++  +D++  E+  + 
Sbjct: 3   FCDECGSMMK------KRNEQMVCGSCGYQTDQDSAIGNFVSTQKQTDEDIIETEEGAEF 56

Query: 245 VAKT---DATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
             K    +  C +C +  A++   QT SADEP T FFKC +C +RWR+
Sbjct: 57  EGKPTDDNVICDECEHTVAWYTIKQTGSADEPPTRFFKCKECGYRWRD 104

[248][TOP]
>UniRef100_Q74N12 NEQ377 n=1 Tax=Nanoarchaeum equitans RepID=Q74N12_NANEQ
          Length = 106

 Score = 57.4 bits (137), Expect = 7e-07
 Identities = 27/105 (25%), Positives = 54/105 (51%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDAWKN 244
           +CP   ++L+ +  +   +    C  C Y   +   + K     ++++   +  ++   +
Sbjct: 3   FCPKDGSILIPK--KEGDKTYLVCPVCGYKKEVTSLVIKEEVKKKEELGKGIAEKETIYS 60

Query: 245 VAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            AK    CPKCS  +  +  +QTR++DE  T+F+KC++C + WRE
Sbjct: 61  KAK-GVKCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGYTWRE 104

[249][TOP]
>UniRef100_B1YAF4 Transcription termination factor Tfs n=1 Tax=Thermoproteus
           neutrophilus V24Sta RepID=B1YAF4_THENV
          Length = 110

 Score = 57.4 bits (137), Expect = 7e-07
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +2

Query: 65  YCPTCANMLLVELTEYSKELRYFCQCCPYVYNI--DKKISKMAPLARKQVDDVLGGEDAW 238
           +CP   ++L+         LR  C  C Y      D K    +  A +  + V+   D  
Sbjct: 3   FCPNDRSLLVPVKRGDKTVLR--CPKCGYEEEASGDVKSRYQSKAAVENKNPVIVVADNP 60

Query: 239 KNVAKTDAT-CPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 379
            N+ K     CPKC + +AY    QTR+ADEP T F++C +C H WRE
Sbjct: 61  VNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGHTWRE 108

[250][TOP]
>UniRef100_UPI00015B430F PREDICTED: similar to ENSANGP00000019703 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B430F
          Length = 131

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
 Frame = +2

Query: 59  ITYCPTCANMLLVELTEYSKELRYFCQCCP----------YVYNIDKKISKMAPLARKQV 208
           I +C  C NML  +  + +K L Y C+ C           YV  I  +I ++  +    +
Sbjct: 20  IKFCQECNNMLYPKEDKENKVLMYACRNCDFKTLADSSCIYVNKIMHEIDELTHIVADVI 79

Query: 209 DDVLGGEDAWKNVAKTDA-TCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 379
            D          + +T+   CPKC++ ++ F + QTR A+E   L++ C    C HRW E
Sbjct: 80  SD--------PTLPRTEEHPCPKCNHRESVFFQAQTRRAEEEMRLYYVCTNAHCTHRWTE 131