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[1][TOP]
>UniRef100_A8HSJ0 DNA-directed RNA polymerases I/II/III subunit n=1 Tax=Chlamydomonas
reinhardtii RepID=A8HSJ0_CHLRE
Length = 79
Score = 134 bits (336), Expect = 4e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[2][TOP]
>UniRef100_B9T3C0 DNA-directed RNA polymerase II, subunit n, putative n=1 Tax=Ricinus
communis RepID=B9T3C0_RICCO
Length = 76
Score = 122 bits (307), Expect = 9e-27
Identities = 57/62 (91%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA YSE +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[3][TOP]
>UniRef100_UPI0001982A1C PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982A1C
Length = 71
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[4][TOP]
>UniRef100_Q1EP53 DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative n=1
Tax=Musa balbisiana RepID=Q1EP53_MUSBA
Length = 70
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[5][TOP]
>UniRef100_C6T2Z9 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T2Z9_SOYBN
Length = 71
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQ+ YSE +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[6][TOP]
>UniRef100_A9PF10 Predicted protein n=1 Tax=Populus trichocarpa RepID=A9PF10_POPTR
Length = 71
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[7][TOP]
>UniRef100_A9NJU8 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NJU8_PICSI
Length = 71
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[8][TOP]
>UniRef100_A7QP02 Chromosome chr1 scaffold_135, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QP02_VITVI
Length = 78
Score = 121 bits (304), Expect = 2e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[9][TOP]
>UniRef100_A9SS45 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SS45_PHYPA
Length = 73
Score = 120 bits (301), Expect = 5e-26
Identities = 56/62 (90%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA YSE +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALALVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[10][TOP]
>UniRef100_C1N0B9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N0B9_9CHLO
Length = 74
Score = 120 bits (300), Expect = 6e-26
Identities = 55/62 (88%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA YSE++ALD L L+RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSERDALDALDLNRYCCRRMLMCHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[11][TOP]
>UniRef100_Q9SYA6 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Arabidopsis thaliana RepID=RPAB5_ARATH
Length = 71
Score = 119 bits (299), Expect = 8e-26
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCGKVIGNKWDTYL+LLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[12][TOP]
>UniRef100_Q53LH8 DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q53LH8_ORYSJ
Length = 74
Score = 119 bits (298), Expect = 1e-25
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[13][TOP]
>UniRef100_Q0IPN4 Os12g0180400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0IPN4_ORYSJ
Length = 72
Score = 119 bits (298), Expect = 1e-25
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[14][TOP]
>UniRef100_C0PFY7 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0PFY7_MAIZE
Length = 242
Score = 119 bits (298), Expect = 1e-25
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +2
Query: 227 KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
KMIIPVRCFTCGKVIGNKWD YLDLLQA YSE +ALD L L RYCCRRMLMTHVDLIEKL
Sbjct: 171 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 230
Query: 407 LNY 415
LNY
Sbjct: 231 LNY 233
[15][TOP]
>UniRef100_A4S4C4 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S4C4_OSTLU
Length = 71
Score = 119 bits (298), Expect = 1e-25
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA YSE++ALD LGL+RYCCRRM+M HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSERDALDALGLNRYCCRRMVMCHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[16][TOP]
>UniRef100_C1FJT8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1FJT8_9CHLO
Length = 69
Score = 118 bits (295), Expect = 2e-25
Identities = 54/62 (87%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y+E++ALD L L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTERDALDALDLHRYCCRRMLMCHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[17][TOP]
>UniRef100_B7FTZ0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FTZ0_PHATR
Length = 73
Score = 117 bits (294), Expect = 3e-25
Identities = 54/62 (87%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKW+TYL LLQA YSE +ALD LGL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[18][TOP]
>UniRef100_B6UDG2 DNA-directed RNA polymerase II 8.2 kDa polypeptide n=1 Tax=Zea mays
RepID=B6UDG2_MAIZE
Length = 71
Score = 117 bits (294), Expect = 3e-25
Identities = 55/62 (88%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQA YSE +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDVYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[19][TOP]
>UniRef100_B6TZT5 DNA-directed RNA polymerase II 8.2 kDa polypeptide n=1 Tax=Zea mays
RepID=B6TZT5_MAIZE
Length = 84
Score = 117 bits (293), Expect = 4e-25
Identities = 55/62 (88%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQA YSE +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[20][TOP]
>UniRef100_B4FJG4 DNA-directed RNA polymerase II 8.2 kDa polypeptide n=2
Tax=Andropogoneae RepID=B4FJG4_MAIZE
Length = 71
Score = 117 bits (293), Expect = 4e-25
Identities = 55/62 (88%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQA YSE +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[21][TOP]
>UniRef100_B8C402 DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein
(Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8C402_THAPS
Length = 64
Score = 115 bits (288), Expect = 2e-24
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKW+TYL LLQA YSE +ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[22][TOP]
>UniRef100_Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Brassica napus RepID=RPAB5_BRANA
Length = 71
Score = 115 bits (288), Expect = 2e-24
Identities = 53/62 (85%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQ Y+E +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[23][TOP]
>UniRef100_Q8LFJ6 RNA polymerase II subunit (HsRPB10), putative n=1 Tax=Arabidopsis
thaliana RepID=Q8LFJ6_ARATH
Length = 71
Score = 114 bits (285), Expect = 3e-24
Identities = 53/62 (85%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YLDLLQ Y+E +ALD L L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[24][TOP]
>UniRef100_B9G9U1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9G9U1_ORYSJ
Length = 74
Score = 114 bits (285), Expect = 3e-24
Identities = 54/62 (87%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNK D YLDLLQA Y+E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKGDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[25][TOP]
>UniRef100_UPI0001926189 PREDICTED: similar to DNA-directed RNA polymerases I, II, and III
subunit RPABC5 n=1 Tax=Hydra magnipapillata
RepID=UPI0001926189
Length = 67
Score = 113 bits (283), Expect = 6e-24
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+GNKW++YL LLQA YSE +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWESYLGLLQAEYSEGDALDSLGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[26][TOP]
>UniRef100_UPI0000E48653 PREDICTED: similar to RNA polymerase II subunit n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48653
Length = 67
Score = 113 bits (283), Expect = 6e-24
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKV+GNKW+ YL LLQA YSE +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVVGNKWEAYLGLLQAEYSEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[27][TOP]
>UniRef100_C5KAN5 DNA-directed RNA polymerase subunit N, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5KAN5_9ALVE
Length = 69
Score = 113 bits (282), Expect = 7e-24
Identities = 51/62 (82%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKWDTYL+LLQ G SE +AL LG+ RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDTYLNLLQEGKSEGQALTELGMERYCCRRMLLTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[28][TOP]
>UniRef100_Q1ECU1 MGC146599 protein n=1 Tax=Xenopus (Silurana) tropicalis
RepID=Q1ECU1_XENTR
Length = 67
Score = 112 bits (281), Expect = 1e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKV+GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[29][TOP]
>UniRef100_B3RID1 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RID1_TRIAD
Length = 67
Score = 112 bits (281), Expect = 1e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWEAYLHLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[30][TOP]
>UniRef100_A5D6S6 Zgc:112305 protein n=2 Tax=Clupeocephala RepID=A5D6S6_DANRE
Length = 67
Score = 112 bits (280), Expect = 1e-23
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[31][TOP]
>UniRef100_C5Y6P3 Putative uncharacterized protein Sb05g005840 n=1 Tax=Sorghum
bicolor RepID=C5Y6P3_SORBI
Length = 73
Score = 112 bits (280), Expect = 1e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIG+KWD YL+L+QA Y E++AL L L+RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[32][TOP]
>UniRef100_C3Y645 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Y645_BRAFL
Length = 68
Score = 112 bits (280), Expect = 1e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWEWYLGLLQADYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[33][TOP]
>UniRef100_B4NL38 GK14032 n=1 Tax=Drosophila willistoni RepID=B4NL38_DROWI
Length = 67
Score = 112 bits (280), Expect = 1e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKW++YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQADYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[34][TOP]
>UniRef100_A7SLP4 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SLP4_NEMVE
Length = 67
Score = 112 bits (280), Expect = 1e-23
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[35][TOP]
>UniRef100_UPI00015B63F1 RNA polymerase II subunit 10 n=1 Tax=Nasonia vitripennis
RepID=UPI00015B63F1
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDSLGLKRYCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[36][TOP]
>UniRef100_UPI0000022BA0 PREDICTED: similar to RNA polymerase II subunit n=1 Tax=Mus
musculus RepID=UPI0000022BA0
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAKYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[37][TOP]
>UniRef100_UPI0001B7C0A8 Ab1-108. n=1 Tax=Rattus norvegicus RepID=UPI0001B7C0A8
Length = 331
Score = 112 bits (279), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 265 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 324
Query: 410 NY 415
NY
Sbjct: 325 NY 326
[38][TOP]
>UniRef100_UPI000001372F UPI000001372F related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001372F
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[39][TOP]
>UniRef100_Q7TPA2 Ab1-108 n=1 Tax=Rattus norvegicus RepID=Q7TPA2_RAT
Length = 323
Score = 112 bits (279), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 257 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 316
Query: 410 NY 415
NY
Sbjct: 317 NY 318
[40][TOP]
>UniRef100_B0WG50 DNA-directed RNA polymerase II 7.6 kDa polypeptide n=5
Tax=Arthropoda RepID=B0WG50_CULQU
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[41][TOP]
>UniRef100_Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=11
Tax=Drosophila RepID=RPAB5_DROME
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKW++YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[42][TOP]
>UniRef100_P62875 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=11
Tax=Euteleostomi RepID=RPAB5_HUMAN
Length = 67
Score = 112 bits (279), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[43][TOP]
>UniRef100_UPI00006A4791 PREDICTED: similar to MGC146599 protein n=1 Tax=Ciona intestinalis
RepID=UPI00006A4791
Length = 67
Score = 111 bits (278), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+GNKWD YL LLQ Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWDKYLGLLQQEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[44][TOP]
>UniRef100_Q502D4 Zgc:112305 protein n=1 Tax=Danio rerio RepID=Q502D4_DANRE
Length = 67
Score = 111 bits (278), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLPHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[45][TOP]
>UniRef100_Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1
Tax=Dictyostelium discoideum RepID=RPAB5_DICDI
Length = 70
Score = 111 bits (278), Expect = 2e-23
Identities = 51/62 (82%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGNKWD YL LLQ Y+E +ALD L L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[46][TOP]
>UniRef100_B5FYX8 Putative DNA directed RNA polymerase II polypeptide L variant 1 n=1
Tax=Taeniopygia guttata RepID=B5FYX8_TAEGU
Length = 67
Score = 110 bits (276), Expect = 4e-23
Identities = 48/62 (77%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E +ALD LGL RYCCR+ML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRKMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[47][TOP]
>UniRef100_Q4SI58 Chromosome 5 SCAF14581, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4SI58_TETNG
Length = 67
Score = 110 bits (275), Expect = 5e-23
Identities = 47/62 (75%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK++GNKW+ YL LLQ+ Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWEAYLRLLQSEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[48][TOP]
>UniRef100_Q9GR61 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=2
Tax=Caenorhabditis RepID=RPAB5_CAEEL
Length = 67
Score = 110 bits (275), Expect = 5e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIG+KW+TYL LQ+ YSE +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[49][TOP]
>UniRef100_UPI0001791AD9 PREDICTED: similar to DNA-directed RNA polymerases I, II, and III
subunit RPABC5 (RNA polymerases I, II, and III subunit
ABC5) (RPB10) n=1 Tax=Acyrthosiphon pisum
RepID=UPI0001791AD9
Length = 67
Score = 109 bits (273), Expect = 8e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVI NKW++YL LLQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIANKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[50][TOP]
>UniRef100_B5XBF2 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Salmo salar RepID=B5XBF2_SALSA
Length = 67
Score = 109 bits (272), Expect = 1e-22
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LQA Y+E +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGPLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[51][TOP]
>UniRef100_C4PZC4 DNA-directed rna polymerase II, subunit n, putative n=2
Tax=Schistosoma RepID=C4PZC4_SCHMA
Length = 67
Score = 108 bits (271), Expect = 1e-22
Identities = 47/62 (75%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+G+KW++Y+ LLQA Y+E +ALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYIGLLQAEYAEGDALDTLGLRRYCCRRMLLSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[52][TOP]
>UniRef100_Q8MPD0 Putative RNA polymerase subunit n=1 Tax=Taenia solium
RepID=Q8MPD0_TAESO
Length = 67
Score = 108 bits (270), Expect = 2e-22
Identities = 47/62 (75%), Positives = 57/62 (91%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+G+KW++YL LLQA Y+E +ALD LGL RYCCRRM+++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYLVLLQAEYTEADALDTLGLRRYCCRRMILSHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[53][TOP]
>UniRef100_A8ND17 DNA-directed RNA polymerase II 7.6 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8ND17_BRUMA
Length = 67
Score = 108 bits (269), Expect = 2e-22
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIGNKWD YL LLQA YSE +ALD L L RYCCRRML++HVDLI KLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDAYLGLLQAEYSEGDALDALNLRRYCCRRMLLSHVDLIVKLL 60
Query: 410 NY 415
+Y
Sbjct: 61 DY 62
[54][TOP]
>UniRef100_Q98S56 Putative RNA polymerase II subunit Rpb10 n=1 Tax=Guillardia theta
RepID=Q98S56_GUITH
Length = 71
Score = 107 bits (268), Expect = 3e-22
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK+IGNKW+ YL LL YSE ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIIGNKWEIYLRLLNENYSESSALDTLGLQRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 QY 62
[55][TOP]
>UniRef100_UPI000021E311 PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) n=1 Tax=Rattus
norvegicus RepID=UPI000021E311
Length = 67
Score = 106 bits (265), Expect = 7e-22
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ YL LLQA Y+E ALD LGL YCCRR+L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGHALDALGLKCYCCRRVLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[56][TOP]
>UniRef100_C1BQB9 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Caligus rogercresseyi RepID=C1BQB9_9MAXI
Length = 67
Score = 106 bits (265), Expect = 7e-22
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK+IGNKW+ YL LLQA Y+E +ALD LGL R CCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKLIGNKWEAYLGLLQAEYTEGDALDALGLKRPCCRRMLLGHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[57][TOP]
>UniRef100_A4UHB3 DNA-directed RNA polymerase n=1 Tax=Alexandrium fundyense
RepID=A4UHB3_ALEFU
Length = 82
Score = 105 bits (263), Expect = 1e-21
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RC++CGK+IGNKW+ YL +LQ+ SE+E LD LGL+RYCCRRML+THVDLIEK++
Sbjct: 1 MIIPIRCYSCGKLIGNKWERYLQMLQSEMSEKEVLDALGLNRYCCRRMLLTHVDLIEKVM 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[58][TOP]
>UniRef100_B6JYU5 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYU5_SCHJY
Length = 71
Score = 105 bits (263), Expect = 1e-21
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIG+KWDTYL LLQ +E EALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 CY 62
[59][TOP]
>UniRef100_A9BK30 Rpb10 n=1 Tax=Cryptophyta RepID=A9BK30_9CRYP
Length = 80
Score = 105 bits (262), Expect = 2e-21
Identities = 46/62 (74%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK+IGNKWD Y++LL S+ ALD LGL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIIGNKWDIYIELLNKNISQSAALDSLGLRRYCCRRMLLTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 AY 62
[60][TOP]
>UniRef100_O13877 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB5_SCHPO
Length = 71
Score = 105 bits (262), Expect = 2e-21
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCF+CGKVIG+KWDTYL LLQ +E EALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 CY 62
[61][TOP]
>UniRef100_Q5KMS2 DNA-directed RNA polymerases i, ii, and iii 8.3 kDa polypeptide,
putative n=1 Tax=Filobasidiella neoformans
RepID=Q5KMS2_CRYNE
Length = 69
Score = 103 bits (256), Expect = 8e-21
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIGN WD+YL+LL AG E EA+D L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNLWDSYLELLAAGVDEGEAMDKLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 MY 62
[62][TOP]
>UniRef100_UPI0000DA42E6 PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) n=1 Tax=Rattus
norvegicus RepID=UPI0000DA42E6
Length = 67
Score = 102 bits (254), Expect = 1e-20
Identities = 46/62 (74%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFT GK++GNKW+ YL LLQA Y+E ALD LGL YCCRR+L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTWGKIVGNKWEAYLGLLQAEYTEGHALDALGLKCYCCRRVLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[63][TOP]
>UniRef100_A0D0A0 Chromosome undetermined scaffold_33, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D0A0_PARTE
Length = 68
Score = 101 bits (251), Expect = 3e-20
Identities = 44/62 (70%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+G+ W Y+ LLQ G + EALD LGL RYCCRRM++THVDLI+KLL
Sbjct: 1 MIIPIRCFTCGKVVGHLWSDYVQLLQDGVTTGEALDRLGLERYCCRRMILTHVDLIDKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[64][TOP]
>UniRef100_UPI0000DA24CB PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) n=1 Tax=Rattus
norvegicus RepID=UPI0000DA24CB
Length = 67
Score = 100 bits (250), Expect = 4e-20
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPV CFTCGK+IGNKW+ YL LLQA Y+E +ALD L L RYCCR ML+ H DLIEKLL
Sbjct: 1 MIIPVCCFTCGKIIGNKWEAYLGLLQAMYTEGDALDTLDLKRYCCRCMLLAHADLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[65][TOP]
>UniRef100_UPI0000022F74 PREDICTED: similar to RNA polymerase II subunit n=1 Tax=Mus
musculus RepID=UPI0000022F74
Length = 67
Score = 100 bits (250), Expect = 4e-20
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF CGK +GNK + YL LLQA Y+E +ALD LGL RYCCRR L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFICGKTVGNKREAYLGLLQAEYTEGDALDALGLKRYCCRRTLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[66][TOP]
>UniRef100_A0DC00 Chromosome undetermined scaffold_45, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DC00_PARTE
Length = 68
Score = 100 bits (248), Expect = 7e-20
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKV+G+ W Y+ LLQ G + E+LD LGL RYCCRRM++THVDLI+KLL
Sbjct: 1 MIIPIRCFTCGKVVGHLWSDYVQLLQDGVTTGESLDRLGLERYCCRRMILTHVDLIDKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[67][TOP]
>UniRef100_C4R009 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II,
and III n=1 Tax=Pichia pastoris GS115 RepID=C4R009_PICPG
Length = 72
Score = 99.4 bits (246), Expect = 1e-19
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+KWD YL LL+ G E +ALD L L RYCCRRM++THVDLIEK L
Sbjct: 1 MIIPVRCFSCGKVVGDKWDAYLRLLEEGKQEGDALDELKLKRYCCRRMVLTHVDLIEKFL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[68][TOP]
>UniRef100_B8BNG5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BNG5_ORYSI
Length = 114
Score = 99.0 bits (245), Expect = 1e-19
Identities = 55/104 (52%), Positives = 57/104 (54%), Gaps = 42/104 (40%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSE----------------------------- 322
MIIPVRCFTCGKVIGNKWD YLDLLQA Y+E
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGR 60
Query: 323 -------------QEALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
+ALD LGL RYCCRRMLMTHVDLIEKLLNY
Sbjct: 61 RLADGDADLSVHMWDALDALGLVRYCCRRMLMTHVDLIEKLLNY 104
[69][TOP]
>UniRef100_B0DBE9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DBE9_LACBS
Length = 75
Score = 99.0 bits (245), Expect = 1e-19
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIG+KW YL+LL SE +ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWSAYLELLAKDVSEGDALDELQLKRYCCRRMVLTHVDLIEKLL 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[70][TOP]
>UniRef100_A8N985 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N985_COPC7
Length = 478
Score = 99.0 bits (245), Expect = 1e-19
Identities = 45/62 (72%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIG+KW+ YL+LL SE +ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNPYLELLAKDMSEGDALDELQLKRYCCRRMVLTHVDLIEKLL 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[71][TOP]
>UniRef100_B6AD79 DNA-directed RNA polymerases I, II, and III subunit ABC5, putative
n=1 Tax=Cryptosporidium muris RN66 RepID=B6AD79_9CRYT
Length = 72
Score = 98.6 bits (244), Expect = 2e-19
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGN W +L LLQ SE EALD LGL RYCCRRM++TH DLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNLWQQWLVLLQNDVSEGEALDKLGLRRYCCRRMVLTHADLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 AY 62
[72][TOP]
>UniRef100_B5FVB1 YALI0B04851p n=1 Tax=Yarrowia lipolytica RepID=B5FVB1_YARLI
Length = 105
Score = 98.6 bits (244), Expect = 2e-19
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+KW+TYL LQ SE +ALD L L RYCCRRM++THVDLIEK L
Sbjct: 35 MIIPVRCFSCGKVVGDKWETYLTYLQDDMSEGDALDKLELKRYCCRRMILTHVDLIEKFL 94
Query: 410 NY 415
Y
Sbjct: 95 RY 96
[73][TOP]
>UniRef100_UPI000194C523 PREDICTED: similar to Ab1-108 n=1 Tax=Taeniopygia guttata
RepID=UPI000194C523
Length = 67
Score = 97.8 bits (242), Expect = 3e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK++GNKW+ +L + + +ALD LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAFLGSCRRSTRKGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[74][TOP]
>UniRef100_Q0UIS5 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UIS5_PHANO
Length = 77
Score = 97.8 bits (242), Expect = 3e-19
Identities = 40/62 (64%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+P+RCF+CGKV+G+ W+ Y+DLL +E +ALD +GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVVGDLWEKYMDLLTEEMAEGDALDAIGLQRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[75][TOP]
>UniRef100_C1GGT3 DNA-directed RNA polymerases N/8 kDa subunit superfamily protein
n=1 Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GGT3_PARBD
Length = 173
Score = 97.8 bits (242), Expect = 3e-19
Identities = 44/65 (67%), Positives = 51/65 (78%)
Frame = +2
Query: 221 R*KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIE 400
R MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRMLMTHVDLIE
Sbjct: 97 RFNMIIPVRCFSCGKVVGDLWERYLKLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIE 156
Query: 401 KLLNY 415
KLL Y
Sbjct: 157 KLLRY 161
[76][TOP]
>UniRef100_C0SH45 DNA-directed RNA polymerases I/II/III subunit 10 n=4 Tax=Onygenales
RepID=C0SH45_PARBP
Length = 74
Score = 97.4 bits (241), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLKLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[77][TOP]
>UniRef100_Q4N5Q3 DNA-directed RNA polymerase subunit N, putative n=1 Tax=Theileria
parva RepID=Q4N5Q3_THEPA
Length = 87
Score = 97.1 bits (240), Expect = 6e-19
Identities = 43/62 (69%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIG+ W+ +L++L+ E +ALD LGL+RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKDIPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[78][TOP]
>UniRef100_Q4P3X6 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P3X6_USTMA
Length = 155
Score = 97.1 bits (240), Expect = 6e-19
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIG+KW+ YL LL G +E EAL L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLL 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[79][TOP]
>UniRef100_A8PYD2 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8PYD2_MALGO
Length = 83
Score = 97.1 bits (240), Expect = 6e-19
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKVIG+KWD YL LL G +E EAL L L RYCCRRM++THVDLIE+LL
Sbjct: 1 MIIPVRCFSCGKVIGDKWDAYLALLIEGRTEGEALTELQLHRYCCRRMVLTHVDLIERLL 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[80][TOP]
>UniRef100_A1CFY2 DNA-directed RNA polymerases N/8 kDa subunit superfamily n=2
Tax=Trichocomaceae RepID=A1CFY2_ASPCL
Length = 74
Score = 97.1 bits (240), Expect = 6e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDEGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[81][TOP]
>UniRef100_Q3LWJ6 RNA polymerase II subunit RPB10 n=1 Tax=Bigelowiella natans
RepID=Q3LWJ6_BIGNA
Length = 65
Score = 96.7 bits (239), Expect = 7e-19
Identities = 40/62 (64%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IP+RCF+CGKVI W YL+L++ G+SE E+LD L ++RYCCRRML++HVD+IEKLL
Sbjct: 1 MLIPIRCFSCGKVIAGSWLEYLELIKIGFSEGESLDALRMNRYCCRRMLLSHVDIIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[82][TOP]
>UniRef100_A3FQL9 Putative DNA-directed RNA polymerases I, II, and III 8.3 kDa
polypeptide (Fragment) n=1 Tax=Cryptosporidium parvum
Iowa II RepID=A3FQL9_CRYPV
Length = 72
Score = 96.7 bits (239), Expect = 7e-19
Identities = 45/62 (72%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIGN W +L LLQ E EALD LGL RYCCRRM++TH DLIEKL+
Sbjct: 1 MIIPVRCFTCGKVIGNLWQPWLVLLQNNVPEGEALDKLGLRRYCCRRMILTHADLIEKLM 60
Query: 410 NY 415
Y
Sbjct: 61 AY 62
[83][TOP]
>UniRef100_C9SH58 DNA-directed RNA polymerases I/II/III subunit 10 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SH58_9PEZI
Length = 76
Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV G+ W+ YL L+ G ++ +A+D LGL RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDLWERYLKLIDDGIADGDAMDELGLKRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[84][TOP]
>UniRef100_C5G068 DNA-directed RNA polymerase N/8 kDa subunit n=1 Tax=Microsporum
canis CBS 113480 RepID=C5G068_NANOT
Length = 74
Score = 96.7 bits (239), Expect = 7e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLRLLDDGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[85][TOP]
>UniRef100_B6QUX0 DNA-directed RNA polymerases N/8 kDa subunit superfamily n=1
Tax=Penicillium marneffei ATCC 18224 RepID=B6QUX0_PENMQ
Length = 74
Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDEGVPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[86][TOP]
>UniRef100_B2WEA7 DNA-directed RNA polymerases N/8 kDa subunit superfamily n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WEA7_PYRTR
Length = 77
Score = 96.7 bits (239), Expect = 7e-19
Identities = 40/62 (64%), Positives = 51/62 (82%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+P+RCF+CGKV G+ W+ Y++LL G E +ALD +GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVTGDLWEKYMNLLSDGAEEADALDAVGLQRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[87][TOP]
>UniRef100_B0YC71 DNA-directed RNA polymerases N/8 kDa subunit superfamily n=2
Tax=Aspergillus fumigatus RepID=B0YC71_ASPFC
Length = 140
Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[88][TOP]
>UniRef100_A4RLD2 DNA-directed RNA polymerase II chain RPB10, putative n=1
Tax=Magnaporthe grisea RepID=A4RLD2_MAGGR
Length = 78
Score = 96.7 bits (239), Expect = 7e-19
Identities = 40/62 (64%), Positives = 52/62 (83%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCF+CGKV G+ W+ +L+L+ +G S+ +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERFLNLIDSGMSDGDAMDALGCKRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[89][TOP]
>UniRef100_C8VH91 DNA-directed RNA polymerases N/8 kDa subunit superfamily
(AFU_orthologue; AFUA_7G02620) n=1 Tax=Aspergillus
nidulans FGSC A4 RepID=C8VH91_EMENI
Length = 74
Score = 96.3 bits (238), Expect = 9e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[90][TOP]
>UniRef100_C5M2J2 DNA-directed RNA polymerases II subunit n=1 Tax=Candida tropicalis
MYA-3404 RepID=C5M2J2_CANTT
Length = 72
Score = 96.3 bits (238), Expect = 9e-19
Identities = 44/63 (69%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ-AGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+KW+TYL+LLQ SE +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLELLQDETISEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[91][TOP]
>UniRef100_B8MTW2 DNA-directed RNA polymerases N/8 kDa subunit superfamily n=1
Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MTW2_TALSN
Length = 74
Score = 96.3 bits (238), Expect = 9e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGVPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[92][TOP]
>UniRef100_B6HKG6 Pc21g11480 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HKG6_PENCW
Length = 74
Score = 96.3 bits (238), Expect = 9e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV+G+ W+ YL LL G + +A+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGVPDGDAMDQLGCRRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[93][TOP]
>UniRef100_UPI00017F02E3 PREDICTED: similar to DNA directed RNA polymerase II polypeptide L
n=1 Tax=Sus scrofa RepID=UPI00017F02E3
Length = 67
Score = 95.9 bits (237), Expect = 1e-18
Identities = 40/62 (64%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M IPV CF CGK++ N W+ YL LLQA Y+E++ALD LGL +YCCR ML+ ++DLIEKLL
Sbjct: 1 MTIPVHCFMCGKIVSNTWEAYLGLLQAKYTEEDALDALGLKQYCCRHMLLAYMDLIEKLL 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[94][TOP]
>UniRef100_A7AN58 RNA polymerases N / 8 kDa subunit family protein n=1 Tax=Babesia
bovis RepID=A7AN58_BABBO
Length = 73
Score = 95.5 bits (236), Expect = 2e-18
Identities = 42/62 (67%), Positives = 53/62 (85%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVIG+ W+ +L+LL+ +E +ALD L L+RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGHLWEQWLELLKQNVNEGDALDRLDLTRYCCRRMILTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[95][TOP]
>UniRef100_C4YHE9 DNA-directed RNA polymerases I/II/III subunit 10 n=2 Tax=Candida
RepID=C4YHE9_CANAL
Length = 72
Score = 95.1 bits (235), Expect = 2e-18
Identities = 44/63 (69%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ-AGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+KW TYLD LQ SE +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWQTYLDYLQDETLSEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[96][TOP]
>UniRef100_A3GGI8 DNA-directed RNA Polymerase II subunit L n=1 Tax=Pichia stipitis
RepID=A3GGI8_PICST
Length = 72
Score = 94.0 bits (232), Expect = 5e-18
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ-AGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+KW+TYL+ LQ +E +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDESMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[97][TOP]
>UniRef100_UPI000187D34F hypothetical protein MPER_07033 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187D34F
Length = 70
Score = 93.6 bits (231), Expect = 6e-18
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +2
Query: 245 RCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
RCFTCGKVIG+KW+TYLDLL +E +ALD L L RYCCRRM++THVDLIEKLL+Y
Sbjct: 1 RCFTCGKVIGDKWNTYLDLLAKDIAEGDALDELQLRRYCCRRMVLTHVDLIEKLLHY 57
[98][TOP]
>UniRef100_Q6BHF3 DEHA2G19052p n=1 Tax=Debaryomyces hansenii RepID=Q6BHF3_DEBHA
Length = 72
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIPVRCF+CGKV+G+KW+TYL+ LQ +E +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPVRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLQRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[99][TOP]
>UniRef100_A5E442 DNA-directed RNA polymerases I/II/III subunit 10 n=1
Tax=Lodderomyces elongisporus RepID=A5E442_LODEL
Length = 72
Score = 93.2 bits (230), Expect = 8e-18
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ-AGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+KW+TYL+ LQ +E +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDETMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[100][TOP]
>UniRef100_P22139 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=4
Tax=Saccharomyces cerevisiae RepID=RPAB5_YEAST
Length = 70
Score = 93.2 bits (230), Expect = 8e-18
Identities = 42/63 (66%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW++YL+LLQ E AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[101][TOP]
>UniRef100_A7TKR3 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TKR3_VANPO
Length = 70
Score = 92.8 bits (229), Expect = 1e-17
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW++YL++LQ E AL LGL+RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALSRLGLTRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[102][TOP]
>UniRef100_A5DLA1 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DLA1_PICGU
Length = 72
Score = 92.8 bits (229), Expect = 1e-17
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+KW+TYL+ LQ +E +ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLRRYCCRRMVLTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[103][TOP]
>UniRef100_B4UN44 Similar to uniprot|P22139 Saccharomyces cerevisiae YOR210w RPB10
n=1 Tax=Candida glabrata RepID=B4UN44_CANGA
Length = 70
Score = 92.4 bits (228), Expect = 1e-17
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW++YL++LQ E AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[104][TOP]
>UniRef100_A6RMH2 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6RMH2_BOTFB
Length = 76
Score = 92.4 bits (228), Expect = 1e-17
Identities = 40/62 (64%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+CGKV G+ W+ Y+ L+ G ++ +A+D L L RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDIWERYVKLIDEGVNDGDAMDELTLKRYCCRRMIMTHVDLIEKLL 60
Query: 410 NY 415
Y
Sbjct: 61 RY 62
[105][TOP]
>UniRef100_C5DXM4 ZYRO0F06226p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DXM4_ZYGRC
Length = 70
Score = 92.0 bits (227), Expect = 2e-17
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW++YL++LQ E AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALTKLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[106][TOP]
>UniRef100_C5DEV5 KLTH0D10076p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DEV5_LACTC
Length = 70
Score = 92.0 bits (227), Expect = 2e-17
Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW+ YL++LQ E AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[107][TOP]
>UniRef100_B6KU00 DNA-directed RNA polymerase II, 8.2 kDa polypeptide, putative n=3
Tax=Toxoplasma gondii RepID=B6KU00_TOXGO
Length = 72
Score = 91.7 bits (226), Expect = 2e-17
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGKVI + W+ ++D++ E EALD LGL RYCCRRML+TH DLI+KLL
Sbjct: 1 MIIPIRCFTCGKVIAHLWEKWIDMIDEDRPEGEALDILGLDRYCCRRMLLTHADLIDKLL 60
Query: 410 NY 415
Y
Sbjct: 61 AY 62
[108][TOP]
>UniRef100_Q7SG15 DNA-directed RNA polymerases I/II/III subunit 10 n=1 Tax=Neurospora
crassa RepID=Q7SG15_NEUCR
Length = 84
Score = 91.7 bits (226), Expect = 2e-17
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV+G+ W+ YL L+ ++ +ALD LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLQLIDGEEITDGDALDQLGLKRYCCRRMVMTHVDLIEKL 60
Query: 407 LNY 415
L Y
Sbjct: 61 LKY 63
[109][TOP]
>UniRef100_Q6CRT0 KLLA0D06699p n=1 Tax=Kluyveromyces lactis RepID=Q6CRT0_KLULA
Length = 70
Score = 91.7 bits (226), Expect = 2e-17
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQ-EALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW+ YL++LQ E+ AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[110][TOP]
>UniRef100_Q75BV8 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Eremothecium gossypii RepID=RPAB5_ASHGO
Length = 70
Score = 91.7 bits (226), Expect = 2e-17
Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MI+PVRCF+CGKV+G+KW+ YL++LQ E AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 407 LNY 415
L Y
Sbjct: 61 LRY 63
[111][TOP]
>UniRef100_B2AA22 Predicted CDS Pa_1_2560 n=1 Tax=Podospora anserina
RepID=B2AA22_PODAN
Length = 82
Score = 90.9 bits (224), Expect = 4e-17
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ-AGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIPVRCF+CGKV+G+ W+ ++ L++ G ++ EALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPVRCFSCGKVVGDLWEKFVVLIEDRGLADGEALDELGCKRYCCRRMVMTHVDLIEKL 60
Query: 407 LNY 415
L Y
Sbjct: 61 LKY 63
[112][TOP]
>UniRef100_Q4XQK0 DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative n=3
Tax=Plasmodium (Vinckeia) RepID=Q4XQK0_PLACH
Length = 69
Score = 89.7 bits (221), Expect = 9e-17
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK+IGN W Y L G S+ +ALD L LSRYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 60
Query: 410 NY 415
Y
Sbjct: 61 CY 62
[113][TOP]
>UniRef100_Q2HDK3 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2HDK3_CHAGB
Length = 82
Score = 89.7 bits (221), Expect = 9e-17
Identities = 40/63 (63%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQA-GYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCF+CGKV G+ W+ ++ L++ G S+ +ALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEDGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 407 LNY 415
L Y
Sbjct: 61 LKY 63
[114][TOP]
>UniRef100_B3KZ26 DNA-directed RNA polymerase 2, 8.2 kDa polypeptide, putative n=2
Tax=Plasmodium (Plasmodium) RepID=B3KZ26_PLAKH
Length = 69
Score = 89.4 bits (220), Expect = 1e-16
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK+IGN W Y L+ G S+ +ALD L L+RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLEEGVSKCDALDELNLTRYCCRRMILTHADMMDKLL 60
Query: 410 NY 415
Y
Sbjct: 61 CY 62
[115][TOP]
>UniRef100_A4HE74 DNA-directed RNA polymerase ii n=1 Tax=Leishmania braziliensis
RepID=A4HE74_LEIBR
Length = 84
Score = 87.8 bits (216), Expect = 3e-16
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRC++CGKV+GN ++ Y LL Y+E EALD L L RYCCRRM+++H+DLI+ L+
Sbjct: 1 MIIPVRCYSCGKVVGNLYEQYQRLLDQDYTESEALDALHLDRYCCRRMILSHIDLIDDLI 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[116][TOP]
>UniRef100_Q4YSS8 Putative uncharacterized protein n=1 Tax=Plasmodium berghei
RepID=Q4YSS8_PLABE
Length = 68
Score = 87.4 bits (215), Expect = 4e-16
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK+IGN W Y + L G S+ +ALD L LSRYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLY-EKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 59
Query: 410 NY 415
Y
Sbjct: 60 CY 61
[117][TOP]
>UniRef100_Q8IC08 DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative n=1
Tax=Plasmodium falciparum 3D7 RepID=Q8IC08_PLAF7
Length = 69
Score = 86.7 bits (213), Expect = 8e-16
Identities = 38/62 (61%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK+IGN W Y L+ G S+ +AL+ L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 410 NY 415
Y
Sbjct: 61 CY 62
[118][TOP]
>UniRef100_A8BAL6 DNA-directed RNA polymerase RPB10 n=1 Tax=Giardia lamblia ATCC
50803 RepID=A8BAL6_GIALA
Length = 122
Score = 86.7 bits (213), Expect = 8e-16
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 10/83 (12%)
Frame = +2
Query: 197 LAGPAAPGR*K-MIIPVRCFTCGKVIGNKWDTYLDLL------QAGYSE---QEALDGLG 346
++G A P K MIIPVRCFTCGKVIG+ ++ YL LL ++G SE + ALD LG
Sbjct: 27 VSGRAIPMHQKIMIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELG 86
Query: 347 LSRYCCRRMLMTHVDLIEKLLNY 415
L+RYCCRRML+THVDLI+ LL Y
Sbjct: 87 LTRYCCRRMLLTHVDLIDDLLLY 109
[119][TOP]
>UniRef100_Q8MUU5 RNA polymerase II subunit Rpb10 n=1 Tax=Giardia intestinalis
RepID=Q8MUU5_GIALA
Length = 84
Score = 85.9 bits (211), Expect = 1e-15
Identities = 45/71 (63%), Positives = 54/71 (76%), Gaps = 9/71 (12%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLL------QAGYSE---QEALDGLGLSRYCCRRMLMT 382
MIIPVRCFTCGKVIG+ ++ YL LL ++G SE + ALD LGL+RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 60
Query: 383 HVDLIEKLLNY 415
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLY 71
[120][TOP]
>UniRef100_Q4D7L7 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
cruzi RepID=Q4D7L7_TRYCR
Length = 84
Score = 85.5 bits (210), Expect = 2e-15
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IPVRC++CGKVIGN ++TY LL Y+E EAL+ L L R CCRRM+++H+DL++ LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYETYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDDLL 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[121][TOP]
>UniRef100_UPI000150A5EB RNA polymerases N / 8 kDa subunit family protein n=1
Tax=Tetrahymena thermophila RepID=UPI000150A5EB
Length = 73
Score = 85.1 bits (209), Expect = 2e-15
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE----ALDGLGLSRYCCRRMLMTHVDLI 397
MIIPVRCFTCGKV+G+ W+ +L ++ ++ ALD L L+RYCCRRM++TH DLI
Sbjct: 1 MIIPVRCFTCGKVVGHMWNDFLQMISESNPNKKDMKSALDELRLNRYCCRRMILTHCDLI 60
Query: 398 EKLLNY 415
+KLLNY
Sbjct: 61 DKLLNY 66
[122][TOP]
>UniRef100_B5IVP8 RNA polymerases N / 8 kDa subunit superfamily n=1 Tax=Thermococcus
barophilus MP RepID=B5IVP8_9EURY
Length = 65
Score = 84.3 bits (207), Expect = 4e-15
Identities = 35/62 (56%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCGKVIG+K+ + + ++ G ++ LD LGL RYCCRRML+THV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYIFKERVENGEDPEKVLDDLGLERYCCRRMLLTHVELIDDIM 60
Query: 410 NY 415
Y
Sbjct: 61 QY 62
[123][TOP]
>UniRef100_O59298 DNA-directed RNA polymerase subunit N n=1 Tax=Pyrococcus horikoshii
RepID=RPON_PYRHO
Length = 65
Score = 84.3 bits (207), Expect = 4e-15
Identities = 36/62 (58%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGKVIG+K+ + ++AG ++ LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[124][TOP]
>UniRef100_Q4CTY7 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
cruzi RepID=Q4CTY7_TRYCR
Length = 84
Score = 84.0 bits (206), Expect = 5e-15
Identities = 35/62 (56%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IPVRC++CGKVIGN ++ Y LL Y+E EAL+ L L R CCRRM+++H+DL+++LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYEKYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDELL 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[125][TOP]
>UniRef100_P60291 DNA-directed RNA polymerase subunit N n=2 Tax=Pyrococcus
RepID=RPON_PYRAB
Length = 65
Score = 84.0 bits (206), Expect = 5e-15
Identities = 35/62 (56%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCGKVIG+K+ + ++AG ++ LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[126][TOP]
>UniRef100_Q8SRS6 DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1
Tax=Encephalitozoon cuniculi RepID=RPAB5_ENCCU
Length = 72
Score = 84.0 bits (206), Expect = 5e-15
Identities = 35/62 (56%), Positives = 47/62 (75%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK I +KW+ Y +LL+ + EALD LG+ R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[127][TOP]
>UniRef100_Q96YW4 DNA-directed RNA polymerase subunit N n=1 Tax=Sulfolobus tokodaii
RepID=RPON_SULTO
Length = 66
Score = 83.2 bits (204), Expect = 8e-15
Identities = 32/62 (51%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCG +IG+KW+ ++ + G + LD LG+ RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[128][TOP]
>UniRef100_Q4QG42 DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative n=1
Tax=Leishmania major RepID=Q4QG42_LEIMA
Length = 89
Score = 82.8 bits (203), Expect = 1e-14
Identities = 35/62 (56%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE++A++ L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[129][TOP]
>UniRef100_Q4DLU2 DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DLU2_TRYCR
Length = 77
Score = 82.8 bits (203), Expect = 1e-14
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE+ ALD L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[130][TOP]
>UniRef100_Q4CMX3 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
cruzi RepID=Q4CMX3_TRYCR
Length = 77
Score = 82.8 bits (203), Expect = 1e-14
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE+ ALD L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[131][TOP]
>UniRef100_Q1XEE4 DNA-directed RNA polymerase subunit 2RPB10 n=1 Tax=Trypanosoma
brucei brucei RepID=Q1XEE4_TRYBB
Length = 71
Score = 82.8 bits (203), Expect = 1e-14
Identities = 38/62 (61%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE+ ALD L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGSSEEAALDAFNLWRFCCRRMFLTHVDFSDLLL 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[132][TOP]
>UniRef100_C6LT42 DNA-directed RNA polymerase RPB10 n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LT42_GIALA
Length = 84
Score = 82.8 bits (203), Expect = 1e-14
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 9/71 (12%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE---------ALDGLGLSRYCCRRMLMT 382
MIIPVRCFTCGKV+G+ ++ YL LL +E + ALD LGL+RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVVGSLYEKYLKLLGEYEAEADGSLETPAKRALDELGLTRYCCRRMLLT 60
Query: 383 HVDLIEKLLNY 415
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLY 71
[133][TOP]
>UniRef100_A4H798 DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative n=1
Tax=Leishmania braziliensis RepID=A4H798_LEIBR
Length = 89
Score = 82.8 bits (203), Expect = 1e-14
Identities = 35/62 (56%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE++A++ L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[134][TOP]
>UniRef100_C8S9N0 RNA polymerase, N/8 Kd subunit n=1 Tax=Ferroglobus placidus DSM
10642 RepID=C8S9N0_FERPL
Length = 72
Score = 82.4 bits (202), Expect = 1e-14
Identities = 35/61 (57%), Positives = 43/61 (70%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+ PVRCFTCG VI +KW+ Y LL G S +EALD LG+ RYCCRRM TH ++E+L
Sbjct: 1 MFPVRCFTCGAVIAHKWEEYKRLLSEGKSPREALDSLGIERYCCRRMFFTHKSVVEELAR 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[135][TOP]
>UniRef100_Q980Z8 DNA-directed RNA polymerase subunit N n=2 Tax=Sulfolobus
solfataricus RepID=RPON_SULSO
Length = 66
Score = 82.4 bits (202), Expect = 1e-14
Identities = 31/62 (50%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IP+RCFTCG +I +KW +++ + AG + + LD LG+ RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[136][TOP]
>UniRef100_A4HVP0 DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative n=1
Tax=Leishmania infantum RepID=A4HVP0_LEIIN
Length = 89
Score = 81.6 bits (200), Expect = 2e-14
Identities = 35/62 (56%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG VI +K+ YLDL+ G SE++A++ L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNVFHLERFCCRRMMLTHVDMTDLLL 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[137][TOP]
>UniRef100_A2DSN4 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis G3
RepID=A2DSN4_TRIVA
Length = 73
Score = 81.6 bits (200), Expect = 2e-14
Identities = 35/63 (55%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQ-EALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRCFTCG +IG+KW Y+ L++ + EAL+ L L R+CCRRML+THVDL++++
Sbjct: 1 MLIPVRCFTCGAIIGHKWKEYVRLIEEEHMNYTEALNALNLKRFCCRRMLLTHVDLLDRM 60
Query: 407 LNY 415
L Y
Sbjct: 61 LLY 63
[138][TOP]
>UniRef100_C6A1B7 DNA-directed RNA polymerase subunit N n=1 Tax=Thermococcus
sibiricus MM 739 RepID=C6A1B7_THESM
Length = 68
Score = 81.6 bits (200), Expect = 2e-14
Identities = 32/62 (51%), Positives = 50/62 (80%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
+I+PVRCFTCGKVIG+K+ + + ++ G ++ LD LGL RYCCRRM ++HV+LI++++
Sbjct: 4 LIVPVRCFTCGKVIGDKYYIFKERVEKGEDPEKVLDDLGLERYCCRRMFLSHVELIDEIM 63
Query: 410 NY 415
+Y
Sbjct: 64 HY 65
[139][TOP]
>UniRef100_C3N058 DNA-directed RNA polymerase subunit N n=7 Tax=Sulfolobus
RepID=RPON_SULIA
Length = 66
Score = 80.9 bits (198), Expect = 4e-14
Identities = 30/62 (48%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IP+RCFTCG +I +KW ++ + AG + + LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[140][TOP]
>UniRef100_Q8TVB4 DNA-directed RNA polymerase subunit N n=1 Tax=Methanopyrus kandleri
RepID=RPON_METKA
Length = 72
Score = 80.9 bits (198), Expect = 4e-14
Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQA-GYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIP+RCFTCG+ I + W+ Y++L++ G EALD LG+ RYCCRRM ++HVDL+E+
Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEES 60
Query: 407 LNY 415
L Y
Sbjct: 61 LPY 63
[141][TOP]
>UniRef100_Q2L364 RNA polymerase I subunit 1RPB10 n=1 Tax=Trypanosoma brucei brucei
RepID=Q2L364_TRYBB
Length = 84
Score = 79.7 bits (195), Expect = 9e-14
Identities = 33/62 (53%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IPVRC++CGKV+G+ ++ Y +LL ++E EAL+ L LSR CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[142][TOP]
>UniRef100_C9ZJZ7 DNA-directed RNA polymerase subunit, putative n=2 Tax=Trypanosoma
brucei RepID=C9ZJZ7_TRYBG
Length = 84
Score = 79.7 bits (195), Expect = 9e-14
Identities = 33/62 (53%), Positives = 49/62 (79%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IPVRC++CGKV+G+ ++ Y +LL ++E EAL+ L LSR CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[143][TOP]
>UniRef100_A4YIM8 DNA-directed RNA polymerase subunit N n=1 Tax=Metallosphaera sedula
DSM 5348 RepID=RPON_METS5
Length = 66
Score = 79.3 bits (194), Expect = 1e-13
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG +I +KWD + ++AG + LD L + R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVV 60
Query: 410 NY 415
NY
Sbjct: 61 NY 62
[144][TOP]
>UniRef100_B7XIS4 DNA-directed RNA polymerases I, II, and III, subunit 10 n=1
Tax=Enterocytozoon bieneusi H348 RepID=B7XIS4_ENTBH
Length = 74
Score = 78.6 bits (192), Expect = 2e-13
Identities = 35/62 (56%), Positives = 47/62 (75%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCF+C K I +K++ YL+LL G S +ALD LGL+R CCRRM + HVD+ ++LL
Sbjct: 6 MIIPVRCFSCNKEISSKYEKYLELLSRGVSPADALDQLGLTRICCRRMYLGHVDIGDQLL 65
Query: 410 NY 415
+
Sbjct: 66 QF 67
[145][TOP]
>UniRef100_Q00ZB8 Chromosome 11 contig 1, DNA sequence n=1 Tax=Ostreococcus tauri
RepID=Q00ZB8_OSTTA
Length = 389
Score = 78.2 bits (191), Expect = 3e-13
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Frame = -1
Query: 415 VVEQLLNQVHVRHQHAPTAVPAQAKAVQRLLFAVACLEQVQVGVPLVPNHLPASEAPHWD 236
+ +QLL+++ V H H TAVP Q + VQ + AV L+++QVGVP VP+HLPA EAPH +
Sbjct: 216 IPQQLLDEIDVTHHHPSTAVPLQTQRVQGVALAVVRLQEIQVGVPFVPDHLPAREAPHGN 275
Query: 235 NHFLS--PWSRWTREAPRGRQERSPSRSALSLVPQLL 131
+H + PWS R P R R R+ ++ P +
Sbjct: 276 DHRSTPEPWST-ARAPPSIRARRRVRRARAAIRPNAM 311
[146][TOP]
>UniRef100_A1RWV6 DNA-directed RNA polymerase, subunit N n=1 Tax=Thermofilum pendens
Hrk 5 RepID=A1RWV6_THEPD
Length = 90
Score = 78.2 bits (191), Expect = 3e-13
Identities = 30/65 (46%), Positives = 46/65 (70%)
Frame = +2
Query: 221 R*KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIE 400
R +M+ P+RCFTCG +IG+KW+ Y + G + LD LG++RYCCRRM ++H + I+
Sbjct: 12 RTRMMFPIRCFTCGALIGDKWNEYSTRVANGEDPNKVLDDLGITRYCCRRMFLSHTEAID 71
Query: 401 KLLNY 415
K++ Y
Sbjct: 72 KIIKY 76
[147][TOP]
>UniRef100_P39472 DNA-directed RNA polymerase subunit N n=1 Tax=Sulfolobus
acidocaldarius RepID=RPON_SULAC
Length = 66
Score = 78.2 bits (191), Expect = 3e-13
Identities = 29/62 (46%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCG V+ +KW+ + + + G ++ L LG++RYCCRRML++HV++I +++
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 410 NY 415
+Y
Sbjct: 61 HY 62
[148][TOP]
>UniRef100_C4M5M4 DNA-directed RNA polymerase subunit N, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M5M4_ENTHI
Length = 73
Score = 77.8 bits (190), Expect = 3e-13
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
MIIPVRCFTCGKVIGNKW+ +L+L G + LG+ RYCC+RML++HV+LI L
Sbjct: 1 MIIPVRCFTCGKVIGNKWEKFLELATGGKVPMDQVFSELGIERYCCKRMLVSHVNLIGFL 60
Query: 407 LNY 415
Y
Sbjct: 61 SMY 63
[149][TOP]
>UniRef100_B6YSQ7 DNA-directed RNA polymerase subunit N n=1 Tax=Thermococcus
onnurineus NA1 RepID=RPON_THEON
Length = 65
Score = 77.4 bits (189), Expect = 5e-13
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCGKVIG+K+ + ++ G ++ LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[150][TOP]
>UniRef100_Q46CK8 DNA-directed RNA polymerase subunit N n=1 Tax=Methanosarcina
barkeri str. Fusaro RepID=RPON_METBF
Length = 62
Score = 77.4 bits (189), Expect = 5e-13
Identities = 33/61 (54%), Positives = 44/61 (72%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCF+CGKVI N WD Y + G + LD LG++RYCCRRML++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[151][TOP]
>UniRef100_C5A245 DNA-directed RNA polymerase subunit N (RpoN) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A245_THEGJ
Length = 70
Score = 77.0 bits (188), Expect = 6e-13
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = +2
Query: 227 KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
KMI+PVRCFTCGKV+ +K+ + ++AG + LD LG+ RYCCRR L++HV+LI+++
Sbjct: 5 KMIVPVRCFTCGKVLADKYYEFRKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQV 64
Query: 407 LNY 415
+ Y
Sbjct: 65 MVY 67
[152][TOP]
>UniRef100_A2SSV3 DNA-directed RNA polymerase subunit N n=1 Tax=Methanocorpusculum
labreanum Z RepID=RPON_METLZ
Length = 62
Score = 77.0 bits (188), Expect = 6e-13
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKVI W+ Y AG +E LD LGL RYCCRRML++H + +++L
Sbjct: 1 MIPVRCFTCGKVISTVWEEYQQRKAAGEDPKEILDSLGLDRYCCRRMLLSHKETVDELYP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[153][TOP]
>UniRef100_A9A430 RNA polymerase, N/8 Kd subunit n=1 Tax=Nitrosopumilus maritimus
SCM1 RepID=A9A430_NITMS
Length = 90
Score = 76.6 bits (187), Expect = 8e-13
Identities = 30/63 (47%), Positives = 49/63 (77%)
Frame = +2
Query: 227 KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
+M+IPVRCFTCG +I +K+D Y + ++AG ++ L+ LG+ RYCCRRML+T V+ I+++
Sbjct: 12 RMLIPVRCFTCGNLIADKYDDYQNKIKAGEDPEKTLESLGIERYCCRRMLLTTVETIQQV 71
Query: 407 LNY 415
+ +
Sbjct: 72 IPF 74
[154][TOP]
>UniRef100_Q8PW43 DNA-directed RNA polymerase subunit N n=1 Tax=Methanosarcina mazei
RepID=RPON_METMA
Length = 62
Score = 75.5 bits (184), Expect = 2e-12
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCF+CGKVI N WD Y + G LD LG++RYCCRRM ++HV+LI+ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[155][TOP]
>UniRef100_Q8TT41 DNA-directed RNA polymerase subunit N n=1 Tax=Methanosarcina
acetivorans RepID=RPON_METAC
Length = 62
Score = 75.5 bits (184), Expect = 2e-12
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCF+CGKVI N WD Y + G LD LG++RYCCRRM ++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[156][TOP]
>UniRef100_C7NMY3 RNA polymerase, N/8 Kd subunit n=1 Tax=Halorhabdus utahensis DSM
12940 RepID=C7NMY3_HALUD
Length = 64
Score = 75.1 bits (183), Expect = 2e-12
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEA-LDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRCFTCG VIGN+W+ + + + G + EA LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGNEWEEFKERAREGEEDPEAVLDELGVDRHCCRRMLVSHEDLVDVV 60
Query: 407 LNY 415
Y
Sbjct: 61 SPY 63
[157][TOP]
>UniRef100_Q5JJC9 DNA-directed RNA polymerase subunit N n=2 Tax=Thermococcus
RepID=RPON_PYRKO
Length = 65
Score = 75.1 bits (183), Expect = 2e-12
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCGKV+ +K+ + ++AG + LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[158][TOP]
>UniRef100_A7IAH1 DNA-directed RNA polymerase subunit N n=1 Tax=Candidatus
Methanoregula boonei 6A8 RepID=RPON_METB6
Length = 62
Score = 75.1 bits (183), Expect = 2e-12
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKVI W+ Y + G ++ LD LG++RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[159][TOP]
>UniRef100_C6T1S6 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T1S6_SOYBN
Length = 111
Score = 74.7 bits (182), Expect = 3e-12
Identities = 33/76 (43%), Positives = 50/76 (65%)
Frame = -1
Query: 415 VVEQLLNQVHVRHQHAPTAVPAQAKAVQRLLFAVACLEQVQVGVPLVPNHLPASEAPHWD 236
V+EQLLN+++V H+HAPT +P Q++ +Q + F V CLE+VQ+G+P V N+L + + D
Sbjct: 34 VIEQLLNEINVGHKHAPTTIPNQSQCIQCISFTVICLEKVQIGIPFVSNYLSTGKTTNGD 93
Query: 235 NHFLSPWSRWTREAPR 188
+H L S PR
Sbjct: 94 DHLLPLLSSVLTTKPR 109
[160][TOP]
>UniRef100_Q2QWW6 Expressed protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QWW6_ORYSJ
Length = 202
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/93 (47%), Positives = 46/93 (49%), Gaps = 42/93 (45%)
Frame = +2
Query: 263 KVIGNKWDTYLDLLQAGYSEQ--------------------------------------- 325
KVIGNKWD YLDLLQA Y+E
Sbjct: 93 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGRRLADGDADLSV 152
Query: 326 ---EALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
+ALD LGL RYCCRRMLMTHVDLIEKLLNY
Sbjct: 153 HMWDALDALGLVRYCCRRMLMTHVDLIEKLLNY 185
[161][TOP]
>UniRef100_B9GC63 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9GC63_ORYSJ
Length = 144
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/93 (47%), Positives = 46/93 (49%), Gaps = 42/93 (45%)
Frame = +2
Query: 263 KVIGNKWDTYLDLLQAGYSEQ--------------------------------------- 325
KVIGNKWD YLDLLQA Y+E
Sbjct: 35 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGRRLADGDADLSV 94
Query: 326 ---EALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
+ALD LGL RYCCRRMLMTHVDLIEKLLNY
Sbjct: 95 HMWDALDALGLVRYCCRRMLMTHVDLIEKLLNY 127
[162][TOP]
>UniRef100_A3CWI3 DNA-directed RNA polymerase subunit N n=1 Tax=Methanoculleus
marisnigri JR1 RepID=RPON_METMJ
Length = 62
Score = 74.3 bits (181), Expect = 4e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKV+ W + + AG + LD LGL RYCCRRML+TH + +E L
Sbjct: 1 MIPVRCFTCGKVVSTAWKEFKERRDAGEDPKRILDDLGLERYCCRRMLLTHKETVEDLNP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[163][TOP]
>UniRef100_Q2Q0G7 DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism
HF70_19B12 RepID=Q2Q0G7_9ZZZZ
Length = 68
Score = 73.9 bits (180), Expect = 5e-12
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRC++CGKV+ + + Y++ AG QE LD L LSRYCCRRM + H+DLI+ +
Sbjct: 1 MLIPVRCWSCGKVVAHLYKKYVERTAAGEDPQEVLDDLALSRYCCRRMFVGHIDLIDDI 59
[164][TOP]
>UniRef100_C4VBT4 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4VBT4_NOSCE
Length = 74
Score = 73.6 bits (179), Expect = 7e-12
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+IPVRCFTC K I +KW+ Y L+ S +AL+ L + R CCRRM + HV++I+KL+
Sbjct: 1 MLIPVRCFTCNKEISSKWEPYKYLINTDKSPADALNELDIKRICCRRMFLGHVEIIDKLI 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[165][TOP]
>UniRef100_B8GEG1 DNA-directed RNA polymerase subunit N n=1 Tax=Methanosphaerula
palustris E1-9c RepID=RPON_METPE
Length = 62
Score = 73.6 bits (179), Expect = 7e-12
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKVI W+ + AG LD LGL++YCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAWEEFKQRRDAGEDPGAILDDLGLTQYCCRRMLLTHKEIIDELNP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[166][TOP]
>UniRef100_B3T888 Putative RNA polymerases N / 8 kDa subunit n=1 Tax=uncultured
marine crenarchaeote HF4000_APKG5C13 RepID=B3T888_9ARCH
Length = 78
Score = 73.2 bits (178), Expect = 9e-12
Identities = 29/62 (46%), Positives = 47/62 (75%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+PVRCFTCG ++ +K++ Y + +++G + LD LG+ RYCCRRML+T V+ I+++L
Sbjct: 1 MIVPVRCFTCGNLVADKFEEYQNRVKSGEEPAKILDSLGIDRYCCRRMLLTTVETIQQVL 60
Query: 410 NY 415
+
Sbjct: 61 PF 62
[167][TOP]
>UniRef100_B3T069 Putative RNA polymerases N / 8 kDa subunit n=1 Tax=uncultured
marine microorganism HF4000_001N02 RepID=B3T069_9ZZZZ
Length = 68
Score = 72.8 bits (177), Expect = 1e-11
Identities = 29/59 (49%), Positives = 44/59 (74%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRC++CGKV+ + ++ Y + AG ++ LD LGL RYCCRRM + H+DLI+++
Sbjct: 1 MLIPVRCWSCGKVVAHLYEQYKTAVDAGEDAEKVLDDLGLERYCCRRMYVGHIDLIDEI 59
[168][TOP]
>UniRef100_A3DMR0 DNA-directed RNA polymerase subunit N n=1 Tax=Staphylothermus
marinus F1 RepID=RPON_STAMF
Length = 66
Score = 72.8 bits (177), Expect = 1e-11
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+ PVRCFTCG IG+ W+ + ++AG + LD LG+ RYCCRRM ++H+++ ++L
Sbjct: 1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIEISYEIL 60
Query: 410 NY 415
N+
Sbjct: 61 NF 62
[169][TOP]
>UniRef100_O29135 DNA-directed RNA polymerase subunit N n=1 Tax=Archaeoglobus
fulgidus RepID=RPON_ARCFU
Length = 76
Score = 72.8 bits (177), Expect = 1e-11
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = +2
Query: 239 PVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
P+RCF+CG VIG+ +D Y L G S +EALD LG+ RYCCRRM +TH +I++L +
Sbjct: 13 PIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRF 71
[170][TOP]
>UniRef100_B8BNG7 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BNG7_ORYSI
Length = 223
Score = 72.0 bits (175), Expect = 2e-11
Identities = 43/85 (50%), Positives = 48/85 (56%), Gaps = 22/85 (25%)
Frame = +2
Query: 227 KMIIPVRCFTCGK----------VIGNKWDTYLDLLQAGYSEQ------------EALDG 340
+MIIPVRCFTCGK +G+ LL G + +ALD
Sbjct: 129 EMIIPVRCFTCGKWQWKTARGGEALGSNGRDRDGLLWGGGRQLADGDADLSMRTWDALDA 188
Query: 341 LGLSRYCCRRMLMTHVDLIEKLLNY 415
LGL RYCCRRMLMTHVDLIEKLLNY
Sbjct: 189 LGLVRYCCRRMLMTHVDLIEKLLNY 213
[171][TOP]
>UniRef100_B8D6F4 DNA-directed RNA polymerase subunit N n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F4_DESK1
Length = 76
Score = 72.0 bits (175), Expect = 2e-11
Identities = 27/62 (43%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
++ PVRCFTCGK IG+ W+ Y+ ++ G + + LD LG+ RYCCRRM +++ D+ +++L
Sbjct: 11 LLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFLSYTDISKEIL 70
Query: 410 NY 415
+
Sbjct: 71 YF 72
[172][TOP]
>UniRef100_B3T4Z6 Putative RNA polymerases N / 8 kDa subunit n=1 Tax=uncultured
marine crenarchaeote HF4000_ANIW137N18
RepID=B3T4Z6_9ARCH
Length = 78
Score = 72.0 bits (175), Expect = 2e-11
Identities = 27/62 (43%), Positives = 47/62 (75%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M++PVRCFTCG ++ +K++ Y + +++G + LD LG+ RYCCRRM++T V+ I+++L
Sbjct: 1 MLVPVRCFTCGNLVADKFEEYQNRVKSGEEPAKILDSLGIDRYCCRRMMLTTVETIQQIL 60
Query: 410 NY 415
+
Sbjct: 61 PF 62
[173][TOP]
>UniRef100_A0RY12 DNA-directed RNA polymerase, subunit N n=1 Tax=Cenarchaeum
symbiosum RepID=A0RY12_CENSY
Length = 78
Score = 71.6 bits (174), Expect = 2e-11
Identities = 27/62 (43%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M++PVRCFTCG ++ +K+ Y ++AG + + LD LG+ RYCCRRML T ++ I++++
Sbjct: 1 MLVPVRCFTCGNLVADKFGEYKSRVEAGEAPGKVLDSLGMERYCCRRMLFTSIETIQQII 60
Query: 410 NY 415
+
Sbjct: 61 PF 62
[174][TOP]
>UniRef100_B1L5N0 DNA-directed RNA polymerase, subunit N n=1 Tax=Candidatus
Korarchaeum cryptofilum OPF8 RepID=B1L5N0_KORCO
Length = 67
Score = 71.2 bits (173), Expect = 3e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+ P+RCFTCG VIG+KW+ + + AG E LD + + RYCCRRM ++H++L + L+
Sbjct: 1 MFPIRCFTCGSVIGDKWEEFSRRVMAGEDPGEVLDSMNIKRYCCRRMFLSHIELSDLELS 60
Query: 413 Y 415
+
Sbjct: 61 F 61
[175][TOP]
>UniRef100_C7DIN4 RNA polymerase, N/8 Kd subunit n=1 Tax=Candidatus Micrarchaeum
acidiphilum ARMAN-2 RepID=C7DIN4_9EURY
Length = 69
Score = 71.2 bits (173), Expect = 3e-11
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +2
Query: 227 KMIIPVRCFTCGKVIGNKWDTYLDLLQA-GYSEQEALDGLGLSRYCCRRMLMTHVDLIEK 403
KM++PVRCFTCG V+ +KW+ Y + + G + LD LG RYCCRRM +++V+LI++
Sbjct: 3 KMMMPVRCFTCGAVVADKWEEYNNRVNKNGEDASKVLDELGFKRYCCRRMFISNVELIDE 62
Query: 404 LLN 412
+N
Sbjct: 63 FIN 65
[176][TOP]
>UniRef100_B9ZE21 RNA polymerase, N/8 Kd subunit n=1 Tax=Natrialba magadii ATCC 43099
RepID=B9ZE21_NATMA
Length = 64
Score = 70.9 bits (172), Expect = 4e-11
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE-ALDGLGLSRYCCRRMLMTHVDLIEKL 406
M++PVRCFTCG V+G W+ + + G + E LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 407 LNY 415
Y
Sbjct: 61 SPY 63
[177][TOP]
>UniRef100_A4WNA8 DNA-directed RNA polymerase subunit N n=1 Tax=Pyrobaculum
arsenaticum DSM 13514 RepID=RPON_PYRAR
Length = 65
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/62 (53%), Positives = 42/62 (67%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK +G+ + + + AG + LD LGL RYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVL 60
Query: 410 NY 415
Y
Sbjct: 61 IY 62
[178][TOP]
>UniRef100_Q18G60 DNA-directed RNA polymerase subunit N n=1 Tax=Haloquadratum walsbyi
DSM 16790 RepID=RPON_HALWD
Length = 64
Score = 70.9 bits (172), Expect = 4e-11
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQ-EALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRCFTCG VIG WD + + G + E LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKQRARDGNEDPGEVLDDLGIKRHCCRRMMVSHRDLVDVV 60
Query: 407 LNY 415
Y
Sbjct: 61 APY 63
[179][TOP]
>UniRef100_A8M9S4 DNA-directed RNA polymerase subunit N n=1 Tax=Caldivirga
maquilingensis IC-167 RepID=RPON_CALMQ
Length = 67
Score = 70.9 bits (172), Expect = 4e-11
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+P+RC+TCG+ +G+ W+ + + + AG + LD L ++RYCCRR L+ HV+LI ++L
Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFRNRVLAGEDPGKVLDDLHVTRYCCRRTLLAHVELINQVL 60
Query: 410 NY 415
Y
Sbjct: 61 PY 62
[180][TOP]
>UniRef100_Q9YB47 DNA-directed RNA polymerase subunit N n=1 Tax=Aeropyrum pernix
RepID=RPON_AERPE
Length = 77
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
M+ PVRCFTCG+ +G+ W + +L+ +G + EALD LG+ RYCCRR L T V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 410 NY 415
Y
Sbjct: 61 KY 62
[181][TOP]
>UniRef100_UPI0000D9ABE2 PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) n=1 Tax=Macaca
mulatta RepID=UPI0000D9ABE2
Length = 107
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = +2
Query: 242 VRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
VRCFTC K +GN W+ YL LLQA Y++++AL L +CC ML+ HVDLI+KLLNY
Sbjct: 48 VRCFTCSKTVGNTWEAYLGLLQAKYTDRDAL-RLKHYSHCC--MLLAHVDLIQKLLNY 102
[182][TOP]
>UniRef100_A0B6E7 DNA-directed RNA polymerase subunit N n=1 Tax=Methanosaeta
thermophila PT RepID=RPON_METTP
Length = 61
Score = 70.1 bits (170), Expect = 7e-11
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCF+CGKVI + W+ Y + +++ + +D LG+ RYCCRRML++HV+++E L
Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRR 59
Query: 413 Y 415
Y
Sbjct: 60 Y 60
[183][TOP]
>UniRef100_A3MXZ9 DNA-directed RNA polymerase subunit N n=1 Tax=Pyrobaculum
calidifontis JCM 11548 RepID=RPON_PYRCJ
Length = 66
Score = 69.7 bits (169), Expect = 9e-11
Identities = 33/62 (53%), Positives = 41/62 (66%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCGK +G+ + + + AG LD LG+ RYCCRR LM HV+ I+ LL
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKKRVLAGEHPGRVLDELGVVRYCCRRTLMAHVEWIDDLL 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[184][TOP]
>UniRef100_B1YC34 DNA-directed RNA polymerase subunit N n=1 Tax=Thermoproteus
neutrophilus V24Sta RepID=RPON_THENV
Length = 66
Score = 69.3 bits (168), Expect = 1e-10
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIPVRCFTCG+ +G+ + + + AG E LD LG+ RYCCRR L++HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVL 60
Query: 410 NY 415
Y
Sbjct: 61 AY 62
[185][TOP]
>UniRef100_A1RSD9 DNA-directed RNA polymerase subunit N n=1 Tax=Pyrobaculum
islandicum DSM 4184 RepID=RPON_PYRIL
Length = 66
Score = 69.3 bits (168), Expect = 1e-10
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MI+P+RCFTCGK +G+ + T+ + AG LD LG+ RYCCRR L+ HV+ I+ LL
Sbjct: 1 MIVPIRCFTCGKPLGHLYITFKHRVLAGEHPGRVLDELGVHRYCCRRTLIAHVEWIDDLL 60
Query: 410 NY 415
Y
Sbjct: 61 VY 62
[186][TOP]
>UniRef100_Q8ZYP9 DNA-directed RNA polymerase subunit N n=1 Tax=Pyrobaculum
aerophilum RepID=RPON_PYRAE
Length = 66
Score = 69.3 bits (168), Expect = 1e-10
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCGK +G+ + + + AG LD LG++RYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPIRCFTCGKPLGHLYAVFKRRVLAGEHPGRVLDDLGVTRYCCRRTLMAHVEWIDDVL 60
Query: 410 NY 415
Y
Sbjct: 61 LY 62
[187][TOP]
>UniRef100_Q2FTN7 DNA-directed RNA polymerase subunit N n=1 Tax=Methanospirillum
hungatei JF-1 RepID=RPON_METHJ
Length = 62
Score = 68.9 bits (167), Expect = 2e-10
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKVI ++ + A + LD LG+ RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAYEEFKRRRDASEDPKRILDDLGMDRYCCRRMLLTHKEIIDELNP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[188][TOP]
>UniRef100_UPI00003C8433 DNA-directed RNA polymerase subunit N n=1 Tax=Ferroplasma
acidarmanus fer1 RepID=UPI00003C8433
Length = 73
Score = 68.2 bits (165), Expect = 3e-10
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 10/72 (13%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ----------AGYSEQEALDGLGLSRYCCRRMLM 379
MIIPVRCF+CGKVIG+ + +++ + G + E LD LG+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGKVIGSDYVRFVEESKKIRKDTGHDPTGKEKSEILDNLGVDRYCCRRMIL 60
Query: 380 THVDLIEKLLNY 415
++ DL++++++Y
Sbjct: 61 SNADLLDEVISY 72
[189][TOP]
>UniRef100_C1V6C4 DNA-directed RNA polymerase, subunit N n=1 Tax=Halogeometricum
borinquense DSM 11551 RepID=C1V6C4_9EURY
Length = 64
Score = 67.8 bits (164), Expect = 4e-10
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAG-YSEQEALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRCFTCG V+G WD + + G + + LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWDEFKARAREGDENPAKVLDELGVERHCCRRMMVSHKDLVDVV 60
Query: 407 LNY 415
Y
Sbjct: 61 APY 63
[190][TOP]
>UniRef100_Q12TI4 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=RPON_METBU
Length = 62
Score = 67.4 bits (163), Expect = 5e-10
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
+IPVRCFTCGKVI W+ Y G LD L RYCCRRM + HV+L++ +
Sbjct: 1 MIPVRCFTCGKVIAGSWEEYKRRTGEGEDPATVLDDLKFVRYCCRRMFLAHVELVDTMAP 60
Query: 413 Y 415
Y
Sbjct: 61 Y 61
[191][TOP]
>UniRef100_B9LPW4 DNA-directed RNA polymerase subunit N n=1 Tax=Halorubrum
lacusprofundi ATCC 49239 RepID=RPON_HALLT
Length = 64
Score = 67.4 bits (163), Expect = 5e-10
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQ-EALDGLGLSRYCCRRMLMTHVDLIEKL 406
M+IPVRCFTCG V+G W+ + + + G + + LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGKVLDELGVDRHCCRRMMVSHRDLVDVV 60
Query: 407 LNY 415
Y
Sbjct: 61 SPY 63
[192][TOP]
>UniRef100_Q0W8C7 DNA-directed RNA polymerase subunit N n=1 Tax=uncultured
methanogenic archaeon RC-I RepID=RPON_UNCMA
Length = 71
Score = 66.6 bits (161), Expect = 8e-10
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYL-------------DLLQAGYSEQEALDGLGLSRYCCRRM 373
+IPVRCFTCGKVI W+ Y ++L+ G + LD LG+ RYCCRRM
Sbjct: 1 MIPVRCFTCGKVISEVWEEYKARVEERKMNLQHGEVLKVG----DILDDLGVERYCCRRM 56
Query: 374 LMTHVDLIEKLLNY 415
L++HV+L++ L Y
Sbjct: 57 LLSHVELVDVLAPY 70
[193][TOP]
>UniRef100_Q979K0 DNA-directed RNA polymerase subunit N n=1 Tax=Thermoplasma
volcanium RepID=RPON_THEVO
Length = 72
Score = 66.2 bits (160), Expect = 1e-09
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSE---------QEALDGLGLSRYCCRRMLMT 382
MIIPVRCF+CG+VI + + YL + SE ++ D LG+ RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYLRRINEIRSEGREPTAEEIEKIFDDLGVERYCCRRMIIS 60
Query: 383 HVDLIEKLLNY 415
HVDLI +++ +
Sbjct: 61 HVDLINEIMPF 71
[194][TOP]
>UniRef100_Q3IQT2 DNA-directed RNA polymerase subunit N n=1 Tax=Natronomonas
pharaonis DSM 2160 RepID=RPON_NATPD
Length = 64
Score = 66.2 bits (160), Expect = 1e-09
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQ-EALDGLGLSRYCCRRMLMTHVDLIEKL 406
M++PVRCFTCG V+G W + + + G + E LD LG+ R CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWGEFKERAREGDEDPAEVLDELGVERACCRRMLVSHKDLVDIV 60
Query: 407 LNY 415
Y
Sbjct: 61 SPY 63
[195][TOP]
>UniRef100_A5UN59 DNA-directed RNA polymerase, subunit N, RpoN n=2
Tax=Methanobrevibacter smithii RepID=A5UN59_METS3
Length = 56
Score = 65.1 bits (157), Expect = 2e-09
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIE 400
+IP+RC +CGK + +D Y L AG ++ LD LGL+RYCCRRML++HV+ E
Sbjct: 1 MIPIRCLSCGKPVSAYFDEYNKRLAAGEKSKDILDDLGLNRYCCRRMLISHVETWE 56
[196][TOP]
>UniRef100_Q9HL09 DNA-directed RNA polymerase subunit N n=1 Tax=Thermoplasma
acidophilum RepID=RPON_THEAC
Length = 72
Score = 64.7 bits (156), Expect = 3e-09
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSE---------QEALDGLGLSRYCCRRMLMT 382
MIIPVRCF+CG+VI + + Y+ + +E ++ D LG+ RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKRVNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVS 60
Query: 383 HVDLIEKLLNY 415
HVDLI +++ +
Sbjct: 61 HVDLISEIMPF 71
[197][TOP]
>UniRef100_A2BK83 DNA-directed RNA polymerase subunit N n=1 Tax=Hyperthermus
butylicus DSM 5456 RepID=RPON_HYPBU
Length = 66
Score = 64.7 bits (156), Expect = 3e-09
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 409
MIIP+RCFTCG+ + W+ + ++ G ++ LD LG+ RYCCR+ L+ HV I ++
Sbjct: 1 MIIPMRCFTCGRPLAQYWEEFRSRVEGGEDPRKVLDELGVKRYCCRKTLLAHVPAIYEVR 60
Query: 410 NY 415
+
Sbjct: 61 KF 62
[198][TOP]
>UniRef100_Q6L292 DNA-directed RNA polymerase subunit N n=1 Tax=Picrophilus torridus
RepID=RPON_PICTO
Length = 72
Score = 63.9 bits (154), Expect = 5e-09
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQA----------GYSEQEALDGLGLSRYCCRRMLM 379
MIIPVRCF+CG+VI + + + + G + + LD LG+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYVRFTEACTKIINETGREPRGEEKAKILDDLGVKRYCCRRMIL 60
Query: 380 THVDLIEKLLNY 415
+H DLI+++L Y
Sbjct: 61 SHKDLIDEVLPY 72
[199][TOP]
>UniRef100_P29199 DNA-directed RNA polymerase subunit N n=1 Tax=Haloarcula
marismortui RepID=RPON_HALMA
Length = 66
Score = 63.9 bits (154), Expect = 5e-09
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE---ALDGLGLSRYCCRRMLMTHVDLIE 400
M++PVRCFTCG V+G W+ + + ++ LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 401 KLLNY 415
+ Y
Sbjct: 61 IVSPY 65
[200][TOP]
>UniRef100_Q2NG00 RpoN n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NG00_METST
Length = 55
Score = 63.5 bits (153), Expect = 7e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +2
Query: 242 VRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDL 394
VRCFTCGKVI +D + +AG + + LD LG+++YCCRRM ++HVD+
Sbjct: 4 VRCFTCGKVISASFDEFEKRTKAGENPNDVLDDLGITKYCCRRMFISHVDV 54
[201][TOP]
>UniRef100_B0R4Y6 DNA-directed RNA polymerase subunit N n=2 Tax=Halobacterium
salinarum RepID=RPON_HALS3
Length = 66
Score = 63.5 bits (153), Expect = 7e-09
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE---ALDGLGLSRYCCRRMLMTHVDLIE 400
M++PVRCF+CG V+G W+ + + +++ LD LG+ R+CCRRML+ H DL++
Sbjct: 1 MMVPVRCFSCGTVVGEHWEAFKARAETHDGDEDPADVLDDLGVDRHCCRRMLIAHQDLVD 60
Query: 401 KLLNY 415
+ Y
Sbjct: 61 VVSPY 65
[202][TOP]
>UniRef100_C7NZ13 RNA polymerase, N/8 Kd subunit n=1 Tax=Halomicrobium mukohataei DSM
12286 RepID=C7NZ13_HALMD
Length = 66
Score = 62.0 bits (149), Expect = 2e-08
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQE---ALDGLGLSRYCCRRMLMTHVDLIE 400
M++PVRCFTCG V+ W+ + + ++ LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 401 KLLNY 415
+ Y
Sbjct: 61 IVAPY 65
[203][TOP]
>UniRef100_Q74MB5 DNA-directed RNA polymerase subunit N n=1 Tax=Nanoarchaeum equitans
RepID=RPON_NANEQ
Length = 65
Score = 61.6 bits (148), Expect = 3e-08
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHV 388
M+ P+RCF+CGK +G+ W+ + + + G ++ LD LGL RYCCRR L++ V
Sbjct: 1 MLPPIRCFSCGKPLGHLWEEFNERVNKGEDPKKVLDDLGLERYCCRRTLLSAV 53
[204][TOP]
>UniRef100_UPI00005A37B8 PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) n=1 Tax=Canis
lupus familiaris RepID=UPI00005A37B8
Length = 154
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/85 (47%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 164 RGRAFLAASRGLAGPAAPGR*KMIIPVRCFTCGKVIGNKWDTYLDLLQAGYSE-QEALDG 340
RG FLA G PG +PV G N L G E ++ALD
Sbjct: 72 RGPGFLATEP--CGAGRPGAALPSLPVSTGLAGVCTFNP-----GLRSGGSGEARDALDA 124
Query: 341 LGLSRYCCRRMLMTHVDLIEKLLNY 415
LGL RYCCRRML+ HVDLIEKLLNY
Sbjct: 125 LGLKRYCCRRMLLAHVDLIEKLLNY 149
[205][TOP]
>UniRef100_A8A8W9 DNA-directed RNA polymerase, subunit N n=1 Tax=Ignicoccus
hospitalis KIN4/I RepID=A8A8W9_IGNH4
Length = 68
Score = 60.8 bits (146), Expect = 4e-08
Identities = 21/61 (34%), Positives = 44/61 (72%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLN 412
++P+RC+TCG+ + +++ +L ++AG + LD LG+ RYCCRR +++ VD+ ++++
Sbjct: 1 MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIK 60
Query: 413 Y 415
+
Sbjct: 61 F 61
[206][TOP]
>UniRef100_UPI0000D9FC1D PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5), partial n=1
Tax=Macaca mulatta RepID=UPI0000D9FC1D
Length = 53
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 263 KVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
K +GN W+ YL LLQA Y++++AL GL S CC ML+ HVDLI+KLLNY
Sbjct: 1 KTVGNTWEAYLGLLQAKYTDRDAL-GLKHSSCCC--MLLAHVDLIQKLLNY 48
[207][TOP]
>UniRef100_A6UPX1 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcus
vannielii SB RepID=RPON_METVS
Length = 68
Score = 59.3 bits (142), Expect = 1e-07
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
MI P+RCF+CG VI +D Y L S +E L+ LG+++YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYDEYKTRLSNVESPEEILNDLGVTKYCCRRMFASH 52
[208][TOP]
>UniRef100_O26147 DNA-directed RNA polymerase subunit N n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPON_METTH
Length = 55
Score = 59.3 bits (142), Expect = 1e-07
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVD 391
+IPVRC +CGK + ++ Y + G ++ LD LGL RYCCRRML++HV+
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
[209][TOP]
>UniRef100_A6UVZ9 RNA polymerase, N/8 Kd subunits n=1 Tax=Methanococcus aeolicus
Nankai-3 RepID=A6UVZ9_META3
Length = 69
Score = 58.2 bits (139), Expect = 3e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
++ P+RCF+CG VI + Y+ L+ G ALD LG+ +YCCRRM ++H
Sbjct: 2 VMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISH 53
[210][TOP]
>UniRef100_A8TGV0 RNA polymerase, N/8 Kd subunit n=1 Tax=Methanococcus voltae A3
RepID=A8TGV0_METVO
Length = 68
Score = 57.8 bits (138), Expect = 4e-07
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH-----VDL 394
M+ PVRCF+CG V+ + Y + L G E LD L +++YCCRRM +H DL
Sbjct: 1 MMFPVRCFSCGTVVSEVYGEYHERLTNGEKSDEILDDLDITKYCCRRMFASHRLHNDKDL 60
Query: 395 IEKLLNY 415
+ ++ Y
Sbjct: 61 FDDVMEY 67
[211][TOP]
>UniRef100_Q57649 DNA-directed RNA polymerase subunit N n=1 Tax=Methanocaldococcus
jannaschii RepID=RPON_METJA
Length = 73
Score = 57.8 bits (138), Expect = 4e-07
Identities = 21/52 (40%), Positives = 36/52 (69%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
M+ P+RCF+CG VI ++ Y + + G + ++ LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISY 52
[212][TOP]
>UniRef100_Q6LXM4 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcus
maripaludis RepID=RPON_METMP
Length = 68
Score = 57.4 bits (137), Expect = 5e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
MI P+RCF+CG VI ++ Y L+ G + +E L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASH 52
[213][TOP]
>UniRef100_A9A9Y7 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcus
maripaludis C6 RepID=RPON_METM6
Length = 68
Score = 57.4 bits (137), Expect = 5e-07
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
MI P+RCF+CG VI ++ Y + L+ G + +E L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRNRLKDGENPEEILNDLEVKKYCCRRMFASH 52
[214][TOP]
>UniRef100_UPI000186F134 transcription initiation factor supt3, putative n=1 Tax=Pediculus
humanus corporis RepID=UPI000186F134
Length = 317
Score = 57.0 bits (136), Expect = 6e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 326 EALDGLGLSRYCCRRMLMTHVDLIEKLLNY 415
+ALD LGL RYCCRRML+ HVDLIEKLLNY
Sbjct: 283 DALDALGLKRYCCRRMLLGHVDLIEKLLNY 312
[215][TOP]
>UniRef100_B5IBF8 RNA polymerases N / 8 kDa subunit superfamily n=1
Tax=Aciduliprofundum boonei T469 RepID=B5IBF8_9EURY
Length = 73
Score = 57.0 bits (136), Expect = 6e-07
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQ----------AGYSEQEALDGLGLSRYCCRRMLM 379
MIIPVRCF+CG+VI + + +++ + Q D +G+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYIAFVNKVNLIRETENREPTPEEIQRIFDEIGVKRYCCRRMIL 60
Query: 380 THVDLIEKLLNY 415
+HV+LI+ + +
Sbjct: 61 SHVNLIDDTMAF 72
[216][TOP]
>UniRef100_C9RDV4 RNA polymerase, N/8 Kd subunit n=1 Tax=Methanocaldococcus vulcanius
M7 RepID=C9RDV4_9EURY
Length = 73
Score = 56.6 bits (135), Expect = 8e-07
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
M+ P+RCF+CG VI ++ Y + + G ++ LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERVLKGEDPKKVLDDLGIKKYCCRRMFVSY 52
[217][TOP]
>UniRef100_A6VGR3 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcus
maripaludis C7 RepID=RPON_METM7
Length = 68
Score = 56.6 bits (135), Expect = 8e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
MI P+RCF+CG VI ++ Y L+ G + +E L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRTRLKDGENPEEILNDLEVKKYCCRRMFASH 52
[218][TOP]
>UniRef100_A4FWK8 DNA-directed RNA polymerase subunit N n=1 Tax=Methanococcus
maripaludis C5 RepID=RPON_METM5
Length = 68
Score = 56.6 bits (135), Expect = 8e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
MI P+RCF+CG VI ++ Y L+ G + +E L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRTRLKNGENPEEILNDLEVKKYCCRRMFASH 52
[219][TOP]
>UniRef100_C7P6X6 RNA polymerase, N/8 Kd subunit n=1 Tax=Methanocaldococcus fervens
AG86 RepID=C7P6X6_METFA
Length = 72
Score = 55.5 bits (132), Expect = 2e-06
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +2
Query: 233 IIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
+ P+RCF+CG VI ++ Y + + G + ++ LD LG+ +YCCRRM +++
Sbjct: 1 MFPIRCFSCGNVIAEVFEEYKERVLKGENPKDVLDDLGIKKYCCRRMFISY 51
[220][TOP]
>UniRef100_C5U5T7 RNA polymerase, N/8 Kd subunit n=1 Tax=Methanocaldococcus infernus
ME RepID=C5U5T7_9EURY
Length = 73
Score = 55.5 bits (132), Expect = 2e-06
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 230 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTH 385
M+ P+RCF+CG VI ++ Y + + G + LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERVLKGEDPGKVLDDLGIKKYCCRRMFISY 52