[UP]
[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 319 bits (817), Expect = 1e-85
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +3
Query: 60 MALTLHQQRMAQIACRQQASGRVSVRPVLQLASTRVPVPYGPNMAVVATRPARSGLVVRA 239
MALTLHQQRMAQIACRQQASGRVSVRPVLQLASTRVPVPYGPNMAVVATRPARSGLVVRA
Sbjct: 1 MALTLHQQRMAQIACRQQASGRVSVRPVLQLASTRVPVPYGPNMAVVATRPARSGLVVRA 60
Query: 240 QSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGT 419
QSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGT
Sbjct: 61 QSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGT 120
Query: 420 HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK
Sbjct: 121 HGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 166
[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 200 bits (508), Expect = 7e-50
Identities = 117/173 (67%), Positives = 133/173 (76%), Gaps = 7/173 (4%)
Frame = +3
Query: 60 MALTLHQQRMAQIACRQQA---SGRVSVRPVLQLASTRVPVPY----GPNMAVVATRPAR 218
MAL L QQ++A C+++A G V RP + ASTR P + G V A RP+R
Sbjct: 1 MALLL-QQQVAHGLCKKRAVGPCGAVLHRPCVTPASTRPPSTFQSVEGLAPVVGAGRPSR 59
Query: 219 SGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSA 398
SG VV A A A TVRIIIQGRKLPVT+AIK YVEEKVAKA+ NF+HTLKEVDVTLSA
Sbjct: 60 SGFVVHA--AAKTASTVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSA 117
Query: 399 RGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
RGGDTGTHGKKEQKV+VTI+TLRNGVVRVED E+NLYAAIDLVCDKIR+KL +
Sbjct: 118 RGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTR 170
[3][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 102 bits (254), Expect = 2e-20
Identities = 57/111 (51%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Frame = +3
Query: 234 RAQSAKAAAGT---VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARG 404
R + A GT VR++IQG+ L +TDAIK YVEEKV AV N S +KEVDV +S RG
Sbjct: 74 RVTTCMAWGGTLAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRG 133
Query: 405 GDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
G+TG G++ Q+ EVT++T ++GVVR E+ ++YA+ID V D I KL+K
Sbjct: 134 GETG-RGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 183
[4][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 102 bits (254), Expect = 2e-20
Identities = 56/126 (44%), Positives = 86/126 (68%)
Frame = +3
Query: 180 GPNMAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANF 359
G N+AV + + +R+ V S +V++I+QGR L V+D ++ +VE+KV K+VA
Sbjct: 46 GLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKH 105
Query: 360 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 539
SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV I
Sbjct: 106 SHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSII 164
Query: 540 RAKLQK 557
+ KL+K
Sbjct: 165 QRKLRK 170
[5][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 102 bits (253), Expect = 3e-20
Identities = 55/101 (54%), Positives = 72/101 (71%)
Frame = +3
Query: 255 AAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKE 434
A VR++IQG+ L +TDAIK YVEEKV AV N S +KEVDV +S RGG+TG G K
Sbjct: 6 ALAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETG-RGGKL 64
Query: 435 QKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
Q+ EVT++T ++GVVR E+ ++YA+ID V D I KL+K
Sbjct: 65 QRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 105
[6][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 100 bits (249), Expect = 7e-20
Identities = 61/119 (51%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Frame = +3
Query: 207 RPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANF-SHTLKEVD 383
R A S VV S +A+A T ++I+QGR L +TD+I+ Y EEK+ KAVA+F H ++EVD
Sbjct: 63 RAAGSNRVV--VSVEASAST-KVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVD 119
Query: 384 VTLSARGG-DTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
V S+RGG D T G QK EVT+YT RNG++R E+ ++LYA+ID V DK+ KL+K
Sbjct: 120 VRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKLERKLRK 177
[7][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 97.8 bits (242), Expect = 5e-19
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 5/131 (3%)
Frame = +3
Query: 180 GPNMAVVAT-RPARSGLVVRAQSAKAA----AGTVRIIIQGRKLPVTDAIKLYVEEKVAK 344
G NM+ + R AR+ L S K + +V++IIQG+ L +TD +K +VE+KV K
Sbjct: 52 GKNMSFIELGRTARTPLTHGGCSVKMSWDGPLHSVKLIIQGKNLELTDTVKRHVEDKVGK 111
Query: 345 AVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDL 524
AV SH ++EVDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +YA+IDL
Sbjct: 112 AVQKHSHLVREVDVRLSVRGGELG-KGPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDL 170
Query: 525 VCDKIRAKLQK 557
V I+ KL+K
Sbjct: 171 VSSIIQRKLRK 181
[8][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 97.4 bits (241), Expect = 6e-19
Identities = 49/98 (50%), Positives = 71/98 (72%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+VR+IIQG+ +TDA+K Y+EEKV AV ++ ++EVDV LS RGG+ G G K ++
Sbjct: 87 SVRLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVREVDVRLSIRGGEVG-KGPKIRRC 145
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T ++GVVR E+ +YA+ID+V D IR KL+K
Sbjct: 146 EVTLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRK 183
[9][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/130 (40%), Positives = 80/130 (61%)
Frame = +3
Query: 168 PVPYGPNMAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKA 347
P+ G N+ + R V S + +V++I QG+ L +TD +K +VE+KV KA
Sbjct: 57 PLKLGSNVKYFENKRGRRSAV--RMSWEGPLSSVKLITQGKNLELTDTVKKHVEDKVGKA 114
Query: 348 VANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 527
V SH ++EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ +YA+IDLV
Sbjct: 115 VQKHSHLVREVDVRLSVRGGEFG-KGPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLV 173
Query: 528 CDKIRAKLQK 557
I+ KL+K
Sbjct: 174 SSIIQRKLRK 183
[10][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TFU4_SOYBN
Length = 208
Score = 95.9 bits (237), Expect = 2e-18
Identities = 48/98 (48%), Positives = 69/98 (70%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++IIQG+ L +TDA+K +VE+KV KAV SH ++EVDV LS RGG G + ++
Sbjct: 69 SVKLIIQGKNLELTDAVKRHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRC 128
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T R+GVVR E+ + Y +IDLV I+ KL+K
Sbjct: 129 EVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRK 166
[11][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 94.4 bits (233), Expect = 5e-18
Identities = 53/119 (44%), Positives = 76/119 (63%)
Frame = +3
Query: 201 ATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEV 380
AT L VR S +V++I+QG+ L +TD ++ +VEEKV KAV SH ++EV
Sbjct: 57 ATTRQTKPLAVR-MSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREV 115
Query: 381 DVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
DV LS RGG+ G G K ++ EVT++T ++GVVR E+ LY +ID+V I+ KL+K
Sbjct: 116 DVRLSIRGGELG-KGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRK 173
[12][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 94.0 bits (232), Expect = 7e-18
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++ IQG+ L +TDA+K +VE+KV KAV SH ++EVDV LS RGG G + ++
Sbjct: 69 SVKLTIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRC 128
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T R+GVVR E+ + Y +IDLV I+ KL+K
Sbjct: 129 EVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRK 166
[13][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 94.0 bits (232), Expect = 7e-18
Identities = 47/98 (47%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++I+QG+ L +TD ++ +VEEKV KAV SH ++EVDV LS RGG+ G G K ++
Sbjct: 9 SVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELG-KGPKIRRC 67
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T ++GVVR E+ LY +ID+V I+ KL+K
Sbjct: 68 EVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRK 105
[14][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 92.8 bits (229), Expect = 2e-17
Identities = 52/114 (45%), Positives = 76/114 (66%)
Frame = +3
Query: 216 RSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS 395
RS L V+ S +V++IIQG+ L +++ IK +VEEKV K+V SH ++EVDV LS
Sbjct: 123 RSSLAVK-MSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLS 181
Query: 396 ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
RGG+ G G + ++ EVT++T ++GVVR E+ +YA IDLV I+ KL+K
Sbjct: 182 VRGGEFG-KGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRK 234
[15][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/98 (46%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++I+QG+ L +T A+K YVEEK+ KAV SH +EVDV LS RGG+ G G K ++
Sbjct: 56 SVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELG-KGPKIRRC 114
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T ++GV+R E+ ++Y +ID+V I+ KL+K
Sbjct: 115 EVTLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRK 152
[16][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 92.8 bits (229), Expect = 2e-17
Identities = 56/113 (49%), Positives = 75/113 (66%), Gaps = 4/113 (3%)
Frame = +3
Query: 231 VRAQSAKAAAGTVR---IIIQGRKLPVTDAIKLYVEEKVAKAVANFS-HTLKEVDVTLSA 398
VRA A+A A + +I+QGR L +T+AI+ Y E+K+ KAV++F H ++EVDVT SA
Sbjct: 31 VRASGARAMAAPAKGTKVIVQGRHLEITEAIRDYCEQKINKAVSHFDMHDVREVDVTCSA 90
Query: 399 RGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
R G Q +VT+YT RNGVVR E+ +NLYA+ID V DKI KL+K
Sbjct: 91 RSEKQ--QGGDLQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIERKLRK 140
[17][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/98 (46%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++I+QG+ L +T A+K YVEEK+ KAV SH +EVDV LS RGG+ G G K ++
Sbjct: 84 SVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELG-KGPKIRRC 142
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T ++GV+R E+ ++Y +ID+V I+ KL+K
Sbjct: 143 EVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRK 180
[18][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 90.5 bits (223), Expect = 8e-17
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +3
Query: 195 VVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLK 374
++A RS V S +VR+I+QGR + + + +K ++EEK +AVA S +K
Sbjct: 57 LLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVK 116
Query: 375 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 554
EVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL I+ KL+
Sbjct: 117 EVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLR 175
Query: 555 K 557
K
Sbjct: 176 K 176
[19][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10AC8_ORYSJ
Length = 241
Score = 90.5 bits (223), Expect = 8e-17
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +3
Query: 195 VVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLK 374
++A RS V S +VR+I+QGR + + + +K ++EEK +AVA S +K
Sbjct: 57 LLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVK 116
Query: 375 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 554
EVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL I+ KL+
Sbjct: 117 EVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLR 175
Query: 555 K 557
K
Sbjct: 176 K 176
[20][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 90.5 bits (223), Expect = 8e-17
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +3
Query: 195 VVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLK 374
++A RS V S +VR+I+QGR + + + +K ++EEK +AVA S +K
Sbjct: 57 LLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVK 116
Query: 375 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 554
EVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL I+ KL+
Sbjct: 117 EVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLR 175
Query: 555 K 557
K
Sbjct: 176 K 176
[21][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 90.1 bits (222), Expect = 1e-16
Identities = 49/123 (39%), Positives = 79/123 (64%)
Frame = +3
Query: 189 MAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHT 368
+AV ATR R + VR + +VR+I+Q R +++ +K ++E+KV +AV+ H
Sbjct: 47 VAVDATRRRRVSVSVR-MAWDGPLSSVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHL 105
Query: 369 LKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAK 548
++EVDV LSARGG+ G G K + E+T++T R+GV+R E+ + YA+IDL ++ K
Sbjct: 106 VREVDVRLSARGGELG-RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRK 164
Query: 549 LQK 557
L+K
Sbjct: 165 LRK 167
[22][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJW3_9ROSI
Length = 268
Score = 90.1 bits (222), Expect = 1e-16
Identities = 46/98 (46%), Positives = 69/98 (70%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 84 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 142
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T R+GVVR E+ +YA+IDL I+ KL+K
Sbjct: 143 EVTLFTKRHGVVRAEEDAETIYASIDLASSIIQRKLRK 180
[23][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/98 (46%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 9 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 67
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T R+GVVR E+ ++A+IDLV I+ KL+K
Sbjct: 68 EVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRK 105
[24][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/98 (46%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+V++IIQG+ L ++D +K +VE+KV KAV SH ++ VDV LS RGG+ G G + ++
Sbjct: 84 SVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG-KGPRIRRC 142
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++T R+GVVR E+ ++A+IDLV I+ KL+K
Sbjct: 143 EVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRK 180
[25][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 89.4 bits (220), Expect = 2e-16
Identities = 43/98 (43%), Positives = 70/98 (71%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+VR+I+QGR + ++D +K ++E+KV +AV+ H ++EVDV LSARGG+ G G K +
Sbjct: 71 SVRLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG-RGPKTSRC 129
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
E+T+++ R+GV+R E+ + YA+IDL I+ KL+K
Sbjct: 130 EITLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRK 167
[26][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 78.6 bits (192), Expect = 3e-13
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG+ L +TDAI YV++K+AKAV++F EVDV LS Q E
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSVA---RNPRINPRQTAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTIY NG V+R +++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRK 93
[27][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 77.4 bits (189), Expect = 7e-13
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +3
Query: 270 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 449
+++IQG+ + +TDAI+ YV+EK+ +AV++F+ EVDV LS Q EV
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVSHFAQITSEVDVNLSVA---RNPRISASQSAEV 59
Query: 450 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
T+Y NG V+R E++ NLYA+ID V DK+ KL+K
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRK 94
[28][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 76.6 bits (187), Expect = 1e-12
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++I G+ + +TDAI+ YV +K+ KAV +F + EVDV LS AR T Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINT----RQAA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKISRQLRK 93
[29][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 76.6 bits (187), Expect = 1e-12
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
+R++I G+ + +TD I+ Y+ +K+ +A ++F + + EVDV LS AR T +Q
Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNRSTA----PKQTA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT++ + V+R E++ NLYA+IDLV DKI KL+K
Sbjct: 57 EVTVF-VNGSVIRAEESSENLYASIDLVADKIARKLRK 93
[30][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 76.6 bits (187), Expect = 1e-12
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++I G+ + +TDAI+ YV +K+ KAV +F + EVDV LS AR T Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSVARNPRINT----RQAA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKISRQLRK 93
[31][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +3
Query: 270 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 449
+++IQG+ + +TDAI+ YV+EK+ +AV +F+ EVDV LS Q EV
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVKHFAQITSEVDVNLSVA---RNPRISANQSAEV 59
Query: 450 TIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
T+Y NG V+R E++ NLYA+ID V DK+ KL+K
Sbjct: 60 TVYA--NGTVIRAEESSENLYASIDRVADKLARKLRK 94
[32][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 76.3 bits (186), Expect = 1e-12
Identities = 42/97 (43%), Positives = 65/97 (67%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+K+ +TD IK VE+K++K + + H EV VT+SAR K +QK+E
Sbjct: 7 MKILITGKKIELTDGIKGAVEDKLSK-LDRYLHEDTEVKVTVSAR--------KAKQKIE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++R ED+E NLYAAID+V DK+ +L++
Sbjct: 58 VTIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRR 94
[33][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 76.3 bits (186), Expect = 1e-12
Identities = 41/97 (42%), Positives = 62/97 (63%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I G+ + +TDAI+ YV +K+ KAV++F + EVDV LS T +Q E
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSVARNPRIT---TKQAAE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTIFA-NGSVIRAEESSENLYASIDLVADKIARQLRK 93
[34][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 75.5 bits (184), Expect = 3e-12
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI T+ ++R ED + NLY AID+V DK+ +L+K
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKK 88
[35][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 75.1 bits (183), Expect = 3e-12
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI T+ ++R ED + NLY AID+V DK+ +L+K
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKK 88
[36][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 75.1 bits (183), Expect = 3e-12
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+ III G+++ +TDAIK +E K++K + N+ H +V VT+SAR K QK+E
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSAR--------KARQKIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI T+ ++R ED + NLY AID+V DK+ +L+K
Sbjct: 52 VTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKK 88
[37][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 75.1 bits (183), Expect = 3e-12
Identities = 40/97 (41%), Positives = 61/97 (62%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I G+ + +TDAI+ YV++K+ KA +F + E+DV LS +Q E
Sbjct: 1 MKLVIHGKNIEITDAIRDYVQQKIEKAANHFQNLTTEIDVHLSVA---RNPRINPKQTAE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTIYT V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTIYT-NGSVIRAEESSENLYASIDLVSDKIARQLRK 93
[38][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 74.7 bits (182), Expect = 4e-12
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++IQG+ + +TD+I+ YV +K+ KAV +F + EVDV LS AR T +Q
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQNMTTEVDVHLSVARNPRINT----KQTA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY + V+R +++ +LYA+IDLV DKI+ +L+K
Sbjct: 57 EVTIYANKT-VIRAQESSEDLYASIDLVADKIQRQLRK 93
[39][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 73.9 bits (180), Expect = 7e-12
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT+AI YVEEKV +AV +F + +VDV LS T+ + K E
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSVARNARITN---KHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVADKIARQLRK 93
[40][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 73.6 bits (179), Expect = 1e-11
Identities = 40/97 (41%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++R ED E++LYAAID+VCDK+ ++ K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVK 88
[41][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 73.6 bits (179), Expect = 1e-11
Identities = 40/97 (41%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++R ED E++LYAAID+VCDK+ ++ K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVK 88
[42][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 73.6 bits (179), Expect = 1e-11
Identities = 40/97 (41%), Positives = 63/97 (64%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++II+ GR++ +TD IK YV+ K+++ + + EV VT+SA+ K QKVE
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSR-LEKYLDPESEVKVTVSAK--------KDRQKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++R ED E++LYAAID+VCDK+ ++ K
Sbjct: 52 VTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVK 88
[43][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 73.6 bits (179), Expect = 1e-11
Identities = 38/97 (39%), Positives = 64/97 (65%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG+ + +TDAI+ +V +K+ KA A+F + +VDV LS + +Q E
Sbjct: 1 MKLVIQGKNIEITDAIRSHVHQKIEKATAHFQTLINKVDVCLSVQ---NNPRIAPKQTAE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ L N VVR E++ +LYA+ID+V DK+ +L+K
Sbjct: 58 VTVF-LNNVVVRAEESSESLYASIDMVTDKLTRQLRK 93
[44][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++I + + +TDAI+ YV +K+ KA ++F EVDV LS AR T Q
Sbjct: 1 MKLVIHSKNIEITDAIREYVHQKIEKAASHFQSITNEVDVHLSVARNPRINT----RQAA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKIARQLRK 93
[45][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++I G+ + +TDAI+ YV +K+ +AV +F EV+V LS AR T +Q
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIERAVNHFQSITNEVNVHLSVARNPRIST----KQAA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 57 EVTIYA-NGSVIRAEESSENLYASIDLVADKIARQLRK 93
[46][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 73.2 bits (178), Expect = 1e-11
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++++QG+ L +T+AI YV +K+ KAV+++ EVDV LS +Q E
Sbjct: 1 MKLVVQGKNLEITEAIHEYVHQKITKAVSHYQQLTNEVDVHLSIA---RNPRINPKQTAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTIY NG V+R +++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRK 93
[47][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 72.8 bits (177), Expect = 2e-11
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG+ + +TD+I YV +K+ KAV +F EVDV LS +Q E
Sbjct: 1 MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVA---RNPRINPKQTAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTIY NG V+R +++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTIYA--NGTVIRAQESSENLYASIDLVADKIARQLRK 93
[48][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 72.4 bits (176), Expect = 2e-11
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKV 443
++++IQG + VT+AI YV+EK+ KAV +F +VDV LS A+ G + + K
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQEKLEKAVKHFQAITTKVDVHLSVAKNGRV----QNKHKA 56
Query: 444 EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT+Y V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 57 EVTVYA-NGAVIRAQEGSENLYASIDLVSDKIARQLRK 93
[49][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 71.6 bits (174), Expect = 4e-11
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKK--EQK 440
+++++QG + VT AI YV++K+ KAV+++ L E+DV LS H K Q
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLS-----VAKHAKSNPRQT 55
Query: 441 VEVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY NG V+R E+ NLYA+IDLV DKI +L+K
Sbjct: 56 AEVTIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKK 93
[50][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 71.6 bits (174), Expect = 4e-11
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKK--EQK 440
+++++QG + VT AI YV++K+ KAV+++ L E+DV LS H K Q
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLS-----VAKHAKSNPRQT 55
Query: 441 VEVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVTIY NG V+R E+ NLYA+IDLV DKI +L+K
Sbjct: 56 AEVTIYA--NGTVIRAEECNENLYASIDLVSDKITRQLKK 93
[51][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
Length = 127
Score = 71.6 bits (174), Expect = 4e-11
Identities = 39/88 (44%), Positives = 54/88 (61%)
Frame = +3
Query: 294 LPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG 473
+ +TD +K +VE+KV KAV FSH ++EVD LS RGG+ G + I R+G
Sbjct: 1 MQLTDTVKEHVEDKVGKAVQKFSHLVREVDARLSVRGGELGKGPR--------IRKCRHG 52
Query: 474 VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VVR E+ +YA IDLV I++KL+K
Sbjct: 53 VVRAEEDSETIYATIDLVLSIIQSKLRK 80
[52][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 71.2 bits (173), Expect = 5e-11
Identities = 37/97 (38%), Positives = 61/97 (62%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I G+ + +TDAI+ YV +K+ KA ++ + E+DV LS T +Q E
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSVARNPRIT---TKQTAE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ + V+R E++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTLF-VNGSVIRAEESSENLYASIDLVADKIARQLRK 93
[53][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 70.9 bits (172), Expect = 6e-11
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT+AI YVE+K+ KAV +F+ +VDV LS + K E
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 93
[54][TOP]
>UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
tauri RepID=Q00W70_OSTTA
Length = 184
Score = 70.5 bits (171), Expect = 8e-11
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Frame = +3
Query: 234 RAQSAKAAAGT-VRIIIQGRKLPVTDAIKLYVEEKVAKAVANF-SHTLKEVDVTLSARGG 407
RA KA+ T V++++QG L +T AI YV K+ +A ++ S ++EVDV SARGG
Sbjct: 38 RAVQTKASTNTDVKMLVQGLHLEITPAIDEYVRSKIGRACSHVDSRDIREVDVRCSARGG 97
Query: 408 DTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ G+ G E K EVT+ R + + NLYA ID D + ++K
Sbjct: 98 E-GSKGGVEHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRK 146
[55][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 69.7 bits (169), Expect = 1e-10
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT+AI YV++K+ KAV +F +VDV LS + + K E
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQQKLEKAVKHFQTLTTKVDVHLSVA---KNARIQNKHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 93
[56][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 68.9 bits (167), Expect = 2e-10
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+++++IQG + VT++I YV+EK+ KAV +F +VDV LS T+ + K
Sbjct: 7 SMKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSVARNARITN---KHKA 63
Query: 444 EVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT+Y NG V+R ++ +LYA+IDLV DKI +L+K
Sbjct: 64 EVTVYA--NGTVIRAQEGSESLYASIDLVSDKIARQLRK 100
[57][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 68.2 bits (165), Expect = 4e-10
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R+ + G+ + +TD IK Y E+K+ K + + EV VT+SA GK QKVE
Sbjct: 9 MRVTVTGKHVKLTDGIKGYTEDKLKK-LGKYLDEDTEVKVTVSA--------GKNRQKVE 59
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
V I + +RVE+ ++NLY AIDLVCDK+ ++ K
Sbjct: 60 VMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQIIK 96
[58][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT+ I YVE+K+ KAV +F+ +VDV LS + + E
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSV---EKNARIPDRHRAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 93
[59][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 67.4 bits (163), Expect = 7e-10
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = +3
Query: 264 TVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV 443
+++++IQG + VT++I YV +K+ KAV ++ +VDV LS T+ + K
Sbjct: 2 SMKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSVAKNARITN---KHKA 58
Query: 444 EVTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
EVT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 59 EVTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 95
[60][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 67.4 bits (163), Expect = 7e-10
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT++I YVE K+ KA +F +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANNARIT---DKHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 93
[61][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 66.6 bits (161), Expect = 1e-09
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT++I YV++K+ KAV ++ +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIDVTESINDYVKQKLEKAVKHYQTFTTKVDVHLSVAKNARIT---DKHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKISRQLRK 93
[62][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 65.9 bits (159), Expect = 2e-09
Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++IQG + VT++I YV +K+ KAV ++ +VDV LS T + K E
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTFTTKVDVHLSVAKNARIT---DKHKAE 57
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+Y NG V+R ++ NLYA+IDLV DKI +L+K
Sbjct: 58 VTVYA--NGTVIRAQEGSENLYASIDLVSDKIARQLRK 93
[63][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 63.9 bits (154), Expect = 8e-09
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT A++ Y E K+ +A+ NF +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRR 92
[64][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 63.9 bits (154), Expect = 8e-09
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT A++ Y E K+ +A+ NF +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRR 92
[65][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 63.2 bits (152), Expect = 1e-08
Identities = 35/97 (36%), Positives = 59/97 (60%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT A++ Y E K+++AV++F+ ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ V+R ++ NLYA+IDLV K+ +LQ+
Sbjct: 57 VTLFA-SGTVIRAQERSQNLYASIDLVAGKLARQLQR 92
[66][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 62.8 bits (151), Expect = 2e-08
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT A++ Y E K+ +A+ +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLARQLRR 92
[67][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[68][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[69][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[70][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[71][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[72][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[73][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT AI+ Y E K+ +A+ +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTPAIREYTETKLTRAITHFEGMVKEADVHLSVARNPR----VPQQIAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ +NLYA+IDLV K+ +L +
Sbjct: 57 VTMFA--NGTVIRAQEHSDNLYASIDLVASKLTRQLNR 92
[74][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T +++ Y + K+ KA NF ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTQSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV +K+ +L+K
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLARQLRK 92
[75][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 61.6 bits (148), Expect = 4e-08
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T A+K Y + K+ KA ++ +KE D+ LS + + Q E
Sbjct: 1 MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSL----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG V+R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTVIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[76][TOP]
>UniRef100_A2BV60 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=A2BV60_PROM5
Length = 194
Score = 61.6 bits (148), Expect = 4e-08
Identities = 34/97 (35%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ + +T A+K Y E K+ KA ++ +KE D+ LS ++ Q E
Sbjct: 1 MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSY----QTAE 56
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ ++R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA-SGTIIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[77][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 61.6 bits (148), Expect = 4e-08
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +3
Query: 273 IIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV-EV 449
I I GRK+ V+DA++ +V+ KV A+ F T DV L H ++K EV
Sbjct: 4 IKISGRKVSVSDALRDHVQHKVGDALKVFDITPMSCDVVLRV----DKNHSNPDRKTCEV 59
Query: 450 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
T+Y +RN VVRVE + ++YAAID DK+ +L+K
Sbjct: 60 TVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRK 94
[78][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 61.2 bits (147), Expect = 5e-08
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ KA+ +F +KE DV LS +Q E
Sbjct: 1 MKVLIHGRNLELTPALREYTKSKLEKAIHHFGDMVKEADVHLSVAKNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV +K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSQNLYASIDLVSNKLCRQLRR 92
[79][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 61.2 bits (147), Expect = 5e-08
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ +A+ +F +KE DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRR 92
[80][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 61.2 bits (147), Expect = 5e-08
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ +A+ +F +KE DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPS----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRR 92
[81][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 61.2 bits (147), Expect = 5e-08
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T +++ Y + K+ KA NF ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV +K+ +L+K
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLARQLRK 92
[82][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 61.2 bits (147), Expect = 5e-08
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT AI+ Y E K+ +A+ ++ +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLDVTPAIRDYTEAKLGRAINHYEGLVKEADVHLSVARNPRVA----QQTAE 56
Query: 447 VTIYTLRNGVV-RVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NGVV R ++ NLYA+ID+V K+ +L++
Sbjct: 57 VTVFA--NGVVIRAQERSENLYASIDMVAGKLSRQLRR 92
[83][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 60.8 bits (146), Expect = 6e-08
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L+K
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVVGKLARQLRK 92
[84][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 60.8 bits (146), Expect = 6e-08
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L+K
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVVGKLARQLRK 92
[85][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 60.5 bits (145), Expect = 8e-08
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I+I G+ L +T +K Y E K+ KA ++ +KE D+ LS + Q E
Sbjct: 1 MKILIHGKNLELTGPLKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSF----QTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI+ NG ++R E+ NLY++IDLV +K+ KL+K
Sbjct: 57 VTIFA--NGTIIRAEEKTENLYSSIDLVSNKLCRKLRK 92
[86][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 60.5 bits (145), Expect = 8e-08
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L VT A++ Y E K+ +AV ++ + E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEVTAALREYTESKLERAVQHYDEMVVEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV +K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVANKLSRQLRR 92
[87][TOP]
>UniRef100_C9RBI8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Ammonifex degensii KC4 RepID=C9RBI8_9THEO
Length = 177
Score = 60.5 bits (145), Expect = 8e-08
Identities = 34/97 (35%), Positives = 62/97 (63%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+RI ++G+ + VT+A++ YVE+++ K + F++ L E V LS ++ KVE
Sbjct: 1 MRITVRGKNIEVTEALRQYVEKRLGK-LERFANYLGEAQVVLSLE--------RENHKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++R E+A +++YAAIDLV DK+ ++++
Sbjct: 52 VTI-NMNGMILRGEEATHDMYAAIDLVVDKLERQIER 87
[88][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 60.5 bits (145), Expect = 8e-08
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ +AV +F +KE DV LS +Q E
Sbjct: 1 MKLLIHGRNLELTPALRDYTQSKLERAVQHFDDMVKEADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLVASKLCRQLRR 92
[89][TOP]
>UniRef100_Q2B1U0 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. NRRL
B-14911 RepID=Q2B1U0_9BACI
Length = 184
Score = 59.3 bits (142), Expect = 2e-07
Identities = 35/93 (37%), Positives = 58/93 (62%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT AI+ YVE+K+AK F+ T + +V ++ + T+ KVEVTI
Sbjct: 5 IRGENIEVTPAIREYVEKKIAKLEKYFTET-PDANVHVNLK-----TYNNNRSKVEVTI- 57
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
++N V+R E+ ++YAAIDL+ DK+ +++K
Sbjct: 58 PMQNLVLRAEEDHEDMYAAIDLIVDKLERQIRK 90
[90][TOP]
>UniRef100_C9MUU2 Ribosomal subunit interface protein n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MUU2_9FUSO
Length = 106
Score = 59.3 bits (142), Expect = 2e-07
Identities = 35/97 (36%), Positives = 60/97 (61%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++III G++L +TDAIK Y EEKV+K ++ +S + E+DV L+ DT + G K +
Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKVSK-ISKYSDAITEIDVVLTVE--DTKSEG-PVHKAD 56
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+Y +++E +LYAAID + D++ +++K
Sbjct: 57 GLVYA-SGTKIKIEAENKDLYAAIDDLSDRLERQVRK 92
[91][TOP]
>UniRef100_A4SAX9 Plastid-specific ribosomal protein 1 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4SAX9_OSTLU
Length = 132
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 273 IIIQGRKLPVTDAIKLYVEEKVAKAVANFS-HTLKEVDVTLSARGGDTGTHGKKEQKVEV 449
+++QG L +T AI Y K+ KA ++ ++EVDV SARGG+ + G E K EV
Sbjct: 1 MLVQGLHLEITPAIDEYCRAKIGKACSHVDPREIREVDVRCSARGGED-SRGGHEHKTEV 59
Query: 450 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
T+ R + + NLYA ID D + ++K
Sbjct: 60 TVLMTRGTTLHADGTGENLYATIDSCADIVTRAIRK 95
[92][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 58.9 bits (141), Expect = 2e-07
Identities = 34/97 (35%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
V I I GRK+ +++A++ +V++K+ A+ F T DV L D + E
Sbjct: 2 VDIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRV---DKNPSNPDRKTTE 58
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ +RN VVRV + +++YAAID DK+ +L+K
Sbjct: 59 VTVF-VRNNVVRVTASSDDMYAAIDEAADKVSRQLRK 94
[93][TOP]
>UniRef100_C5NVZ2 Ribosome-associated factor Y n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NVZ2_9BACL
Length = 181
Score = 58.9 bits (141), Expect = 2e-07
Identities = 34/97 (35%), Positives = 59/97 (60%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R ++G L +T AI+ YVE KV+K F+ +L E +V +A+ + ++K+E
Sbjct: 2 LRYQVRGENLEITQAIREYVENKVSKLEKYFADSL-EANVYANAK-----VYKNNKKKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+T+ LR +R E+ +LYAA+DLV DK+ +++K
Sbjct: 56 ITV-PLRGVTLRAEETNEDLYAAVDLVVDKLERQMRK 91
[94][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
V I I GRK+ V+DA++ +VEEK+ A+ F DV L D + + VE
Sbjct: 2 VDIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRV---DKNPSNLERKSVE 58
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ +RN VVRV + +++Y AID +K+ +L+K
Sbjct: 59 VTVF-VRNSVVRVVSSGDDMYGAIDEAAEKVTRQLRK 94
[95][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I G+++ +T IK +E K++K S +V VT+SA+ G K+E
Sbjct: 9 MKLTISGKQMELTQGIKDNIESKLSKLDKYISPDT-DVKVTVSAKKG--------RHKIE 59
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI V+R E+++ NLY AIDLV DK++ +L+K
Sbjct: 60 VTIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLKK 96
[96][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 58.5 bits (140), Expect = 3e-07
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T +++ Y + K+ KA+ +F ++E DV LS + +Q E
Sbjct: 1 MKLLIHGRNLELTPSLREYTQSKLEKAIHHFDGIVQEADVHLSIAKNPS----VPQQIAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDLV K+ +L+K
Sbjct: 57 VTVFA--NGTVIRAQERSQNLYASIDLVATKLCRQLRK 92
[97][TOP]
>UniRef100_B7AN97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus
ATCC 43243 RepID=B7AN97_9BACE
Length = 179
Score = 58.5 bits (140), Expect = 3e-07
Identities = 38/97 (39%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R +I GR + VTD +K VEEK+ K + F EV VTLS K+ QK+E
Sbjct: 4 MRFVIVGRNIEVTDGLKEAVEEKLGK-LDRFFAPDTEVKVTLSVE--------KERQKIE 54
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI ++ ++R E N++Y +IDLV + I +L+K
Sbjct: 55 VTI-PVKGSIIRSEQVSNDMYVSIDLVEEVIERQLKK 90
[98][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 58.2 bits (139), Expect = 4e-07
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ +A +F + ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATHHFGNAVREADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDL K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAASKLARQLRR 92
[99][TOP]
>UniRef100_Q3AI28 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. CC9605 RepID=Q3AI28_SYNSC
Length = 195
Score = 58.2 bits (139), Expect = 4e-07
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T A++ Y + K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATSHFGDAVREADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDL K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAAGKLARQLRR 92
[100][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 57.8 bits (138), Expect = 5e-07
Identities = 35/93 (37%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G L VTDA+K YVE+K+ K F+ + ++ + + ++QKVEVTI
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNN------EKQKVEVTI- 57
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ N ++R ED ++YAAIDLV DK+ +++K
Sbjct: 58 PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRK 90
[101][TOP]
>UniRef100_B1HN67 Hypothetical yvyD protein n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HN67_LYSSC
Length = 183
Score = 57.4 bits (137), Expect = 7e-07
Identities = 34/93 (36%), Positives = 55/93 (59%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT AI+ YVE K+ K F+ DV +A + + K+ KVEVTI
Sbjct: 6 IRGENIEVTPAIREYVENKIEKVERYFNE-----DVNANANV-NLKVYNDKQTKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
++N +R E+ N++YAA+DL+ DK+ +++K
Sbjct: 59 PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRK 91
[102][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 57.4 bits (137), Expect = 7e-07
Identities = 36/97 (37%), Positives = 55/97 (56%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R II G+ + VT+ +K + EK+ K F+ E+ VTLS K QK+E
Sbjct: 1 MRYIISGKNIDVTEGLKSAIYEKIGKLEKYFNPEA-EIHVTLSVE--------KDRQKIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI ++ +VR E N++YA+IDLV + I +L+K
Sbjct: 52 VTI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLKK 87
[103][TOP]
>UniRef100_A3IC40 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. B14905
RepID=A3IC40_9BACI
Length = 183
Score = 57.4 bits (137), Expect = 7e-07
Identities = 34/93 (36%), Positives = 55/93 (59%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT AI+ YVE K+ K F+ DV +A + + K+ KVEVTI
Sbjct: 6 IRGENIEVTPAIREYVENKIEKVERYFNE-----DVNANANV-NLKVYNDKQTKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
++N +R E+ N++YAA+DL+ DK+ +++K
Sbjct: 59 PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRK 91
[104][TOP]
>UniRef100_Q5HHR8 Uncharacterized protein SACOL0815 n=1 Tax=Staphylococcus aureus
subsp. aureus COL RepID=Y815_STAAC
Length = 190
Score = 57.4 bits (137), Expect = 7e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L+N +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRK 91
[105][TOP]
>UniRef100_Q2YSH7 Uncharacterized protein SAB0704 n=35 Tax=Staphylococcus aureus
RepID=Y704_STAAB
Length = 190
Score = 57.4 bits (137), Expect = 7e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------DVPNAVAHVKVKTYSNSATKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L+N +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRK 91
[106][TOP]
>UniRef100_B9DV32 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus uberis 0140J RepID=B9DV32_STRU0
Length = 182
Score = 57.0 bits (136), Expect = 9e-07
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+AK F E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVEAKLAKIEKYFVED-SEIDTRVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + ++R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTII-LGSMILRAEDVSQDMYGSIDLVVDKIERQIRK 91
[107][TOP]
>UniRef100_A4VTG7 Ribosome-associated protein Y (PSrp-1) n=6 Tax=Streptococcus suis
RepID=A4VTG7_STRSY
Length = 192
Score = 57.0 bits (136), Expect = 9e-07
Identities = 34/108 (31%), Positives = 61/108 (56%)
Frame = +3
Query: 234 RAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDT 413
+ +S + ++ I+G L VT+A++ YVEEKVAK + + + +E++ ++ +
Sbjct: 3 KGESQERGTNMIKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNLK---- 57
Query: 414 GTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ K KVEVTI + +R ED +Y +IDLV DKI ++++
Sbjct: 58 -VYRDKRAKVEVTI-PVGAVTLRAEDISQEMYGSIDLVVDKIERQIRR 103
[108][TOP]
>UniRef100_D0CH01 Sigma 54 modulation protein n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CH01_9SYNE
Length = 195
Score = 57.0 bits (136), Expect = 9e-07
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++++I GR L +T +++ Y + K+ +A ++F ++E DV LS +Q E
Sbjct: 1 MKLLIHGRNLEITPSLRDYTQTKLERATSHFGDAVREADVHLSVARNPR----VPQQTAE 56
Query: 447 VTIYTLRNG-VVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT++ NG V+R ++ NLYA+IDL K+ +L++
Sbjct: 57 VTVFA--NGTVIRAQERSENLYASIDLAAGKLARQLRR 92
[109][TOP]
>UniRef100_C6SS06 Putative ribosome-associated protein n=2 Tax=Streptococcus mutans
RepID=C6SS06_STRMN
Length = 182
Score = 56.6 bits (135), Expect = 1e-06
Identities = 34/97 (35%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VTDAI+ YVE K+ K + + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLKK-IEKYFNAEQELDARINLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLAPVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[110][TOP]
>UniRef100_C7N909 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7N909_LEPBD
Length = 106
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/97 (32%), Positives = 60/97 (61%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++III G++L +TDAIK Y EEK+++ ++ +S + E+DV L+ DT + G K +
Sbjct: 1 MKIIISGKQLKITDAIKNYTEEKISR-ISKYSDAITEIDVVLTVE--DTKSEG-PVHKAD 56
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
++ +++E +LYAAID + D++ +++K
Sbjct: 57 GLVFA-SGTKIKIEAENKDLYAAIDDLSDRLERQVRK 92
[111][TOP]
>UniRef100_B1SBZ3 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SBZ3_9STRE
Length = 182
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/97 (32%), Positives = 58/97 (59%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ ++G + VTDAI+ YVE K+ K + + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSVRGENIEVTDAIRNYVESKLGK-IEKYFNAEQELDARVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTIL-VNSITLRAEDVSQDMYGSIDLVTDKIERQIRK 91
[112][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 56.2 bits (134), Expect = 2e-06
Identities = 34/97 (35%), Positives = 53/97 (54%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+E+K+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFN------DVPNAVAHVKVKTYQNSTTKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L+N +R E+ ++LYA IDLV K+ +++K
Sbjct: 56 VTI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRK 91
[113][TOP]
>UniRef100_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLX7_MOOTA
Length = 190
Score = 55.8 bits (133), Expect = 2e-06
Identities = 31/108 (28%), Positives = 63/108 (58%)
Frame = +3
Query: 234 RAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDT 413
R + ++ +A + +II+G+ LPVTDA++ Y+ +++ K + + + E+ V L+
Sbjct: 5 RKKGSERSASRMELIIRGKNLPVTDALRQYIAKRLGK-IERYLDGVDEIQVNLAVT---- 59
Query: 414 GTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ + VEVTI L ++R E+A ++Y ++DLV +K+ ++ K
Sbjct: 60 ----RDKHVVEVTI-PLNGYILRGEEATGDMYGSVDLVVEKLEKQIAK 102
[114][TOP]
>UniRef100_C5WIE9 Ribosome-associated factor Y n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WIE9_STRDG
Length = 182
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/97 (35%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKSSKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[115][TOP]
>UniRef100_A5Z528 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5Z528_9FIRM
Length = 179
Score = 55.8 bits (133), Expect = 2e-06
Identities = 36/97 (37%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++I I G+ + VT+ I+ VEEK+ K F+ + VDVTLS K EQKVE
Sbjct: 1 MKIKIFGKNIEVTEGIRSAVEEKIGKLDKYFAEETR-VDVTLSVN--------KNEQKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI ++ ++R E+ +++Y +ID+V + I +L K
Sbjct: 52 VTI-PVKGRIIRAEEISDDMYVSIDMVEETIERQLVK 87
[116][TOP]
>UniRef100_UPI00004C2450 COG1544: Ribosome-associated protein Y (PSrp-1) n=1
Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2450
Length = 182
Score = 55.5 bits (132), Expect = 3e-06
Identities = 33/97 (34%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K F+ +E+D ++ + + ++ KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[117][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 55.5 bits (132), Expect = 3e-06
Identities = 32/97 (32%), Positives = 58/97 (59%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+RI ++G+ + VT A++ YVE+++AK ++ F H V V LS K +VE
Sbjct: 1 MRIYVRGKNIEVTPALRGYVEKRLAK-LSKFEHHFGSVQVALSVE--------KDSHRVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+ + ++R E+ ++YA+IDLV +K+ +L++
Sbjct: 52 VTV-PIDGMILRGEEVTGDMYASIDLVVEKLEKQLER 87
[118][TOP]
>UniRef100_Q3CZ63 Ribosomal subunit interface protein n=6 Tax=Streptococcus
agalactiae RepID=Q3CZ63_STRAG
Length = 184
Score = 55.5 bits (132), Expect = 3e-06
Identities = 33/97 (34%), Positives = 59/97 (60%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K++K V + + +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEAQELDTRVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTIL-IDSITLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[119][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 55.5 bits (132), Expect = 3e-06
Identities = 34/97 (35%), Positives = 53/97 (54%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------NVPNAVAHVKVKTYQNSATKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L+N +R E+ ++LYA IDLV K+ +++K
Sbjct: 56 VTI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRK 91
[120][TOP]
>UniRef100_Q5XAQ7 Ribosome-associated factor Y n=10 Tax=Streptococcus pyogenes
RepID=RAFY_STRP6
Length = 182
Score = 55.5 bits (132), Expect = 3e-06
Identities = 33/97 (34%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K F+ +E+D ++ + + ++ KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFAKD-QEIDARVNLK-----VYRERSSKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[121][TOP]
>UniRef100_UPI0001B43CAF ribosomal subunit interface protein n=2 Tax=Listeria monocytogenes
RepID=UPI0001B43CAF
Length = 101
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/93 (36%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
L N V+R E+ +LYA+IDL+ DK+ +++K
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRK 91
[122][TOP]
>UniRef100_C0MH43 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Steptococcus equi subsp. zooepidemicus H70
RepID=C0MH43_STRS7
Length = 182
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/97 (35%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[123][TOP]
>UniRef100_C0M6F8 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Streptococcus equi subsp. equi 4047
RepID=C0M6F8_STRE4
Length = 182
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/97 (35%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K F +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTKIEKYFVEE-QEIDARVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[124][TOP]
>UniRef100_B9EAE7 Ribosomal subunit interface protein homolog n=1 Tax=Macrococcus
caseolyticus JCSC5402 RepID=B9EAE7_MACCJ
Length = 186
Score = 55.1 bits (131), Expect = 4e-06
Identities = 33/96 (34%), Positives = 59/96 (61%)
Frame = +3
Query: 270 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 449
R I G + VTDAI+ Y+EEK++K F++ + E + + + T+ + KVEV
Sbjct: 3 RFEIHGDNITVTDAIRNYIEEKLSKLERYFTN-VPEANAHVKIK-----TYQDGKSKVEV 56
Query: 450 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
TI L++ +R E+ N+LYAA++L+ +K+ +++K
Sbjct: 57 TI-PLKDVTLRAEERHNDLYAAVNLIVEKLERQIRK 91
[125][TOP]
>UniRef100_B4U4G1 Ribosomal subunit interface protein n=1 Tax=Streptococcus equi
subsp. zooepidemicus MGCS10565 RepID=B4U4G1_STREM
Length = 182
Score = 55.1 bits (131), Expect = 4e-06
Identities = 33/97 (34%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K+ K + + +E+D ++ + + +K KVE
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVVEQEIDARVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[126][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 55.1 bits (131), Expect = 4e-06
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K + + T EV V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSK-IERYFDTFPEVKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKIERQIRK 87
[127][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/93 (36%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
L N V+R E+ +LYA+IDL+ DK+ +++K
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRK 91
[128][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/93 (36%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFTET-PDANVHVNLK-----VYSDKNAKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
L N V+R E+ +LYA+IDL+ DK+ +++K
Sbjct: 59 PLPNLVLRAEETSGDLYASIDLIVDKLERQIRK 91
[129][TOP]
>UniRef100_C6JQA9 Ribosome-associated protein Y n=1 Tax=Fusobacterium varium ATCC
27725 RepID=C6JQA9_FUSVA
Length = 183
Score = 55.1 bits (131), Expect = 4e-06
Identities = 37/97 (38%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I G++L VTDAIK Y E K+ + V + ++ E+DV+LSA TG+ E
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGR-VEKYHDSIIELDVSLSAVRTKTGS----SHTAE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
V Y L ++ + +LYAAID V D I A+L+K
Sbjct: 56 VLAY-LSGSTLKASCTDTDLYAAIDQVSDIIEAQLKK 91
[130][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 55.1 bits (131), Expect = 4e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT+ I+ YVE+K+ K F+ T + +V ++ + + K KVEVTI
Sbjct: 6 IRGENIEVTEPIRDYVEKKIDKLERYFNET-PDANVHVNLK-----VYSDKSAKVEVTI- 58
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
L N V+R E+ +LYA++DL+ DK+ +++K
Sbjct: 59 PLPNLVLRAEETNGDLYASVDLIADKLERQIRK 91
[131][TOP]
>UniRef100_C0CJV5 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
DSM 10507 RepID=C0CJV5_9FIRM
Length = 175
Score = 55.1 bits (131), Expect = 4e-06
Identities = 35/97 (36%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+ II G+ L VTD ++ VE+K+ K F+ E+ VTLS K QK+E
Sbjct: 1 MNFIISGKNLTVTDGLRTAVEDKLGKLERYFTPD-TEIIVTLSVE--------KSRQKIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI ++ ++R E N++Y +IDLV + I +L+K
Sbjct: 52 VTI-PVKGNIIRSEQVSNDMYVSIDLVEEVIERQLRK 87
[132][TOP]
>UniRef100_Q49VV1 Uncharacterized protein SSP1964 n=1 Tax=Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305
RepID=Y1964_STAS1
Length = 190
Score = 55.1 bits (131), Expect = 4e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ DV + T+ K+E
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGKLERYFN------DVPNATAHVKVKTYQNSATKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L+ +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKKVTLRAEERNDDLYAGIDLINNKLERQVRK 91
[133][TOP]
>UniRef100_Q7NMI0 Glr0786 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NMI0_GLOVI
Length = 187
Score = 54.7 bits (130), Expect = 5e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I G+ + VT+ I+ YV K+ K A+F VDV LS + E
Sbjct: 1 MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVA---RNPRISRSHSAE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+ ++R E+ NLYA+IDLV DK+ +++K
Sbjct: 58 VTVQA-SGTIIRAEEETENLYASIDLVADKLHRQMRK 93
[134][TOP]
>UniRef100_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
RepID=Q0B0B5_SYNWW
Length = 181
Score = 54.7 bits (130), Expect = 5e-06
Identities = 32/97 (32%), Positives = 59/97 (60%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ II+GR + +TDA+K Y ++++K + + +KE V LS G D KVE
Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSK-LEKYIDDVKEAQVALSIEGED--------HKVE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L ++R E+ +++Y++ID+V +K+ +++K
Sbjct: 52 VTI-PLNGIILRGEEMSDDMYSSIDMVEEKLEKQIEK 87
[135][TOP]
>UniRef100_B7GL70 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Anoxybacillus
flavithermus WK1 RepID=B7GL70_ANOFW
Length = 182
Score = 54.7 bits (130), Expect = 5e-06
Identities = 34/93 (36%), Positives = 56/93 (60%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT AI+ YVE+K+ K F T + V V ++ + + K+ K+EVTI
Sbjct: 5 IRGENIEVTQAIREYVEKKIGKLERYFEST-EGVTVHVNLK-----VYNDKQAKIEVTI- 57
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ V+R E+ +++YAAIDLV DK+ +++K
Sbjct: 58 PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRK 90
[136][TOP]
>UniRef100_A8MJN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJN7_ALKOO
Length = 181
Score = 54.7 bits (130), Expect = 5e-06
Identities = 33/97 (34%), Positives = 58/97 (59%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++I+ GR + +TDA++ VE K++K F + L E TLS + K Q +E
Sbjct: 1 MKVIVSGRNMNITDALRDTVESKLSKLDKFFYNEL-EAQATLSVQ--------KNRQIIE 51
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + ++RVE+A +++Y++ID DK+ +L+K
Sbjct: 52 VTI-PINGSILRVEEATDDMYSSIDNAVDKLTRQLRK 87
[137][TOP]
>UniRef100_Q3DA79 Ribosomal subunit interface protein n=2 Tax=Streptococcus
agalactiae RepID=Q3DA79_STRAG
Length = 184
Score = 54.7 bits (130), Expect = 5e-06
Identities = 33/97 (34%), Positives = 58/97 (59%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+AI+ YVE K++K F+ +E+D ++ + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSKVEKYFNEE-QELDTRVNLK-----VYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI + + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTIL-IDSITLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[138][TOP]
>UniRef100_C4BVH6 Sigma 54 modulation protein; SSU ribosomal protein S30P n=1
Tax=Sebaldella termitidis ATCC 33386 RepID=C4BVH6_9FUSO
Length = 106
Score = 54.7 bits (130), Expect = 5e-06
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKV- 443
+ III GR+L VT+ IK Y EEK+ + F H + E+DVTLS K E ++
Sbjct: 1 MNIIISGRRLEVTEPIKKYAEEKIGRVNKYFDH-ITEIDVTLSVE------KSKVEGEIH 53
Query: 444 EVTIYTLRNGV-VRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ NG+ ++VE + +LYAAID D + K+++
Sbjct: 54 RADVLLFGNGLKLKVEMEDKDLYAAIDKATDVLERKVRQ 92
[139][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 54.7 bits (130), Expect = 5e-06
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T E+ V L ++Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYS--------EKQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKIERQIRK 87
[140][TOP]
>UniRef100_C5D7S1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. WCH70 RepID=C5D7S1_GEOSW
Length = 182
Score = 54.3 bits (129), Expect = 6e-06
Identities = 31/93 (33%), Positives = 58/93 (62%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A++ YVE+K+ K F +T +++ V ++ + + K+ K+EVTI
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENT-EDIHVHVNLK-----VYNDKQGKIEVTI- 57
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DK+ +++K
Sbjct: 58 PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK 90
[141][TOP]
>UniRef100_C5QVF5 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis W23144 RepID=C5QVF5_STAEP
Length = 189
Score = 54.3 bits (129), Expect = 6e-06
Identities = 33/97 (34%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEKV K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFN------NVPNAVAHVRVKTYSNSTTKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L++ +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRK 91
[142][TOP]
>UniRef100_C5QQC2 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis M23864:W1 RepID=C5QQC2_STAEP
Length = 191
Score = 54.3 bits (129), Expect = 6e-06
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------NVPNAVAHVKVKTYSNSATKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L++ +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRK 91
[143][TOP]
>UniRef100_C4W9L5 Ribosomal subunit interface protein n=1 Tax=Staphylococcus warneri
L37603 RepID=C4W9L5_STAWA
Length = 191
Score = 54.3 bits (129), Expect = 6e-06
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEK+ K F+ +V + T+ KVE
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFN------NVPNAVAHVKVKTYSNSTTKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L++ +R E+ ++LYA +DL+ +K+ +++K
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGVDLITNKLERQVRK 91
[144][TOP]
>UniRef100_C4DYV6 SSU ribosomal protein S30P n=1 Tax=Streptobacillus moniliformis DSM
12112 RepID=C4DYV6_9FUSO
Length = 102
Score = 54.3 bits (129), Expect = 6e-06
Identities = 34/97 (35%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++III G++L +T+ IK YVE K++K + + + E DVTL+ T + GK K
Sbjct: 1 MKIIISGKQLEMTEPIKKYVESKISK-ITKYLENIPETDVTLTVE--PTKSEGKL-YKAI 56
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
T+Y N +R E+ + +LYAAID + + +++K
Sbjct: 57 ATVYA-PNKTIRQEETDADLYAAIDNLSSGLERQVRK 92
[145][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 54.3 bits (129), Expect = 6e-06
Identities = 34/97 (35%), Positives = 52/97 (53%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+ I + GRK VTDA++ +V+EK+ +A+ F DV L + VE
Sbjct: 1 MEIKVSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRY---EKNPSNPNPAIVE 57
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VT+ R V+RV + ++YAAIDL DK+ +L+K
Sbjct: 58 VTV-RARGSVIRVAEHGADMYAAIDLAADKVTRQLRK 93
[146][TOP]
>UniRef100_Q5HQX7 Uncharacterized protein SERP0419 n=3 Tax=Staphylococcus epidermidis
RepID=Y419_STAEQ
Length = 189
Score = 54.3 bits (129), Expect = 6e-06
Identities = 33/97 (34%), Positives = 54/97 (55%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+EEKV K F+ +V + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFN------NVPNAVAHVRVKTYSNSTTKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L++ +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRK 91
[147][TOP]
>UniRef100_P47995 Uncharacterized protein Sca_0400 n=1 Tax=Staphylococcus carnosus
subsp. carnosus TM300 RepID=Y400_STACT
Length = 188
Score = 54.3 bits (129), Expect = 6e-06
Identities = 32/97 (32%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+R I G L +TDAI+ Y+E+KV K F++ + V+ + + T+ K+E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKLERYFTN-VPNVNAHVKVK-----TYANSSTKIE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI L + +R E+ ++LYA IDL+ +K+ +++K
Sbjct: 56 VTI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRK 91
[148][TOP]
>UniRef100_Q8RG57 Probable sigma(54) modulation protein n=1 Tax=Fusobacterium
nucleatum subsp. nucleatum RepID=Q8RG57_FUSNN
Length = 181
Score = 53.9 bits (128), Expect = 8e-06
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ Y L ++ E++LYA+ID D + + L+K
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKK 91
[149][TOP]
>UniRef100_C3WX26 Sigma(54) modulation protein n=2 Tax=Fusobacterium
RepID=C3WX26_9FUSO
Length = 181
Score = 53.9 bits (128), Expect = 8e-06
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ Y L ++ E++LYA+ID D + + L+K
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKK 91
[150][TOP]
>UniRef100_C3WRR7 Sigma(54) modulation protein n=3 Tax=Fusobacterium
RepID=C3WRR7_9FUSO
Length = 181
Score = 53.9 bits (128), Expect = 8e-06
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I GRK+ +TDAI+ Y EEK++K V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTG----NAHVTE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ Y L ++ E++LYA+ID D + + L+K
Sbjct: 56 ILAY-LSGSTLKATATESDLYASIDKAVDIMESLLKK 91
[151][TOP]
>UniRef100_C3WKA5 Sigma(54) modulation protein n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WKA5_9FUSO
Length = 181
Score = 53.9 bits (128), Expect = 8e-06
Identities = 33/97 (34%), Positives = 55/97 (56%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
+++ I GRK+ +TDAIK Y EEK+++ V F+ ++ ++D TL+A TG E
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTG----NAHVTE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ Y L ++ E +LYA+ID D + +L+K
Sbjct: 56 ILAY-LSGSTLKATATETDLYASIDKAVDIMENQLKK 91
[152][TOP]
>UniRef100_B7IPV2 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=B7IPV2_BACC2
Length = 180
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRK 87
[153][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T EV V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEVKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DK+ +++K
Sbjct: 55 PFTDLLLRAEETHSDMYAAIDLVVDKVERQIRK 87
[154][TOP]
>UniRef100_C2U573 Ribosome-associated factor Y n=3 Tax=Bacillus cereus
RepID=C2U573_BACCE
Length = 180
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRK 87
[155][TOP]
>UniRef100_B7HEI9 Ribosomal subunit interface protein n=9 Tax=Bacillus cereus group
RepID=B7HEI9_BACC4
Length = 180
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRK 87
[156][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = +3
Query: 267 VRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVE 446
++ I+G + VT+A++ YVE K++K F+ D L+AR + + +K KVE
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSKVEKYFNE-----DQELNARV-NLKVYREKTAKVE 55
Query: 447 VTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
VTI T + +R ED ++Y +IDLV DKI +++K
Sbjct: 56 VTIPT-GSVTLRAEDVSQDMYGSIDLVVDKIERQIRK 91
[157][TOP]
>UniRef100_C0X601 Ribosome-associated inhibitor protein Y n=22 Tax=Enterococcus
faecalis RepID=C0X601_ENTFA
Length = 189
Score = 53.9 bits (128), Expect = 8e-06
Identities = 37/96 (38%), Positives = 57/96 (59%)
Frame = +3
Query: 270 RIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEV 449
R ++G + VT+AI+ YVE+KV K FS + E V ++ + + +K KVEV
Sbjct: 9 RYNVRGENIEVTEAIRDYVEKKVGKLERYFSDS-PEATVHVNLK-----VYTEKTAKVEV 62
Query: 450 TIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
TI L V+R E+ +LYA+IDLV DK+ +++K
Sbjct: 63 TI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRK 97
[158][TOP]
>UniRef100_B5UPY3 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B5UPY3_BACCE
Length = 180
Score = 53.9 bits (128), Expect = 8e-06
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +3
Query: 279 IQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIY 458
I+G + VT A+K YVE+K++K F T E+ V L +Q+VEVTI
Sbjct: 5 IRGENIEVTPALKEYVEKKLSKLERYFD-TFPEIKVNLKVYSD--------KQRVEVTI- 54
Query: 459 TLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 557
+ ++R E+ +++YAAIDLV DKI +++K
Sbjct: 55 PFTDLLLRAEETNSDMYAAIDLVVDKIERQIRK 87