[UP]
[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 273 bits (697), Expect = 6e-72
Identities = 131/131 (100%), Positives = 131/131 (100%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 270 bits (691), Expect = 3e-71
Identities = 129/131 (98%), Positives = 131/131 (100%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259
[3][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 268 bits (685), Expect = 1e-70
Identities = 128/131 (97%), Positives = 130/131 (99%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[4][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 268 bits (684), Expect = 2e-70
Identities = 128/131 (97%), Positives = 130/131 (99%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 265 bits (678), Expect = 9e-70
Identities = 127/131 (96%), Positives = 129/131 (98%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 265 bits (678), Expect = 9e-70
Identities = 127/131 (96%), Positives = 129/131 (98%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 263 bits (672), Expect = 4e-69
Identities = 126/131 (96%), Positives = 128/131 (97%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 260 bits (664), Expect = 4e-68
Identities = 123/131 (93%), Positives = 127/131 (96%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
PFFPFHNR N
Sbjct: 249 PFFPFHNRFFN 259
[9][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 258 bits (660), Expect = 1e-67
Identities = 122/131 (93%), Positives = 129/131 (98%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHN+LVN
Sbjct: 249 PVFPFHNKLVN 259
[10][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 256 bits (654), Expect = 5e-67
Identities = 122/131 (93%), Positives = 127/131 (96%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+LENNQHQVTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 251 bits (642), Expect = 1e-65
Identities = 121/131 (92%), Positives = 124/131 (94%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH VTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTL 248
Query: 35 PFFPFHNRLVN 3
P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 249 bits (635), Expect = 9e-65
Identities = 118/130 (90%), Positives = 125/130 (96%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH+VTL
Sbjct: 189 YGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTL 248
Query: 35 PFFPFHNRLV 6
P FPFHNRLV
Sbjct: 249 PLFPFHNRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 240 bits (612), Expect = 4e-62
Identities = 114/130 (87%), Positives = 122/130 (93%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN+ +VTL
Sbjct: 189 YGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTL 248
Query: 35 PFFPFHNRLV 6
P FPFHNRLV
Sbjct: 249 PLFPFHNRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 236 bits (601), Expect = 8e-61
Identities = 111/129 (86%), Positives = 120/129 (93%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYLENNQH+VTL
Sbjct: 189 YGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTL 248
Query: 35 PFFPFHNRL 9
PFFPFH+RL
Sbjct: 249 PFFPFHDRL 257
[15][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 229 bits (584), Expect = 7e-59
Identities = 107/130 (82%), Positives = 116/130 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH
Sbjct: 131 IVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHC 190
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQH VTL
Sbjct: 191 YGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTL 250
Query: 35 PFFPFHNRLV 6
PFFPFH+RLV
Sbjct: 251 PFFPFHDRLV 260
[16][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 228 bits (582), Expect = 1e-58
Identities = 106/129 (82%), Positives = 117/129 (90%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFMPV N NHSIHS
Sbjct: 131 IVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHS 190
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LEN+QH+VTL
Sbjct: 191 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTL 250
Query: 35 PFFPFHNRL 9
PFFPFH++L
Sbjct: 251 PFFPFHDKL 259
[17][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 224 bits (570), Expect = 3e-57
Identities = 106/129 (82%), Positives = 116/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHS+HS
Sbjct: 129 IIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LE NQH+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTL 248
Query: 35 PFFPFHNRL 9
P F FH RL
Sbjct: 249 PLFTFHGRL 257
[18][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 223 bits (569), Expect = 4e-57
Identities = 105/129 (81%), Positives = 117/129 (90%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQ+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQ++VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTL 248
Query: 35 PFFPFHNRL 9
PFF FH+RL
Sbjct: 249 PFFTFHDRL 257
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 221 bits (562), Expect = 3e-56
Identities = 105/129 (81%), Positives = 115/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIHS
Sbjct: 123 IVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHS 182
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TL
Sbjct: 183 YGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTL 242
Query: 35 PFFPFHNRL 9
P FH+RL
Sbjct: 243 PPLTFHDRL 251
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 221 bits (562), Expect = 3e-56
Identities = 105/129 (81%), Positives = 115/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TL
Sbjct: 189 YGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTL 248
Query: 35 PFFPFHNRL 9
P FH+RL
Sbjct: 249 PPLTFHDRL 257
[21][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 218 bits (556), Expect = 1e-55
Identities = 103/128 (80%), Positives = 113/128 (88%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+DNTQHIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSY 189
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE LE+NQ+ VTLP
Sbjct: 190 ANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLP 249
Query: 32 FFPFHNRL 9
FF FH+RL
Sbjct: 250 FFTFHDRL 257
[22][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 218 bits (554), Expect = 2e-55
Identities = 103/129 (79%), Positives = 115/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+HS
Sbjct: 129 IIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+LE NQH++TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITL 248
Query: 35 PFFPFHNRL 9
P F FH+RL
Sbjct: 249 PLFAFHDRL 257
[23][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 217 bits (553), Expect = 3e-55
Identities = 103/129 (79%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+HS
Sbjct: 129 IIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+LE NQH++TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITL 248
Query: 35 PFFPFHNRL 9
P F FH+RL
Sbjct: 249 PLFAFHDRL 257
[24][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 216 bits (549), Expect = 8e-55
Identities = 101/129 (78%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIHS
Sbjct: 129 IVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTL 248
Query: 35 PFFPFHNRL 9
P F FH+ L
Sbjct: 249 PLFTFHDIL 257
[25][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 216 bits (549), Expect = 8e-55
Identities = 102/130 (78%), Positives = 113/130 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+ LENNQ +VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTL 248
Query: 35 PFFPFHNRLV 6
P F FH+R V
Sbjct: 249 PLFTFHDRFV 258
[26][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 216 bits (549), Expect = 8e-55
Identities = 101/129 (78%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIHS
Sbjct: 129 IVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTL 248
Query: 35 PFFPFHNRL 9
P F FH+ L
Sbjct: 249 PLFTFHDIL 257
[27][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 216 bits (549), Expect = 8e-55
Identities = 101/129 (78%), Positives = 115/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 SPFTFHDKL 257
[28][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 215 bits (548), Expect = 1e-54
Identities = 101/129 (78%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 SPFTFHDKL 257
[29][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 215 bits (547), Expect = 1e-54
Identities = 104/130 (80%), Positives = 114/130 (87%), Gaps = 1/130 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIH 219
I+DNTQHIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHSIH
Sbjct: 129 IVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIH 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE +L +NQH V
Sbjct: 189 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVP 248
Query: 38 LPFFPFHNRL 9
LP F FH +L
Sbjct: 249 LPPFTFHEKL 258
[30][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 215 bits (547), Expect = 1e-54
Identities = 104/131 (79%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH
Sbjct: 131 IVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHC 190
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE +LENNQH VTL
Sbjct: 191 YGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTL 250
Query: 35 P-FFPFHNRLV 6
FFPFH RLV
Sbjct: 251 HFFFPFHYRLV 261
[31][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 214 bits (545), Expect = 2e-54
Identities = 102/130 (78%), Positives = 113/130 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTL 248
Query: 35 PFFPFHNRLV 6
P F FH+RL+
Sbjct: 249 PLFTFHDRLL 258
[32][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 214 bits (545), Expect = 2e-54
Identities = 100/129 (77%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 SPFTFHDKL 257
[33][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 214 bits (545), Expect = 2e-54
Identities = 100/129 (77%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 SPFTFHDKL 257
[34][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 214 bits (544), Expect = 3e-54
Identities = 102/129 (79%), Positives = 116/129 (89%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+ LE+NQ +VTL
Sbjct: 189 YGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTL 248
Query: 35 PFFPFHNRL 9
PFF FH+ L
Sbjct: 249 PFFTFHDGL 257
[35][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 213 bits (542), Expect = 5e-54
Identities = 101/129 (78%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFMPV NANHSIHS
Sbjct: 129 IIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F L++NQ++V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVAL 248
Query: 35 PFFPFHNRL 9
P F FH+RL
Sbjct: 249 PLFTFHDRL 257
[36][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 212 bits (539), Expect = 1e-53
Identities = 100/129 (77%), Positives = 111/129 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L NN++ VT
Sbjct: 189 YGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTF 248
Query: 35 PFFPFHNRL 9
P F FH +L
Sbjct: 249 PLFTFHKKL 257
[37][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 212 bits (539), Expect = 1e-53
Identities = 99/129 (76%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 SPFTFHDKL 257
[38][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 212 bits (539), Expect = 1e-53
Identities = 101/130 (77%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIH 219
++DNTQHIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVFMPV NANHSIH
Sbjct: 129 VVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIH 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L NNQH V
Sbjct: 189 SYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVP 248
Query: 38 LPFFPFHNRL 9
LP F FH++L
Sbjct: 249 LPPFTFHDKL 258
[39][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 211 bits (538), Expect = 2e-53
Identities = 100/129 (77%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+NQ++VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTL 248
Query: 35 PFFPFHNRL 9
PFF FH+ L
Sbjct: 249 PFFTFHDGL 257
[40][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 211 bits (538), Expect = 2e-53
Identities = 100/131 (76%), Positives = 114/131 (87%), Gaps = 2/131 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FMPV N NHSIHS
Sbjct: 129 IVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNQHQV 42
Y NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F+L+NN+ +V
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKV 248
Query: 41 TLPFFPFHNRL 9
TLP F FH +L
Sbjct: 249 TLPLFTFHEKL 259
[41][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 211 bits (537), Expect = 2e-53
Identities = 101/129 (78%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 103 IVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHS 162
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE LE+NQH V L
Sbjct: 163 YGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPL 222
Query: 35 PFFPFHNRL 9
FH++L
Sbjct: 223 SPLTFHDKL 231
[42][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 211 bits (537), Expect = 2e-53
Identities = 100/129 (77%), Positives = 114/129 (88%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FMPV N NHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE LE+NQH+V+L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NLEDNQHKVSL 247
Query: 35 PFFPFHNRL 9
P F FHNRL
Sbjct: 248 PLFTFHNRL 256
[43][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 211 bits (537), Expect = 2e-53
Identities = 99/131 (75%), Positives = 114/131 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+N ++ T+
Sbjct: 189 YGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTV 248
Query: 35 PFFPFHNRLVN 3
P F FH+RL N
Sbjct: 249 PLFTFHDRLAN 259
[44][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 211 bits (536), Expect = 3e-53
Identities = 99/130 (76%), Positives = 114/130 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFMPV N NHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+LE+NQ +VTL
Sbjct: 189 YSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTL 248
Query: 35 PFFPFHNRLV 6
P F FH+RL+
Sbjct: 249 PLFLFHDRLI 258
[45][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 210 bits (535), Expect = 3e-53
Identities = 102/129 (79%), Positives = 111/129 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE +LENNQH+ TL
Sbjct: 189 YVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTL 245
Query: 35 PFFPFHNRL 9
P F FH RL
Sbjct: 246 PLFNFHGRL 254
[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 210 bits (535), Expect = 3e-53
Identities = 100/129 (77%), Positives = 113/129 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFMP+ NAN+SIHS
Sbjct: 129 IVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+ +LENNQH V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPL 248
Query: 35 PFFPFHNRL 9
F FH++L
Sbjct: 249 APFFFHDKL 257
[47][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 209 bits (533), Expect = 6e-53
Identities = 99/129 (76%), Positives = 110/129 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L N++ VT
Sbjct: 189 YGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTF 248
Query: 35 PFFPFHNRL 9
P F FH +L
Sbjct: 249 PLFTFHKKL 257
[48][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 209 bits (533), Expect = 6e-53
Identities = 99/129 (76%), Positives = 112/129 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ +H + L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPL 248
Query: 35 PFFPFHNRL 9
FH+++
Sbjct: 249 SPLSFHDKV 257
[49][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 208 bits (529), Expect = 2e-52
Identities = 98/127 (77%), Positives = 110/127 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+IDNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIHS
Sbjct: 128 VIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHS 187
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH++TL
Sbjct: 188 YVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTL 247
Query: 35 PFFPFHN 15
P F FH+
Sbjct: 248 PLFTFHD 254
[50][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 208 bits (529), Expect = 2e-52
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFMPV NANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+ LE++++ T+
Sbjct: 189 YGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTV 248
Query: 35 PFFPFHNRLVN 3
P F FHN L N
Sbjct: 249 PLFTFHNELAN 259
[51][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 207 bits (527), Expect = 3e-52
Identities = 97/131 (74%), Positives = 112/131 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N + T+
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATV 248
Query: 35 PFFPFHNRLVN 3
PFF FH+ L N
Sbjct: 249 PFFTFHDGLDN 259
[52][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 207 bits (527), Expect = 3e-52
Identities = 102/133 (76%), Positives = 115/133 (86%), Gaps = 4/133 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE--DRSYPIDAVFMPVENANHSI 222
IIDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF+ D SY IDAVFMPV NANHS+
Sbjct: 129 IIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSV 188
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL--ENNQH 48
HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE +L E NQH
Sbjct: 189 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQH 248
Query: 47 QVTLPFFPFHNRL 9
+VTLP F FH++L
Sbjct: 249 KVTLPLFCFHDKL 261
[53][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 207 bits (527), Expect = 3e-52
Identities = 97/131 (74%), Positives = 113/131 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LE+N ++ +
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNI 248
Query: 35 PFFPFHNRLVN 3
PFF FH+ L N
Sbjct: 249 PFFTFHDGLAN 259
[54][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 206 bits (524), Expect = 6e-52
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++ L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPL 248
Query: 35 PFFPFHNRLVN 3
P F F NRL N
Sbjct: 249 PLFTFQNRLTN 259
[55][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 206 bits (524), Expect = 6e-52
Identities = 100/130 (76%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-YPIDAVFMPVENANHSIH 219
I+DNTQHIA+LTEPIDL I L+IER+RGY++K N F+D + YPIDAVFMPV NANHSI
Sbjct: 129 IVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQ 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E LENNQ++VT
Sbjct: 189 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVT 248
Query: 38 LPFFPFHNRL 9
LPFF FH+RL
Sbjct: 249 LPFFTFHDRL 258
[56][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 205 bits (522), Expect = 1e-51
Identities = 97/131 (74%), Positives = 114/131 (87%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV NANHSI+S
Sbjct: 129 IVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE N+ + TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTL 248
Query: 35 PFFPFHNRLVN 3
P F FH++LVN
Sbjct: 249 PLFTFHDKLVN 259
[57][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 205 bits (521), Expect = 1e-51
Identities = 97/130 (74%), Positives = 110/130 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DN QHIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIHS
Sbjct: 129 IVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+LE NQH+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTL 248
Query: 35 PFFPFHNRLV 6
P F FH+ LV
Sbjct: 249 PLFTFHDILV 258
[58][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 205 bits (521), Expect = 1e-51
Identities = 95/131 (72%), Positives = 113/131 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQ+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+ +E+NQ++ T
Sbjct: 189 YGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATA 248
Query: 35 PFFPFHNRLVN 3
P F FH+ L N
Sbjct: 249 PLFTFHDGLTN 259
[59][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 203 bits (517), Expect = 4e-51
Identities = 98/128 (76%), Positives = 110/128 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET LE+N H V L
Sbjct: 189 YGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPL 248
Query: 35 PFFPFHNR 12
FH++
Sbjct: 249 SPLTFHDK 256
[60][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 202 bits (513), Expect = 1e-50
Identities = 96/130 (73%), Positives = 110/130 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DN QHIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIHS
Sbjct: 129 IVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F LE +H+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTL 248
Query: 35 PFFPFHNRLV 6
P F FH+ LV
Sbjct: 249 PLFTFHDILV 258
[61][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 95/131 (72%), Positives = 111/131 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHS
Sbjct: 129 VVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++ T+
Sbjct: 189 YGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTV 248
Query: 35 PFFPFHNRLVN 3
P F F +RL N
Sbjct: 249 PPFTFPDRLAN 259
[62][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 95/131 (72%), Positives = 111/131 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHS
Sbjct: 129 VVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++ T+
Sbjct: 189 YGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTV 248
Query: 35 PFFPFHNRLVN 3
P F F +RL N
Sbjct: 249 PPFTFPDRLAN 259
[63][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 201 bits (510), Expect = 3e-50
Identities = 98/132 (74%), Positives = 114/132 (86%), Gaps = 3/132 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIH 219
++DNTQHIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVFMP+ NANHSIH
Sbjct: 129 VVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIH 188
Query: 218 SYGNGN--EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
SYGNGN +KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L +NQH
Sbjct: 189 SYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHM 248
Query: 44 VTLPFFPFHNRL 9
V LP F FH+ L
Sbjct: 249 VPLPPFTFHDNL 260
[64][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 201 bits (510), Expect = 3e-50
Identities = 97/133 (72%), Positives = 115/133 (86%), Gaps = 2/133 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQV 42
YG+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ + LE+NQ++
Sbjct: 189 YGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRF 248
Query: 41 TLPFFPFHNRLVN 3
T+ F H+RL N
Sbjct: 249 TVSPFTLHDRLGN 261
[65][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 200 bits (509), Expect = 4e-50
Identities = 96/131 (73%), Positives = 110/131 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV MPV NANHSIHS
Sbjct: 127 IVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHS 186
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE + E N+++ TL
Sbjct: 187 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTL 246
Query: 35 PFFPFHNRLVN 3
P F F NRL N
Sbjct: 247 PLFTFQNRLTN 257
[66][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 200 bits (508), Expect = 5e-50
Identities = 95/129 (73%), Positives = 108/129 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHSIHS
Sbjct: 129 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN+H+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTL 248
Query: 35 PFFPFHNRL 9
P F H+ L
Sbjct: 249 PLFTCHDLL 257
[67][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 199 bits (507), Expect = 6e-50
Identities = 96/131 (73%), Positives = 111/131 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++ TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTL 248
Query: 35 PFFPFHNRLVN 3
PF F +RL N
Sbjct: 249 PFLTFQDRLTN 259
[68][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 199 bits (506), Expect = 8e-50
Identities = 98/132 (74%), Positives = 112/132 (84%), Gaps = 2/132 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFMPVENANHSI 222
I+DNTQHIA LTEPI+LCIEL+IER RGY K +N +D SY ID VFMPV +AN+SI
Sbjct: 129 IVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSI 188
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
HSY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F+ ENNQH+V
Sbjct: 189 HSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKV 248
Query: 41 TLPFFPFHNRLV 6
TLP F FH+RLV
Sbjct: 249 TLPLFAFHDRLV 260
[69][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 198 bits (504), Expect = 1e-49
Identities = 95/131 (72%), Positives = 110/131 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQ+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTL 248
Query: 35 PFFPFHNRLVN 3
P F +RL N
Sbjct: 249 PPLTFQDRLSN 259
[70][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 197 bits (502), Expect = 2e-49
Identities = 98/129 (75%), Positives = 108/129 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA L EPIDLCI L+IERNRGY+ SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFMPVRNANHSIHS 179
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TL
Sbjct: 180 YGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTL 239
Query: 35 PFFPFHNRL 9
P FH+RL
Sbjct: 240 PPLTFHDRL 248
[71][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 197 bits (500), Expect = 4e-49
Identities = 95/124 (76%), Positives = 107/124 (86%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IIDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV N NHSI+S
Sbjct: 129 IIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE LE+NQH L
Sbjct: 189 YGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQHM--L 246
Query: 35 PFFP 24
PF P
Sbjct: 247 PFRP 250
[72][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 197 bits (500), Expect = 4e-49
Identities = 92/127 (72%), Positives = 109/127 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FMPV NANHS+HS
Sbjct: 129 IVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +LE+N + V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPL 248
Query: 35 PFFPFHN 15
F FH+
Sbjct: 249 ALFTFHD 255
[73][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 197 bits (500), Expect = 4e-49
Identities = 95/133 (71%), Positives = 110/133 (82%), Gaps = 2/133 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF--YLENNQHQV 42
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N +
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRA 248
Query: 41 TLPFFPFHNRLVN 3
++PFF F + L N
Sbjct: 249 SVPFFAFDDGLDN 261
[74][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 196 bits (499), Expect = 5e-49
Identities = 95/128 (74%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ-HQVT 39
YGNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ L++NQ + VT
Sbjct: 189 YGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVT 248
Query: 38 LPFFPFHN 15
LPFF FH+
Sbjct: 249 LPFFTFHD 256
[75][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/131 (71%), Positives = 108/131 (82%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV MPV NANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE + N+++ TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTL 248
Query: 35 PFFPFHNRLVN 3
P F F +RL N
Sbjct: 249 PIFTFQDRLTN 259
[76][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 196 bits (497), Expect = 9e-49
Identities = 96/129 (74%), Positives = 110/129 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H ++L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISL 246
Query: 35 PFFPFHNRL 9
F ++++
Sbjct: 247 SPFTVYDKV 255
[77][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 195 bits (496), Expect = 1e-48
Identities = 96/133 (72%), Positives = 112/133 (84%), Gaps = 2/133 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI--DAVFMPVENANHSI 222
++D TQHIA+LTEPIDLCI L+IER+RGY +K NN +D SYPI +AV MPV NANHSI
Sbjct: 129 MVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSI 188
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
HSYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE LE++ ++
Sbjct: 189 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRG 248
Query: 41 TLPFFPFHNRLVN 3
TLPFF F ++L N
Sbjct: 249 TLPFFTFQDKLAN 261
[78][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 193 bits (490), Expect = 6e-48
Identities = 97/125 (77%), Positives = 107/125 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TI 244
Query: 35 PFFPF 21
P PF
Sbjct: 245 PLSPF 249
[79][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 193 bits (490), Expect = 6e-48
Identities = 97/125 (77%), Positives = 107/125 (85%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TI 244
Query: 35 PFFPF 21
P PF
Sbjct: 245 PLSPF 249
[80][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 192 bits (487), Expect = 1e-47
Identities = 93/129 (72%), Positives = 108/129 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH + L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPL 246
Query: 35 PFFPFHNRL 9
P F F+++L
Sbjct: 247 PPFTFYDKL 255
[81][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 191 bits (484), Expect = 3e-47
Identities = 95/127 (74%), Positives = 104/127 (81%)
Frame = -3
Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
DNTQHIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFMPV N NHSIHSYG
Sbjct: 116 DNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSYG 175
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPF 30
N EKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LENNQ V+
Sbjct: 176 N--EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSFSP 233
Query: 29 FPFHNRL 9
F FH +L
Sbjct: 234 FSFHEKL 240
[82][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 191 bits (484), Expect = 3e-47
Identities = 95/125 (76%), Positives = 106/125 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
++D+TQHIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 VVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E +LE+ T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADR--TI 244
Query: 35 PFFPF 21
P PF
Sbjct: 245 PLSPF 249
[83][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 189 bits (481), Expect = 6e-47
Identities = 93/129 (72%), Positives = 108/129 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPL 246
Query: 35 PFFPFHNRL 9
P F F+++L
Sbjct: 247 PPFTFYDKL 255
[84][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 189 bits (481), Expect = 6e-47
Identities = 93/129 (72%), Positives = 108/129 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPL 246
Query: 35 PFFPFHNRL 9
P F F+++L
Sbjct: 247 PPFTFYDKL 255
[85][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 189 bits (479), Expect = 1e-46
Identities = 89/131 (67%), Positives = 107/131 (81%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V MPV NANHSIHS
Sbjct: 129 IVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE + N+++ L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNL 248
Query: 35 PFFPFHNRLVN 3
P F F ++ N
Sbjct: 249 PPFSFQDKFTN 259
[86][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 187 bits (476), Expect = 2e-46
Identities = 92/129 (71%), Positives = 107/129 (82%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHS
Sbjct: 129 ILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGN +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE LE NQH V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPL 246
Query: 35 PFFPFHNRL 9
P F F+++L
Sbjct: 247 PPFTFYDKL 255
[87][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 184 bits (467), Expect = 3e-45
Identities = 89/129 (68%), Positives = 106/129 (82%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV MPV NAN+SI
Sbjct: 129 IVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYSIQC 186
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L+++Q+ T
Sbjct: 187 YGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTA 246
Query: 35 PFFPFHNRL 9
PFFPFH L
Sbjct: 247 PFFPFHEGL 255
[88][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 182 bits (462), Expect = 1e-44
Identities = 92/125 (73%), Positives = 104/125 (83%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+TQHIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FMPV NANHSI+S
Sbjct: 129 IVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN EKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H T+
Sbjct: 189 YGN--EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADH--TI 244
Query: 35 PFFPF 21
P PF
Sbjct: 245 PLSPF 249
[89][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 182 bits (461), Expect = 1e-44
Identities = 89/131 (67%), Positives = 103/131 (78%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQHIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV MPV N N+SI+S
Sbjct: 129 IVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++ TL
Sbjct: 189 CGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTL 248
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 249 PLLTFQKRLTN 259
[90][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 179 bits (455), Expect = 6e-44
Identities = 86/131 (65%), Positives = 103/131 (78%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 134 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 193
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 194 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 253
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 254 PLFTFQKRLTN 264
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 179 bits (455), Expect = 6e-44
Identities = 86/131 (65%), Positives = 103/131 (78%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[92][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 179 bits (454), Expect = 8e-44
Identities = 88/129 (68%), Positives = 105/129 (81%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXL 246
Query: 35 PFFPFHNRL 9
P F+N++
Sbjct: 247 PPLIFYNKV 255
[93][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 179 bits (454), Expect = 8e-44
Identities = 88/129 (68%), Positives = 105/129 (81%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPL 246
Query: 35 PFFPFHNRL 9
P F+N++
Sbjct: 247 PPLIFYNKV 255
[94][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 179 bits (454), Expect = 8e-44
Identities = 88/129 (68%), Positives = 104/129 (80%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE YL + +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIPL 246
Query: 35 PFFPFHNRL 9
F+N++
Sbjct: 247 SSLIFYNKV 255
[95][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 179 bits (454), Expect = 8e-44
Identities = 86/131 (65%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[96][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 179 bits (453), Expect = 1e-43
Identities = 87/122 (71%), Positives = 102/122 (83%), Gaps = 3/122 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IH+Y NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE +LENNQ+Q
Sbjct: 189 IHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQ 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[97][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 178 bits (452), Expect = 1e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[98][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[99][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[100][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[101][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[102][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[103][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[104][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[105][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[106][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[107][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[108][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[109][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[110][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[111][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[112][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[113][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[114][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[115][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[116][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[117][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFKKRLTN 259
[118][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFKKRLTN 259
[119][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 177 bits (449), Expect = 3e-43
Identities = 89/122 (72%), Positives = 101/122 (82%), Gaps = 3/122 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDAVF+PV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE F+ ENNQ++
Sbjct: 189 IHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[120][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 177 bits (449), Expect = 3e-43
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
++D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 VVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[121][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 176 bits (447), Expect = 5e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PPFTFQKRLTN 259
[122][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 176 bits (447), Expect = 5e-43
Identities = 84/130 (64%), Positives = 101/130 (77%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSC 189
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T P
Sbjct: 190 GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249
Query: 32 FFPFHNRLVN 3
F F RL N
Sbjct: 250 LFTFQKRLTN 259
[123][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 85/131 (64%), Positives = 102/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PPFTFKKRLTN 259
[124][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 176 bits (445), Expect = 9e-43
Identities = 84/131 (64%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQ IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248
Query: 35 PFFPFHNRLVN 3
P F R N
Sbjct: 249 PLLTFQKRFTN 259
[125][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 176 bits (445), Expect = 9e-43
Identities = 84/131 (64%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[126][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 176 bits (445), Expect = 9e-43
Identities = 84/131 (64%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[127][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 175 bits (444), Expect = 1e-42
Identities = 83/131 (63%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQ IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248
Query: 35 PFFPFHNRLVN 3
P F R N
Sbjct: 249 PLLTFQKRFTN 259
[128][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 174 bits (442), Expect = 2e-42
Identities = 84/131 (64%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[129][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 174 bits (442), Expect = 2e-42
Identities = 85/131 (64%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 249 PLLTFQKRLTN 259
[130][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 83/131 (63%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D TQ IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTP 248
Query: 35 PFFPFHNRLVN 3
P F R N
Sbjct: 249 PLLTFQKRFTN 259
[131][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 85/125 (68%), Positives = 105/125 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+TQHIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFMPV N NHSI+S
Sbjct: 129 IVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGN EK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE LE+ +HQ+
Sbjct: 189 YGN--EKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI-- 244
Query: 35 PFFPF 21
PF PF
Sbjct: 245 PFSPF 249
[132][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 83/131 (63%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V MPV N N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F F RL N
Sbjct: 249 PLFTFQKRLTN 259
[133][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 83/131 (63%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M V N N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 249 PLLTFQKRLTN 259
[134][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 172 bits (436), Expect = 1e-41
Identities = 83/120 (69%), Positives = 100/120 (83%), Gaps = 3/120 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE + ENNQ++
Sbjct: 189 IHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[135][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 172 bits (435), Expect = 1e-41
Identities = 82/131 (62%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E +++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTP 248
Query: 35 PFFPFHNRLVN 3
P F R N
Sbjct: 249 PLLTFQKRFTN 259
[136][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 170 bits (431), Expect = 4e-41
Identities = 83/131 (63%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 129 IVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFY 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 35 PFFPFHNRLVN 3
P F +L N
Sbjct: 249 PLLTFQKKLTN 259
[137][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 169 bits (428), Expect = 9e-41
Identities = 91/126 (72%), Positives = 101/126 (80%), Gaps = 7/126 (5%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFE-DRSYPI--DAVFMPVENA 234
I+DNTQHI TLTEPID C+ELKIER RGYS+K+ +N F D YPI DAVFMPV N
Sbjct: 129 IVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNV 188
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY-LEN 57
NHSI+SY G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE FY LEN
Sbjct: 189 NHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLEN 246
Query: 56 NQHQVT 39
NQ+Q T
Sbjct: 247 NQNQHT 252
[138][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 168 bits (426), Expect = 1e-40
Identities = 84/122 (68%), Positives = 97/122 (79%), Gaps = 3/122 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE+ + ENNQ++
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[139][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 167 bits (424), Expect = 3e-40
Identities = 81/122 (66%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+VFMPV+N NHS
Sbjct: 129 IVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+ F+ ENNQ++
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[140][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 166 bits (421), Expect = 6e-40
Identities = 86/124 (69%), Positives = 97/124 (78%), Gaps = 5/124 (4%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAVFMPVENANH 228
I+DNTQHI TLTEPID C+ LKIER RGYS+K+ + D +YPIDAVFMPV N NH
Sbjct: 129 IVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNH 188
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL-ENNQ 51
SIHSY G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE FYL ENNQ
Sbjct: 189 SIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQ 246
Query: 50 HQVT 39
+Q T
Sbjct: 247 NQDT 250
[141][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 166 bits (421), Expect = 6e-40
Identities = 86/129 (66%), Positives = 101/129 (78%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA+LTEPI+L I L+IE+NR LK N F+D SY I AV MPV + N+SIHS
Sbjct: 129 IVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNG KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE LENNQ ++
Sbjct: 189 SGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LENNQDRIPF 244
Query: 35 PFFPFHNRL 9
P F F+++L
Sbjct: 245 PSFTFYDKL 253
[142][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 166 bits (420), Expect = 7e-40
Identities = 82/131 (62%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + NQ++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[143][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 164 bits (416), Expect = 2e-39
Identities = 81/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[144][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 164 bits (416), Expect = 2e-39
Identities = 81/131 (61%), Positives = 98/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[145][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 164 bits (414), Expect = 4e-39
Identities = 81/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[146][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 163 bits (413), Expect = 5e-39
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 217 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 276
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 277 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 336
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 337 PLLSFQKRLTN 347
[147][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 163 bits (413), Expect = 5e-39
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 249 PLLSFQKRLTN 259
[148][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 163 bits (413), Expect = 5e-39
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 358 PLLSFQKRLTN 368
[149][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 163 bits (413), Expect = 5e-39
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[150][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 163 bits (413), Expect = 5e-39
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 249 PLLSFQKRLTN 259
[151][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 162 bits (410), Expect = 1e-38
Identities = 79/131 (60%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 298 CGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 358 PLLSFQKRLTN 368
[152][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 162 bits (409), Expect = 1e-38
Identities = 79/131 (60%), Positives = 101/131 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNM 248
Query: 35 PFFPFHNRLVN 3
P FP + L +
Sbjct: 249 PPFPLSHVLTD 259
[153][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 161 bits (408), Expect = 2e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[154][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 161 bits (407), Expect = 2e-38
Identities = 79/131 (60%), Positives = 96/131 (73%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 35 PFFPFHNRLVN 3
P F RL N
Sbjct: 229 PLLSFQKRLTN 239
[155][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 160 bits (406), Expect = 3e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[156][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 160 bits (406), Expect = 3e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[157][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 160 bits (406), Expect = 3e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[158][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 160 bits (406), Expect = 3e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[159][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 160 bits (406), Expect = 3e-38
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[160][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 160 bits (406), Expect = 3e-38
Identities = 79/127 (62%), Positives = 98/127 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA+LT+ I I L IE++RGY ++ N++D +PIDAVFMPV NAN+SIHS
Sbjct: 129 IIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+ +NQ+ +
Sbjct: 189 YGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNM 248
Query: 35 PFFPFHN 15
P F F N
Sbjct: 249 PSFSFSN 255
[161][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNM 248
Query: 35 PFFPFHNRLVN 3
P FP + L +
Sbjct: 249 PPFPLSHVLTD 259
[162][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV + N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[163][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[164][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[165][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[166][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[167][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[168][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[169][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[170][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[171][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHLLTD 259
[172][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 157 bits (397), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[173][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 157 bits (397), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[174][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 157 bits (397), Expect = 3e-37
Identities = 78/131 (59%), Positives = 99/131 (75%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[175][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 156 bits (395), Expect = 6e-37
Identities = 76/125 (60%), Positives = 96/125 (76%), Gaps = 1/125 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVT 39
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+ + N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSSN 248
Query: 38 LPFFP 24
+P FP
Sbjct: 249 MPPFP 253
[176][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 156 bits (394), Expect = 8e-37
Identities = 78/131 (59%), Positives = 97/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSNM 248
Query: 35 PFFPFHNRLVN 3
P FP + L +
Sbjct: 249 PPFPLSHVLTD 259
[177][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 155 bits (393), Expect = 1e-36
Identities = 77/130 (59%), Positives = 98/130 (75%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
ID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSY
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSY 189
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
G+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 190 GSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNML 249
Query: 32 FFPFHNRLVN 3
FP + L +
Sbjct: 250 PFPLSHVLTD 259
[178][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 155 bits (393), Expect = 1e-36
Identities = 77/131 (58%), Positives = 98/131 (74%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV + N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 35 PFFPFHNRLVN 3
FP + L +
Sbjct: 249 LPFPLSHVLTD 259
[179][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 155 bits (393), Expect = 1e-36
Identities = 76/125 (60%), Positives = 96/125 (76%), Gaps = 1/125 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVT 39
YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ + N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSSN 248
Query: 38 LPFFP 24
+P FP
Sbjct: 249 MPPFP 253
[180][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 150 bits (379), Expect = 4e-35
Identities = 73/107 (68%), Positives = 86/107 (80%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 150 bits (378), Expect = 5e-35
Identities = 73/124 (58%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQ+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFMP+ N N+S+HS
Sbjct: 129 IIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVT 39
+ NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y N ++
Sbjct: 189 FENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYESN 248
Query: 38 LPFF 27
+ +F
Sbjct: 249 MSYF 252
[182][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 142 bits (357), Expect = 1e-32
Identities = 70/125 (56%), Positives = 95/125 (76%), Gaps = 2/125 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQ+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+HS
Sbjct: 129 IIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQV 42
+ + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++ LEN
Sbjct: 189 FEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYESN 248
Query: 41 TLPFF 27
+ +F
Sbjct: 249 NMSYF 253
[183][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 142 bits (357), Expect = 1e-32
Identities = 67/107 (62%), Positives = 90/107 (84%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQ+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+HS
Sbjct: 129 IIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 189 FENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[184][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 142 bits (357), Expect = 1e-32
Identities = 72/125 (57%), Positives = 88/125 (70%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA+L E I I +I ++RGY ++ NN D + DAV MPV NAN+SIHS
Sbjct: 129 IIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+ +N + +
Sbjct: 189 YGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNGYNM 248
Query: 35 PFFPF 21
FPF
Sbjct: 249 SLFPF 253
[185][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 140 bits (354), Expect = 3e-32
Identities = 71/130 (54%), Positives = 95/130 (73%), Gaps = 1/130 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+HS
Sbjct: 132 VIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHS 191
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQVT 39
+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE + +N + +
Sbjct: 192 FENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTLH 251
Query: 38 LPFFPFHNRL 9
P N++
Sbjct: 252 FSSSPSENKM 261
[186][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 139 bits (350), Expect = 1e-31
Identities = 72/124 (58%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+HS
Sbjct: 132 VIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHS 191
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQV 42
+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E L N
Sbjct: 192 FENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNESN 251
Query: 41 TLPF 30
TL F
Sbjct: 252 TLHF 255
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 139 bits (350), Expect = 1e-31
Identities = 64/114 (56%), Positives = 91/114 (79%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
ID++QHIAT+T+ I L IE++I+++RGY ++ S + + IDAVFMP+ AN+S+HS+
Sbjct: 130 IDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSF 189
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
GN + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE + ++
Sbjct: 190 GNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[188][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 137 bits (346), Expect = 3e-31
Identities = 65/107 (60%), Positives = 88/107 (82%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQ+IAT+T+PI L IEL+I+++ GY + S D + IDA+FMP+ NAN+S+HS
Sbjct: 129 IIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 189 FENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 136 bits (343), Expect = 6e-31
Identities = 67/125 (53%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID Q+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FMP+ NAN+S+HS
Sbjct: 129 IIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQV 42
+ N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E LEN
Sbjct: 189 FENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLS 248
Query: 41 TLPFF 27
+ +F
Sbjct: 249 NISYF 253
[190][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 132 bits (332), Expect = 1e-29
Identities = 60/103 (58%), Positives = 85/103 (82%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+IDNTQ++AT+T I L IEL IE++RGY ++ S + + +PIDAVFMP+ NAN+S+HS
Sbjct: 130 VIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHS 189
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
+G+ + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 190 FGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[191][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 132 bits (331), Expect = 2e-29
Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----------YPIDAVFMP 246
IID TQHIA + + I L I L+IE+ RGY ++ NN+ + +PIDA F P
Sbjct: 129 IIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAP 188
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PFL+ +EE
Sbjct: 189 VQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEENSD 248
Query: 65 LENNQHQVTLPFFP 24
N+ P P
Sbjct: 249 GTNSLSDDITPSLP 262
[192][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 130 bits (328), Expect = 3e-29
Identities = 59/107 (55%), Positives = 84/107 (78%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ID TQHIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F P+ NAN+S+HS
Sbjct: 129 VIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 189 FENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 129 bits (323), Expect = 1e-28
Identities = 56/107 (52%), Positives = 82/107 (76%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ID++Q+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFMPV N N+S+H
Sbjct: 129 VIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHP 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 189 FGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[194][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 128 bits (322), Expect = 2e-28
Identities = 58/107 (54%), Positives = 83/107 (77%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID++Q+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV MPV N N+S+H
Sbjct: 129 IIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHP 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 189 FGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[195][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 127 bits (320), Expect = 3e-28
Identities = 63/124 (50%), Positives = 94/124 (75%), Gaps = 2/124 (1%)
Frame = -3
Query: 380 QHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGN 201
Q+IATL + I L IEL IE++RGY ++ +++ +P+DAVFMP+ NAN+S+HS+ +
Sbjct: 134 QYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEK 193
Query: 200 EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQHQVTLPFF 27
+ +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+ F +E ++ + +F
Sbjct: 194 KIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKT-NESNMSYF 252
Query: 26 PFHN 15
PF +
Sbjct: 253 PFQS 256
[196][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 124 bits (311), Expect = 3e-27
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NANH+IH YGN NE+
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNER 124
Query: 194 QEILFLEIWTNGSLTPKEALHQAS 123
QEILFL++WTN +LTPKEA H+AS
Sbjct: 125 QEILFLKLWTNKNLTPKEAFHEAS 148
[197][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 122 bits (307), Expect = 9e-27
Identities = 63/124 (50%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
IDN+Q+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFMPV N N+SIH +
Sbjct: 131 IDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLF 190
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQVTL 36
G+G QEILF+EIWTNGSLTP EAL +AS L++L FL+V + EN + + L
Sbjct: 191 GSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDL 250
Query: 35 PFFP 24
P
Sbjct: 251 TKSP 254
[198][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 122 bits (305), Expect = 2e-26
Identities = 62/124 (50%), Positives = 87/124 (70%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID +QHIAT+T I L +EL+IER+ GY + + IDA+F P+ NAN+SIHS
Sbjct: 129 IIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
+ + N+ +EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E E +++ +
Sbjct: 189 FESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELNI 248
Query: 35 PFFP 24
FP
Sbjct: 249 KNFP 252
[199][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 118 bits (295), Expect = 2e-25
Identities = 59/108 (54%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ D TQHIA LT+ + L IEL +E+ GY + D + ID+VFMPV NAN+S+HS
Sbjct: 241 VTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHS 300
Query: 215 YGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
Y + + QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 301 YESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[200][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 112 bits (281), Expect = 1e-23
Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSI 222
IID TQHIA+LT+ + + L IERN+GY++ + S ++ +PIDA MPV N N SI
Sbjct: 130 IIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSI 189
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
HSY + N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 190 HSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[201][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 110 bits (274), Expect = 6e-23
Identities = 51/109 (46%), Positives = 81/109 (74%), Gaps = 2/109 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+ID QHIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF P+ + N+SIH
Sbjct: 132 VIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHC 191
Query: 215 YGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ + ++ +E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 192 FESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 108 bits (271), Expect = 1e-22
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+D+ Q IA LTEPID +EL IE++ G+ L+ + S+ IDA+FMP+ N N+SIH
Sbjct: 126 ILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHP 185
Query: 215 YGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
G+ K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 186 VEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[203][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 107 bits (267), Expect = 4e-22
Identities = 53/115 (46%), Positives = 80/115 (69%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID+TQHIA+LT+ I + LKIE+ + Y+++ +D +PID V +PV+N N SIHS
Sbjct: 130 IIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHS 189
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
Y + + QE+L EIWTNG LTP+E +++A +L++L IP L VE+ ++N+Q
Sbjct: 190 YKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN---IKNSQ 241
[204][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 107 bits (266), Expect = 5e-22
Identities = 52/103 (50%), Positives = 73/103 (70%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F PV N N SIH N E
Sbjct: 137 HIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAE 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 194 QQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[205][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 98.6 bits (244), Expect = 2e-19
Identities = 43/105 (40%), Positives = 73/105 (69%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I++ Q+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+P+ + N+SIHS
Sbjct: 129 IVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ + +E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 189 FEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[206][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 97.4 bits (241), Expect = 4e-19
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+D TQHIAT+T I I L++ER G+ + ++ S P DAVFMP+ +AN+SIH
Sbjct: 131 MDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRL 190
Query: 212 GN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
G+ G +E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 191 GSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[207][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 95.5 bits (236), Expect = 2e-18
Identities = 41/60 (68%), Positives = 54/60 (90%)
Frame = -3
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMP+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+L +LFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
[208][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 93.6 bits (231), Expect = 6e-18
Identities = 52/131 (39%), Positives = 77/131 (58%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
++DNTQ+IA L P + I + +E + + + + +DA PV N N+SIHS
Sbjct: 126 VVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIHS 185
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
G G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F + N H+ +
Sbjct: 186 LGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKRM 244
Query: 35 PFFPFHNRLVN 3
F P + +N
Sbjct: 245 -FTPTQSENLN 254
[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 90.5 bits (223), Expect = 5e-17
Identities = 45/103 (43%), Positives = 72/103 (69%)
Frame = -3
Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 232 DPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFE 291
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 292 VEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 90.5 bits (223), Expect = 5e-17
Identities = 45/103 (43%), Positives = 72/103 (69%)
Frame = -3
Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 319 DPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFE 378
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 379 VEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[211][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 86.3 bits (212), Expect = 1e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = -3
Query: 365 LTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEI 186
L EPIDL I L+IERN GY +K NF+D SY IDA+FM V NANH++HSYGNGNEK ++
Sbjct: 9 LKEPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[212][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 85.5 bits (210), Expect = 2e-15
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVFMPVENANHS 225
I+D TQHIA++T+PI L + LKIE+N G S+ + R P + +MPV + ++
Sbjct: 133 IVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYN 192
Query: 224 IHSYGNGNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
++ Y + + +IL E+WTNG LTPKEAL++A LI+L IP L V
Sbjct: 193 VYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241
[213][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 84.7 bits (208), Expect = 3e-15
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHS 225
II TQ++AT+ E L +E KIE+ RGY + K + N D PIDA+FMPV N+
Sbjct: 120 IIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPVRKVNYM 178
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ + +E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 179 VEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[214][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 84.0 bits (206), Expect = 5e-15
Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+D Q IATL LCIEL I + L + + + IDA F PV+ AN SIHS
Sbjct: 138 VDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKANFSIHSV 196
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
G+ Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 197 GDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[215][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 82.8 bits (203), Expect = 1e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = -3
Query: 182 FLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVN 3
FLEIWTNGSLTPKEAL++ SRNLI+LF+PF+H EEE E N++++T PF F R N
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLTFQKRFTN 66
[216][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 79.7 bits (195), Expect = 9e-14
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S
Sbjct: 120 VINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ
Sbjct: 180 VESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQL 230
Query: 47 QVTLPFFP 24
+ +P +P
Sbjct: 231 ETAVPEYP 238
[217][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 79.7 bits (195), Expect = 9e-14
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
I+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV N+S
Sbjct: 120 IVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 180 VEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[218][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 79.7 bits (195), Expect = 9e-14
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
I+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV N+S
Sbjct: 120 IVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 180 VEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[219][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 79.7 bits (195), Expect = 9e-14
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S
Sbjct: 120 VINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ
Sbjct: 180 VESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQL 230
Query: 47 QVTLPFFP 24
+ +P +P
Sbjct: 231 ETAVPEYP 238
[220][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 79.3 bits (194), Expect = 1e-13
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID Q+IATL E L +E ++ER GY + E+ S ID+VFMPV N++
Sbjct: 120 VIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYT 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+ +G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 180 VEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[221][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 79.0 bits (193), Expect = 2e-13
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
++D Q+IATL+ L +E ++E+ GY N E + IDAVFMPV N++
Sbjct: 120 VVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYT 179
Query: 224 IHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
+ G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E+
Sbjct: 180 VEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231
[222][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHS 225
++D Q+IAT++ + L +E +E +GY L + F+ PIDAVFMPV N++
Sbjct: 125 LVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYT 184
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 185 VEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[223][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 78.6 bits (192), Expect = 2e-13
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVEN 237
+I+ HIATL E L +E I R RGY S M+ +F ID+VFMPV
Sbjct: 138 VINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDF----LQIDSVFMPVRK 193
Query: 236 ANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V +T
Sbjct: 194 VNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFDT 249
[224][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANH 228
++D Q+IAT++ L +ELK+E++ GY K+ F +S PID++FMPV+ N+
Sbjct: 124 VVDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFMPVKKVNY 181
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ + E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 182 YVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[225][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
++D TQ+IATL + L +E +IE+ + Y N E + IDAVFMPV N+S
Sbjct: 120 VVDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYS 179
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ S + G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 180 VDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[226][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 78.2 bits (191), Expect = 3e-13
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+++ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S
Sbjct: 120 VVNPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 180 VESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[227][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 78.2 bits (191), Expect = 3e-13
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
++D TQ++ATLTE L +E +IE GY + S IDAVFMPV N+
Sbjct: 122 VVDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMPVTKVNYI 181
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ G E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 182 VEDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[228][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 77.8 bits (190), Expect = 3e-13
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID TQ++AT+ E L +E +IE+ +GY E S ID++FMPV N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 224 IH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ S G G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 180 VEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[229][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 77.4 bits (189), Expect = 5e-13
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID TQ++AT+ + L +E +IER +GY E S ID+VFMPV N+S
Sbjct: 120 VIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYS 179
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 180 VEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[230][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 77.4 bits (189), Expect = 5e-13
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID TQ++ATL E L +E +IE+ +GY E S ID+VFMPV N+S
Sbjct: 120 VIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYS 179
Query: 224 IH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ + G + ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 180 VEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[231][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 77.4 bits (189), Expect = 5e-13
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 180 VEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[232][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 77.4 bits (189), Expect = 5e-13
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 180 VEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[233][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 77.0 bits (188), Expect = 6e-13
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
I++ +IAT+T L IE KIE GY L F +S IDA+FMPV+ +
Sbjct: 120 IVNPNHYIATITTSNVLEIEFKIESGTGYKLA-GQTFCKKSQDYLQIDAIFMPVQKVDFK 178
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH--VEEETFYLEN 57
I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L + +ET EN
Sbjct: 179 IENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQETKESEN 237
[234][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 77.0 bits (188), Expect = 6e-13
Identities = 49/123 (39%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHSI 222
+ID Q+IAT+ L +E KIE GY + +N + +D+VFMPV+ N I
Sbjct: 120 LIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVNFRI 179
Query: 221 H-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEETFYLENNQ 51
+ G N E L L+IWTNGS++ KEA+ A+ NLINLF P + E ET Y N
Sbjct: 180 EETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYETNET 239
Query: 50 HQV 42
+
Sbjct: 240 SHI 242
[235][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 76.6 bits (187), Expect = 8e-13
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Frame = -3
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSI 222
+D Q+IATL + L +E +IER +GY E S +DAVFMPV N+S+
Sbjct: 121 VDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSV 180
Query: 221 HSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 181 EDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[236][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 76.6 bits (187), Expect = 8e-13
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
I+D +Q++ATL E L +E +IE+ +GY + S ID+VFMPV N+S
Sbjct: 120 IVDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPVTKVNYS 179
Query: 224 IHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+ +G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 180 VEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[237][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 76.6 bits (187), Expect = 8e-13
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSI 222
I++ +IAT++ I+L +E KIE GY L ++ N+ ID++FMPV+ N I
Sbjct: 120 IVNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFMPVQKVNFKI 179
Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQ 51
+ Y N E L LEIWTNGS+ P EAL +A + +IN F L + +ET +N
Sbjct: 180 ENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNN 239
Query: 50 HQVTL 36
++T+
Sbjct: 240 RKLTI 244
[238][TOP]
>UniRef100_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidioschyzon
merolae RepID=RPOA_CYAME
Length = 316
Score = 76.3 bits (186), Expect = 1e-12
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH- 219
IID Q+IAT+ L +E ++E++ GY L + D PID VFMPV+ N +
Sbjct: 129 IIDTCQYIATIDTQDILEMECQLEQSSGYRLAKPSEMIDW-LPIDGVFMPVKRVNFWVDK 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ + + L LEIWTNGS++P+EALHQA+R L + F P +E +T + +N Q
Sbjct: 188 ALVDKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTLEWKTSHTKNEQTMAQ 247
Query: 38 L 36
L
Sbjct: 248 L 248
[239][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 75.9 bits (185), Expect = 1e-12
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 13/121 (10%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANH 228
+++ +IATL L +E KIE++RGY + +DR +DAVFMPV N+
Sbjct: 123 VVNPNHYIATLMPGATLEMEFKIEKDRGYR-SVERVRDDRLALDYLQLDAVFMPVRRVNY 181
Query: 227 SIHSYGNGNEK-----QEILFLEIWTNGSLTPKEALHQASRNLINLFIPF----LHVEEE 75
++ S + + Q+ L LEIWTNGSLTP++AL+QA+ L++LF P LH E
Sbjct: 182 TVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTSEA 241
Query: 74 T 72
T
Sbjct: 242 T 242
[240][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 75.1 bits (183), Expect = 2e-12
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
++D +Q++ATL++ L +E ++E+ +GY + S ID+VFMPV N+S
Sbjct: 120 VVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNYS 179
Query: 224 IHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+ +G ++ L LEIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 180 VEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[241][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 74.7 bits (182), Expect = 3e-12
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
+I+ +IATL+ L +E KIE+ +GY E S IDA+FMPV N++
Sbjct: 119 VINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNYT 178
Query: 224 IHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ +G +++ L LEIWTNGSLTP+EAL+Q + L++LF P V
Sbjct: 179 VEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226
[242][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 74.3 bits (181), Expect = 4e-12
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHS 225
++D Q+IATL+ +L +E I +GY + + N S P+DA+FMP+ N+
Sbjct: 125 VVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYM 184
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ E + LEIWTNGS++P++AL + +I+LF P H E
Sbjct: 185 VEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[243][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 73.9 bits (180), Expect = 5e-12
Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
I++ TQ++ATL+ L +E +IE+ +GY N E + IDA++MPV N+
Sbjct: 120 IVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYE 179
Query: 224 IHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FLHVEEETFYL 63
+ G +++ L L+IWTNG+LTP+E+L QA+ L++LF P F VE+
Sbjct: 180 VEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELEE 239
Query: 62 ENNQHQVTL 36
E+ +Q+ +
Sbjct: 240 EDETNQIPI 248
[244][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 73.6 bits (179), Expect = 7e-12
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVEN 237
+I+ HIATL E L +E I R GY S M+ +F ID+VFMPV
Sbjct: 140 VINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQIDSVFMPVRK 195
Query: 236 ANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V
Sbjct: 196 VNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEV 247
[245][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 72.8 bits (177), Expect = 1e-11
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHS 225
II+ +IAT++ L IE K ER GY L F D+S IDA+FMP++ +
Sbjct: 122 IINPNHYIATISTSNVLEIEFKFERGTGYKLA-GQTFCDKSEDFLQIDAIFMPIQKVDFK 180
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
I + Y N N E LFL+IWTNGS++P +A+ AS+ +I F
Sbjct: 181 IENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[246][TOP]
>UniRef100_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YDX0_DICT6
Length = 324
Score = 72.4 bits (176), Expect = 1e-11
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 15/139 (10%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI-----DAVFMPVENANHSIHSYG 210
IATL E + +E+++++ +GY N +D++YPI D++F PV+ ++++
Sbjct: 124 IATLVEDMPFHMEVEVKKGKGYVSAEEN--KDQNYPIGVLVLDSIFSPVKKVSYTVEKTR 181
Query: 209 NGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLF---------IPFLHVEEETFYLE 60
G + L LEIWTNGS++P+EA +ASR L+ F +P+ V+ E YLE
Sbjct: 182 VGRRTDLDRLILEIWTNGSISPEEAFREASRILMEYFRLLNEKEFQLPYEEVKPENTYLE 241
Query: 59 NNQHQVTLPFFPFHNRLVN 3
+ +TL R N
Sbjct: 242 EEKKGLTLEDLGLSTRAYN 260
[247][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 72.4 bits (176), Expect = 1e-11
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
IID Q+IAT+ +E +IE+ GY L ++ F+ +S IDAVFMPV N++
Sbjct: 120 IIDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYT 178
Query: 224 IHSYGNGNEK-------QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
+ EK QE LFLE+WTNGSL+P+EA+ + ++ L +LF P ++ +
Sbjct: 179 VE------EKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNAN 232
Query: 65 LENNQHQ 45
+N+++
Sbjct: 233 NTDNEYE 239
[248][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 71.6 bits (174), Expect = 2e-11
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHSI 222
I++ Q+IAT++ + L +E K E GY L E S IDAVFMPV+ + +
Sbjct: 123 ILNPNQYIATISRSMILEMEFKFESGIGYRLVNQTKMESSSDFLEIDAVFMPVQKVDFKV 182
Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+ Y E L ++IWTNGS++P+ AL+++S N+I LF
Sbjct: 183 ENIYDKNKHISENLIIDIWTNGSISPETALYESSNNIIELF 223
[249][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 70.9 bits (172), Expect = 4e-11
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENANHS 225
II+ +IAT++ L IE K E GY L S NF ED +Y +D +FMPV+ +
Sbjct: 120 IINPNHYIATISTSNILEIEFKFEYGSGYHLA-SQNFVEEDENYLQLDTIFMPVQKVDFK 178
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 179 IENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[250][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 70.5 bits (171), Expect = 6e-11
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = -3
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQ+IATLT+ I L IE +IE++ GY ++ S D + +DAVFMP+ NAN+SIHS
Sbjct: 129 IIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHS 188
Query: 215 YGNGNE 198
+ N N+
Sbjct: 189 FENKNK 194