Gene/Protein Characteristic Table for FLJ00041

Description

Product ID:	ORK01031
Accession No.:	AK024449
Alias Name:
Clone Name:	as00041 [Vector Info]
Source:	Human spleen

Features of the cloned DNA sequence	Description

Length: 4689
Physical map
Restiction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3694 bp

Genome contig ID gi29824581r_73299741
PolyA signal sequence
(AGTAAA,-22)
+----*----+----*----+----*----+----
TCTTGTCAAAACAAGTAAACGGTGGAACTACGACT
Flanking genome sequence None

Genomic structure deduced by Blast search against draft genome sequences

Features of the predicted protein sequence	Description

Length: 330

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB15739	3.7e-133	100.0	FLJ00041 protei...	Homo sapiens
Q9H7M9	4e-124	100.0	Platelet recept...	Homo sapiens
AAQ88745	7.1e-124	99.7	GVPT730 [Homo s...	Homo sapiens
XP_001928572	5.7e-102	83.0	similar to Plat...	Sus scrofa
AAI11049	3.2e-101	100.0	C10orf54 protei...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMSmart IPR003599 58 188 SM00409 Immunoglobulin subtype

ProfileScan IPR007110 48 211 PS50835 Immunoglobulin-like

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR003599	58	188	SM00409	Immunoglobulin subtype
ProfileScan	IPR007110	48	211	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 35 57 SLLFALFLAASLGPVAAFKVATP

212 234 AAALATGACIVGILCLPLILLLV

Method	From	To	amino acid sequence
SOSUI	35	57	SLLFALFLAASLGPVAAFKVATP
212	234	AAALATGACIVGILCLPLILLLV

Expression profile

RT-PCR-ELISA	Description

Experimental conditions

Primer_f	: GGAATTAGGGGCCATCTTACC
Primer_r	: CTCCATGGTGTGTTTTTAGGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

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	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3694 bp
Genome contig ID	gi29824581r_73299741
PolyA signal sequence (AGTAAA,-22)	+--------+--------+----*----+---- TCTTGTCAAAACAAGTAAACGGTGGAACTACGACT
Flanking genome sequence	None