hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36281/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1763  ( 1330 res)   mfj36281

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LamG     Laminin G domain                               384.2     8e-111   4
FA58C    Coagulation factor 5/8 C-terminal domain, di    79.2      5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FA58C      1/1      52   199 ..     1   199 []    79.2    5e-19
LamG       1/4     226   363 ..     1   137 []    98.3    9e-25
LamG       2/4     412   546 ..     1   137 []   100.6  1.8e-25
LamG       3/4     835   962 ..     1   137 []   123.8  1.8e-32
LamG       4/4    1060  1198 ..     1   137 []    67.8  1.4e-15

Alignments of top-scoring domains:
FA58C: domain 1 of 1, from 52 to 199: score 79.2, E = 5e-19
                   *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl
                      +C+epl     +++  +  +sss+ + +    +g +   aRln+   
   mKIAA1763    52    DCDEPLVS---ALPQ-ASFSSSSELSSS----HGPGF--ARLNR--- 85   

                   nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGrr
                     ++g+g+W+p   s+        +++w+++DLg+  + vt v T++G  
   mKIAA1763    86 --RDGAGGWSPL-VSN--------KYQWLQIDLGER-MEVTSVaTQGG-- 121  

                   rrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtges
                        +g+ +wvt y+++++d++r         +W  y+         e+
   mKIAA1763   122 -----YGSSNWVTSYLLMFSDSGR---------NWKQYRQ--------ED 149  

                   kvFg..gNadagtvvlndfppPivARYvRilPtaentratgwhngiilRl
                    ++g +gNa+a+ vv+  + p i+AR+ R++P+++n     + ++i++R+
   mKIAA1763   150 SIWGfsGNANADSVVYYRLQPSIKARFLRFIPLEWN-----PKGRIGMRI 194  

                   ELlGC<-*
                   E++GC   
   mKIAA1763   195 EVFGC    199  

LamG: domain 1 of 4, from 226 to 363: score 98.3, E = 9e-25
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                       +  is+ F+T +++G+Ll+ +++ gd+++leL+      +G+l l 
   mKIAA1763   226    IrDIISLKFKTMESDGILLHRAgpAGDHITLELR------RGKLFLL 266  

                   ydlGsst...tggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg
                   ++ G+ + +++ + + lt +      l+D +WH+V ++r g++v+ +VD 
   mKIAA1763   267 INSGDARltsSSTLINLTLG----SLLDDQHWHSVLIQRLGKQVNFTVD- 311  

                   gnpvsges....t.LdldkeesgplylGGlPe.....lpvspgFrGCirn
                   +++ + +++++   Ldld      + +GG+ ++ ++ ++  ++F+GC++n
   mKIAA1763   312 EHRRHFHAqgefNyLDLD----YEISFGGISApaksvSLPYKHFHGCLEN 357  

                   lrvngk<-*
                   l++ng+   
   mKIAA1763   358 LFYNGV    363  

LamG: domain 2 of 4, from 412 to 546: score 100.6, E = 1.8e-25
                   *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl
                         s sf+FrT+ + GlLl++  +  +  l l L+      dG+l+l
   mKIAA1763   412    EaISASFQFRTWNKAGLLLFSElqlVSGSLLLLLS------DGKLKL 452  

                   rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn
                   ++   +   ++p+ +t++      l DGqWH+Vs++ ++++++++VD g+
   mKIAA1763   453 TLYQPG---KSPSDITAG----AGLGDGQWHSVSLSAKRNHLSVVVD-GH 494  

                   pvsges....t.LdldkeesgplylGGlPe.......lpvspgFrGCirn
                      ++   ++++ ++     g +y+GG P+++ +++ +    gF+GC+r 
   mKIAA1763   495 ISPASPwlgpEqVNSG----GVFYFGGCPDkgfgskcKSPLGGFQGCMRL 540  

                   lrvngk<-*
                   +++n+k   
   mKIAA1763   541 ISINNK    546  

LamG: domain 3 of 4, from 835 to 962: score 123.8, E = 1.8e-32
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                       + ++sf F+Tt+ +G+ l + + +df+ +eL+     +  ++++++
   mKIAA1763   835    LsADVSFFFKTTALSGVFLENLgITDFIRIELR-----SPTTVTFSF 876  

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                   d G+    gp++l+++s  pt++nD+qWH+V+vern ++++L VD ++p 
   mKIAA1763   877 DVGN----GPFELSVHS--PTHFNDNQWHHVRVERNMKEASLRVD-ELPP 919  

                   sges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<
                      + +++++  L+l+    ++l++GG+   + + gF GCir+l++ng+ 
   mKIAA1763   920 KIQAaptdghVlLQLN----SQLFVGGTA--TRQRGFLGCIRSLQLNGM  962  

                   -*
                     
   mKIAA1763     -    -    

LamG: domain 4 of 4, from 1060 to 1198: score 67.8, E = 1.4e-15
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                      +++ i fsFrTt +  lLl++++  +++l++ +      ++G l+ r
   mKIAA1763  1060    SrEMIKFSFRTTRAPSLLLHMSsfYKEYLSIIIA-----KNGSLQIR 1101 

                   ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp
                   y l+    +++  + s +   ++++DGq H++++ r+++ v + +D +n+
   mKIAA1763  1102 YKLNK---YHEPDVISFDL--KSMADGQLHHIKINREEGMVFVEID-ENT 1145 

                   vsges....t.LdldkeesgplylGGlPe.........lpvspgFrGCir
                    +++  +++t++        +l lG + e ++ ++++ l+  +gF+GC++
   mKIAA1763  1146 RRQTYlssgTeFSAV----KSLVLGRMLEysdvdqetaLAAAHGFTGCLS 1191 

                   nlrvngk<-*
                    +++ +    
   mKIAA1763  1192 AVQFSHI    1198 

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