hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp08305/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1666  ( 1139 res)   mbp08305

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                          95.6      6e-24   3
FN3      Fibronectin type 3 domain                       32.7      5e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/3     358   421 ..     1    58 []    41.3  1.3e-07
FN3        1/2     513   585 ..     1    69 []    26.0   0.0053
FN3        2/2     606   693 ..     1    69 []     7.1       32
SH3        2/3     956  1020 ..     1    58 []    19.5    0.086
SH3        3/3    1072  1135 ..     1    58 []    35.0    1e-05

Alignments of top-scoring domains:
SH3: domain 1 of 3, from 358 to 421: score 41.3, E = 1.3e-07
                   *->eyvvAlYDyea......qnedELsFkkGDiitvleks.ddgWweGel
                      + + A  +y++ +++++   + L++++GD ++v  + ++dg +eGel
   mKIAA1666   358    KLFLARSSYNPfegpseHCQGKLPLTAGDYVYVFGDMdEDGFYEGEL 404  

                   nrtGkeGlfPsnYVeeie<-*
                     +G++Gl+Psn Ve+i    
   mKIAA1666   405 V-NGQRGLVPSNLVEPIS    421  

FN3: domain 1 of 2, from 513 to 585: score 26.0, E = 0.0053
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                        +P     l++ +vt+t      s+t++W   ++ ++ v Y ++++
   mKIAA1666   513    CLAPME---LQLQNVTAT------SATITWASGsnrypHVVYLddee 550  

                   ..........ytltgLkPgaepwteYefrVrAvngndaGeg<-*
                      ++++++ yt+ gL+Pg    t Y++rV +     +      
   mKIAA1666   551 hiltpsgvnhYTFQGLHPG----TCYRVRVGVQLP--RDLL    585  

FN3: domain 2 of 2, from 606 to 693: score 7.1, E = 32
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv
                      P+pP +   l+ ++ ++        +++sW p   ++ +++++  ++
   mKIAA1666   606    PDPPLDV--LVEHHASPG------VLVVSWLPVtidsagssngvqVT 644  

                   gYr....................ytltgLkPgaepwteYefrVrAvngnd
                   gY + +++ +++++ + + +++   ++ L+      +  +++Vr  +   
   mKIAA1666   645 GYAvyvdgfkvtevadatagntlLEFSQLQVPL---SCQKVSVRTMSL-- 689  

                   aGeg<-*
                   +Ge+   
   mKIAA1666   690 YGES    693  

SH3: domain 2 of 3, from 956 to 1020: score 19.5, E = 0.086
                   *->eyvvAlYDyea........qnedELsFkkGDiitvleks.ddgWweG
                      +++ Al+D+ +   + +++  e+EL F+kG+ ++v    +  g + G
   mKIAA1666   956    RVFLALFDHSPlvisvnseAAEEELAFQKGQLLRVWGSLdLHGFYHG 1002 

                   elnrtGkeGlfPsnYVeeie<-*
                   e+n  G  G +P+  V e+e   
   mKIAA1666  1003 ECN--GHLGKIPGHLVVEVE    1020 

SH3: domain 3 of 3, from 1072 to 1135: score 35.0, E = 1e-05
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleks.ddgWweGe
                      +++vA  Dy++++++ + q  + L +++GD++tv   ++d g ++Ge
   mKIAA1666  1072    KTMVAALDYDPrdgragvQAKGKLVLRAGDVVTVYGPVdDKGFYYGE 1118 

                   lnrtGkeGlfPsnYVeeie<-*
                    +  G +Gl+P+  +  ++   
   mKIAA1666  1119 YG--GHRGLVPAHLLDDLP    1135 

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