hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp08305/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1666  ( 1139 res)   mbp08305

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_2    Variant SH3 domain                             148.3    1.4e-40   3
SH3_1    SH3 domain                                      22.1    0.00086   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/2     358   420 ..     1    58 []    17.3   0.0027
SH3_2      1/3     359   420 ..     1    69 []    49.2  8.8e-11
SH3_2      2/3     957  1019 ..     1    69 []    47.5  2.9e-10
SH3_1      2/2    1072  1134 ..     1    58 []     4.9    0.051
SH3_2      3/3    1073  1134 ..     1    69 []    51.8  1.6e-11

Alignments of top-scoring domains:
SH3_1: domain 1 of 2, from 358 to 420: score 17.3, E = 0.0027
                   *->kkvvALYDYeare.sdE.....LsFkkGDvitvleksdd.gWWkgrl
                      k + A   Y++ e+++E+ +++L+++ GD ++v  + d++g ++g+l
   mKIAA1666   358    KLFLARSSYNPFEgPSEhcqgkLPLTAGDYVYVFGDMDEdGFYEGEL 404  

                   kgtgGkeGliPsNYVepv<-*
                    +  G++Gl+PsN Vep+   
   mKIAA1666   405 VN--GQRGLVPSNLVEPI    420  

SH3_2: domain 1 of 3, from 359 to 420: score 49.2, E = 8.8e-11
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkvidvggskdddgww
                      ++ a  +y++   ++++ ++ + L l++Gd v+v+   g++d dg++
   mKIAA1666   359    LFLARSSYNP--FEGPSEhCQGKLPLTAGDYVYVF---GDMDEDGFY 400  

                   lgeslggGrrrRGlvPssaveel<-*
                   +ge+  +G+r  GlvPs++ve++   
   mKIAA1666   401 EGEL-VNGQR--GLVPSNLVEPI    420  

SH3_2: domain 2 of 3, from 957 to 1019: score 47.5, E = 2.9e-10
                   *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkvidvggskdddgw
                      ++ a++d+ +    + n + +eeeL+++kG++++v+   gs d +g+
   mKIAA1666   957    VFLALFDHSP-LVISVNSeaAEEELAFQKGQLLRVW---GSLDLHGF 999  

                   wlgeslggGrrrRGlvPssaveel<-*
                   ++ge+  +G+   G +P ++v e+   
   mKIAA1666  1000 YHGEC--NGHL--GKIPGHLVVEV    1019 

SH3_1: domain 2 of 2, from 1072 to 1134: score 4.9, E = 0.051
                   *->kkvvALYDYeare.......sdELsFkkGDvitvleksdd.gWWkgr
                      k+ vA  DY++r+++ + +  + L ++ GDv+tv   +dd+g ++g+
   mKIAA1666  1072    KTMVAALDYDPRDgragvqaKGKLVLRAGDVVTVYGPVDDkGFYYGE 1118 

                   lkgtgGkeGliPsNYVepv<-*
                   +    G++Gl+P+  +++    
   mKIAA1666  1119 YG---GHRGLVPAHLLDDL    1134 

SH3_2: domain 3 of 3, from 1073 to 1134: score 51.8, E = 1.6e-11
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkvidvggskdddgww
                       ++a  dy++ +d +++ ++++ L l++Gdvv v+   g  dd g++
   mKIAA1666  1073    TMVAALDYDP-RDGRAGVqAKGKLVLRAGDVVTVY---GPVDDKGFY 1115 

                   lgeslggGrrrRGlvPssaveel<-*
                   +ge+  gG+r  GlvP++++  l   
   mKIAA1666  1116 YGEY--GGHR--GLVPAHLLDDL    1134 

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