hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mng/mng09179/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1501  ( 606 res)   mng09179

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   230.8    1.1e-64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1      36   213 ..     1   193 []   230.8  1.1e-64

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 36 to 213: score 230.8, E = 1.1e-64
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +++P+iv+ C++ +e+rGl+  GIYRv+G++ +v  L+e++++g+++
   mKIAA1501    36    QRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPSd 82   

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                     +           d++++d +++++lLK ++R+LPePL+t++ y +fie
   mKIAA1501    83 INLQ----------DERWQDLNVISSLLKAFFRKLPEPLFTDDKYNDFIE 122  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a ++              ed  er + lr+l++ LP ++++tL++L +HL
   mKIAA1501   123 ANRI--------------EDSRERMKTLRKLIRDLPGHYYETLKFLVgHL 158  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   + +a+hse+NkM +rNLA+vFgPtL r ++++ ++ +t++    k+vetl
   mKIAA1501   159 KTIADHSEKNKMEPRNLALVFGPTLVRTSednmtdmVTHMPDRYKIVETL 208  

                   ienad<-*
                   i+++d   
   mKIAA1501   209 IQHSD    213  

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