hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1083  ( 614 res)   mpm04136

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
AAA          ATPase family associated with various ce   255.4    7.9e-73   1
AAA_5        ATPase family associated with various ce    12.7     0.0024   1
Mg_chelatase Magnesium chelatase, subunit ChlI         -158.4        0.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
AAA_5          1/1     375   506 ..     1   184 []    12.7   0.0024
Mg_chelatase   1/1     339   514 ..     1   209 []  -158.4      0.8
AAA            1/1     375   560 ..     1   216 []   255.4  7.9e-73

Alignments of top-scoring domains:
AAA_5: domain 1 of 1, from 375 to 506: score 12.7, E = 0.0024
                   *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg
                      ++lL GppG GKt+la+ +aa      ++ +f +     t+     g
   mKIAA1083   375    GLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSKYVGEG 417  

                   rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras
                   +  +              ++L + ar        +  + i+++DE++   
   mKIAA1083   418 EKLV--------------RALFAVAR--------ELQPSIIFIDEVD--- 442  

                   pevlnvLlslLderrlllpdggelvkvppydklaerg.reeldlwklgrl
                           slL err    d  +++k +   ++ ++++            
   mKIAA1083   443 --------SLLCERREGEHDASRRLKTEFLIEFDGVQsAGD--------- 475  

                   ihd.frlIatsNpldgprglnelsaALrrRFlfvtvdpp<-*
                     d++ +++++N+++      el++A +rRF  +    +   
   mKIAA1083   476 --DrVLVMGATNRPQ------ELDEAVLRRFIKRVYVSL    506  

Mg_chelatase: domain 1 of 1, from 339 to 514: score -158.4, E = 0.8
                   *->DlaDVkGQeqAKRAL.EI...............AAAGgHNLLmiGPP
                       + D+ GQe AK AL+EI   ++ +++  ++ +A A g  LL++GPP
   mKIAA1083   339    -FDDIAGQELAKQALqEIvilpslrpelftglrAPARG--LLLFGPP 382  

                   GsGKtMLAkRLpgILPPLseeEaLEvtaihSvaGllggdgglirrRPFRa
                   G GKtMLAk   +     +        + +S+++ +   +g    R   a
   mKIAA1083   383 GNGKTMLAKAVAA-----ESNATFFNISAASLTS-KYVGEGEKLVRALFA 426  

                   PHHsaSaaALvGGGsgiprPGEISLAHnGVLFLDElPEFsrrvLEsL...
                          +A      ++ +P   S     + F DE+        +sL  +
   mKIAA1083   427 -------VA------RELQP---S-----IIFIDEV--------DSLlce 447  

                   .RqPLEdGevtIsRaaak...vtyPA.......rFqLVAAmNPCPCGylg
                   +R+    Ge   sR   ++  +++   ++ +++r++ ++A+N        
   mKIAA1083   448 rRE----GEHDASRRLKTeflIEFDGvqsagddRVLVMGATN-------- 485  

                   dpdkrCrCsprqirrYlsrlSGPLLDRIDlqveVprlsaeeL<-*
                     +++    ++  rr  +r          ++v  p  +   L   
   mKIAA1083   486 -RPQELD--EAVLRRFIKR----------VYVSLPNEETRLL    514  

AAA: domain 1 of 1, from 375 to 560: score 255.4, E = 7.9e-73
                   *->gvLLyGPPGtGKTlLAkavAnelgvpfisisgselvskyvGesekrv
                      g+LL+GPPG GKT+LAkavA e++++f++is+++l+skyvGe+ek+v
   mKIAA1083   375    GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421  

                   ralfelArkslkkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLLte
                   ralf  Ar+     +Ps iiFIDE+D+l   R ++e+d+s+r++ ++L+e
   mKIAA1083   422 RALFAVAREL----QPS-IIFIDEVDSLLCERREgEHDASRRLKTEFLIE 466  

                   mDLerigfekhylrgsdvvDlsnvlviaaTNrpdlldpaLlrpGRfdrei
                    D    g+ +  +        ++vlv++aTNrp++ld+a lr  Rf++++
   mKIAA1083   467 FD----GVQSAGD--------DRVLVMGATNRPQELDEAVLR--RFIKRV 502  

                   evplPdeeerleIlkihlkkmplalcqelselakdvdleelaeelArrtp
                   +v lP+ee+rl  lk++l k    l        +  +l +    lAr+t+
   mKIAA1083   503 YVSLPNEETRLLLLKNLLCKQGSPL--------TQKELAQ----LARMTD 540  

                   gfsgadlaalcreAalralr<-*
                   g+sg+dl+al+++Aal ++r   
   mKIAA1083   541 GYSGSDLTALAKDAALGPIR    560  

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