hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00079/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0993  ( 646 res)   mbg00079

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FYVE     FYVE zinc finger                               101.8    1.4e-26   1
WD40     WD domain, G-beta repeat                        69.6    6.6e-17   5
Beach    Beige/BEACH domain                             -21.0    6.6e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Beach      1/1       1    96 [.     1   287 []   -21.0  6.6e-15
WD40       1/5     190   226 ..     1    38 []     2.6       98
WD40       2/5     238   275 ..     1    38 []    42.4    1e-08
WD40       3/5     280   316 ..     1    38 []    16.9     0.48
WD40       4/5     323   365 ..     1    38 []    20.6    0.038
WD40       5/5     521   558 ..     1    38 []     2.9       88
FYVE       1/1     569   635 ..     1    77 []   101.8  1.4e-26

Alignments of top-scoring domains:
Beach: domain 1 of 1, from 1 to 96: score -21.0, E = 6.6e-15
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                                                                     
   mKIAA0993     -    ----------------------------------------------- -    

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                                                                     
   mKIAA0993     - -------------------------------------------------- -    

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                                                                     
   mKIAA0993     - -------------------------------------------------- -    

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd
                                                           PWAkg    d
   mKIAA0993     1 ----------------------------------------PWAKG----D 6    

                   PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY
                   P+eFi+ hReALE dYVSahLHeWIDLIFGYKQ+G++Av A+NVFhhl+Y
   mKIAA0993     7 PREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFY 56   

                   eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   eG VD+ +i DP+   A++++I+nFGQ+PkQLF+kPHP++   
   mKIAA0993    57 EGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK    96   

WD40: domain 1 of 5, from 190 to 226: score 2.6, E = 98
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++     + + c  +  +  +l+++g+    +++W+   
   mKIAA0993   190    VTVYEClSEWGQILCAVCPNP--KLVITGGTSTVVCVWE    226  

WD40: domain 2 of 5, from 238 to 275: score 42.4, E = 1e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++ l gHt++Vtc   s   +++++sgSrD+t+ iWd   
   mKIAA0993   238    TLKQALlGHTDTVTCATASLA-YHIIVSGSRDRTCIIWD    275  

WD40: domain 3 of 5, from 280 to 316: score 16.9, E = 0.48
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        l+ l+gH +pV++++++      ++s+     i++W+   
   mKIAA0993   280    SFLTQLrGHRAPVSALCINEL-TGDIVSCAG-TYIHVWS    316  

WD40: domain 4 of 5, from 323 to 365: score 20.6, E = 0.038
                   *->eclavl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-*
                        + +++g +  + c++ s  ++ + ++++++g +Dg ++ W    
   mKIAA0993   323    VSVNTFtGRSQQIVCCCMSEMnewdTQNVIVTGHSDGVVRFWR    365  

WD40: domain 5 of 5, from 521 to 558: score 2.9, E = 88
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  + H + Vt++ +s d  ++++ g + g +  W+   
   mKIAA0993   521    AFDRKDnTHPAEVTALGVSKD-HSRILVGDSRGRVFSWS    558  

FYVE: domain 1 of 1, from 569 to 635: score 101.8, E = 1.4e-26
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      +hWv+De  ++C+ C++ F+ lt+RrHHCR+CG++fC++Cs++ + +
   mKIAA0993   569    DHWVKDEGGDSCSGCSVRFS-LTERRHHCRNCGQLFCQKCSRFQSEI 614  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   + l i         + pvRVC++Cy +l++   
   mKIAA0993   615 KRLKI---------SSPVRVCQNCYYSLQH    635  

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