hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10083/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0982  ( 504 res)   mpm10083

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       164.7    1.6e-45   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6     155   193 ..     1    38 []    25.7   0.0011
WD40       2/6     198   235 ..     1    38 []    39.4  8.1e-08
WD40       3/6     282   319 ..     1    38 []    28.9  0.00012
WD40       4/6     324   361 ..     1    38 []    37.8  2.5e-07
WD40       5/6     368   404 ..     1    38 []    37.3  3.6e-07
WD40       6/6     455   494 ..     1    38 []    14.3      2.8

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 155 to 193: score 25.7, E = 0.0011
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++++ gH +++++v++   ++ +l ++S+D+t  +W+   
   mKIAA0982   155    QLVKEYiGHRDGIWDVSVTRTQPIVLGTASADHTALLWS    193  

WD40: domain 2 of 6, from 198 to 235: score 39.4, E = 8.1e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cl  + gH ++V++++f+p+  +l +++S D t +iW    
   mKIAA0982   198    KCLVKYaGHVGSVNSIKFHPS-EQLALTASGDQTAHIWR    235  

WD40: domain 3 of 6, from 282 to 319: score 28.9, E = 0.00012
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l++l+ H++ V + ++    g++++++S+D+t  ++d   
   mKIAA0982   282    VPLTSLkSHQGVVIAADWLVG-GKQVVTASWDRTANLYD    319  

WD40: domain 4 of 6, from 324 to 361: score 37.8, E = 2.5e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e++++l+gH    t ++ +p  ++l++++SrD t ++Wd   
   mKIAA0982   324    ELVHSLtGHDQELTHCCTHPT-QRLVVTSSRDTTFRLWD    361  

WD40: domain 5 of 6, from 368 to 404: score 37.3, E = 3.6e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        + v++gHt++Vt+  f       ++sgS+D+t+k+Wd   
   mKIAA0982   368    HSVNVFqGHTDTVTSAVFTVG--DNVVSGSDDRTVKVWD    404  

WD40: domain 6 of 6, from 455 to 494: score 14.3, E = 2.8
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                       + ++ +gH   V+c a+s d + + l++++ D+    W+   
   mKIAA0982   455    LPRSSRqGHRRMVCCSAWSEDhPICNLFTCGFDRQAIGWN    494  

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