hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00855/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0612  ( 353 res)   mbj00855

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                          72.6    4.8e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/2     139   203 ..     1    58 []    58.4  9.1e-13
SH3        2/2     278   348 ..     1    58 []    14.3     0.29

Alignments of top-scoring domains:
SH3: domain 1 of 2, from 139 to 203: score 58.4, E = 9.1e-13
                   *->eyvvAlYDyea........qnedELsFkkGDiitvleks.ddgWweG
                      +++vAl+Dy++ + +++++ +e+EL+Fk+G+ + v  + + dg ++G
   mKIAA0612   139    RVFVALFDYDPvsmspnpdAGEEELPFKEGQLLKVFGDKdADGFYRG 185  

                   elnrtGkeGlfPsnYVeeie<-*
                   e +  G++G++P+n V+e+    
   mKIAA0612   186 ESG--GRTGYIPCNMVAEVA    203  

SH3: domain 2 of 2, from 278 to 348: score 14.3, E = 0.29
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleks.ddgWweGe
                      + +vA +Dy++++++++ + e EL+F++GD+itv    +ddg ++++
   mKIAA0612   278    RPMVAAFDYNPrenspnmDVEAELPFRAGDVITVFGNMdDDGFYYVR 324  

                   lnrtGkeGlfP......snYVeeie<-*
                       GkeG   ++++ ++ Y +      
   mKIAA0612   325 SS-WGKEGVLCsgspagHAYGQTFL    348  

//