hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00855/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0612  ( 353 res)   mbj00855

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_2    Variant SH3 domain                             120.4    3.4e-32   2
SH3_1    SH3 domain                                      42.1    1.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1     139   202 ..     1    58 []    42.1  1.3e-08
SH3_2      1/2     140   202 ..     1    69 []    78.8  1.1e-19
SH3_2      2/2     279   351 ..     1    69 []    41.6  1.8e-08

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 139 to 202: score 42.1, E = 1.3e-08
                   *->kkvvALYDYeare........sdELsFkkGDvitvleksdd.gWWkg
                      +++vAL+DY++++ +++++ +++EL+Fk+G  ++v  ++d++g ++g
   mKIAA0612   139    RVFVALFDYDPVSmspnpdagEEELPFKEGQLLKVFGDKDAdGFYRG 185  

                   rlkgtgGkeGliPsNYVepv<-*
                   ++    G++G+iP+N V++v   
   mKIAA0612   186 ESG---GRTGYIPCNMVAEV    202  

SH3_2: domain 1 of 2, from 140 to 202: score 78.8, E = 1.1e-19
                   *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkvidvggskdddgw
                      +++a++dy++  ++++n++ +eeeL +k+G+++kv+   g+kd dg+
   mKIAA0612   140    VFVALFDYDP-VSMSPNPdaGEEELPFKEGQLLKVF---GDKDADGF 182  

                   wlgeslggGrrrRGlvPssaveel<-*
                   ++ges  gGr+  G++P ++v+e+   
   mKIAA0612   183 YRGES--GGRT--GYIPCNMVAEV    202  

SH3_2: domain 2 of 2, from 279 to 351: score 41.6, E = 1.8e-08
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkvidvggskdddgww
                      +++a +dy++ + +++n+++e+eL +++Gdv+ v+   g++dddg++
   mKIAA0612   279    PMVAAFDYNP-RENSPNMdVEAELPFRAGDVITVF---GNMDDDGFY 321  

                   lgeslggGrr.r......RGlvP.ssaveel<-*
                   +++s + G++++  ++++ G++++ ++++e    
   mKIAA0612   322 YVRS-SWGKEgVlcsgspAGHAYgQTFLAEG    351  

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