hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01323/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0546  ( 1638 res)   mbg01323

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        25.9    0.00091   4
TPR_1    Tetratricopeptide repeat                        25.1     0.0016   2
PPTA     Protein prenyltransferase alpha subunit repe    15.4        0.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_2      1/4    1010  1049 ..     1    34 []     1.2  1.6e+02
PPTA       1/1    1034  1064 ..     1    31 []    15.4      0.5
TPR_2      2/4    1127  1160 ..     1    34 []     3.5       84
TPR_1      1/2    1251  1284 ..     1    34 []    14.2     0.73
TPR_2      3/4    1251  1284 ..     1    34 []     5.7       46
TPR_1      2/2    1285  1318 ..     1    34 []    11.0      1.8
TPR_2      4/4    1285  1318 ..     1    34 []    22.6   0.0095

Alignments of top-scoring domains:
TPR_2: domain 1 of 4, from 1010 to 1049: score 1.2, E = 1.6e+02
                   *->aealynlGlayyklgd......yeeAleayekAleldPnn<-*
                      + ++  l+  y++++++  +++++ Al+ + +Ale +++n   
   mKIAA0546  1010    VQLWLKLAYKYLNQNEglcsesLDSALNVLARALENNKDN    1049 

PPTA: domain 1 of 1, from 1034 to 1064: score 15.4, E = 0.5
                   *->eELelteklleldpkNysaWnyRrwlleklg<-*
                       +L+ ++++le++ +N  +W++   l++k g   
   mKIAA0546  1034    SALNVLARALENNKDNPEIWCHYLRLFSKRG    1064 

TPR_2: domain 2 of 4, from 1127 to 1160: score 3.5, E = 84
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       eal  + ++++  g+ + Al+ ++ Al+l+ ++   
   mKIAA0546  1127    LEALLFRVQLHIFTGRCQSALAVLQNALKLANDA    1160 

TPR_1: domain 1 of 2, from 1251 to 1284: score 14.2, E = 0.73
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                         y+n+ +++  l++y+eA+e ++  Le  P+n   
   mKIAA0546  1251    LPLYTNMIALHQLLERYEEAVELCTSLLESCPTN    1284 

TPR_2: domain 3 of 4, from 1251 to 1284: score 5.7, E = 46
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        ++ n+  ++  l++yeeA+e++   le  P+n   
   mKIAA0546  1251    LPLYTNMIALHQLLERYEEAVELCTSLLESCPTN    1284 

TPR_1: domain 2 of 2, from 1285 to 1318: score 11.0, E = 1.8
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       + +  l+++ylk  +yd+A      A e +P+n   
   mKIAA0546  1285    CQLLETLAALYLKTDRYDKARRVWLTAFENNPQN    1318 

TPR_2: domain 4 of 4, from 1285 to 1318: score 22.6, E = 0.0095
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        +l  l+ +y+k  +y++A++ +  A e +P+n   
   mKIAA0546  1285    CQLLETLAALYLKTDRYDKARRVWLTAFENNPQN    1318 

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