hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp09103/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0522  ( 646 res)   mbp09103

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                     33.4    2.2e-07   1
PH       Pleckstrin homology domain.                     25.3     0.0083   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1       1    99 [.     1   226 []    33.4  2.2e-07
PH         1/1     130   241 ..     1    82 []    25.3   0.0083

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 1 to 99: score 33.4, E = 2.2e-07
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                                                                    l
   mKIAA0522     1    ----------------------------------------------L 1    

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   +                                                 
   mKIAA0522     2 I------------------------------------------------- 2    

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                               r++GEaQk++Rl+eaFs+rYc cNp   ++++      
   mKIAA0522     3 ------------RVQGEAQKVERLIEAFSQRYCVCNPALVRQFR------ 34   

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n+D++++La+++I+LNTD+++p vk ++      KM++ dFikNlr
   mKIAA0522    35 ----NPDTIFILAFAIILLNTDMYSPSVKAER------KMKLDDFIKNLR 74   

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g++    +ged+pr++L ++Y++I+ +e+   
   mKIAA0522    75 GVD----NGEDIPRDLLVGIYQRIQGREL    99   

PH: domain 1 of 1, from 130 to 241: score 25.3, E = 0.0083
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      ++++ +L+   +++++++ + ++r ++Lfn+ L+ +k  ++++   +
   mKIAA0522   130    LVCCCQLYEVPdpnrpqRlGLHQREVFLFNDLLVVTKIFqkkkilvt 176  

                   .kpkgsipLsgcsvre.p......cFeivt.dr......tlllqAeseee
                    + + s+pL ++  +   ++    ++++ +   +++++  +++ A+s ++
   mKIAA0522   177 ySFRQSFPLVEMHMQLfQnsyyqfGIKLLSaVPggerkvLIIFNAPSLQD 226  

                   reeWvealqsaiaka<-*
                   r +  + l++ ia+    
   mKIAA0522   227 RLRFTSDLRESIAEV    241  

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