hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg13653/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0455  ( 795 res)   mbg13653

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAP2     PAP2 superfamily                               127.1    3.2e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAP2       1/1     208   361 ..     1   176 []   127.1  3.2e-34

Alignments of top-scoring domains:
PAP2: domain 1 of 1, from 208 to 361: score 127.1, E = 3.2e-34
                   *->aalallfalvasallnglaylKllfgrpRAPhflavcqpdwgdstcs
                      ++++++f+l+++al++++  ++l++g++  P                
   mKIAA0455   208    FVGVHVFGLCSTALITDI--IQLSTGYQA-P---------------- 235  

                   dlwyeelygl.e.fycmagspg.ldrid.lfgsvlltsafalvseggpSF
                          y+l++ ++++++ ++++++++  + +++ +s+ +++  g++SF
   mKIAA0455   236 -------YFLtVcKPNYTSLNVsCKENSyIVEDICSGSDLTVINSGRKSF 278  

                   PSGHaafaaaaalflalylprrlstls.rllrlllgllllllallvglSR
                   PS Ha++aa+aa++++ y+ + + t s++ll++ll++ ++++++ +gl+R
   mKIAA0455   279 PSQHATLAAFAAVYVSMYFNS-TLTDSsKLLKPLLVFTFIICGIICGLTR 327  

                   vylgvHypsDVlaGallGaliallvllfvrrlld<-*
                   +  ++ +p+DV  G+l+G +ial+  l+  +++    
   mKIAA0455   328 ITQYKNHPVDVYCGFLIGGGIALYLGLYAVGNFL    361  

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