hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08890/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0439  ( 442 res)   mbg08890

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      69.7    3.5e-16   1
WW                                                       59.7    3.6e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1       4   102 ..     1    92 []    69.7  3.5e-16
WW         1/1     172   204 ..     1    34 []    59.7  3.6e-13

Alignments of top-scoring domains:
C2: domain 1 of 1, from 4 to 102: score 69.7, E = 3.5e-16
                   *->tLtvkiisArnLp...DPYVkvs.............kTkvvkktlsg
                       L   +++   Lp+  DPYVk+s    + ++     +Tk++kktl  
   mKIAA0439     4    PLPRSLLEEVFLPgicDPYVKLSlyvadenrelalvQTKTIKKTL-- 48   

                   fNPvWnEesetFeFevpp..s.LeieVyDk......dfiGrvtippnnah
                    NP+WnE   +F+F v+p++++L +eV+D+++ +++df+G+v +p     
   mKIAA0439    49 -NPKWNE---EFYFRVNPsnHrLLFEVFDEnrltrdDFLGQVDVP----- 89   

                   qhsadglihlsell.ggrh.kl<-*
                            ls l++++++ +    
   mKIAA0439    90 ---------LSHLPtEDPTmER    102  

WW: domain 1 of 1, from 172 to 204: score 59.7, E = 3.6e-13
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plPpgWee  d+  Gr+YY+Nh+++ tqW +P +   
   mKIAA0439   172    PLPPGWEEKVDNL-GRTYYVNHNNRSTQWHRPSL    204  

//