hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg13527/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0090 ( 992 res) mbg13527 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF1620 Protein of unknown function (DUF1620) 591.5 5.2e-174 1 PQQ PQQ enzyme repeat 29.1 0.0001 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PQQ 1/2 48 85 .. 1 37 [] 18.1 0.21 PQQ 2/2 533 570 .. 1 37 [] 10.9 3.3 DUF1620 1/1 718 991 .. 1 304 [] 591.5 5.2e-174 Alignments of top-scoring domains: PQQ: domain 1 of 2, from 48 to 85: score 18.1, E = 0.21 *->gvvyvgtadGylyAlDakTGkvlWkfktggpvds.pvt<-* +++v+t +++ Al+ +TG++lW++ +g + + mKIAA0090 48 KKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGaVDA 85 PQQ: domain 2 of 2, from 533 to 570: score 10.9, E = 3.3 *->gvvyvgtadGylyAlDakTGkvlWkfktggpvds.pvt<-* +++ ta+G+l+ + ++G +lWk +++ + + ++ + mKIAA0090 533 KMMVTVTASGKLFGIESSSGTILWKQYLPNVKPDsSFK 570 DUF1620: domain 1 of 1, from 718 to 991: score 591.5, E = 5.2e-174 *->VhsqGrVLgDRsVlYKYlNpNLvavatvskKqgeiGsanteesvLti VhsqGrV+gDRsVlYK lNpNL+av+t+s+ ++++e+++++i mKIAA0090 718 VHSQGRVMGDRSVLYKSLNPNLLAVVTEST------DVHHERTFIGI 758 yLiDtVTGsIlhsakHqkarnllpPihlegVfsENWvVYsYfSnkkarrt +LiD+VTG+I+hs+ ++kar+ P+hl V+sENWvVY+Y+ n+karr+ mKIAA0090 759 FLIDGVTGRIIHSSVQKKARG---PVHL--VHSENWVVYQYW-NSKARRN 802 eitviELYEgsepdnkdvwssilstsnklkpvtlfdvplpivksQsYIfp e+t+ ELYEg+e++n++++ss+++++ lp+v +QsYIfp mKIAA0090 803 ELTALELYEGTEQYNATAFSSLDRPQ------------LPQVLQQSYIFP 840 hsIkalsvTiTerGITsKhiLigLpsGqIleipkaLLdpRRpvesepted +sI+a+++TiTerGITs+h+LigLpsG+Il++pkaLLdpRRp pte+ mKIAA0090 841 SSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPE--IPTEQ 888 erEEglAIPYtPeipinpnsfiThnqtVyglrgSkIiSaPSnLESTtLVf +rEE+l IPY+P++++++++fi++nqtV+++rg I++aPS+LEST+LV+ mKIAA0090 889 SREENL-IPYSPDVQVHAERFINYNQTVSRMRG--IYTAPSGLESTCLVV 935 ayGqlDlFfTRvaPSgtFDiLsddFdkvlLlitifaLlvatyitkplvsk ayG lD+++TRv+PS++FD+L+dd+d+vl++ ++f+L++at+itk+l++ mKIAA0090 936 AYG-LDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQV 984 KlLnskW<-* KlLn++W mKIAA0090 985 KLLNRAW 991 //