hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00974/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0082  ( 690 res)   mph00974

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FtsJ     FtsJ-like methyltransferase                    150.0    4.2e-41   1
WW       WW domain                                       30.3    4.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FtsJ       1/1     117   336 ..     1   216 []   150.0  4.2e-41
WW         1/1     611   641 ..     1    30 []    30.3  4.5e-05

Alignments of top-scoring domains:
FtsJ: domain 1 of 1, from 117 to 336: score 150.0, E = 4.2e-41
                   *->yRsRsafKLleinekFk.............llkpr..ngkrVlDLGA
                      + +R+a K + ++  F +  +++ ++++++llk+++  + ++ D++A
   mKIAA0082   117    FLNRAAMKMANMDFVFDrmftnpldssgkpLLKESdiDLLYFADVCA 163  

                   APGgWsQVavkrlgplck.fgetLgseeeaekgkvvavDlqpikpipgdn
                   +PGg+s++++ r+++ +k+fg tL + ++++ + +++     ++p++g+ 
   mKIAA0082   164 GPGGFSEYVLWRKKWHAKgFGMTLKGPNDFKLEDFYSASSELFEPYYGEG 213  

                   scvitlqgDitdektlakwirellgnaekkqkatvDlVlsDgapISTvLn
                      ++  gDit +++ ++  r +  ++++  +  v++V++Dg +     +
   mKIAA0082   214 --GVDGDGDITRPENINA-FRNFVLDNTDRKG--VHFVMADGGF-----S 253  

                   vtGnrdiDeyrsieLvlaaldlaEnlevLkpgGnfVvKvFrgedpetldl
                   v G+++++e++s++L l+++ +a  l v++ gG+fV+K F+ + p++  l
   mKIAA0082   254 VEGQENLQEILSKQLLLCQFLMA--LSVVRTGGHFVCKTFDLFTPFSVGL 301  

                   lnllkklFrkvkviKPpaSRpsSaEiYlVcrgfkg<-*
                   ++ll+ +F+ v+++KP  SRp+++E+Y+Vc+g k    
   mKIAA0082   302 IYLLYCCFERVCLFKPITSRPANSERYVVCKGLKV    336  

WW: domain 1 of 1, from 611 to 641: score 30.3, E = 4.5e-05
                   *->LppgWeerkd.pdGrpYYyNhnTktTqWekP<-*
                      ++++W++ ++++++r+++yN++T+++ +  P   
   mKIAA0082   611    VNEPWTMGFSkSNNRKFFYNKKTQKSVYALP    641  

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