hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mtk/mtk00386/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0053 ( 549 res) mtk00386 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RhoGAP GTPase-activator protein for Rho-like GTPase 227.6 1.1e-63 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RhoGAP 1/1 76 252 .. 1 193 [] 227.6 1.1e-63 Alignments of top-scoring domains: RhoGAP: domain 1 of 1, from 76 to 252: score 227.6, E = 1.1e-63 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. + +Pi+vekC e++ ++G +eGI+R++G+ vk+Lr+afd ge + mKIAA0053 76 HLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERp 122 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + ++++ dvh+vA+lLKlyLR+LPeP++++++ye f+ mKIAA0053 123 S-------------FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLL 159 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL + +l ++ de +++++l + ls+LP+ n+++L y++++L mKIAA0053 160 CGQL------------MNADEAKAQQELVKQLSTLPRDNYNLLSYICrFL 197 nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl ++++ + +vNkM+++NLA+v+g +L+r++ +++ + + ++++v+ ++ mKIAA0053 198 HEIQLNCAVNKMSVDNLATVIGVNLIRSKvedpaviMRGTPQIQRVMTMM 247 ienad<-* i++++ mKIAA0053 248 IRDHE 252 //