hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00386/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0053  ( 549 res)   mtk00386

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  205.9    6.2e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1      79   232 ..     1   155 []   205.9  6.2e-58

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 79 to 232: score 205.9, E = 6.2e-58
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++vekC ef+ ++G  +EGI+R++G    +k+Lr+afd ge++   
   mKIAA0053    79    PILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPS-- 123  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefiea.aaksedeeerle
                   ++++ dvh+vAslLKl+LR+LPeP+++ ++ye f++++ + + de    +
   mKIAA0053   124 FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCgQLMNADEAKAQQ 173  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   +l + l++LP+ N+++L y++++L++++ n++vNkM++ NLA+v+g +L+
   mKIAA0053   174 ELVKQLSTLPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLI 223  

                   rppdgdsad<-*
                   r++++d+a    
   mKIAA0053   224 RSKVEDPAV    232  

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