hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mnj/mnj11353/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0050  ( 158 res)   mnj11353

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                 37.4    1.9e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/3      24    53 ..     1    30 []    15.6      6.9
ANK        2/3      57    86 ..     1    30 []    16.0      5.2
ANK        3/3      90   120 ..     1    30 []     6.0  7.3e+02

Alignments of top-scoring domains:
ANK: domain 1 of 3, from 24 to 53: score 15.6, E = 6.9
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       + TpL  A + ++l  +++Ll++ga++n    
   mKIAA0050    24    GNATPLIRATAANSLLACEFLLQNGANVNQ    53   

ANK: domain 2 of 3, from 57 to 86: score 16.0, E = 5.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       Gr pLH+A   g+  ++ l+l++gad+ a   
   mKIAA0050    57    AGRGPLHHATILGHTGLACLFLKRGADLGA    86   

ANK: domain 3 of 3, from 90 to 120: score 6.0, E = 7.3e+02
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +Gr pL +A+e+ n ++v lL  ++ ++ +a   
   mKIAA0050    90    EGRDPLTIAMETTNADIVTLLRLAKMrEAEA    120  

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