hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02182/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0049  ( 915 res)   mph02182

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PB1      PB1 domain                                      65.3    1.3e-15   1
ZZ       Zinc finger, ZZ type                            10.4      0.075   1
C1_3     C1-like domain                                   6.8       0.53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PB1        1/1      13    95 ..     1    89 []    65.3  1.3e-15
C1_3       1/1     225   254 ..     1    30 []     6.8     0.53
ZZ         1/1     221   264 ..     1    46 []    10.4    0.075

Alignments of top-scoring domains:
PB1: domain 1 of 1, from 13 to 95: score 65.3, E = 1.3e-15
                   *->tvdvKlrYgggirrtfilsvsrdisfeeLrskvakrfgldvtfklkY
                      +v++ +++++++   f +s + ++++ ++ ++v+  f+l +t+++kY
   mKIAA0049    13    QVTLNVTFKNETQS-FLVSDPENTTWADVEAMVKVSFDL-NTIQIKY 57   

                   pDeDgDdlVsissDeDLeeaieeyrsllsesk.k.tLrlfvfpa<-*
                   +De++ + +si+s+ ++eea+++++      k++++L+++v+++   
   mKIAA0049    58 LDEEN-EEISINSQGEYEEALKMANI-----KqGnQLQMQVHEG    95   

C1_3: domain 1 of 1, from 225 to 254: score 6.8, E = 0.53
                   *->ktCdaCglpidgdpfYsCseC.dFvlHeeCa<-*
                        C+ C++ i g + Y Cs C+ ++++e+C    
   mKIAA0049   225    IACSHCQKRIVG-VRYQCSLCpSYNICEDCE    254  

ZZ: domain 1 of 1, from 221 to 264: score 10.4, E = 0.075
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                       +    C  C    i+gvRY C  C+ Y++C  C+    ++++    
   mKIAA0049   221    FSWHIACSHCQK-RIVGVRYQCSLCPSYNICEDCEAG-PYTHDTNH  264  

                   -*
                     
   mKIAA0049     -    -    

//