FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0015.ptfa, 313 aa vs ./tmplib.26680 library 1768704 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.4711+/-0.0036; mu= 19.2680+/- 0.242 mean_var=63.1934+/-14.389, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1613 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1072 ( 665 res) mbg06278 ( 665) 1066 257 2.1e-69 mKIAA4175 ( 360 res) mfj00074 ( 360) 310 81 1.4e-16 >>mKIAA1072 ( 665 res) mbg06278 (665 aa) initn: 1065 init1: 1065 opt: 1066 Z-score: 1338.4 bits: 256.9 E(): 2.1e-69 Smith-Waterman score: 1067; 56.026% identity (58.503% ungapped) in 307 aa overlap (3-300:134-436) 10 20 30 mKIAA0 QVPLTAQAPQWQWLVSIHAIRNTRRKMEDRHV :: . :: . .:::::.: ::::::.:: mKIAA1 EGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRR-PQIYYETSIHAIKNMRRKMEDKHV 110 120 130 140 150 160 40 50 60 70 80 90 mKIAA0 SLPAFNHLFGLSDSVHRAYFAVFDGHGGVDAARYASVHVHTNASHQPELRTNPAAALKEA .: :: ::.: :. ..::::::::::::::: :::::.:.: .: . .:: :: .: mKIAA1 CIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRA 170 180 190 200 210 220 100 110 120 130 140 150 mKIAA0 FRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQGRVVKLMEPHKP ::.::: :.::: :: :. ::::: ..: : :::::.:::::.::..:..:.::.:::: mKIAA1 FRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKP 230 240 250 260 270 280 160 170 180 190 200 210 mKIAA0 ERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDY .:.::: ::::::: : . :::::.:.:::::::. .:::. :.::.:: : :.::: mKIAA1 DREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDY 290 300 310 320 330 340 220 230 240 250 260 270 mKIAA0 LLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARDRGSHDNITVMVVFLR :.::::::.:.: :.. .: :: ...:.. .:..::: ::: :: :::::.::::: mKIAA1 LILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLR 350 360 370 380 390 400 280 290 300 310 mKIAA0 ---------EPLELLEGGVQGTGDAQADVGSQDLSTGLSELEISNTSQRS : : :.. :: .: : :.. . : mKIAA1 DMNKAVNVSEESEWTENSFQG---GQEDGGDDKETHGECKRPWPQHQCSAPADLGYEGRV 410 420 430 440 450 mKIAA1 DSFTDRTSLSPGPQINVLEDPDYLDLTQIEASKPHSTQFLPPVEMIGPGAPKKDLNELIM 460 470 480 490 500 510 >>mKIAA4175 ( 360 res) mfj00074 (360 aa) initn: 375 init1: 159 opt: 310 Z-score: 390.0 bits: 80.5 E(): 1.4e-16 Smith-Waterman score: 386; 31.734% identity (34.818% ungapped) in 271 aa overlap (15-272:93-352) 10 20 30 40 mKIAA0 QVPLTAQAPQWQWLVSIHAIRNTRRKMEDRHVSLPAFNHLFGLS :....:.. : .:::: :. : :. mKIAA4 VAEIMQNDRLGGLDVLEAEFSKTWEFKSHNVAVYSIQGRRDHMEDR------FEVLTDLA 70 80 90 100 110 50 60 70 80 90 mKIAA0 DSVHRAYFAVFDGHGGVDAARYASV--------HVHTNASHQPELRTNPAAALKEAFRLT ...: . :..:::::: ::.:.. :.. . . . . . :.. . mKIAA4 NKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSVLTYQTILEQQILSI 120 130 140 150 160 170 100 110 120 130 140 150 mKIAA0 DEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILV-QQGRVVKLMEPHKPERQ :. .:.: ..::: . ::.. : :: .:::. .: ..: .. : . ::: . mKIAA4 DREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQL 180 190 200 210 220 230 160 170 180 190 200 210 mKIAA0 DEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKP--YVSGEADAASRELTGSE-DY :. ::. :::.:. :::.: ::.::..:: : : . : . .: . .. mKIAA4 KERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEF 240 250 260 270 280 290 220 230 240 250 260 270 mKIAA0 LLLACDGFFDVVPHHEVTGLVHGHLLR-HKGNGMRIAEELVAVARDRGSHDNITVMVVFL ..:: ::..:. ..:.. ... .: . : : :. .: . :: :::::::: . mKIAA4 MILASDGLWDAFSNEEAVRFIKERLDEPHFG-----AKSIVLQSFYRGCPDNITVMVVKF 300 310 320 330 340 350 280 290 300 310 mKIAA0 REPLELLEGGVQGTGDAQADVGSQDLSTGLSELEISNTSQRS :. mKIAA4 RNSSKTEEH 360 313 residues in 1 query sequences 1768704 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:10:35 2006 done: Mon Mar 27 10:10:35 2006 Scan time: 0.530 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]