FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1089.ptfa, 1064 aa vs ./tmplib.26680 library 1767953 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.8860+/-0.00563; mu= 9.0624+/- 0.375 mean_var=166.2443+/-38.743, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0995 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0250 ( 1157 res) mbg18024 (1157) 279 53 3.3e-07 mKIAA0732 ( 972 res) mfj00235 ( 972) 250 49 5.3e-06 >>mKIAA0250 ( 1157 res) mbg18024 (1157 aa) initn: 211 init1: 146 opt: 279 Z-score: 221.7 bits: 52.8 E(): 3.3e-07 Smith-Waterman score: 279; 27.556% identity (29.665% ungapped) in 225 aa overlap (97-314:45-260) 70 80 90 100 110 120 mKIAA1 TKRLYRAVVEAVHRLDLILCNKAAYQEVFKPENV-SLRNKLRELCVKLMFLHPVDYG--R : .: . :. :..: : :.. ..:. . mKIAA0 ENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQK-MLVTDLEYALDK 20 30 40 50 60 70 130 140 150 160 170 180 mKIAA1 KAEELLWRKVYYEVIQLIKTNKKH--IHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQ :.:. :: ... . : .. . :. .:: .. : :. ::: .:: . . .. mKIAA0 KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 80 90 100 110 120 130 190 200 210 220 230 mKIAA1 LELQCCIDWTHVTDPLMGFKKPVSAS--GKEMDWAQMACHRCLVYLGDLSRYQNELAGVD ..: : . ... ... :. :.. . . .. :..:::.:::..::.:. . mKIAA0 VDLPCRVKSSQLG--IISNKQTHSSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQ-- 140 150 160 170 180 240 250 260 270 280 290 mKIAA1 TELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNL :: .: .: ...:. :.:.:::. ::.:: .. ... : : : . : .: :: mKIAA0 ----AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 190 200 210 220 230 240 300 310 320 330 340 350 mKIAA1 KRLYDKAAKMYHQLKKSETRKLSPSKKRCKDIKRLLVNFMYLQSLLQPKSSSVDSELTSL .. .:: . .:: mKIAA0 QKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQ 250 260 270 280 290 300 >>mKIAA0732 ( 972 res) mfj00235 (972 aa) initn: 273 init1: 108 opt: 250 Z-score: 200.1 bits: 48.6 E(): 5.3e-06 Smith-Waterman score: 283; 24.272% identity (26.786% ungapped) in 309 aa overlap (35-327:94-389) 10 20 30 40 50 60 mKIAA1 SQRWRPSRAGGSGGCGYSWRRQWRRQWWVAGACDQEVPSGPGTMSQGPPPGESSEPEAKV :: :. : . .: :. . :: mKIAA0 PRTPGPASQYPYAGYSPLQYPVGPTNGMYPGAYYPGYPAPSGQYVCSPLPASTMSPEEIE 70 80 90 100 110 120 70 80 90 100 110 mKIAA1 LHTKRLYRAVVEAVHRL-------DLILCNKAAYQEVFK---PENVSLRNKLRELCVKLM :.. . . . .::: .: : : . ... . ..::..: .: . . mKIAA0 QHVRNMQQ---QELHRLLRVADNQELQLSNLLSRDRISTEGMEKMAQLRTELLQLYERCI 130 140 150 160 170 180 120 130 140 150 160 170 mKIAA1 FLHPVDYG--RKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTH--LVAGIGFYQ .: .... ......::....:.::. .. : .:.. . : : : :.. mKIAA0 LLD-IEFSDSQNVDQILWKNAFYQVIEKFRQLLKDPNSENPEQIRNRLLELLDEGSDFFD 190 200 210 220 230 180 190 200 210 220 230 mKIAA1 HLLLYIQSHYQLELQCCIDWTHVTDPLMGFKKPVSASGKEMDWAQMACHRCLVYLGDLSR :: .: :...:. :. : : .::. : . .: .. .: .. ::.:: mKIAA0 SLLQKLQVTYKFKLE---DYM---DGLAIRSKPLR---KTVKYALISAQRSMICQGDISR 240 250 260 270 280 290 240 250 260 270 280 290 mKIAA1 YQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEV :... . . :. .: .: .::. : :.:::. :: ...:.: :.: . . mKIAA0 YREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASN 300 310 320 330 340 350 300 310 320 330 340 mKIAA1 SFEGAYGNLKRLYDKAAKMYHQLKKS--ETRKLSPSKKRCKDIKRLLVNFMYLQSLLQPK . : .: :.... . .:..:. : .::.: : mKIAA0 PILTAKESLMSLFEETKRKAEQMEKKQHEEFDMSPDKWRKGKKSTFRHVGDDTTRLEIWI 360 370 380 390 400 410 350 360 370 380 390 400 mKIAA1 SSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLGLTNEDEEECESGYAFLPDLLIFQMAII mKIAA0 HPSHSRSAQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAE 420 430 440 450 460 470 1064 residues in 1 query sequences 1767953 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:49 2006 done: Mon Mar 27 10:35:50 2006 Scan time: 1.080 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]