FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1113.ptfa, 1071 aa vs ./tmplib.26680 library 1767946 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.5092+/-0.00976; mu= -10.9703+/- 0.649 mean_var=508.1253+/-119.826, 0's: 0 Z-trim: 12 B-trim: 0 in 0/36 Lambda= 0.0569 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0298 ( 208 res) mbg08362 ( 208) 563 61 2.6e-10 mKIAA0314 ( 886 res) mbg04168 ( 886) 309 41 0.0013 mKIAA1696 ( 675 res) mpm12224 ( 675) 278 38 0.0063 >>mKIAA0298 ( 208 res) mbg08362 (208 aa) initn: 521 init1: 424 opt: 563 Z-score: 277.4 bits: 60.7 E(): 2.6e-10 Smith-Waterman score: 571; 45.161% identity (48.276% ungapped) in 186 aa overlap (887-1060:1-186) 860 870 880 890 900 910 mKIAA1 GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKG-KT :.::.::.. .::.::::.: .... : .. mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV 10 20 30 920 930 940 950 960 970 mKIAA1 AQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPVSIPNYYKIIKKPMDLSTVKKKLQKKH ::: ::.:::.:.: : :. ::. :.::: .::.:::.::::: ...::::: mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 40 50 60 70 80 90 980 990 1000 1010 1020 1030 mKIAA1 SQHYQIPDDFVADVRLIFKNCERFNEGDSEVAKAGKAVALYFEDKLSEIYSDRTFTPLPE :: :.. :.::::.: :: .:: :::::.::. . ..:: :.::: :. :. . mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 100 110 120 130 140 150 1040 1050 1060 1070 mKIAA1 FEQDEDD--GEVTEDSDEDF---------IQPRRKRLKSDERPVHIK ..: .: :: .. . : :::.:.: mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV 160 170 180 190 200 >>mKIAA0314 ( 886 res) mbg04168 (886 aa) initn: 469 init1: 140 opt: 309 Z-score: 157.3 bits: 40.5 E(): 0.0013 Smith-Waterman score: 370; 23.724% identity (31.911% ungapped) in 725 aa overlap (468-1028:180-882) 440 450 460 470 480 490 mKIAA1 LVIESKPAPGYTPNVVVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMR : . . ..:. ::.:. . .: : mKIAA0 TSTPSSARASVKRELTGSNASTSPARSRGRPRKPKPGSLQPQHLQSTIRECDSEQAQT-- 150 160 170 180 190 200 500 510 520 530 540 550 mKIAA1 LQQPPAPIPTTTATTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAF-------QAH : : : : : :: : . .. . . : .:. :. ... .:: :.: mKIAA0 -QVHPEPQPQLQAPTQPHLQPSSGFLEPEGSP--FSLGQSQH-DLSQSAFLSWLSQTQSH 210 220 230 240 250 260 560 570 580 590 600 mKIAA1 QMRLAQNAARIPGIPRH--SAPQYSMMQPHLQRQHSNPGHAGPFPVVSAHNPINPTSPTT . :.... . : . :::. :. .:. .. .: :: ::. ::. : . ..:: mKIAA0 NSLLSSSVLTPDSSPGKLDSAPSQSLEEPEPDEAQSCPGPQGPWFNFSAQIPCD-AAPTP 270 280 290 300 310 320 610 620 630 640 650 660 mKIAA1 ATMANANRGPTSPSVTAIELIPSVTNPENLPSLPD-IPPIQLEDAGSSSLDNLLSRYISG .. .. :: :: ..:. : ..: : :. . :.:: .:. : . . .:: mKIAA0 PPAVSEDQ-PT-PS---LQLLAS-SKPMNTPGAANPCSPVQL---SSTHLPGGTPKRLSG 330 340 350 360 370 670 680 690 700 mKIAA1 S--HLPPQPTSTMNPS----PGPSAL-----SPGSSGLSNSHTP---------VRPPSTS . .. .::. .:. : :: . . . :. . : .: : : mKIAA0 DSEEMSQSPTGLGQPKRRGRP-PSKFFKQVEQHYLTQLTAQPIPPEMCSGWWWIRDPETL 380 390 400 410 420 430 710 720 730 740 750 mKIAA1 STGSRGSCGSSGRTAEKSAHSFKSDQVKVKQE----------------PGTEEEICSFSG .. .. . : ::. :. : . :: :. :: . :.: mKIAA0 DVLLKALHPRGIR--EKALHKHLSKHKDFLQEVCLQPLTDPIFEPNELPALEEGVMSWSP 440 450 460 470 480 490 760 770 mKIAA1 AVKQEKTE-----------------------------DGRR---SAC--MLSSPES---- : .:. :. : . : . .:::. mKIAA0 KEKTYETDLAVLQWVEELEQRVVLSDLQIRGWTCPTPDSTREDLTYCEHLPDSPEDIPWR 500 510 520 530 540 550 780 790 800 810 820 mKIAA1 -----SLTPPLSTNLHLESELDTLTGLENHVKT----EPT-DISESCKQSGLSNLVNGK- . .: ..: :. . :. ::..:. :: : ...: . :: mKIAA0 GRGREGTVPQRQNNNPLDLAVMRLAVLEQNVERRYLREPLWAAHEVVVEKALLSTPNGAP 560 570 580 590 600 610 830 840 850 mKIAA1 -----------SP----IRNLMHR---SARIG---GDGNSK---DDDPNEDWCAVCQNGG .: :. ..: .:.. :. . . . . :. : ::..: mKIAA0 DGTSTEISYEITPRVRVWRQTLERCRSAAQVCLCMGQLERSIAWEKSVNKVTCLVCRKGD 620 630 640 650 660 670 860 870 880 890 mKIAA1 D---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC--------------------RDI . :: :. : . :. :: : . . : :::.:. : : mKIAA0 NDEFLLLCDGCDRGCHIYCHRPKMEAVPEGDWFCAVCLSQVEEEYTQRPGFPKRGQKRKS 680 690 700 710 720 730 900 910 920 930 mKIAA1 GKPEVEYDCDN----MQHSKKGKTA-----QGLSPVDQRK------------CERLLLYL . : . . :. ...:. . .. .:::: .:. :: .:. . mKIAA0 SFPLTFPEGDSRRRMLSRSRDSPAVPRYPEDGLSPPKRRRHSMRSHHSDLTFCEIILMEM 740 750 760 770 780 790 940 950 960 970 980 990 mKIAA1 YCHELSIEFQEPV-PVSIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIF :. . : ::: : . .: ..::.:::.::....: . : ..:.::. :.: mKIAA0 ESHDAAWPFLEPVNPRLVSGYRRVIKNPMDFSTMRERLLRGG---YTSSEEFAADALLVF 800 810 820 830 840 1000 1010 1020 1030 1040 1050 mKIAA1 KNCERFNEGDSEVAKAGKAVALYFEDKLSEIYSDRTFTPLPEFEQDEDDGEVTEDSDEDF ::. ::: ::::.:::... .::.. :.:. . mKIAA0 DNCQTFNEDDSEVGKAGHVMRRFFESRWEEFYQGKQANL 850 860 870 880 1060 1070 mKIAA1 IQPRRKRLKSDERPVHIK >>mKIAA1696 ( 675 res) mpm12224 (675 aa) initn: 284 init1: 201 opt: 278 Z-score: 144.9 bits: 37.9 E(): 0.0063 Smith-Waterman score: 309; 22.737% identity (25.532% ungapped) in 475 aa overlap (451-894:77-530) 430 440 450 460 470 mKIAA1 FHCDPTFWAKNVVNLGNLVIESKPAPGYTPNVVVGQVPPGTNHI---SKTPGQINLAQLR :..: : : .: :.. .... :: . mKIAA1 ADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLSQSENKLQTAQQQ 50 60 70 80 90 100 480 490 500 510 520 530 mKIAA1 -LQHMQQQ--VYAQKHQQLQQMRLQQPPAPIPTTTATTQQHPRQAAPQMLQQQPPRLISV :: .::: :..:: ::.. :: : :. ::. :. .: .. . : .... mKIAA1 PLQPLQQQQPQQPQQQQQQQQQHAQQSAAAPPSLTAS--QKTVTTASMITTKTLPLVLKA 110 120 130 140 150 160 540 550 560 570 580 590 mKIAA1 QTMQRGNMNCGAFQAHQMRLAQNAAR-IPGIPRHSAPQYSMMQPHLQRQHSNPGHAGPFP : : . : : :. . . . ...: .. . . . ..:: : mKIAA1 ATATMPASVVGQRPTIAMVTAINSQKAVLSTDVQNTP----VNLQTSSKVTGPG-AEAVQ 170 180 190 200 210 600 610 620 630 640 mKIAA1 VVSAHN---PINPTSPTTATMANANRGPT-SPSVTAIELI-PSVTNPENLPSLPDIPPIQ .:. .. .. : : . . : .: . . . :. . .:.: : ::. mKIAA1 IVAKNTVTLQVQATPPQPIKVPQFIPPPRLTPRPNFLPQVRPKPVAQNNIPIAPAPPPML 220 230 240 250 260 270 650 660 670 680 690 700 mKIAA1 LEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSS . .:..: . ... : : . : : . :... . :. .. mKIAA1 -------AAPQLIQRPVMLTKFTPTTLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTSIV 280 290 300 310 320 330 710 720 730 740 750 mKIAA1 TGSRGSCGSSGRTAEKSAHSFKSD------QVKVKQEPGTE---EEICSFSGAVKQEKTE .. :. .. .:.. : :.... : : :: :. ::: : :.. : mKIAA1 IATPGTRLAGPQTVQLSKPSLEKQLNPTQKQRKNKQGLVTHDHLEEIQSKRQERKRRTTA 340 350 360 370 380 390 760 770 780 790 800 mKIAA1 DGRRSACMLSSPE--SSLTPPLSTNLHLES-------ELDTLTGLENHVKTEP-TDISES . :. .. :: .: . :....: . . ... :. . : : .. .: mKIAA1 NPVYSGAVFE-PERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPPSSHPDS 400 410 420 430 440 450 810 820 830 840 850 860 mKIAA1 CKQSGLSNLVNGKSPIRNLMHRSARIGGDGNSKDDDPNEDWCAVCQNGGDLLCCEKCPKV .. . . .:.. . : .: : : .::.:.::...:.:: :. : .: mKIAA1 PENEKTETTFTFPAPVQPVSLPSP------TSTDGDIHEDFCSVCRKSGQLLMCDTCSRV 460 470 480 490 500 870 880 890 900 910 920 mKIAA1 FHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTAQGLSPVDQRKCER .:: : : : ..:.: ::: :.: mKIAA1 YHLDCLEPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKL 510 520 530 540 550 560 1071 residues in 1 query sequences 1767946 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:36:27 2006 done: Mon Mar 27 10:36:28 2006 Scan time: 1.050 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]