FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4059.ptfa, 219 aa
 vs ./tmplib.26680 library

1768798 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.8148+/-0.00513; mu= 1.0142+/- 0.342
 mean_var=129.8295+/-30.125, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1126

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0363  ( 1445 res)   mfj63136                  (1445)  765  135 1.5e-32


>>mKIAA0363  ( 1445 res)   mfj63136                       (1445 aa)
 initn: 542 init1: 542 opt: 765  Z-score: 677.0  bits: 135.1 E(): 1.5e-32
Smith-Waterman score: 765;  62.273% identity (64.929% ungapped) in 220 aa overlap (7-219:1228-1445)

                                       10        20        30      
mKIAA4                         SPHKMPGEATETVPATEQELPQPQAETGSGTESDSD
                                     ::..  .       :. :   ::: .:.: 
mKIAA0 EFPALEQKDEDSLEEDAQRAPGSGQRWESHGESSSELDEYLAPPPDAQRTPGSGQRSESH
      1200      1210      1220      1230      1240      1250       

          40         50        60        70        80        90    
mKIAA4 -ESVPELEEQD-STQTATQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTG
        ::  :: ::: : : .   ::  :..  .:: ..::::::::::::::::::::::. :
mKIAA0 GESSSELGEQDLSPQKSQCPAQGPAGS--NEETIAKAKQSRSEKKARKAMSKLGLRQIQG
      1260      1270      1280        1290      1300      1310     

          100       110       120       130       140       150    
mKIAA4 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAV
       :::.::.:::::::::.::::.::::::::.:::::::::::::.. :::::::: .:  
mKIAA0 VTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPS
        1320      1330      1340      1350      1360      1370     

          160       170            180       190       200         
mKIAA4 SNIQENTQTPTVQEESEE-----EEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSND
       . . : .  : :. : ::     :::.:.:.: .::::::.::::.:::::::::.: .:
mKIAA0 ALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSD
        1380      1390      1400      1410      1420      1430     

     210         
mKIAA4 IVNAIMELTM
       ::::::::::
mKIAA0 IVNAIMELTM
        1440     




219 residues in 1 query   sequences
1768798 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:00:38 2006 done: Mon Mar 27 11:00:38 2006
 Scan time:  0.440 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]