FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0363.ptfa, 1445 aa
 vs ./tmplib.26680 library

1767572 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.1784+/-0.00765; mu= -8.0980+/- 0.504
 mean_var=451.5395+/-113.081, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0604

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4059  ( 219 res)   mpk01276                   ( 219)  765   81 2.5e-16


>>mKIAA4059  ( 219 res)   mpk01276                        (219 aa)
 initn: 542 init1: 542 opt: 765  Z-score: 385.5  bits: 81.2 E(): 2.5e-16
Smith-Waterman score: 765;  62.273% identity (64.929% ungapped) in 220 aa overlap (1228-1445:7-219)

      1200      1210      1220      1230      1240      1250       
mKIAA0 EFPALEQKDEDSLEEDAQRAPGSGQRWESHGESSSELDEYLAPPPDAQRTPGSGQRSESH
                                     ::..  .       :. :   ::: .:.: 
mKIAA4                         SPHKMPGEATETVPATEQELPQPQAETGSGTESDSD
                                       10        20        30      

      1260      1270      1280        1290      1300      1310     
mKIAA0 GESSSELGEQDLSPQKSQCPAQGPAGS--NEETIAKAKQSRSEKKARKAMSKLGLRQIQG
        ::  :: ::: : : .   ::  :..  .:: ..::::::::::::::::::::::. :
mKIAA4 -ESVPELEEQD-STQTATQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTG
          40         50        60        70        80        90    

        1320      1330      1340      1350      1360      1370     
mKIAA0 VTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPS
       :::.::.:::::::::.::::.::::::::.:::::::::::::.. :::::::: .:  
mKIAA4 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAV
          100       110       120       130       140       150    

        1380      1390      1400      1410      1420      1430     
mKIAA0 ALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSD
       . . : .  : :. : ::     :::.:.:.: .::::::.::::.:::::::::.: .:
mKIAA4 SNIQENTQTPTVQEESEE-----EEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSND
          160       170            180       190       200         

        1440     
mKIAA0 IVNAIMELTM
       ::::::::::
mKIAA4 IVNAIMELTM
     210         




1445 residues in 1 query   sequences
1767572 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:18:54 2006 done: Mon Mar 27 10:18:55 2006
 Scan time:  1.250 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]