FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0612.ptfa, 353 aa vs ./tmplib.26680 library 1768664 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.5653+/-0.0064; mu= 3.1044+/- 0.426 mean_var=199.5286+/-46.432, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0908 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0318 ( 884 res) mbg14966 ( 884) 503 78 2.5e-15 mKIAA1666 ( 1139 res) mbp08305 (1139) 288 50 8.9e-07 >>mKIAA0318 ( 884 res) mbg14966 (884 aa) initn: 673 init1: 445 opt: 503 Z-score: 367.6 bits: 77.8 E(): 2.5e-15 Smith-Waterman score: 654; 42.014% identity (49.388% ungapped) in 288 aa overlap (55-335:592-843) 30 40 50 60 70 80 mKIAA0 GASARPSTVGVSGTSARLGQAPGEEFCAPVLMCCLRCRRGQSRGVWATTEDSVSPLPSVA :. .. . : : .:...... : . . mKIAA0 QPHCCHGDEYHTESSRGSDLSDIMEEDEEELYSEMQLEDGGRRRPSGTSHNALKILGNST 570 580 590 600 610 620 90 100 110 120 130 mKIAA0 LSLQATETGE-SRGQDNSGRRGPQRRGARVPR----SGTTELAPP--RSPQEAPPHQDLP : .: . . :: ..:: . ..: : .: .: .:.: . : ..:: mKIAA0 LMGRADRMEHVSRRYSHSGGGSHRHRPAMAPSIDEYTGRDHLSPDFYDESETDPGAEELP 630 640 650 660 670 680 140 150 160 170 180 190 mKIAA0 VRVFVALFDYDPVSMSPNPDAGEEELPFKEGQLLKVFGDKDADGFYRGESGGRTGYIPCN .:.:::::::::..:::::::.::::::::::..::.::::::::::::. .: : :::: mKIAA0 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCN 690 700 710 720 730 740 200 210 220 230 240 250 mKIAA0 MVAEVAVDSPAGRQQLLQRGFLPPNVLTEASGNGPSVYSSAHTPGPPPKPRRSKKVELEG ::.:. .:. .:::..:::: :. : : .::.. : mKIAA0 MVSEIHADDEEMMDQLLRQGFLPLNT-------------------PVEKIERSRR---SG 750 760 770 260 270 280 290 300 310 mKIAA0 PTQLCPGPPKLIHSAAQKTSRPMVAAFDYNPRENSPNMDVEAELPFRAGDVITVFGNMDD . : .: ::: .::.:::.:::.:::::::: .::.:::::..:. mKIAA0 RGHSVP-------------TRRMVALYDYDPRESSPNVDVEAELPFCTGDIITVFGEIDE 780 790 800 810 820 320 330 340 350 mKIAA0 DGFYYVRSSWGKEGVLCSGSPAGHAYGQTFLAEGWR ::::: . . :..:.. :. mKIAA0 DGFYYGELN-GQKGLVPSNFLEEVPDDVEVHLSDAPPHYSHDPPMRSKAKRKKSVHFTP 830 840 850 860 870 880 >>mKIAA1666 ( 1139 res) mbp08305 (1139 aa) initn: 424 init1: 263 opt: 288 Z-score: 214.0 bits: 49.8 E(): 8.9e-07 Smith-Waterman score: 418; 36.759% identity (43.662% ungapped) in 253 aa overlap (82-322:892-1116) 60 70 80 90 100 110 mKIAA0 APVLMCCLRCRRGQSRGVWATTEDSVSPLPSVALSLQATETGESRGQDNSGRRGPQRRGA .. :. :.:: :.: :... : ::.:. mKIAA1 NQYAPMVPPHQQGSSQCQPADFHHVFEEKEALCLDSQGTEKPEQR--KNKSQNG-QRQGT 870 880 890 900 910 120 130 140 150 160 mKIAA0 RVPRSGTTELAP-PR---------SPQEAPPHQDLPVRVFVALFDYDPVSMSPNPDAGEE . . : : : ::.. . :::::.::::..:. .: : .:.:: mKIAA1 PGSKRECSVLCPAPTNKVIKMTSGSPDQLETDANNPVRVFLALFDHSPLVISVNSEAAEE 920 930 940 950 960 970 170 180 190 200 210 220 mKIAA0 ELPFKEGQLLKVFGDKDADGFYRGESGGRTGYIPCNMVAEVAVDSPAGRQQLLQRGFLPP :: :..::::.:.:. : :::.:: .:. : :: ..:.:: : : :: : :: mKIAA1 ELAFQKGQLLRVWGSLDLHGFYHGECNGHLGKIPGHLVVEVEV----GTQQTDGRWHLP- 980 990 1000 1010 1020 1030 230 240 250 260 270 mKIAA0 NVLTEASGNGPSVYSSAHTPGPPPKPRRSKKVELEGPT--QLCPGPPKLIHSAAQKTSRP :.:. : .... .::: : : : .. . : . mKIAA1 -----AQGHLLS---------------ETQREDLEGLTNSQGSYMPQGNSRTPTLWTPKT 1040 1050 1060 1070 280 290 300 310 320 330 mKIAA0 MVAAFDYNPRENSPNMDVEAELPFRAGDVITVFGNMDDDGFYYVRSSWGKEGVLCSGSPA ::::.::.::.. .......: .:::::.::.: .:: :::: mKIAA1 MVAALDYDPRDGRAGVQAKGKLVLRAGDVVTVYGPVDDKGFYYGEYGGHRGLVPAHLLDD 1080 1090 1100 1110 1120 1130 340 350 mKIAA0 GHAYGQTFLAEGWR mKIAA1 LPVHGE 353 residues in 1 query sequences 1768664 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:24:21 2006 done: Mon Mar 27 10:24:21 2006 Scan time: 0.570 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]