FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0144.ptfa, 496 aa
 vs ./tmplib.26680 library

1768521 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 13.1335+/-0.00834; mu= -28.0362+/- 0.550
 mean_var=432.4564+/-104.072, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0617

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1491  ( 393 res)   mpj01010                   ( 393)  967  100 3.4e-22


>>mKIAA1491  ( 393 res)   mpj01010                        (393 aa)
 initn: 757 init1: 411 opt: 967  Z-score: 490.8  bits: 100.0 E(): 3.4e-22
Smith-Waterman score: 967;  60.938% identity (64.730% ungapped) in 256 aa overlap (241-494:4-246)

              220       230       240       250       260          
mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTV-SAPPP
                                     :.:::: :    ::..::...... :::  
mKIAA1                            PHTHASVESTA----SSAAFSAAATSAPSAPSS
                                          10            20         

     270       280       290       300       310       320         
mKIAA0 VVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPG
        : . .:... ::: :.  . :. ..:::... .:::::::::: :::::: : :...::
mKIAA1 GVVLPGSMSTVSSLCLGGTTVSVPSSSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPG
      30        40        50        60        70        80         

      330       340       350       360       370       380        
mKIAA0 -LLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGR
        :: :::  .::::.:::::.:.:.:::.::: .::. :..:::.::.::::::.:::::
mKIAA1 GLLPAYP--IYGYDELQMLQSRLPMDYYGIPFAAPTA-LASRDGNLANNPYSGDVTKFGR
      90         100       110       120        130       140      

      390       400       410       420       430       440        
mKIAA0 GDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYG
       ::..:::: :: :: ::.:.:::::.:: ::::.::::::::.::::::::   :.::::
mKIAA1 GDSASPAPPTTPAQAQQSQSQTHHTAQQPFLNPGLPPGYSYTGLPYYTGVP---SAFQYG
        150       160       170       180       190          200   

      450       460       470       480       490                  
mKIAA0 PAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA            
       :..: : :::.::::: .:.    ::::: ::::.:.:.::   ::              
mKIAA1 PTMF-VPPTSAKQHGVALST--PPTPFQQASGYGQHAYSTGYDDLTQGTAAGDYTKGGYG
            210       220         230       240       250       260

mKIAA1 GSSQAPNKSTGSGPGKGVSVSSGTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSALG
              270       280       290       300       310       320




496 residues in 1 query   sequences
1768521 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:06 2006 done: Mon Mar 27 10:13:07 2006
 Scan time:  0.730 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]