# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh03821.fasta.nr -Q ../query/mKIAA0144.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0144, 496 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7906798 sequences Expectation_n fit: rho(ln(x))= 7.2401+/-0.000205; mu= 1.4215+/- 0.011 mean_var=143.1819+/-26.831, 0's: 32 Z-trim: 77 B-trim: 104 in 1/63 Lambda= 0.107184 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148683223|gb|EDL15170.1| ubiquitin associated p ( 983) 3122 494.6 5.1e-137 gi|26327735|dbj|BAC27611.1| unnamed protein produc ( 983) 3122 494.6 5.1e-137 gi|26353768|dbj|BAC40514.1| unnamed protein produc (1014) 3122 494.6 5.2e-137 gi|26348275|dbj|BAC37777.1| unnamed protein produc (1015) 3122 494.6 5.2e-137 gi|148683228|gb|EDL15175.1| ubiquitin associated p (1067) 3119 494.1 7.5e-137 gi|23271826|gb|AAH23906.1| Ubiquitin associated pr (1067) 3119 494.1 7.5e-137 gi|148683227|gb|EDL15174.1| ubiquitin associated p (1093) 3119 494.1 7.7e-137 gi|22135657|gb|AAH29075.1| Ubiquitin associated pr (1105) 3119 494.1 7.7e-137 gi|81895299|sp|Q80X50.1|UBP2L_MOUSE RecName: Full= (1107) 3119 494.1 7.7e-137 gi|26339248|dbj|BAC33295.1| unnamed protein produc (1112) 3119 494.1 7.8e-137 gi|148683226|gb|EDL15173.1| ubiquitin associated p (1112) 3119 494.1 7.8e-137 gi|27764461|gb|AAO23026.1|AF276967_1 lingerer prot ( 983) 3112 493.0 1.5e-136 gi|149048023|gb|EDM00599.1| rCG62582, isoform CRA_ ( 758) 3110 492.6 1.5e-136 gi|149048025|gb|EDM00601.1| rCG62582, isoform CRA_ (1068) 3110 492.7 2e-136 gi|149048024|gb|EDM00600.1| rCG62582, isoform CRA_ (1105) 3110 492.7 2e-136 gi|27764459|gb|AAO23025.1|AF276966_1 lingerer prot (1035) 3109 492.6 2.1e-136 gi|109016602|ref|XP_001113770.1| PREDICTED: ubiqui ( 984) 3101 491.3 4.9e-136 gi|194381080|dbj|BAG64108.1| unnamed protein produ ( 897) 3077 487.6 5.9e-135 gi|194382780|dbj|BAG64560.1| unnamed protein produ ( 976) 3077 487.6 6.3e-135 gi|109016589|ref|XP_001113998.1| PREDICTED: ubiqui ( 983) 3077 487.6 6.4e-135 gi|119573603|gb|EAW53218.1| ubiquitin associated p ( 994) 3077 487.6 6.4e-135 gi|119573599|gb|EAW53214.1| ubiquitin associated p (1044) 3074 487.2 9.2e-135 gi|109016586|ref|XP_001113924.1| PREDICTED: ubiqui (1068) 3074 487.2 9.4e-135 gi|119573598|gb|EAW53213.1| ubiquitin associated p (1080) 3074 487.2 9.4e-135 gi|109016580|ref|XP_001113896.1| PREDICTED: ubiqui (1084) 3074 487.2 9.5e-135 gi|109016583|ref|XP_001113973.1| PREDICTED: ubiqui (1087) 3074 487.2 9.5e-135 gi|109940042|sp|Q14157.2|UBP2L_HUMAN RecName: Full (1087) 3074 487.2 9.5e-135 gi|119573604|gb|EAW53219.1| ubiquitin associated p (1098) 3074 487.2 9.6e-135 gi|109016577|ref|XP_001113948.1| PREDICTED: ubiqui (1104) 3074 487.2 9.6e-135 gi|119936035|gb|ABM06060.1| ubiquitin associated p ( 983) 3069 486.4 1.5e-134 gi|13111995|gb|AAH03170.1| Ubiquitin associated pr (1087) 3068 486.2 1.8e-134 gi|194380260|dbj|BAG63897.1| unnamed protein produ (1078) 3066 485.9 2.2e-134 gi|151556338|gb|AAI48080.1| UBAP2L protein [Bos ta ( 983) 3061 485.1 3.5e-134 gi|73961024|ref|XP_865225.1| PREDICTED: similar to ( 983) 3023 479.3 2.1e-132 gi|73961038|ref|XP_865344.1| PREDICTED: similar to ( 994) 3023 479.3 2.1e-132 gi|73961042|ref|XP_865378.1| PREDICTED: similar to (1014) 3023 479.3 2.1e-132 gi|73961022|ref|XP_865209.1| PREDICTED: similar to (1087) 3020 478.8 3.1e-132 gi|73961032|ref|XP_865295.1| PREDICTED: similar to (1104) 3020 478.8 3.1e-132 gi|73961030|ref|XP_852225.1| PREDICTED: similar to (1107) 3020 478.8 3.1e-132 gi|126307600|ref|XP_001366254.1| PREDICTED: simila (1068) 3003 476.2 1.9e-131 gi|126307598|ref|XP_001366202.1| PREDICTED: simila (1088) 3003 476.2 1.9e-131 gi|126307596|ref|XP_001366080.1| PREDICTED: simila (1106) 3003 476.2 1.9e-131 gi|126307602|ref|XP_001366142.1| PREDICTED: simila (1107) 3003 476.2 1.9e-131 gi|73961036|ref|XP_865328.1| PREDICTED: similar to ( 479) 2878 456.6 6.7e-126 gi|224084050|ref|XP_002189517.1| PREDICTED: ubiqui (1087) 2828 449.1 2.7e-123 gi|118102176|ref|XP_423817.2| PREDICTED: similar t ( 991) 2814 446.9 1.1e-122 gi|74189503|dbj|BAE36765.1| unnamed protein produc ( 508) 2394 381.8 2.4e-103 gi|11991481|emb|CAB65101.2| NICE-4 protein [Homo s ( 398) 1938 311.2 3.3e-82 gi|76661353|ref|XP_869509.1| PREDICTED: similar to ( 441) 1936 310.9 4.4e-82 gi|26331464|dbj|BAC29462.1| unnamed protein produc ( 389) 1780 286.7 7.3e-75 >>gi|148683223|gb|EDL15170.1| ubiquitin associated prote (983 aa) initn: 3223 init1: 3122 opt: 3122 Z-score: 2616.2 bits: 494.6 E(): 5.1e-137 Smith-Waterman score: 3122; 99.796% identity (100.000% similar) in 490 aa overlap (1-490:480-969) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|148 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 690 700 710 720 730 740 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 750 760 770 780 790 800 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 810 820 830 840 850 860 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 870 880 890 900 910 920 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA :::::::::::::::::::::::::::::::::::::::. gi|148 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES 930 940 950 960 970 980 >>gi|26327735|dbj|BAC27611.1| unnamed protein product [M (983 aa) initn: 3223 init1: 3122 opt: 3122 Z-score: 2616.2 bits: 494.6 E(): 5.1e-137 Smith-Waterman score: 3122; 99.796% identity (100.000% similar) in 490 aa overlap (1-490:480-969) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|263 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 690 700 710 720 730 740 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 750 760 770 780 790 800 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 810 820 830 840 850 860 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 870 880 890 900 910 920 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA :::::::::::::::::::::::::::::::::::::::. gi|263 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES 930 940 950 960 970 980 >>gi|26353768|dbj|BAC40514.1| unnamed protein product [M (1014 aa) initn: 3231 init1: 3122 opt: 3122 Z-score: 2616.0 bits: 494.6 E(): 5.2e-137 Smith-Waterman score: 3122; 99.796% identity (100.000% similar) in 490 aa overlap (1-490:511-1000) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|263 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 490 500 510 520 530 540 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 550 560 570 580 590 600 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 610 620 630 640 650 660 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 670 680 690 700 710 720 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 730 740 750 760 770 780 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 790 800 810 820 830 840 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 850 860 870 880 890 900 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 910 920 930 940 950 960 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA :::::::::::::::::::::::::::::::::::::::. gi|263 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES 970 980 990 1000 1010 >>gi|26348275|dbj|BAC37777.1| unnamed protein product [M (1015 aa) initn: 3231 init1: 3122 opt: 3122 Z-score: 2616.0 bits: 494.6 E(): 5.2e-137 Smith-Waterman score: 3122; 99.796% identity (100.000% similar) in 490 aa overlap (1-490:512-1001) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|263 LPRLLLWPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 490 500 510 520 530 540 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 550 560 570 580 590 600 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 610 620 630 640 650 660 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 670 680 690 700 710 720 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 730 740 750 760 770 780 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 790 800 810 820 830 840 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 850 860 870 880 890 900 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 910 920 930 940 950 960 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA :::::::::::::::::::::::::::::::::::::::. gi|263 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES 970 980 990 1000 1010 >>gi|148683228|gb|EDL15175.1| ubiquitin associated prote (1067 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.2 bits: 494.1 E(): 7.5e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:480-968) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|148 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 690 700 710 720 730 740 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 750 760 770 780 790 800 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 810 820 830 840 850 860 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 870 880 890 900 910 920 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|148 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 930 940 950 960 970 980 gi|148 QSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHH 990 1000 1010 1020 1030 1040 >>gi|23271826|gb|AAH23906.1| Ubiquitin associated protei (1067 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.2 bits: 494.1 E(): 7.5e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:480-968) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|232 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 690 700 710 720 730 740 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 750 760 770 780 790 800 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 810 820 830 840 850 860 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|232 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 870 880 890 900 910 920 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|232 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 930 940 950 960 970 980 gi|232 QSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHH 990 1000 1010 1020 1030 1040 >>gi|148683227|gb|EDL15174.1| ubiquitin associated prote (1093 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.1 bits: 494.1 E(): 7.7e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:449-937) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|148 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 420 430 440 450 460 470 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 480 490 500 510 520 530 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 540 550 560 570 580 590 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 600 610 620 630 640 650 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 660 670 680 690 700 710 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 720 730 740 750 760 770 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 780 790 800 810 820 830 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 840 850 860 870 880 890 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|148 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 900 910 920 930 940 950 gi|148 QQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHH 960 970 980 990 1000 1010 >>gi|22135657|gb|AAH29075.1| Ubiquitin associated protei (1105 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.0 bits: 494.1 E(): 7.7e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:500-988) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|221 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 530 540 550 560 570 580 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 590 600 610 620 630 640 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 650 660 670 680 690 700 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 710 720 730 740 750 760 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 770 780 790 800 810 820 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 830 840 850 860 870 880 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 890 900 910 920 930 940 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|221 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 950 960 970 980 990 1000 gi|221 QQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHH 1010 1020 1030 1040 1050 1060 >>gi|81895299|sp|Q80X50.1|UBP2L_MOUSE RecName: Full=Ubiq (1107 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.0 bits: 494.1 E(): 7.7e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:500-988) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|818 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 530 540 550 560 570 580 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 590 600 610 620 630 640 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 650 660 670 680 690 700 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 710 720 730 740 750 760 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 770 780 790 800 810 820 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 830 840 850 860 870 880 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 890 900 910 920 930 940 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|818 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 950 960 970 980 990 1000 gi|818 QQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHH 1010 1020 1030 1040 1050 1060 >>gi|26339248|dbj|BAC33295.1| unnamed protein product [M (1112 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 2613.0 bits: 494.1 E(): 7.8e-137 Smith-Waterman score: 3119; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:505-993) 10 20 30 mKIAA0 PAQQKLKQQKKKTSLTSKIPALAVEMPGSA :::::::::::::::::::::::::::::: gi|263 PPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSA 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA0 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQES 540 550 560 570 580 590 100 110 120 130 140 150 mKIAA0 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQL 600 610 620 630 640 650 160 170 180 190 200 210 mKIAA0 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHTEEIPNTT 660 670 680 690 700 710 220 230 240 250 260 270 mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPV 720 730 740 750 760 770 280 290 300 310 320 330 mKIAA0 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL 780 790 800 810 820 830 340 350 360 370 380 390 mKIAA0 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGD 840 850 860 870 880 890 400 410 420 430 440 450 mKIAA0 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPA 900 910 920 930 940 950 460 470 480 490 mKIAA0 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA ::::::::::::::::::::::::::::::::::::::: gi|263 VFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKT 960 970 980 990 1000 1010 gi|263 QQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHH 1020 1030 1040 1050 1060 1070 496 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 01:49:17 2009 done: Fri Mar 13 01:56:20 2009 Total Scan time: 946.920 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]