FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0455.ptfa, 795 aa vs ./tmplib.26680 library 1768222 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.6993+/- 0.005; mu= 7.3405+/- 0.332 mean_var=150.9389+/-35.537, 0's: 0 Z-trim: 2 B-trim: 42 in 1/35 Lambda= 0.1044 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4076 ( 605 res) mbh01667 ( 605) 1318 211 4.1e-55 mKIAA4247 ( 326 res) mfj16277 ( 326) 698 117 3.4e-27 >>mKIAA4076 ( 605 res) mbh01667 (605 aa) initn: 1307 init1: 744 opt: 1318 Z-score: 1081.9 bits: 210.6 E(): 4.1e-55 Smith-Waterman score: 1441; 43.372% identity (47.406% ungapped) in 611 aa overlap (210-795:22-605) 180 190 200 210 220 230 mKIAA0 KRRNGAGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT ::::::::.:::.::.:::.:::..:.::: mKIAA4 TGLGEHPSPLLPSPGLALSSSGVHVFGLCATALVTDVIQLATGYHTPFFLT 10 20 30 40 50 240 250 260 270 280 290 mKIAA0 VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYVSMYFNS ::::::: :..::. : ::..::::: : .: :.::.::::::::.::::::::::::. mKIAA4 VCKPNYTLLGTSCESNPYITQDICSGHDTHAILSARKTFPSQHATLSAFAAVYVSMYFNA 60 70 80 90 100 110 300 310 320 330 340 350 mKIAA0 TLTDSSKLLKPLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGLYAVGN ...:..:::::.:::.: : . .::::.::::..:::::: :::::.::: ::. .:::: mKIAA4 VISDTTKLLKPILVFAFAIAAGVCGLTQITQYRSHPVDVYAGFLIGAGIAAYLACHAVGN 120 130 140 150 160 170 360 370 380 390 400 410 mKIAA0 FL--PSE--DSMLQHRDALRSLTD-----LNQDPSRVLSAKNGSSGDGIAHTEGILNRNH : :.: . .::::.::. . :. . : . . : : . ::. mKIAA4 FQAPPAEKVPTPAPAKDALRALTQRGHESMYQQNKSVSTDELGPPG----RLEGVPRPVA 180 190 200 210 220 420 430 440 450 460 470 mKIAA0 RDASSLTNLKRANADVEIITPRSPMGKESMVTFSNTLPRANTPSVEDPVRRNASIHASMD :. .:: .::::..::....::::::::.::::::::::..:::..::.::. .::. .: mKIAA4 REKTSLGSLKRASVDVDLLAPRSPMGKEGMVTFSNTLPRVSTPSLDDPARRHMTIHVPLD 230 240 250 260 270 280 480 490 500 510 520 mKIAA0 SARSKQLLTQWKSKN-ESRKMSLQVMDTEPEGQSPPRSIEMRSSSEPSRVGVNGDHHVPG ..::.::. .::.:. :.: ..: . . ..: ... . : . . ... mKIAA4 ASRSRQLIGEWKQKSLEGRGLGLPDEASPVHLRAPAEQVAEEEEEEEEE---EEEEEEEE 290 300 310 320 330 340 530 540 550 560 570 580 mKIAA0 NQYLKIQPGTVPGCNNSMPG-GPRVSIQSRPGSSQLVHIPEE-TQENISTSPKSSSA--R .. . :. : . . :: :::: . ::: . ::::::: .: . . ::::::. : mKIAA4 EEEGPVPPSLYPTVQ-ARPGLGPRVILPPRPGPQPLVHIPEEGVQAGAGLSPKSSSSSVR 350 360 370 380 390 400 590 600 610 620 630 mKIAA0 AKWLKAAEK-----TVACN--RSNNQPRIMQVIAMSKQQGVLQSSPKNAEGSTVTCTG-S ::::. ::: .:: . : : ::..::::::: : .:: .:. . .. : mKIAA4 AKWLSMAEKGGGPVAVAPSQPRVANPPRLLQVIAMSKAAG----GPKAETASSSSASSDS 410 420 430 440 450 640 650 660 670 680 690 mKIAA0 IRYKTLTDHEPSGIVRVEAHPENNRPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELND .:.. .:.. ..:: ..:: .. :.... . :: :.::: . . .:::.: mKIAA4 SQYRSPSDRDSASIVTIDAHAPHH-PVVHLSA-----GSTPWEWKAKVVEG-EGSYELGD 460 470 480 490 500 510 700 710 720 730 740 750 mKIAA0 LNRD-SESCESLKDSFGSGDRKRSNIDSNEHHHHGITTIRVTPVEG--SEIGSETLSVSS : : ::. . ..: :. :..:..: . ...:. .. :: .:: .. mKIAA4 LARGFRSSCK--QPGMGPGS-PVSDVDQEEPRFGAVATVNLATGEGLPPPGASEGALGAG 520 530 540 550 560 760 770 780 790 mKIAA0 SRDSTLRRKGNIILIPERSNSPENTRNIFYKGTSPTRAYKD ::.:::::. . . :: : .:. . : :.: mKIAA4 SRESTLRRQ--VGGLAEREVEAEAES--YYRRMQARR-YQD 570 580 590 600 >>mKIAA4247 ( 326 res) mfj16277 (326 aa) initn: 514 init1: 367 opt: 698 Z-score: 580.6 bits: 117.0 E(): 3.4e-27 Smith-Waterman score: 698; 39.048% identity (41.275% ungapped) in 315 aa overlap (93-395:11-320) 70 80 90 100 110 120 mKIAA0 VHTSPGGGLGARQAAGMSAKERPKGKVIKDSVTLLPCFYFVELPILASSVVSLYFLELTD : ...::: :::: :.:..:. :..: :: mKIAA4 EMAVENNTQRSYSIIPCFIFVELVIMAGTVLLAYYFECTD 10 20 30 40 130 140 150 160 170 mKIAA0 VFKPVH-SGFSCYDRSLSMPYIEPTQEAI--PFLMLLSLAFAGPAITIMVGEGILYCCLS .:. :: .:: : : .: :: .:.. :... :: : :. :..:: .: : mKIAA4 TFQ-VHIQGFFCQDGDLMKPYPGTEEESFISPLVLYCVLA-ATPTAIIFIGEISMYFIKS 50 60 70 80 90 180 190 200 210 220 230 mKIAA0 KRRNGAGLEPNINAGGCNFNS-FLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFL :.. . : : .: : . : .::: .::.:: .::: .: .... :. ::. .:::: mKIAA4 TRESLIAEEKMILTGDCCYLSPLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFL 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA0 TVCKPNYTSLNVSCKENSYIVED--ICSGSDLTVINSGRKSFPSQHATLAAFAAVYVSMY :::.::::: . :. .. .... ::.: :: ::...:.::::.::.:. ..:.:..:: mKIAA4 TVCQPNYTSTD--CRAHQQFINNGNICTG-DLEVIEKARRSFPSKHAALSIYSALYATMY 160 170 180 190 200 210 300 310 320 330 340 350 mKIAA0 FNSTL-TDSSKLLKPLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGLY ..::. : ::.: ::.: . . ... ::.:...:.:: :: ::..: ..::.::. mKIAA4 ITSTIKTKSSRLAKPVLCLGTLCTAFLTGLNRVSEYRNHCSDVIAGFILGTAVALFLGMC 220 230 240 250 260 270 360 370 380 390 400 410 mKIAA0 AVGNFLPSEDSMLQHR-DALRSLTDLN----QDPSRVLSAKNGSSGDGIAHTEGILNRNH .: :: .. : . . . :.. . ..: ..:::.: :.. mKIAA4 VVHNFRGTQGSPSKPKPEDPRGVPLMAFPRIESPLETLSAQNHSASMTEVT 280 290 300 310 320 420 430 440 450 460 470 mKIAA0 RDASSLTNLKRANADVEIITPRSPMGKESMVTFSNTLPRANTPSVEDPVRRNASIHASMD 795 residues in 1 query sequences 1768222 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:13 2006 done: Mon Mar 27 10:21:14 2006 Scan time: 0.920 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]