FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0993.ptfa, 646 aa vs ./tmplib.26680 library 1768371 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.2281+/-0.00589; mu= 9.8869+/- 0.396 mean_var=158.5796+/-37.912, 0's: 0 Z-trim: 25 B-trim: 109 in 1/35 Lambda= 0.1018 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1607 ( 355 res) msk09334 ( 355) 906 145 1.2e-35 mKIAA0540 ( 1539 res) mbg09815 (1539) 483 84 1.5e-16 mKIAA1544 ( 1356 res) mbg00554 (1356) 426 75 4.6e-14 mKIAA0647 ( 1186 res) mbg01911 (1186) 245 48 4.3e-06 mKIAA1643 ( 950 res) mbh04344 ( 950) 242 48 5.1e-06 mKIAA1255 ( 176 res) mbg10338 ( 176) 223 44 1.2e-05 mKIAA1537 ( 628 res) mbg18407 ( 628) 227 45 1.8e-05 mKIAA4212 ( 600 res) mbg08227 ( 600) 222 45 2.9e-05 mKIAA1362 ( 1407 res) mia41047 (1407) 215 44 0.0001 mKIAA0305 ( 1536 res) mbg08215 (1536) 214 44 0.00012 mKIAA0321 ( 2548 res) mef00119 (2548) 210 44 0.00025 mKIAA1589 ( 775 res) mbh04724 ( 775) 192 40 0.00073 mFLJ00274 ( 1530 res) mpf00869 (1530) 195 41 0.00083 mKIAA0981 ( 2117 res) mib04069 (2117) 192 41 0.0014 mKIAA4239 ( 1059 res) mfj24184 (1059) 177 38 0.0041 mKIAA1435 ( 411 res) mbp03169 ( 411) 171 37 0.0041 mFLJ00238 ( 1452 res) mfj01101 (1452) 178 39 0.0045 >>mKIAA1607 ( 355 res) msk09334 (355 aa) initn: 1032 init1: 874 opt: 906 Z-score: 732.6 bits: 144.9 E(): 1.2e-35 Smith-Waterman score: 941; 46.316% identity (49.624% ungapped) in 285 aa overlap (113-380:11-293) 90 100 110 120 130 mKIAA0 QIPKQLFKKPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLRPSLTPVKEL---- :: ... :.: : :::: . ::.. mKIAA1 GKDASTPVGLPGHSQS--FLHSLPALRPSQVTVKDMYLFS 10 20 30 140 150 160 170 180 190 mKIAA0 ------KEPVGQIVCTDKGILAVEQNKVLIPPAWNKTFAWGYADLSCRLGTYESDKAVTV : .:.:: :.:.:::::.::.:.:: ::.::.::. :.:: ::.: ::: . . mKIAA1 LGSESPKGAIGHIVPTEKSILAVEKNKLLMPPLWNRTFSWGFDDFSCCLGSYGSDKILMT 40 50 60 70 80 90 200 210 220 230 240 250 mKIAA0 YECLSEWGQILCAVCPNPKLVITGGTSTVVCVWEMGTSKEKAKPLTLKQALLGHTDTVTC .: :. :: ::::::.: ...:.:.:.:::.::.. : . . : :.::: :::..::: mKIAA1 FENLAAWGPCLCAVCPSPTMIVTSGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTC 100 110 120 130 140 150 260 270 280 290 300 310 mKIAA0 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI :::... ..::::.:::::.:::..:: .. : :: .::. :....: ::::::... mKIAA1 LTASVTFSLLVSGSQDRTCILWDLDHLSRVACLPVHREGISAIAISDVSGTIVSCAGAHL 160 170 180 190 200 210 320 330 340 350 360 370 mKIAA0 HVWSINGNPIVSVNTFTGRSQQIVCCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP .:..::.:..:..: : :.:::. : ::...::.:: .::.::.:. : ...: mKIAA1 SLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMP 220 230 240 250 260 270 380 390 400 410 420 mKIAA0 -------ETPAPEPVEDLEMQEGCPEAQIGQQAQDDDSSDSETEEPSVSQDPKDTSSQPS : :. ::. mKIAA1 VPRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSK 280 290 300 310 320 330 >>mKIAA0540 ( 1539 res) mbg09815 (1539 aa) initn: 509 init1: 383 opt: 483 Z-score: 389.4 bits: 83.6 E(): 1.5e-16 Smith-Waterman score: 523; 33.240% identity (37.658% ungapped) in 358 aa overlap (1-336:1036-1373) 10 20 30 mKIAA0 PWAKGDPREFIRVHREALECDYVSAHLHEW ::: :.:..::. ::.::: .:::.::::: mKIAA0 YFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWA-GSPEDFIQKHRQALESEYVSTHLHEW 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK :::::::::.:::: ::.:::.. ::: ::. .. : .. : :.:.:::: : ::.: mKIAA0 IDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLK 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 KPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLRPSLTPVKELKEPVGQIVCTDK .:::: ::.... . . :.. .:..:..:. .. : :. . . mKIAA0 EPHPP-----RLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPLVLALVPHR 1130 1140 1150 1160 1170 160 170 180 190 mKIAA0 ---GILAVEQNKVLIPPAWNK---TFAWGYADLSCR-LGTYESDKAV---TVYECLS-EW .... .. .:. . . : .: : . :. .: .. : . :: : mKIAA0 QSHSFITQSSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGPW 1180 1190 1200 1210 1220 1230 200 210 220 230 240 250 mKIAA0 -------GQILCAVCPNPKLVITGGTSTVVCVWEMGTSKEKAKPL-TLKQALLGHTDTVT .: : :: :. ::...:: :. :. . . : : . : : : :: mKIAA0 VSDSGVSAQAL-AVAPDGKLLFSGGH------WD-GSLRVTSLPRGRLLNQLSRHLDIVT 1240 1250 1260 1270 1280 1290 260 270 280 290 300 mKIAA0 CATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDI--VSCAG : . . ..::::: ::..: : : : : .. .. : : . :::.. mKIAA0 CLALDTCGIYLISGSRDTTCMVWRL------LQQSGLSAGLAPKPVQVLYGHVAAVSCVA 1300 1310 1320 1330 1340 310 320 330 340 350 360 mKIAA0 TYIHV-WSINGNPIVSVNTFTGRSQQIVCCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEF .. ...:. .: : : :.: mKIAA0 ISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALGAEGQIVVQSSAC 1350 1360 1370 1380 1390 1400 >>mKIAA1544 ( 1356 res) mbg00554 (1356 aa) initn: 492 init1: 376 opt: 426 Z-score: 344.8 bits: 75.1 E(): 4.6e-14 Smith-Waterman score: 467; 34.364% identity (37.594% ungapped) in 291 aa overlap (1-274:879-1161) 10 20 30 mKIAA0 PWAKGDPREFIRVHREALECDYVSAHLHEW :::: :..:.:..: ::: ..:: .::.: mKIAA1 YYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLHQW 850 860 870 880 890 900 40 50 60 70 80 90 mKIAA0 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK :::::::::.:: ::.:.::::.: :::.:.. .:.::. . : . :.:::: :.::. mKIAA1 IDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLI 910 920 930 940 950 960 100 110 120 130 140 mKIAA0 KPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD .::::. .: . : .:.. . :. :: .:: .. . . : mKIAA1 EPHPPRSSAMHLCF----LPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL-TI 970 980 990 1000 1010 1020 150 160 170 180 190 200 mKIAA0 KGILAVEQNKVLIPPAWNKTF----AWGYA-DLSCRLGTYESDKAVTVYECLSEWGQILC ....: .... :..: : ::. : . .: : : .. ... :: mKIAA1 PAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHL-PIEMDPLIANNSGVNKR-QITD 1030 1040 1050 1060 1070 1080 210 220 230 240 250 mKIAA0 AVCPNPKL-----VITGGTSTV-VC-VWEMGTSKEKAKPLTLKQALLGHTDTVTCATASL : . .. :.:. . . .: :. . ... : : ..:: :.::: . : mKIAA1 LVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSE 1090 1100 1110 1120 1130 1140 260 270 280 290 300 310 mKIAA0 AY----HIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYIH .: ::::::: : ..: mKIAA1 SYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCA 1150 1160 1170 1180 1190 1200 >>mKIAA0647 ( 1186 res) mbg01911 (1186 aa) initn: 296 init1: 227 opt: 245 Z-score: 201.7 bits: 48.4 E(): 4.3e-06 Smith-Waterman score: 257; 29.070% identity (33.784% ungapped) in 172 aa overlap (487-640:1006-1171) 460 470 480 490 500 510 mKIAA0 QLSLDEKDGFIFVNYSEGQTRAHLQGPLAHPHPNPIEARSYSRLKPGYRWERQLVFRSKL : :. . . ... ::: : . . :. mKIAA0 SHPKQVSSTKPSLLSCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEAGYRQEVEQLRRQVR 980 990 1000 1010 1020 1030 520 530 540 550 mKIAA0 TMHTAFD-RKDNTHPAE--------VTALGVS---------KDHSRILVGDSRGRVFSWS .. .: :. . ::: : : : .:::. .... :: mKIAA0 ELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDHSEDCLSEA-----SWE 1040 1050 1060 1070 1080 1090 560 570 580 590 600 610 mKIAA0 VSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLK :. .. . .:: :. .. : .:. .: :..:::::::::..:: : ... : . mKIAA0 PVDKK-ETEVTRWVPDHMASHCFNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQ 1100 1110 1120 1130 1140 620 630 640 mKIAA0 ISSPVRVCQNCYYSLQHERGAEDGPRNC . .:: ::..:: .: :. : mKIAA0 LYDPVLVCNSCYEHIQVSRARELMSQHLKKPIATASS 1150 1160 1170 1180 >>mKIAA1643 ( 950 res) mbh04344 (950 aa) initn: 265 init1: 238 opt: 242 Z-score: 200.4 bits: 47.9 E(): 5.1e-06 Smith-Waterman score: 242; 22.053% identity (22.835% ungapped) in 263 aa overlap (373-630:678-936) 350 360 370 380 390 400 mKIAA0 MNEWDTQNVIVTGHSDGVVRFWRMEFLQVPETPAPEPVEDLEMQEGCPEAQIGQQAQDDD : :: . : : :... ... : . mKIAA1 AKGGDKEPERIDEAQPSDVTLPAEDASNRQEPKAPASSKCLAHTSG-PQVDTASRLQGEG 650 660 670 680 690 700 410 420 430 440 450 460 mKIAA0 SSDSETEEPSVSQDPKDTSSQPSSTSHRPRAASCRATATWCTDSGSDDSRRWSDQLSLDE .. : . .:::. . : .. ::. .. :.: . :. :: mKIAA1 EVKGQPEPEARKQDPEKS---PVVSGDSPRGDVAQTEHQHLLGSSSTVGSCSLDNTRLDV 710 720 730 740 750 760 470 480 490 500 510 mKIAA0 KDGFIFVN--YSEGQTRAHLQGPLAHPHPNPIEARSYS-RLKPGYRWERQLVFRSKL-TM . . :. .. . :....: : . . . .:. .: . . .... . .: mKIAA1 ATAAMPVTPMATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYASDLRSILKTLFEVM 770 780 790 800 810 820 520 530 540 550 560 570 mKIAA0 HTAFDRKDNTHPAEVT-ALGVSKDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGG : . :. . .:: .: . .. : .. . . . . .:: ::. mKIAA1 ATKPETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEAC 830 840 850 860 870 880 580 590 600 610 620 630 mKIAA0 DSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHER :..:.. :.. .:.::::.::..::..:: .. . : .::::: .::. mKIAA1 GFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPF 890 900 910 920 930 940 640 mKIAA0 GAEDGPRNC mKIAA1 YSDKTGM 950 >>mKIAA1255 ( 176 res) mbg10338 (176 aa) initn: 162 init1: 162 opt: 223 Z-score: 193.7 bits: 44.2 E(): 1.2e-05 Smith-Waterman score: 223; 32.653% identity (34.409% ungapped) in 98 aa overlap (538-630:70-167) 510 520 530 540 550 560 mKIAA0 RQLVFRSKLTMHTAFDRKDNTHPAEVTALGVSKDHSRILVGDSRG-RVFSWSV-SDQPGR . .. :. :....: .:...: . : mKIAA1 PEYPLDKPDAEGNTVLLLAYMKGNANLCRAIVRSGVRLGVNNNQGVNIFNYQVATKQLLF 40 50 60 70 80 90 570 580 590 600 610 620 mKIAA0 SAADHWVKDE---GGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSP : :. :..: :...:..: :.::::.::.:.:.::: . : .. ...: mKIAA1 RLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKP 100 110 120 130 140 150 630 640 mKIAA0 VRVCQNCYYSLQHERGAEDGPRNC ::::. :. mKIAA1 VRVCNICFDVLTLGGVS 160 170 >>mKIAA1537 ( 628 res) mbg18407 (628 aa) initn: 230 init1: 187 opt: 227 Z-score: 190.5 bits: 45.5 E(): 1.8e-05 Smith-Waterman score: 227; 44.444% identity (45.902% ungapped) in 63 aa overlap (571-633:559-619) 550 560 570 580 590 600 mKIAA0 DHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCG :.::. . :. : .:::..:.::::::: mKIAA1 ALQELGSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKHHCRNCG 530 540 550 560 570 580 610 620 630 640 mKIAA0 QLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHERGAEDGPRNC ..::. :: ..:. . .:::::..:. : mKIAA1 EIFCNACS--DNELPLPSSPKPVRVCDSCHAMLIQRCSSNMP 590 600 610 620 >>mKIAA4212 ( 600 res) mbg08227 (600 aa) initn: 223 init1: 181 opt: 222 Z-score: 186.8 bits: 44.7 E(): 2.9e-05 Smith-Waterman score: 222; 43.333% identity (44.828% ungapped) in 60 aa overlap (571-630:531-588) 550 560 570 580 590 600 mKIAA0 DHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCG :.::. . :. : ::...:.::::::: mKIAA4 ALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKDFSISRRKHHCRNCG 510 520 530 540 550 560 610 620 630 640 mKIAA0 QLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHERGAEDGPRNC ..::. :: ..:. . .:::::..:. mKIAA4 HIFCNTCS--SNELALPSYPKPVRVCDSCHTLLLQRCSSTAS 570 580 590 600 >>mKIAA1362 ( 1407 res) mia41047 (1407 aa) initn: 180 init1: 147 opt: 215 Z-score: 177.0 bits: 44.1 E(): 0.0001 Smith-Waterman score: 215; 40.278% identity (40.845% ungapped) in 72 aa overlap (563-634:1188-1258) 540 550 560 570 580 590 mKIAA0 VTALGVSKDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTER : . : :. : . : :. .:.:: : mKIAA1 SSIEEYAKKRITFCPSRSLDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWR 1160 1170 1180 1190 1200 1210 600 610 620 630 640 mKIAA0 RHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHERGAEDGPRNC ::::: ::.. :: :: . . :: .. .:::..:. ::. mKIAA1 RHHCRACGKIVCQACSSNKYGLDYLK-GQLARVCEHCFQELQKLDHQLSPRVGSPGNHKS 1220 1230 1240 1250 1260 1270 mKIAA1 PSSALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKN 1280 1290 1300 1310 1320 1330 >>mKIAA0305 ( 1536 res) mbg08215 (1536 aa) initn: 201 init1: 170 opt: 214 Z-score: 175.8 bits: 44.0 E(): 0.00012 Smith-Waterman score: 214; 37.143% identity (38.235% ungapped) in 70 aa overlap (571-640:740-807) 550 560 570 580 590 600 mKIAA0 DHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCG :: : . .: .:.:.:..:.:::::: :: mKIAA0 DGSSFVTANKDSLPENKRKESLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACG 710 720 730 740 750 760 610 620 630 640 mKIAA0 QLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHERGAEDGPRNC ..:: : . ... :. . .::: :: .... .. : mKIAA0 KVFCGVCCNRKCKLQYLE--KEARVCVICYETINKAQAFERMMSPGGSCLKSNHSNECAT 770 780 790 800 810 820 mKIAA0 DQPLQETQTSSTPSPTTLPISALKQPNVEGPCSKEQKRVWFADGILPNGEVADTTKLSSG 830 840 850 860 870 880 646 residues in 1 query sequences 1768371 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:34 2006 done: Mon Mar 27 10:33:35 2006 Scan time: 0.810 Display time: 0.210 Function used was FASTA [version 3.4t11 Apr 17, 2002]