Miyakogusa Predicted Gene
- Lj6g3v1879930.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M124_SOYBN |
312 |
87.0 |
93.8 |
(tr|I1M124) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT4G21770.1 |
242 |
66.9 |
81.6 |
| Symbols: | Pseudouridine synthase family protein | chr4:11564028-11566345 REVERSE LENGTH=472 |
| Medicago |
Medtr2g022770.3 |
304 |
83.2 |
93.8 |
| RNA pseudouridine synthase | HC | chr2:7928768-7924511 | 20130731 |
| Soybean |
Glyma13g27660.1 |
311 |
87.0 |
93.8 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1879930.1 |
length: 161 aa. |
| IPR020103 |
Pseudouridine synthase, catalytic domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0001522 |
pseudouridine synthesis |
|
|
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Biological Process |
GO:0009451 |
RNA modification |
|
|
| Molecular Function |
GO:0009982 |
pseudouridine synthase activity |
|
|
| superfamily |
SSF55120 |
Pseudouridine |
7e-06 |
61-93 |
| no_ID |
|
| HMMPanther |
PTHR10436 |
RNA |
1.2e-40 |
1-96 |
| HMMPanther |
PTHR10436:SF50 |
SUBFAMILY |
1.2e-40 |
1-96 |
- Wolf-PSORT
Lj6g3v1879930.1 nucl 8, cyto 4, cysk_nucl 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1879930.1 |
|