Miyakogusa Predicted Gene

Lj6g3v1392450.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MGT9_SOYBN 1382 79.1 86.8 (tr|I1MGT9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G57430.1 1133 62.7 77.6 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890
Medicago Medtr2g035620.1 1410 79.9 86.8 | PPR containing plant protein | HC | chr2:15068017-15065354 | 20130731
Soybean Glyma15g16840.1 1382 79.1 86.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1392450.1 length: 867 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0043 111-135
139-169
212-232
416-443
444-471
528-554
634-659
701-729
HMMPfam PF13041 PPR_2 1.3e-09 237-284
341-388
554-606
HMMTigr TIGR00756 PPR: 0.00012 139-172
240-273
343-376
444-471
556-584
596-630
ProfileScan PS51375 PPR 8.342 35-69
137-171
106-136
70-104
238-272
207-237
340-375
309-339
376-410
442-472
411-441
554-584
523-553
594-629
630-660
697-731
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5.9e-10 556-727
no_ID  
HMMPanther PTHR24015 FAMILY 0 34-867
HMMPanther PTHR24015:SF96 SUBFAMILY 0 34-867
HMMPfam PF14432 DYW_deaminase 2.5e-21 734-857
Seg seg seg NA 2-33
152-167
500-509
superfamily SSF48452 TPR-like 1.1e-06 549-773
Wolf-PSORT
Lj6g3v1392450.1	chlo 6, E.R. 3, plas 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1392450.1