Miyakogusa Predicted Gene
- Lj6g3v1370730.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SCT1_LOTJA |
141 |
61.7 |
74.2 |
(tr|I3SCT1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G05642.1 |
72.4 |
33.1 |
50.0 |
| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:2098253-2100867 REVERSE LENGTH=532 |
| Medicago |
Medtr7g110100.1 |
84.7 |
29.1 |
52.3 |
| replication factor-A carboxy-terminal domain protein | HC | chr7:45127464-45130150 | 20130731 |
| Soybean |
--No_Hits--
|
|
|
|
|
| LJGI |
gnl|LJGI|TC72622 |
394 |
100.0 |
100.0 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1370730.1 |
length: 254 aa. |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
1.7e-16 |
41-151 |
| superfamily |
SSF50249 |
Nucleic |
1.5e-27 |
2-170 |
| IPR013955 |
Replication factor A, C-terminal |
| HMMPfam |
PF08646 |
Rep_fac-A_C |
8.4e-17 |
25-149 |
| no_ID |
|
| HMMPanther |
PTHR23273 |
REPLICATION |
2.4e-14 |
25-161 |
| Seg |
seg |
seg |
NA |
190-194 |
- Wolf-PSORT
Lj6g3v1370730.1 nucl 8, mito 2, chlo 1, cyto 1, plas 1, extr 1, cyto_mito 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1370730.1 |
|