Miyakogusa Predicted Gene
- Lj6g3v1078040.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7ID03_MEDTR |
385 |
64.7 |
77.4 |
(tr|G7ID03) Histidine decarboxylase OS=Medicago truncatula GN=MTR_1g099020 PE=3 SV=1 |
| TAIR_pep |
AT1G43710.1 |
321 |
56.7 |
73.2 |
| Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482 |
| Medicago |
Medtr1g099050.1 |
397 |
64.9 |
77.0 |
| serine decarboxylase | HC | chr1:44671386-44668254 | 20130731 |
| Soybean |
Glyma10g37180.1 |
339 |
67.5 |
80.3 |
|
| LJGI |
gnl|LJGI|TC62576 |
1298 |
98.4 |
98.4 |
weakly similar to UniRef100_A7QN02 Cluster: Chromosome undetermined scaffold_129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1078040.2 |
length: 309 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
9.4e-18 |
116-303 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
7.6e-36 |
116-303 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
6.3e-46 |
81-303 |
| IPR021115 |
Pyridoxal-phosphate binding site |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| PatternScan |
PS00392 |
DDC_GAD_HDC_YDC |
NA |
279-300 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
1e-106 |
118-304 |
| HMMPanther |
PTHR11999:SF4 |
GROUP |
1e-106 |
118-304 |
| Seg |
seg |
seg |
NA |
199-215 |
- Wolf-PSORT
Lj6g3v1078040.2 cyto 8, cysk 2, nucl 1, mito 1, vacu 1, golg 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1078040.2 |
|