Miyakogusa Predicted Gene

Lj6g3v1018310.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KSS9_SOYBN 1043 96.3 98.2 (tr|I1KSS9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G73720.1 946 86.3 93.9 | Symbols: SMU1 | transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511
Medicago Medtr3g052220.1 993 93.2 96.5 | transducin/WD-like repeat-protein | HC | chr3:20670443-20658166 | 20130731
Soybean Glyma08g13560.1 1043 96.3 98.2  
LJGI gnl|LJGI|BW630668 813 100.0 100.0 homologue to UniRef100_A7PCU9 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1018310.1 length: 513 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00038 218-242
260-291
296-333
340-377
478-512
HMMSmart SM00320 WD40 0.00076 202-242
253-292
295-335
338-377
380-426
428-470
473-512
ProfileScan PS50082 WD_REPEATS_2 11.678 222-251
260-301
303-344
345-386
480-513
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 2.3e-05 7-39
ProfileScan PS50896 LISH 10.276 7-39
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 0.00017 41-93
ProfileScan PS50897 CTLH 9.751 41-93
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.9e-77 200-513
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 44.109 210-513
superfamily SSF50978 WD40 6.3e-75 157-512
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 364-378
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2e-06 279-293
364-378
499-513
no_ID  
Coil coil coiled-coil NA 71-92
HMMPanther PTHR22848 WD40 0 3-513
Wolf-PSORT
Lj6g3v1018310.1	nucl 10, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1018310.1