Miyakogusa Predicted Gene

Lj6g3v0908780.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N0S6_SOYBN 912 66.5 71.4 (tr|I1N0S6) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT4G16630.1 758 68.8 78.4 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr4:9362176-9366449 REVERSE LENGTH=789
Medicago Medtr3g049990.1 889 64.2 71.0 | DEAD-box ATP-dependent RNA helicase | HC | chr3:19680414-19670656 | 20130731
Soybean Glyma18g11950.1 910 66.4 71.4  
LJGI gnl|LJGI|TC69554 884 100.0 100.0 similar to UniRef100_A7NST3 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0908780.1 length: 744 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 300-308
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.8e-26 417-489
HMMSmart SM00490 helicase 5.3e-31 404-489
ProfileScan PS51194 HELICASE_CTER 21.344 380-528
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1e-45 173-342
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 4.6e-57 168-369
ProfileScan PS51192 HELICASE_ATP_BIND_1 30.943 180-354
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 12.208 149-177
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-67 219-512
no_ID  
Coil coil coiled-coil NA 16-37
527-575
601-622
Gene3D G3DSA:3.40.50.300 no description 3.6e-44 135-353
354-519
HMMPanther PTHR24031 FAMILY 1.1e-167 13-590
Seg seg seg NA 13-45
122-128
290-302
368-379
556-569
586-598
607-628
648-659
668-679
682-699
718-744
Wolf-PSORT
Lj6g3v0908780.1	nucl 9, cyto 3, chlo 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0908780.1