Miyakogusa Predicted Gene

Lj6g3v0647600.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N056_SOYBN 622 89.7 92.7 (tr|I1N056) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G56130.1 575 82.9 88.9 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like superfamily protein | chr5:22722755-22725065 REVERSE LENGTH=315
Medicago Medtr3g061450.1 614 88.8 92.1 | transducin/WD-like repeat-protein | HC | chr3:24506567-24498548 | 20130731
Soybean Glyma18g07920.1 622 89.7 92.7  
LJGI gnl|LJGI|TC79617 1051 99.8 99.8 similar to UniRef100_A9TTX0 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0647600.1 length: 331 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0064 13-47
60-94
200-236
242-271
HMMSmart SM00320 WD40 89 8-47
54-94
156-194
197-236
239-278
281-319
ProfileScan PS50082 WD_REPEATS_2 12.915 15-49
61-103
204-245
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3e-60 13-314
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 31.006 15-287
superfamily SSF50978 WD40 6.2e-58 5-314
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 81-95
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2.6e-07 34-48
81-95
223-237
no_ID  
HMMPanther PTHR22839 THO 2.2e-115 7-330
Wolf-PSORT
Lj6g3v0647600.1	cyto 7, nucl 4, cyto_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0647600.1