Miyakogusa Predicted Gene

Lj6g3v0145990.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LIT2_SOYBN 437 79.2 88.0 (tr|K7LIT2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G33270.1 266 50.2 71.1 | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457
Medicago Medtr2g060710.1 427 76.5 86.5 | transducin/WD40 repeat protein | HC | chr2:25747612-25744900 | 20130731
Soybean Glyma10g22670.1 390 76.1 84.4  
LJGI gnl|LJGI|TC59011 404 98.2 98.2 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0145990.1 length: 274 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4.6e-05 38-69
84-116
126-164
220-253
HMMSmart SM00320 WD40 0.00026 36-73
77-116
122-164
167-211
214-253
ProfileScan PS50082 WD_REPEATS_2 12.881 84-116
221-254
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.3e-49 12-255
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 28.976 16-262
superfamily SSF50978 WD40 3.9e-50 7-253
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 103-117
151-165
240-254
no_ID  
HMMPanther PTHR19918 CELL 1.5e-112 13-274
HMMPanther PTHR19918:SF0 SUBFAMILY 1.5e-112 13-274
Wolf-PSORT
Lj6g3v0145990.1	nucl 7, cyto 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0145990.1